Query psy1167
Match_columns 99
No_of_seqs 101 out of 705
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 15:51:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3480|consensus 99.9 1E-24 2.2E-29 143.1 10.6 88 1-90 1-89 (90)
2 PF02953 zf-Tim10_DDP: Tim10/D 99.9 2.9E-24 6.4E-29 133.4 8.5 65 13-78 2-66 (66)
3 KOG3489|consensus 99.9 4.9E-22 1.1E-26 129.9 9.9 71 8-80 11-81 (86)
4 KOG1733|consensus 99.9 3.3E-21 7.2E-26 127.8 10.0 69 10-80 21-89 (97)
5 KOG3479|consensus 99.8 1.5E-20 3.2E-25 122.5 7.5 74 17-93 4-77 (83)
6 PF05811 DUF842: Eukaryotic pr 89.2 3.6 7.8E-05 28.5 7.6 59 18-77 67-129 (131)
7 KOG3377|consensus 88.5 4.4 9.5E-05 29.1 7.6 60 18-78 75-138 (143)
8 PF05892 Tricho_coat: Trichovi 61.0 32 0.00068 25.9 5.6 63 10-72 112-179 (194)
9 PF08095 Toxin_25: Hefutoxin f 38.8 3.2 6.9E-05 20.7 -1.8 10 51-60 13-22 (22)
10 PF09889 DUF2116: Uncharacteri 33.7 66 0.0014 19.6 3.0 27 46-72 10-36 (59)
11 TIGR01614 PME_inhib pectineste 33.1 1.5E+02 0.0033 20.3 5.3 37 50-87 91-127 (178)
12 smart00856 PMEI Plant invertas 30.3 1.6E+02 0.0035 19.3 5.4 32 49-80 65-96 (148)
13 KOG3377|consensus 25.9 2.6E+02 0.0055 20.1 7.7 46 24-76 34-79 (143)
14 PF05811 DUF842: Eukaryotic pr 24.8 2.4E+02 0.0051 19.4 7.7 44 32-78 30-73 (131)
15 PF09713 A_thal_3526: Plant pr 23.9 1.7E+02 0.0038 17.5 3.8 39 54-94 2-44 (54)
16 KOG3196|consensus 23.9 52 0.0011 25.2 1.6 34 30-63 131-167 (233)
17 PF06644 ATP11: ATP11 protein; 23.8 1.6E+02 0.0034 23.0 4.3 33 46-78 212-253 (266)
18 PF07988 LMSTEN: LMSTEN motif; 23.8 53 0.0012 19.3 1.3 34 58-92 2-35 (48)
19 KOG0869|consensus 22.6 1E+02 0.0022 22.7 2.8 28 37-67 43-70 (168)
20 PHA03019 hypothetical protein; 21.6 72 0.0016 20.3 1.7 30 38-69 25-56 (77)
No 1
>KOG3480|consensus
Probab=99.92 E-value=1e-24 Score=143.13 Aligned_cols=88 Identities=51% Similarity=0.931 Sum_probs=80.3
Q ss_pred CCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1167 1 MASTL-GNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMS 79 (99)
Q Consensus 1 m~~~~-~l~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~ 79 (99)
||.+. ...+.++.+ ++++|++.+.++||+|+..|++|||+..|..++|+++|.+||||||.||+++|..|+++++.++
T Consensus 1 ~~~~~~q~~~~~k~q-~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~ 79 (90)
T KOG3480|consen 1 MALPQPQTVDQQKAQ-MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMG 79 (90)
T ss_pred CCCCcccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444 567788888 8999999999999999999999999978999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHH
Q psy1167 80 VQQDPDFLKRV 90 (99)
Q Consensus 80 ~~~~~~~~~~~ 90 (99)
+ +++..++.+
T Consensus 80 ~-~~e~~~k~~ 89 (90)
T KOG3480|consen 80 Q-GDEAALKKY 89 (90)
T ss_pred C-CcHHHHhhc
Confidence 9 999988754
No 2
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=99.91 E-value=2.9e-24 Score=133.42 Aligned_cols=65 Identities=26% Similarity=0.721 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167 13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78 (99)
Q Consensus 13 ~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~ 78 (99)
.+++++.+++.++++|+++++.||+|||+ +|++++||++|.+||+||++||++++.+|+++|+++
T Consensus 2 ~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~-~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~ 66 (66)
T PF02953_consen 2 QQLMQEQQMKDFQELFNKLTERCFDKCVT-KFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM 66 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999999 699999999999999999999999999999999875
No 3
>KOG3489|consensus
Probab=99.88 E-value=4.9e-22 Score=129.92 Aligned_cols=71 Identities=21% Similarity=0.441 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167 8 MDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV 80 (99)
Q Consensus 8 ~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~ 80 (99)
.++....|.++.|...|+++++.+|++||+|||.+ ++++||++|+.|+.|||+||||++.+|.+||+.+..
