RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1167
(99 letters)
>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger. Putative
zinc binding domain with four conserved cysteine
residues. This domain is found in the human disease
protein TIMM8A. Members of this family such as Tim9 and
Tim10 are involved in mitochondrial protein import.
Members of this family seem to be localised to the
mitochondrial intermembrane space.
Length = 66
Score = 75.3 bits (186), Expect = 8e-20
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIG 72
+++Q+L+ ++ +L+ C KC+ + + L+KGE CLDRCV KYL+ + ++
Sbjct: 2 QQLMQELQKANFQELINKLTENCFKKCVTK-FPGSSLSKGEESCLDRCVEKYLDANNRVS 60
Query: 73 KKLTEM 78
K+L E
Sbjct: 61 KRLQER 66
>gnl|CDD|239676 cd03705, EF1_alpha_III, Domain III of EF-1. Eukaryotic elongation
factor 1 (EF-1) is responsible for the GTP-dependent
binding of aminoacyl-tRNAs to ribosomes. EF-1 is
composed of four subunits: the alpha chain, which binds
GTP and aminoacyl-tRNAs, the gamma chain that probably
plays a role in anchoring the complex to other cellular
components and the beta and delta (or beta') chains.
This family is the alpha subunit, and represents the
counterpart of bacterial EF-Tu for the archaea (aEF-1
alpha) and eukaryotes (eEF-1 alpha).
Length = 104
Score = 26.0 bits (58), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 62 AKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIKP 99
++ E KI + T ++++P FLK + VKI P
Sbjct: 36 CRFAEILSKIDPR-TGKKLEENPKFLKSGDAAIVKIVP 72
>gnl|CDD|201595 pfam01097, Defensin_2, Arthropod defensin.
Length = 29
Score = 24.3 bits (53), Expect = 2.7
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 33 SACHLKCIPREYREGELNKGEAVC 56
SAC C+ + R G N G+ VC
Sbjct: 4 SACAAHCLSKGRRGGYCN-GKGVC 26
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also
known as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 26.0 bits (58), Expect = 2.9
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 65 LETHEKIGKKLTEMSVQQDPDFLKR 89
LE G+ +TE+S + +R
Sbjct: 20 LEQEVPKGETITELSAADKLEEFRR 44
>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast
Cancer Anti-estrogen Resistance protein 3. BCAR3 is
part of a growing family of guanine nucleotide exchange
factors is responsible for activation of Ras-family
GTPases, including Sos1 and 2, GRF1 and 2,
CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2,
PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS,
RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558
21262352 BCAR3 binds to the carboxy-terminus of
BCAR1/p130Cas, a focal adhesion adapter protein. Over
expression of BCAR1 (p130Cas) and BCAR3 induces
estrogen independent growth in normally
estrogen-dependent cell lines. They have been linked to
resistance to anti-estrogens in breast cancer, Rac
activation, and cell motility, though the BCAR3/p130Cas
complex is not required for this activity in BCAR3.
Many BCAR3-mediated signaling events in epithelial and
mesenchymal cells are independent of p130Cas
association. Structurally these proteins contain a
single SH2 domain upstream of their RasGEF domain,
which is responsible for the ability of BCAR3 to
enhance p130Cas over-expression-induced migration. In
general SH2 domains are involved in signal
transduction. They typically bind pTyr-containing
ligands via two surface pockets, a pTyr and hydrophobic
binding pocket, allowing proteins with SH2 domains to
localize to tyrosine phosphorylated sites.
Length = 136
Score = 25.8 bits (57), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 68 HEKIGKKLTEMSVQQDPDFLKR 89
H +I +++ E VQ++ DFL R
Sbjct: 10 HGRIPRQVAESLVQREGDFLVR 31
>gnl|CDD|131546 TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An
iron-sulfur protein with a radical-SAM domain
(pfam04055). A single glycine residue in EC 2.3.1.54,
formate C-acetyltransferase (formate-pyruvate lyase), is
oxidized to the corresponding radical by transfer of H
from its CH2 to AdoMet with concomitant cleavage of the
latter. The reaction requires Fe2+. The first stage is
reduction of the AdoMet to give methionine and the
5'-deoxyadenosin-5-yl radical, which then abstracts a
hydrogen radical from the glycine residue [Energy
metabolism, Anaerobic, Protein fate, Protein
modification and repair].
