BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11667
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFF|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Riken
           Cdna 2810002d23 Protein
          Length = 85

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 59  CAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGRHLLAATNPL 110
           C  C  K  + +SF CRC   FC  HR+ E H C +DYK+ GR  L   NP+
Sbjct: 28  CFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPV 79


>pdb|1WFP|A Chain A, Solution Structure Of The Zf-an1 Domain From Arabiopsis
          Thaliana F5o11.17 Protein
          Length = 74

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 57 SRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKA 98
          +RC  CN K+ V + F CRC   FC  HR+PE H C FD+K 
Sbjct: 26 TRCLSCNKKVGV-TGFKCRCGSTFCGTHRYPESHECQFDFKG 66


>pdb|1WG2|A Chain A, Solution Structure Of Zf-An1 Domain From Arabidopsis
           Thaliana
          Length = 64

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 57  SRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYG 100
           +RC  CN K+ V   F C+C   FC  HR+PE+H C+FD+K  G
Sbjct: 16  NRCFSCNKKVGV-MGFKCKCGSTFCGSHRYPEKHECSFDFKEVG 58


>pdb|1WFH|A Chain A, Solution Structrue Of The Zf-An1 Domain From Arabidopsis
           Thaliana At2g36320 Protein
          Length = 64

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 57  SRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYG 100
           +RC  C  ++ + + F CRC   FC  HR+PE H CTFD+K+ G
Sbjct: 16  NRCTVCRKRVGL-TGFMCRCGTTFCGSHRYPEVHGCTFDFKSAG 58


>pdb|1WFL|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Zinc
          Finger Protein 216
          Length = 74

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 55 KRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKA 98
          K++RC  C  K+ + + F CRC  LFC  HR+ ++H C +DYKA
Sbjct: 24 KKNRCFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDYKA 66


>pdb|1X4W|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
           Hypothetical Protein Flj13222
          Length = 67

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 56  RSRCAQCNAKLTVCSS--FTCRCRKLFCPRHRHPEEHACTFDYKAYG 100
           R RC QC  KL +      +CRC  +FC  HR PE+H CTFD+   G
Sbjct: 15  RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRG 61


>pdb|1X4V|A Chain A, Solution Structure Of The Zf-An1 Domain From Human
          Hypothetical Protein Loc130617
          Length = 63

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 72 FTC-RCRKLFCPRHRHPEEHACTFD 95
           TC RC + FC +HRHP +H C+ +
Sbjct: 28 LTCERCSRNFCIKHRHPLDHDCSGE 52


>pdb|1WFE|A Chain A, Solution Structure Of The 2nd Zf-An1 Domain Of Mouse Riken
           Cdna 2310008m20 Protein
          Length = 86

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 76  CRKLFCPRHRHPEEHACTFDYKAYGRHLLAATNPLV 111
           C K FC RHRH  +H C     A  R  +AAT  LV
Sbjct: 46  CEKNFCLRHRHQSDHDCEKLEVAKPR--MAATQKLV 79


>pdb|3W0F|A Chain A, Crystal Structure Of Mouse Endonuclease Viii-like 3
           (mneil3)
          Length = 287

 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 54  HKRSRCAQCNAKLTVCSSFTCRCRKLFCP 82
           +KR  C QC++K+TVC          FCP
Sbjct: 249 YKRPNCDQCHSKITVCRFGENSRMTYFCP 277


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.132    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,783,004
Number of Sequences: 62578
Number of extensions: 71913
Number of successful extensions: 172
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)