T Consensus 11 ~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~--~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~ 81 (86)
T KOG3489|consen 11 DPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEK--PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQ 81 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555667888888899999999999999999994 569999999999999999999999999999998754
No 4
>KOG1733|consensus
Probab=99.86 E-value=3.3e-21 Score=127.80 Aligned_cols=69 Identities=19% Similarity=0.502 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167 10 PASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV 80 (99)
Q Consensus 10 ~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~ 80 (99)
+...+|.+++.+++.++|+++|++.||+|||++ |+++|+++|.+||++|++||||+|+.|++.|..+.+
T Consensus 21 ~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~--PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQ 89 (97)
T KOG1733|consen 21 ELMNQVKQQLAVANAQELVSKISEKCFDKCITK--PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQ 89 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999996 999999999999999999999999999999988654
No 5
>KOG3479|consensus
Probab=99.83 E-value=1.5e-20 Score=122.45 Aligned_cols=74 Identities=18% Similarity=0.532 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHhh
Q psy1167 17 QDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQ 93 (99)
Q Consensus 17 ~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~~~~~~~ 93 (99)
+..+++.|..+||++|+.||.+||+ +|++++|++.|..|+.+|++||+..+++|++||++......++ .++|.+
T Consensus 4 ~~k~lkDFl~~YN~ltE~CF~dCV~-dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~~~~~--a~~~a~ 77 (83)
T KOG3479|consen 4 QIKQLKDFLTLYNKLTELCFSDCVD-DFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAALNQA--AAAEAA 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4567888999999999999999999 8999999999999999999999999999999999987623333 444444
No 6
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=89.25 E-value=3.6 Score=28.54 Aligned_cols=59 Identities=15% Similarity=0.345 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC----CchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy1167 18 DLEIDMMADMFTRLSSACHLKCIPREYREGE----LNKGEAVCLDRCVAKYLETHEKIGKKLTE 77 (99)
Q Consensus 18 ~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~----Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~ 77 (99)
+-++..|++-+++-+-.|.+|=-+ .++.+. ....=..|+..||++|+..--.|.+++..
T Consensus 67 q~El~~FQ~rlqrC~~~C~dk~~d-~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~ 129 (131)
T PF05811_consen 67 QNELEQFQNRLQRCVMHCQDKAKD-KMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 455777898888888888887544 231111 11222589999999999998888888754
No 7
>KOG3377|consensus
Probab=88.50 E-value=4.4 Score=29.09 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167 18 DLEIDMMADMFTRLSSACHLKCIPREYREG----ELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78 (99)
Q Consensus 18 ~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~----~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~ 78 (99)
+-++..|++=.++-+-.|-+|=-. ..+.+ .......+|+.+||++++.+---+.+++-+.
T Consensus 75 ~~El~~FQ~RL~Rc~m~C~Dk~~~-~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~a 138 (143)
T KOG3377|consen 75 QSELGKFQDRLNRCLMVCNDKFEA-SKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEA 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-hcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345677888888888888776432 12222 2344567899999999999998888887654
No 8
>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses.; GO: 0019028 viral capsid
Probab=60.98 E-value=32 Score=25.86 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCC--CCCCCCCCchhHhHHHHHHHHHHHHHHHHHH
Q psy1167 10 PASMKIVQDLEIDMMADMFTRLSSACHLK---CIP--REYREGELNKGEAVCLDRCVAKYLETHEKIG 72 (99)
Q Consensus 10 ~~k~~l~~~~q~~~~~~l~~~lt~~CF~K---CV~--~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~ 72 (99)
+.+.-+.......-+..+|.+++..|++. |.+ +-.+-..|++.|.++|.++-.|-+++-..-+
T Consensus 112 eA~~~L~~l~~~g~~TnL~~Kmp~~g~k~PqV~FDFn~GL~l~~L~~~e~~vIq~ln~RLfrtE~aK~ 179 (194)
T PF05892_consen 112 EAYNFLVKLASMGVYTNLYKKMPKLGGKEPQVMFDFNSGLDLSRLTKEEAKVIQNLNQRLFRTEGAKS 179 (194)
T ss_pred HHHHHHHHHHhcchHhHHHHhhHhhcCCCCeEeeecccCcchhhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444333333444677999999999853 121 0134568899999999999999998876544
No 9
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=38.81 E-value=3.2 Score=20.69 Aligned_cols=10 Identities=40% Similarity=1.086 Sum_probs=5.6
Q ss_pred hhHhHHHHHH
Q psy1167 51 KGEAVCLDRC 60 (99)
Q Consensus 51 ~~E~~Ci~~C 60 (99)
-+|+.|-.+|
T Consensus 13 ~deetck~~c 22 (22)
T PF08095_consen 13 HDEETCKERC 22 (22)
T ss_dssp S-TTHHHHH-
T ss_pred CcHHHHHhcC
Confidence 3467787776
No 10
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=33.72 E-value=66 Score=19.60 Aligned_cols=27 Identities=15% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHH
Q psy1167 46 EGELNKGEAVCLDRCVAKYLETHEKIG 72 (99)
Q Consensus 46 ~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~ 72 (99)
|..+..+|.-|-+.|-+.|..-..+..