Length = 235
Score = 25.8 bits (57), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 66 ETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKI 97
+ + KKLT +S+Q DF K + ++N I
Sbjct: 128 HFNPEKYKKLTGVSLQPTLDFAKYLAKRNKPI 159
>gnl|CDD|238690 cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and MBD4 are members
of a protein family that share the methyl-CpG-binding
domain (MBD). The MBD, consists of about 70 residues
and is defined as the minimal region required for
binding to methylated DNA by a methyl-CpG-binding
protein which binds specifically to methylated DNA. The
MBD can recognize a single symmetrically methylated CpG
either as naked DNA or within chromatin. MeCP2, MBD1
and MBD2 (and likely MBD3) form complexes with histone
deacetylase and are involved in histone
deacetylase-dependent repression of transcription. MBD4
is an endonuclease that forms a complex with the DNA
mismatch-repair protein MLH1.
Length = 77
Score = 25.0 bits (55), Expect = 3.9
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 61 VAKYLETHEKIGKKLTEMSVQQD 83
+A+YLE + L++
Sbjct: 44 LARYLEKNGPTSLDLSDFDFTVP 66
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 25.7 bits (57), Expect = 5.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 67 THEKIGKKL---TEMSVQQDPDFLKRVEEQNVKIKP 99
T E++ KKL T +++P F+K + VKIKP
Sbjct: 350 TFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKP 385
>gnl|CDD|221201 pfam11744, ALMT, Aluminium activated malate transporter.
Length = 399
Score = 25.4 bits (56), Expect = 6.1
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 54 AVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDF 86
A L+ CV +Y E E L DP +
Sbjct: 189 ANSLEGCVDEYFEEVEYERSILEYEDPSDDPLY 221
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 25.2 bits (56), Expect = 6.9
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 57 LDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKI 97
+D + E K+L E + + DP +E KI
Sbjct: 423 IDIDFEEAKAELEAQFKRLREEAAKIDPSLEGALEANEAKI 463
>gnl|CDD|227685 COG5398, COG5398, Heme oxygenase [Inorganic ion transport and
metabolism].
Length = 238
Score = 25.2 bits (55), Expect = 6.9
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEA 54
M++ Q+LE +++ + C+ R Y G A
Sbjct: 198 MQMFQELEGNLIKAIGKFS-----FNCLTRLYEPGSTEADSA 234
>gnl|CDD|235486 PRK05472, PRK05472, redox-sensing transcriptional repressor Rex;
Provisional.
Length = 213
Score = 25.1 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 69 EKIGKKLTEMSVQQDPDFLKR-VEEQNVKI 97
EKIG K+ + V D L+ V+E +++I
Sbjct: 121 EKIGTKIGGIPV-YHIDELEEVVKENDIEI 149
>gnl|CDD|237135 PRK12555, PRK12555, chemotaxis-specific methylesterase;
Provisional.
Length = 337
Score = 24.8 bits (55), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 10 PASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGE 48
PA++ IVQ ++ A M L L RE REGE
Sbjct: 180 PAAIVIVQHVDAAFAAGMAEWLDGQTALPV--REAREGE 216
>gnl|CDD|234768 PRK00450, dapF, diaminopimelate epimerase; Provisional.
Length = 274
Score = 24.8 bits (55), Expect = 9.4
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 59 RCVAKYLETHEKIGKKLTEMSVQ 81
RC A++L +EK TE+ V+
Sbjct: 78 RCFARFL--YEKGLTNKTEIRVE 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,741,256
Number of extensions: 374242
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 18
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)