RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1167
(99 letters)
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 90
Score = 95.5 bits (237), Expect = 1e-27
Identities = 49/87 (56%), Positives = 70/87 (80%), Gaps = 2/87 (2%)
Query: 8 MDPASMK-IVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
MDP + + +LE++MMADM+ R++SACH KC+P Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60
Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQ 93
HE++GKKLTE+S QD + +KRV++
Sbjct: 61 IHERMGKKLTELS-MQDEELMKRVQQS 86
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces
cerevisiae}
Length = 95
Score = 90.8 bits (225), Expect = 1e-25
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 1 MASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRC 60
+ + E+D++ DMF +L + C+ KCI Y EGELNK E+ CLDRC
Sbjct: 8 FGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRC 67
Query: 61 VAKYLETHEKIGKKLTEMSVQQ 82
VAKY ET+ ++G+ + +M
Sbjct: 68 VAKYFETNVQVGENMQKMGQSF 89
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A;
protein transport, mitochondrial protein import, TIM
complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Length = 89
Score = 58.9 bits (142), Expect = 3e-13
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 12 SMKIVQDLEIDMMAD---MFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETH 68
+ +I + +I + + +L+ C L C+ ++ E+ E C + C+ KYL+
Sbjct: 2 AAQIPESDQIKQFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMT 60
Query: 69 EKIGKKLTEMSVQQ 82
++I + E +QQ
Sbjct: 61 QRISMRFQEYHIQQ 74
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9;
alpha-propeller, helix-turn-helix, intramolecular
disulfides., chaperone; 2.50A {Saccharomyces
cerevisiae}
Length = 89
Score = 56.5 bits (136), Expect = 2e-12
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIG 72
K+V+ ++ +++ L C C+ ++ +L E C+ +C K+L+ E++G
Sbjct: 15 QKVVEQKQMKDFMRLYSNLVERCFTDCVN-DFTTSKLTNKEQTCIMKCSEKFLKHSERVG 73
Query: 73 KKLTEMSVQQ 82
++ E +
Sbjct: 74 QRFQEQNAAL 83
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 40.2 bits (94), Expect = 3e-06
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 23 MMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78
+ + ++ C KC+ + L+ E CL CV ++L+T+ +I L
Sbjct: 9 KVQMSIHQFTNICFKKCVES-VNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic
heterohexamer, chaperone, M binding, mitochondrion,
protein transport; 2.60A {Saccharomyces cerevisiae}
Length = 64
Score = 30.6 bits (69), Expect = 0.019
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 27 MFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLET 67
+ ++S C KC+ Y C+D+C+AKY+ +
Sbjct: 8 LVNKISENCFEKCLTSPY-----ATRNDACIDQCLAKYMRS 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.087
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 18/104 (17%)
Query: 1 MASTLGNMDPASMKIVQDLEIDMMADM-------FTR--LSSACHLKCIPREYREGELNK 51
M G I+ E + + + LS E ++K
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--------EEIDHIIMSK 58
Query: 52 GEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLK-RVEEQN 94
R L E++ +K E ++ + FL ++ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 26.4 bits (59), Expect = 1.5
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 21 IDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKI 71
+ L HL C P +R GE + E + R A+ LE E I
Sbjct: 177 KPYNSVFGLPLPGFVHLTC-PHYWRYGEEGETEEQFVARL-ARELE--ETI 223
>2e3e_A Defensin, mutant DEF-BBB; insect defensin, CSAB motif,
antibacterial, antimicrobial protein; NMR {Anopheles
gambiae} PDB: 2e3f_A 2ny9_X
Length = 45
Score = 25.0 bits (54), Expect = 1.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 33 SACHLKCIPREYREGELNKGEAVCLDR 59
S C C+ + YR G C D+
Sbjct: 18 SLCAAHCLVKGYRGGYCKNKICHCRDK 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.6
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 26/82 (31%)
Query: 3 STLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIP----------REYREGELNKG 52
S L + PAS I +DL + ++ F +A ++ IP R G +++
Sbjct: 429 SHL--LVPASDLINKDLVKNNVS--F----NAKDIQ-IPVYDTFDGSDLRVL-SGSISER 478
Query: 53 --EAVCLDRC----VAKYLETH 68
+ + ++ TH
Sbjct: 479 IVDCIIRLPVKWETTTQFKATH 500
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia
terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Length = 40
Score = 24.2 bits (52), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 33 SACHLKCIPREYREGELNKGEAVCLDR 59
SAC C+ R R G N G+ VC+ R
Sbjct: 14 SACAAHCLLRGNRGGYCN-GKGVCVCR 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 3.2
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 42 REYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIK 98
RE + L + LD + + ++ E + + ++ +R EQ K K
Sbjct: 91 REEQRKRLQE-----LD-------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription;
2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Length = 214
Score = 25.5 bits (56), Expect = 3.4
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 15 IVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKK 74
V D ++ + + + H IP + L + + L+ K
Sbjct: 103 TVSDHFVERLDQLLDYPKACPHGGTIP--AKGELLVEKHKLTLEEA---------KEKGD 151
Query: 75 LTEMSVQQDPDFLKRVEEQNVKI 97
V + D L +E +++
Sbjct: 152 YILARVHDNFDLLTYLERNGLQV 174
>2e3g_A Defensin, mutant DEF-DAA; insect defensin, CSAB motif,
antibacterial, antimicrobial protein; NMR {Anopheles
gambiae} PDB: 2nz3_A
Length = 40
Score = 23.8 bits (51), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 33 SACHLKCIPREYREGELNKGEAVCLDR 59
+ C CI R YR G N +AVC+ R
Sbjct: 14 TLCAAHCIARRYRGGYCN-SKAVCVCR 39
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 23.8 bits (51), Expect = 7.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 66 ETHEKIGKKLTEMSVQQDPDFL 87
+ KKLTE + +DP FL
Sbjct: 5 SSGALFHKKLTEGVLMRDPKFL 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,454,197
Number of extensions: 72642
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 36
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)