T Consensus 10 G~~Ip~~~~fCS~~C~~~~~k~qk~~~ 36 (59)
T PF09889_consen 10 GKPIPPDESFCSPKCREEYRKRQKRMR 36 (59)
T ss_pred CCcCCcchhhhCHHHHHHHHHHHHHHH
Confidence 567778899999999999999888765
No 11
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=33.14 E-value=1.5e+02 Score=20.29 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=28.9
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q psy1167 50 NKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFL 87 (99)
Q Consensus 50 s~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~ 87 (99)
++.+..|++.|.+-|-++...+...+..... -+-.++
T Consensus 91 ~~~~~~al~~C~~~y~~a~~~L~~a~~~l~~-~~~~d~ 127 (178)
T TIGR01614 91 DPRDKSALEDCVELYSDAVDALDKALASLKS-KDYSDA 127 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHH
Confidence 5678999999999999999998887776654 333333
No 12
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=30.33 E-value=1.6e+02 Score=19.31 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=27.2
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167 49 LNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV 80 (99)
Q Consensus 49 Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~ 80 (99)
.++.+..|+..|.+-|-++...+...+.....
T Consensus 65 ~~~~~~~al~~C~~~y~~a~~~L~~a~~~l~~ 96 (148)
T smart00856 65 KDPRLKAALKDCLELYDDAVDSLEKALEELKS 96 (148)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999998888776654
No 13
>KOG3377|consensus
Probab=25.87 E-value=2.6e+02 Score=20.12 Aligned_cols=46 Identities=15% Similarity=0.366 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy1167 24 MADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLT 76 (99)
Q Consensus 24 ~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~ 76 (99)
+|..|.+-...||++ ++.--..-..||++|+....++..++..-+.
T Consensus 34 mQ~~mfrCaa~Ccdd-------~r~~~e~v~~ci~~c~~pl~~aQ~~~~~El~ 79 (143)
T KOG3377|consen 34 MQQAMFRCAAECCDD-------SRASEEAVNCCIECCVPPLTKAQQYVQSELG 79 (143)
T ss_pred HHHHHHHHHHHHHcc-------ccccHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 445555555555543 1221233468999999988887777765544
No 14
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=24.82 E-value=2.4e+02 Score=19.38 Aligned_cols=44 Identities=16% Similarity=0.471 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167 32 SSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78 (99)
Q Consensus 32 t~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~ 78 (99)
.-.|-.+|.+ + ++++. ..=..||.+|..--..+...|..-|...
T Consensus 30 ~f~C~a~Ccd-d-~~~s~-e~V~~Cve~C~~pl~~aq~~vq~El~~F 73 (131)
T PF05811_consen 30 MFKCAAKCCD-D-SSASM-EQVQRCVERCQQPLQQAQNYVQNELEQF 73 (131)
T ss_pred HHHHHHHHhh-C-CCCCH-HHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3456667774 2 22221 2236999999988888888877666543
No 15
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=23.92 E-value=1.7e+02 Score=17.50 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHH----HHHHHhhc
Q psy1167 54 AVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDF----LKRVEEQN 94 (99)
Q Consensus 54 ~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~----~~~~~~~~ 94 (99)
+..|.+|...||.--..|. .+.+.+. -+|.. .+.||++|
T Consensus 2 q~lIErCl~~yMsk~E~v~-~L~~~a~-I~P~~T~~VW~~Le~eN 44 (54)
T PF09713_consen 2 QNLIERCLQLYMSKEECVR-ALQKQAN-IEPVFTSTVWQKLEKEN 44 (54)
T ss_pred chHHHHHHHHcCCHHHHHH-HHHHHcC-CChHHHHHHHHHHHHHC
Confidence 3578888888887655554 6666554 55544 46677766
No 16
>KOG3196|consensus
Probab=23.86 E-value=52 Score=25.20 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=26.0
Q ss_pred HHHHHHHHhhCCC---CCCCCCCchhHhHHHHHHHHH
Q psy1167 30 RLSSACHLKCIPR---EYREGELNKGEAVCLDRCVAK 63 (99)
Q Consensus 30 ~lt~~CF~KCV~~---~~~~~~Ls~~E~~Ci~~Cv~K 63 (99)
.+.+.|-++|-.+ .-++...|-.|..|+-+||+-
T Consensus 131 ~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvna 167 (233)
T KOG3196|consen 131 DILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNA 167 (233)
T ss_pred HHHHHHHHHhCccccccccccceeeecchhhhhhccC
Confidence 5788899998752 025667788899999999963
No 17
>PF06644 ATP11: ATP11 protein; InterPro: IPR010591 This family consists of several eukaryotic ATP11 proteins. The expression of functional F1-ATPase requires two proteins which are encoded by the ATP11 and ATP12 genes []. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, which is the catalytic unit of ATP synthase. It binds to the free beta subunits of F1, which prevents the beta subunit from associating with itself in non-productive complex. It also allows for the formation of a (alpha beta)3 hexamer []. ; GO: 0006461 protein complex assembly, 0005739 mitochondrion; PDB: 2P4F_A.
