Query psy1167
Match_columns 99
No_of_seqs 101 out of 705
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 15:51:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bsk_B Mitochondrial import in 99.9 2.3E-27 7.7E-32 155.7 5.5 82 8-90 2-83 (90)
2 3dxr_A Mitochondrial import in 99.9 3.1E-26 1.1E-30 150.1 9.1 75 5-80 4-81 (89)
3 3cjh_B Mitochondrial import in 99.9 7.1E-26 2.4E-30 140.2 7.2 63 15-78 1-63 (64)
4 3dxr_B Mitochondrial import in 99.9 1.6E-25 5.3E-30 148.7 8.0 73 7-80 15-87 (95)
5 2bsk_A Mitochondrial import in 99.9 6.5E-25 2.2E-29 143.9 8.5 71 17-89 10-80 (89)
6 3cjh_A Mitochondrial import in 99.9 6.4E-22 2.2E-26 122.7 5.9 55 21-80 2-56 (64)
7 1ter_A Tertiapin; toxin; NMR { 48.7 5.8 0.0002 19.5 0.7 10 33-42 12-21 (26)
8 1x91_A Invertase/pectin methyl 39.9 72 0.0024 20.3 5.6 37 50-87 65-101 (153)
9 1xg2_B Pectinesterase inhibito 37.4 78 0.0027 20.0 5.4 37 50-87 65-101 (153)
10 2plx_B Peptide inhibitor; heli 26.8 23 0.00079 17.3 0.9 7 54-60 18-24 (26)
11 2dqa_A Lysozyme; enzyme, subst 21.7 55 0.0019 21.8 2.3 16 54-69 64-79 (124)
12 2p4f_A Similar to SP|P32453 sa 21.5 72 0.0025 24.3 3.1 33 46-78 239-281 (299)
No 1
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.94 E-value=2.3e-27 Score=155.67 Aligned_cols=82 Identities=56% Similarity=1.066 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q psy1167 8 MDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFL 87 (99)
Q Consensus 8 ~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~ 87 (99)
+++....++++++++.++++||+||+.||+|||+++|++++|+++|.+||+|||+||+++|.+|+++|++++. ++.+-+
T Consensus 2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~-~~~e~~ 80 (90)
T 2bsk_B 2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSM-QDEELM 80 (90)
T ss_dssp -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567778899999999999999999999999996579999999999999999999999999999999999988 666666
Q ss_pred HHH
Q psy1167 88 KRV 90 (99)
Q Consensus 88 ~~~ 90 (99)
+++
T Consensus 81 ~~~ 83 (90)
T 2bsk_B 81 KRV 83 (90)
T ss_dssp ---
T ss_pred Hhc
Confidence 554
No 2
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-26 Score=150.12 Aligned_cols=75 Identities=17% Similarity=0.514 Sum_probs=60.8
Q ss_pred CCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167 5 LGNMDPASMKI---VQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV 80 (99)
Q Consensus 5 ~~l~~~~k~~l---~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~ 80 (99)
.+|++.++.++ +++.+++.+..+||+||+.||+|||+ +|++++||++|.+||+|||+||++++.+|+++|++.++
T Consensus 4 ~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 4 DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVN-DFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888875 56677778899999999999999999 69999999999999999999999999999999999877
No 3
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.1e-26 Score=140.16 Aligned_cols=63 Identities=21% Similarity=0.477 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167 15 IVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78 (99)
Q Consensus 15 l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~ 78 (99)
|.+++++++++++||+||+.||+|||+ +||+++||++|.+||+|||+||++++.+|+++|+++
T Consensus 1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 1 LEGENSKQKVQMSIHQFTNICFKKCVE-SVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999998 699999999999999999999999999999999876
No 4
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-25 Score=148.70 Aligned_cols=73 Identities=42% Similarity=0.833 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167 7 NMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV 80 (99)
Q Consensus 7 l~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~ 80 (99)
.+++++-. +++.|+++++++||+||+.||+|||+++|++++|+++|.+||+|||+||+++|++|+++|+++++
T Consensus 15 ~~~~qk~~-~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 15 LSSQQKIQ-AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp --CTTTTH-HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 78999999999999999999999999669999999999999999999999999999999999876
No 5
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.92 E-value=6.5e-25 Score=143.88 Aligned_cols=71 Identities=23% Similarity=0.580 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHH
Q psy1167 17 QDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKR 89 (99)
