RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11663
(297 letters)
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 212 bits (540), Expect = 3e-69
Identities = 95/213 (44%), Positives = 137/213 (64%), Gaps = 7/213 (3%)
Query: 18 EAFVYNRHGNPEYDFQLAEP----NIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGG 73
E + + NPE + +P N +P LLVN+GSGVSI+ V S +R+ GT+ GGG
Sbjct: 3 ECYYFENPTNPELCQK--KPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGG 60
Query: 74 TFWGLGSLLTKAKGFDELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVC 133
TF GL LLT + F+E LE+A KGD + D LV+DIYGGDY+ GL G +ASSFG +
Sbjct: 61 TFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMM 120
Query: 134 KQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTIS 193
++ + S+ DLAR+ L I+N+IG IA + A+ + +V F G FLR + +SM ++
Sbjct: 121 SKEKRD-SISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLA 179
Query: 194 FSIKYWSKGAVQSLFLRHEGYLGAIGAFLRGAE 226
+++ +WSKG +++LFL HEGY GA+GA L +
Sbjct: 180 YAMDFWSKGQLKALFLEHEGYFGAVGALLELFK 212
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
{Staphylococcus aureus [TaxId: 1280]}
Length = 267
Score = 87.0 bits (214), Expect = 1e-20
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 8/194 (4%)
Query: 29 EYDFQLAEPNIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAKGF 88
+ ++ Y+ N+G+G S+ + R+GG TGGG GLG LL++ +
Sbjct: 79 GILLKEQGHDLADYIFANVGTGTSLHYFD-GQSQRRVGGIGTGGGMIQGLGYLLSQITDY 137
Query: 89 DELLELAEKGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLA 148
+L ++A+ GD D+ VR IY + ++ ++ + ++
Sbjct: 138 KQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGD----LTAANFGHVLHHLDADFTPSNKL 193
Query: 149 RSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLF 208
+++ + + +A A K + + + G N+ L + Y + +
Sbjct: 194 AAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVE---DYTVLRGCKPYY 250
Query: 209 LRHEGYLGAIGAFL 222
+ + + GAIGA
Sbjct: 251 VENGAFSGAIGALY 264
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 245
Score = 29.7 bits (66), Expect = 0.32
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 133 CKQDTMEGQCSEADLARSLLFAISNDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTI 192
+ RSL + IG + A M +L++ G + +++H +
Sbjct: 161 GRDVLFRVGVEAGTYIRSL----IHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDL 216
Query: 193 SFSIKYWSKGAVQSLFLRH 211
+W + ++ F +
Sbjct: 217 VDYYYFWKEDGIEEYFRKA 235
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 29.1 bits (65), Expect = 0.33
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 1 MECLIQGCNFLLR 13
++CLIQG ++
Sbjct: 129 LDCLIQGLLYVDS 141
>d1t1ea2 d.58.3.2 (A:12-190) Pro-kumamolisin activation domain
{Bacillus sp. MN-32 [TaxId: 198803]}
Length = 179
Score = 29.5 bits (66), Expect = 0.34
Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 6/62 (9%)
Query: 197 KYWSKGAVQSLFLRHEGYLGAIGAFLRGAECGACQVSYHPLSMHTISFSIKYWSKGAVQS 256
+ + A + I F + T S AV
Sbjct: 59 VHLEREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAA---GTAVLSG---PVDAVNQ 112
Query: 257 LF 258
F
Sbjct: 113 AF 114
Score = 26.4 bits (58), Expect = 3.0
Identities = 3/44 (6%), Positives = 8/44 (18%)
Query: 247 KYWSKGAVQSLFLRHEGYLGAIGAFLRGAECGACQVRLGLKYIR 290
+ + A + I F + +
Sbjct: 59 VHLEREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAAGTAV 102
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 27.5 bits (60), Expect = 2.0
Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 29/190 (15%)
Query: 38 NIFPYLLVNIGSGVSIMKVESDSKVERIGGTATGGGTFWGLGSLLTKAK-GFDELLELAE 96
++ G V ++ VE+ + GT L + + +L EL
Sbjct: 94 PNVHTVIDIGGQDVKVIHVENGTMTNFQMNDKCAAGTGRFLDVMANILEVKVSDLAELGA 153
Query: 97 KGDHRHADMLVRDIYGGDYKCLGLPGDLIASSFGRVCKQDTMEGQCSEADLARSLLFAIS 156
K R + F + + D+ + +++
Sbjct: 154 KSTKRV------------------AISSTCTVFAESEVISQLSKGTDKIDIIAGIHRSVA 195
Query: 157 NDIGQIASLYAMMHKLKKVYFGGYFLRNHPLSMHTISFSIKYWSKGAVQSLFLRHEGYLG 216
+ ++ L + +K V G +N+ + + V+ Y G
Sbjct: 196 S---RVIGLANRVGIVKDVVMTGGVAQNYGVRG---ALEEGL----GVEIKTSPLAQYNG 245
Query: 217 AIGAFLRGAE 226
A+GA L +
Sbjct: 246 ALGAALYAYK 255
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 65
Score = 24.4 bits (53), Expect = 4.5
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 182 LRNHPLSMHTISFSIKYWSKGAVQSLFLRHEG 213
LR + I+ ++ S+ F +
Sbjct: 10 LRLTARPILDIALQYRFDSQQTFTRAFKKQFA 41
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase
(KNTase), C-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 128
Score = 25.6 bits (56), Expect = 5.3
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 80 SLLTKAKGFDELLELAEKGDHRHADMLVR 108
G+D L + G ++ L+
Sbjct: 72 KQSDLPSGYDHLCQFVMSGQLSDSEKLLE 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,128,223
Number of extensions: 51810
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 12
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)