RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1167
         (99 letters)



>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane
          translocase subunit Tim10 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 65

 Score = 83.6 bits (207), Expect = 1e-23
 Identities = 42/65 (64%), Positives = 58/65 (89%)

Query: 19 LEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78
          LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+ HE++GKKLTE+
Sbjct: 1  LEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL 60

Query: 79 SVQQD 83
          S+Q +
Sbjct: 61 SMQDE 65


>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane
          translocase subunit Tim9 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 73

 Score = 59.8 bits (145), Expect = 3e-14
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 EIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMS 79
          +       + +L+  C L C+  ++   E+   E  C + C+ KYL+  ++I  +  E  
Sbjct: 1  QFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYH 59

Query: 80 VQQD 83
          +QQ+
Sbjct: 60 IQQN 63


>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae)
          [TaxId: 34676]}
          Length = 40

 Score = 25.9 bits (57), Expect = 0.24
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 32 SSACHLKCIPREYREGELNKGEAVCLDR 59
           SAC   C+ R  R G  N G+ VC+ R
Sbjct: 13 HSACAAHCLLRGNRGGYCN-GKGVCVCR 39


>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 148

 Score = 23.9 bits (51), Expect = 4.3
 Identities = 6/46 (13%), Positives = 15/46 (32%)

Query: 12  SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCL 57
           ++++  D  +    +     S+A     +      G    G+   L
Sbjct: 87  NLQLRPDAVVANDIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 132


>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}
          Length = 163

 Score = 23.5 bits (50), Expect = 4.5
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 2   ASTLGNMDPASMKIVQDLE----IDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCL 57
            +  GN +  + KI + +     +D+      + +    +  +      G+L       L
Sbjct: 8   GTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFL 67

Query: 58  DRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIK 98
               A     ++ IG             F + +     K K
Sbjct: 68  GTLEASDFA-NKTIGLVGLGDQDTYSETFAEGIFHIYEKAK 107


>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
          yoelii [TaxId: 5861]}
          Length = 357

 Score = 23.7 bits (50), Expect = 4.9
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 63 KYLETHEKIGKKLTEMSVQQDPDFLKR 89
          K+L+  +     L  MS ++  +  +R
Sbjct: 3  KFLKKEDVQNIDLNGMSKKERYEIWRR 29


>d1p4ea2 d.163.1.1 (A:136-422) Flp recombinase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 287

 Score = 23.0 bits (49), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 2  ASTLGNMDPASMKIVQD 18
           S + N+DP S K+VQ+
Sbjct: 57 FSDIKNVDPKSFKLVQN 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,446
Number of extensions: 14441
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 13
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)