BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1167
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BSK|B Chain B, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|D Chain D, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|F Chain F, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
Length = 90
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 12 SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKI 71
+ ++ +LE++ AD + R +SACH KC+P Y+E EL+KGE+VCLDRCV+KYL+ HE+
Sbjct: 6 AQQLAAELEVEXXADXYNRXTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERX 65
Query: 72 GKKLTEMSVQQDPDFLKRVEEQN 94
GKKLTE+S QD + KRV++ +
Sbjct: 66 GKKLTELSX-QDEELXKRVQQSS 87
>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space
Chaperone Assembly Tim9.10
Length = 95
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 18 DLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTE 77
+ E+D++ DMF +L + C+ KCI Y EGELNK E+ CLDRCVAKY ET+ ++G+ + +
Sbjct: 25 EAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQK 84
Query: 78 MS 79
M
Sbjct: 85 MG 86
>pdb|2BSK|A Chain A, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|C Chain C, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
pdb|2BSK|E Chain E, Crystal Structure Of The Tim9 Tim10 Hexameric Complex
Length = 89
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 28 FTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQD 83
+ +L+ C L C+ +++ E+ E C + C+ KYL+ ++I + E +QQ+
Sbjct: 21 YNKLTETCFLDCV-KDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQN 75
>pdb|3DXR|A Chain A, Crystal Structure Of The Yeast Inter-Membrane Space
Chaperone Assembly Tim9.10
Length = 89
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 6 GNMDPASMKIVQDL----EIDMMAD---MFTRLSSACHLKCIPREYREGELNKGEAVCLD 58
G+MD + K Q+ E M D +++ L C C+ ++ +L E C+
Sbjct: 1 GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVN-DFTTSKLTNKEQTCIM 59
Query: 59 RCVAKYLETHEKIGKKLTEMSV 80
+C K+L+ E++G++ E +
Sbjct: 60 KCSEKFLKHSERVGQRFQEQNA 81
>pdb|2NY8|X Chain X, Nmr Structure Of Antibacterial Defensin Def-Aaa From The
Insect Anopheles Gambiae
Length = 40
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 24 MADMFTRLSSACHLKCIPREYREGELNKGEAVCLDR 59
+A F SS C CI R YR G N +AVC+ R
Sbjct: 5 LASGFGVGSSLCAAHCIARRYRGGYCNS-KAVCVCR 39
>pdb|3CJH|A Chain A, Tim8-Tim13 Complex
pdb|3CJH|C Chain C, Tim8-Tim13 Complex
pdb|3CJH|E Chain E, Tim8-Tim13 Complex
pdb|3CJH|G Chain G, Tim8-Tim13 Complex
pdb|3CJH|I Chain I, Tim8-Tim13 Complex
pdb|3CJH|K Chain K, Tim8-Tim13 Complex
Length = 64
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 26 DMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGK 73
++ ++S C KC+ Y + +A C+D+C+AKY+ + I K
Sbjct: 7 ELVNKISENCFEKCLTSPY----ATRNDA-CIDQCLAKYMRSWNVISK 49
>pdb|3CJH|B Chain B, Tim8-Tim13 Complex
pdb|3CJH|D Chain D, Tim8-Tim13 Complex
pdb|3CJH|F Chain F, Tim8-Tim13 Complex
pdb|3CJH|H Chain H, Tim8-Tim13 Complex
pdb|3CJH|J Chain J, Tim8-Tim13 Complex
pdb|3CJH|L Chain L, Tim8-Tim13 Complex
Length = 64
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 20 EIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKL 75
++ M FT + C KC+ + L+ E CL CV ++L+T+ +I L
Sbjct: 9 KVQMSIHQFTNI---CFKKCVE-SVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGL 60
>pdb|2NZ3|A Chain A, Nmr Structure Of Def-Acaa, A Mutant Of Anopheles
Defensin Def-Aaa
Length = 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 24 MADMFTRLSSACHLKCIPREYREGELNKGEAVCLDR 59
+A +F + C CI R YR G N +AVC+ R
Sbjct: 5 LASIFNVNHALCAAHCIARRYRGGYCNS-KAVCVCR 39
>pdb|1VMK|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(Tm1596) From Thermotoga Maritima At 2.01 A Resolution
pdb|1VMK|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(Tm1596) From Thermotoga Maritima At 2.01 A Resolution
pdb|1VMK|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(Tm1596) From Thermotoga Maritima At 2.01 A Resolution
Length = 277
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 69 EKIGKKLTEMSVQQDPDFLKRVEEQ 93
EKIG + +MS DP++ ++++E+
Sbjct: 157 EKIGPRFPDMSSVVDPEWARKIQER 181
>pdb|3D4R|A Chain A, Crystal Structure Of A Duf2118 Family Protein (Mmp0046)
From Methanococcus Maripaludis At 2.20 A Resolution
pdb|3D4R|B Chain B, Crystal Structure Of A Duf2118 Family Protein (Mmp0046)
From Methanococcus Maripaludis At 2.20 A Resolution
pdb|3D4R|C Chain C, Crystal Structure Of A Duf2118 Family Protein (Mmp0046)
From Methanococcus Maripaludis At 2.20 A Resolution
pdb|3D4R|D Chain D, Crystal Structure Of A Duf2118 Family Protein (Mmp0046)
From Methanococcus Maripaludis At 2.20 A Resolution
pdb|3D4R|E Chain E, Crystal Structure Of A Duf2118 Family Protein (Mmp0046)
From Methanococcus Maripaludis At 2.20 A Resolution
pdb|3D4R|F Chain F, Crystal Structure Of A Duf2118 Family Protein (Mmp0046)
From Methanococcus Maripaludis At 2.20 A Resolution
Length = 169
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 40 IPREYREGELNKGEAVCLDR 59
IP+ Y EGELN G+ V +++
Sbjct: 22 IPKIYVEGELNDGDRVAIEK 41
>pdb|2E3F|A Chain A, Nmr Structure Of Def-Bat, A Mutant Of Anopheles Defensin
Def-Aaa
Length = 43
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 33 SACHLKCIPREYREGELNKGEAVCLDR 59
S C CI R YR G N G+ VC+ R
Sbjct: 18 SLCAAHCIARRYRGGYCN-GKRVCVCR 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,665,032
Number of Sequences: 62578
Number of extensions: 90840
Number of successful extensions: 241
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)