Q Consensus 17 ~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~~~ 89 (99)
+..++++|+++||+||+.||+|||+ +||+++|+++|.+||+|||+||++++.+|+++|+++.+ ++...+++
T Consensus 10 q~~q~~~~~~l~n~lte~Cf~KCv~-~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~-~~~~~~~~ 80 (89)
T 2bsk_A 10 QIKQFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI-QQNEALAA 80 (89)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4556677999999999999999998 79999999999999999999999999999999999998 55555444
No 6
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.4e-22 Score=122.67 Aligned_cols=55 Identities=22% Similarity=0.552 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167 21 IDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV 80 (99)
Q Consensus 21 ~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~ 80 (99)
.++++++||+||+.||+|||++ + ||++|.+||+|||+||++++++|+++|.++.+
T Consensus 2 ~a~~~~l~~~lt~~Cf~kCv~~--~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 56 (64)
T 3cjh_A 2 VANATELVNKISENCFEKCLTS--P---YATRNDACIDQCLAKYMRSWNVISKAYISRIQ 56 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHCCT--T---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHCCC--c---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999984 3 99999999999999999999999999999876
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=48.67 E-value=5.8 Score=19.55 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=8.0
Q ss_pred HHHHHhhCCC
Q psy1167 33 SACHLKCIPR 42 (99)
Q Consensus 33 ~~CF~KCV~~ 42 (99)
..||+||-.+
T Consensus 12 hmcwkkcgkk 21 (26)
T 1ter_A 12 HMCWKKCGKK 21 (26)
T ss_dssp HHHHHHHHCC
T ss_pred hHHHHHhCcc
Confidence 5799999763
No 8
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=39.88 E-value=72 Score=20.33 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=30.4
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q psy1167 50 NKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFL 87 (99)
Q Consensus 50 s~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~ 87 (99)
++.+..++..|.+-|-++-..+...+..... -+..++
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~-~~~~d~ 101 (153)
T 1x91_A 65 DPRSKLAYRSCVDEYESAIGNLEEAFEHLAS-GDGMGM 101 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHH
Confidence 5788999999999999999999998887765 444443
No 9
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=37.44 E-value=78 Score=20.04 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=30.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q psy1167 50 NKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFL 87 (99)
Q Consensus 50 s~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~ 87 (99)
++.+..++..|.+-|-++-..+...+..... -+...+
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~-~~~~d~ 101 (153)
T 1xg2_B 65 DPKLKGRYETCSENYADAIDSLGQAKQFLTS-GDYNSL 101 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHH
Confidence 5788999999999999999999988887765 444444
No 10
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=26.82 E-value=23 Score=17.34 Aligned_cols=7 Identities=57% Similarity=1.398 Sum_probs=5.5
Q ss_pred hHHHHHH
Q psy1167 54 AVCLDRC 60 (99)
Q Consensus 54 ~~Ci~~C 60 (99)
..|++||
T Consensus 18 rrcldnc 24 (26)
T 2plx_B 18 RRCLDNC 24 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 4788888
No 11
>2dqa_A Lysozyme; enzyme, substrate complex, hydrolase; HET: NAG BGC; 1.60A {Tapes japonica}
Probab=21.75 E-value=55 Score=21.82 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHH
Q psy1167 54 AVCLDRCVAKYLETHE 69 (99)
Q Consensus 54 ~~Ci~~Cv~Ky~~t~~ 69 (99)
-.|..+||..||.-+.
T Consensus 64 ~~Ca~~tV~~Ym~ry~ 79 (124)
T 2dqa_A 64 INCSSKCVQQYMKRYA 79 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6788999999987554
No 12
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}
Probab=21.51 E-value=72 Score=24.27 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=26.0
Q ss_pred CCCCchhHhHHHHHHHHHHHHHH----------HHHHHHHHhh
Q psy1167 46 EGELNKGEAVCLDRCVAKYLETH----------EKIGKKLTEM 78 (99)
Q Consensus 46 ~~~Ls~~E~~Ci~~Cv~Ky~~t~----------~~v~~~~~~~ 78 (99)
++.|+..|..|+-+|+.+|.... ..+.+.|...
T Consensus 239 ~~~ls~~eAq~Lv~~lQ~FY~~~~~~~~~~~~r~~Lv~~Fn~~ 281 (299)
T 2p4f_A 239 DSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKG 281 (299)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHhCC
Confidence 46799999999999999999763 4456666655
Done!