Probab=23.84 E-value=1.6e+02 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCCCchhHhHHHHHHHHHHH---------HHHHHHHHHHHhh
Q psy1167 46 EGELNKGEAVCLDRCVAKYL---------ETHEKIGKKLTEM 78 (99)
Q Consensus 46 ~~~Ls~~E~~Ci~~Cv~Ky~---------~t~~~v~~~~~~~ 78 (99)
+..|+..|..|+-+|+.+|. +-...+.+.|...
T Consensus 212 ~~~ls~~eAq~L~~~lQ~FY~~~~~~~~~~~~~~ll~~Fn~~ 253 (266)
T PF06644_consen 212 DSGLSKQEAQLLVNQLQRFYAAGEEGEDDKERYKLLETFNKG 253 (266)
T ss_dssp TSS--HHHHHHHHHHHHHHTGGG--SHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHcCC
Confidence 34499999999999999999 3334466666655
No 18
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=23.80 E-value=53 Score=19.29 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHh
Q psy1167 58 DRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEE 92 (99)
Q Consensus 58 ~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~~~~~~ 92 (99)
.||++----+..+|.+.|..--. --++.+++||.
T Consensus 2 ~nci~~~q~~~a~iq~~~~dddp-dkekrikelel 35 (48)
T PF07988_consen 2 DNCIEHPQPSTAFIQQPFIDDDP-DKEKRIKELEL 35 (48)
T ss_dssp --------------------------HHHHHHHHH
T ss_pred cchhcccchhhHHHhccccCCCh-hHHHHHHHHHH
Confidence 35666666667778777766444 55778888774
No 19
>KOG0869|consensus
Probab=22.64 E-value=1e+02 Score=22.68 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=22.8
Q ss_pred HhhCCCCCCCCCCchhHhHHHHHHHHHHHHH
Q psy1167 37 LKCIPREYREGELNKGEAVCLDRCVAKYLET 67 (99)
Q Consensus 37 ~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t 67 (99)
++=++ +..+++++-+.|+.-||.-||-+
T Consensus 43 K~~lP---~naKIsKDAKE~vQECVSEfISF 70 (168)
T KOG0869|consen 43 KKALP---ANAKISKDAKETVQECVSEFISF 70 (168)
T ss_pred HhcCC---cccccchHHHHHHHHHHHHHHHH
Confidence 34455 47899999999999999999853
No 20
>PHA03019 hypothetical protein; Provisional
Probab=21.56 E-value=72 Score=20.30 Aligned_cols=30 Identities=23% Similarity=0.549 Sum_probs=19.9
Q ss_pred hhCCCCCCCCCCchhH--hHHHHHHHHHHHHHHH
Q psy1167 38 KCIPREYREGELNKGE--AVCLDRCVAKYLETHE 69 (99)
Q Consensus 38 KCV~~~~~~~~Ls~~E--~~Ci~~Cv~Ky~~t~~ 69 (99)
.|+. +|++. |...| .+=-++|+++|++.-.
T Consensus 25 ~c~k-n~nd~-l~aee~lknlnd~~in~~ld~~k 56 (77)
T PHA03019 25 ECEK-NFNDA-LLAEENLKNLNDHCINKFLDFKK 56 (77)
T ss_pred HHHH-HHHHH-HHhHHHHhhhhHHHHHHHHHHHH
Confidence 5776 56543 33443 4677999999998753
Done!