RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11667
(119 letters)
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.80.1.1
Length = 85
Score = 78.4 bits (193), Expect = 1e-20
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 49 VKKTKHKRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGRHLLAATN 108
++ K C C K + +SF CRC FC HR+ E H C +DYK+ GR L N
Sbjct: 18 LQTKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEAN 77
Query: 109 PLVVA 113
P+
Sbjct: 78 PVSGP 82
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 66.0 bits (161), Expect = 5e-16
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 50 KKTKHKRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGRHLLA 105
+ +RC C ++ + + F CRC FC HR+PE H CTFD+K+ G +
Sbjct: 9 PSPPQRPNRCTVCRKRVGL-TGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 65.2 bits (159), Expect = 1e-15
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 50 KKTKHKRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGRHLLA 105
+ +RC CN K+ V F C+C FC HR+PE+H C+FD+K G +
Sbjct: 9 SRPVRPNNRCFSCNKKVGV-MGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPSS 63
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 65.0 bits (158), Expect = 2e-15
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 49 VKKTKHKRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGRHLLA 105
+ K +RC CN K+ V + F CRC FC HR+PE H C FD+K +
Sbjct: 18 LDPPKSTATRCLSCNKKVGV-TGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPSS 73
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Length = 74
Score = 64.6 bits (157), Expect = 2e-15
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 50 KKTKHKRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGR 101
+ K K++RC C K+ + F CRC LFC HR+ ++H C +DYKA
Sbjct: 19 ELPKPKKNRCFMCRKKVG-LTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAS 69
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 67
Score = 63.9 bits (155), Expect = 3e-15
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 50 KKTKHKRSRCAQCNAK--LTVCSSFTCRCRKLFCPRHRHPEEHACTFDYKAYGRHLLA 105
+ + R RC QC K L +CRC +FC HR PE+H CTFD+ G +
Sbjct: 9 RSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPSS 66
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 36.2 bits (83), Expect = 2e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 50 KKTKHKRSRCAQCNAKLTVCSSFTCR-CRKLFCPRHRHPEEHACT 93
K ++C + + TC C + FC +HRHP +H C+
Sbjct: 6 SGRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCS 50
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.80.1.1
Length = 86
Score = 35.2 bits (80), Expect = 8e-04
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 50 KKTKHKRSRCAQCNAKLTVCSSFTC-RCRKLFCPRHRHPEEHACT 93
K +HK C+ + C C K FC RHRH +H C
Sbjct: 19 KTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCE 63
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 75
Score = 32.7 bits (74), Expect = 0.004
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 72 FTC-RCRKLFCPRHRHPEEHACT 93
F C C +FC HR + H C+
Sbjct: 30 FVCDGCSGIFCLEHRSKDSHGCS 52
>2w82_A ORF18, ARDA; DNA mimic, replication inhibitor; 2.80A {Enterococcus
faecalis}
Length = 165
Score = 32.6 bits (74), Expect = 0.015
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 87 PEEHACTFDYKAYGRHL 103
P DY+AYGR L
Sbjct: 131 PASLQNYIDYQAYGRDL 147
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 28.8 bits (63), Expect = 0.45
Identities = 4/27 (14%), Positives = 5/27 (18%)
Query: 60 AQCNAKLTVCSSFTCRCRKLFCPRHRH 86
+C C H H
Sbjct: 1299 VDKQNLCEICDEEDCPAECGGHHHHHH 1325
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces
cerevisiae} PDB: 3mhh_A 3m99_A
Length = 476
Score = 27.6 bits (61), Expect = 0.95
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 50 KKTKHKRSRCAQCNAKLTVCSSFTC-RCRKLFCPRHRHPEEHA 91
K+ +C C+ ++ ++F C +C C H H H+
Sbjct: 42 KEKFLNTMKCGTCH-EINSGATFMCLQCGFCGCWNHSHFLSHS 83
>1n67_A Clumping factor; DEV-IGG, IGG, immunoglobulin, IGSF,
fibrinongen-binding, cell adhesion; 1.90A
{Staphylococcus aureus} SCOP: b.2.3.4 b.2.3.4 PDB:
2vr3_A
Length = 359
Score = 26.7 bits (58), Expect = 2.1
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 18 DLPPSTPRPGKNSPAGGKPTTAGGTTVAGGCVKKTKH 54
+P G S A P AG +A G + +
Sbjct: 77 TVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGN 113
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 25.5 bits (56), Expect = 2.2
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 58 RCAQCNAKLTVCSSFTCRCRKLFCPRHRHP 87
CA C T ++ C + P
Sbjct: 43 VCAVCRLPFPPGDRVTFNGKECMCQKCSLP 72
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo
sapiens} PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 26.1 bits (58), Expect = 3.0
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 47 GCVKKTKHKRSRCAQCNAKLTV 68
GC KK K + + K
Sbjct: 19 GCTKKMKISH-KRLNPDGKSIR 39
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 26.0 bits (56), Expect = 4.4
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 58 RCAQCNAKLTVCSSFTCRCRKLFCP----RHRHPEEHACTFD 95
RC +C A + F R+ C + P ++ D
Sbjct: 96 RCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLD 137
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 25.8 bits (56), Expect = 4.5
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 4/18 (22%)
Query: 32 AGGKPTTAGGTTVAGGCV 49
GK + +GG G C
Sbjct: 309 GAGKSSGSGG----GDCG 322
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 25.3 bits (55), Expect = 5.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 104 LAATNPLVVADKVVRI 119
LAA N L+ VV+I
Sbjct: 219 LAARNILLSEKNVVKI 234
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 25.0 bits (54), Expect = 7.9
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 58 RCAQCNAKLTVCSSFTCRCRKLFCPRHRH 86
C+ C +L F LFC R
Sbjct: 99 TCSTCRNRLVPGDRFHYINGSLFCEHDRP 127
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K
4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Length = 128
Score = 24.6 bits (53), Expect = 8.3
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 48 CVKKTKHKRSRCAQCNAKLTVCSSFTCRCRKLFCPRHRHPEEHAC 92
K +S C +C A+L + CRK C
Sbjct: 85 LASKYNCDKSVCRKCYARLPPRA---TNCRKRKCGHTNQLRPKKK 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.418
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,803,242
Number of extensions: 96809
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 49
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)