BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11674
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|D Chain D, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 134
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIV 123
D +V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+RLLMRR+ V
Sbjct: 10 DKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQV 69
Query: 124 HKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEV 159
KICANH++ DM+L P + ++++W A DYADE+
Sbjct: 70 LKICANHYISPDMKLTPNAGSDRSFVWHALDYADEL 105
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
Human Ranbp2
Length = 130
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 67/88 (76%), Gaps = 2/88 (2%)
Query: 72 TGEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 129
+GEE+E VL+ QR KL+RF + +WKERG+G LK+LKN+ GK+R+LMRR+ V K+CAN
Sbjct: 2 SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCAN 61
Query: 130 HFLHQDMELKPMPNTKQAYIWFAQDYAD 157
H++ M LKP+ + +A++W A D++D
Sbjct: 62 HWITTTMNLKPLSGSDRAWMWLASDFSD 89
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDK----EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
+ T EE+E LF+ RAKL+RF + EWKERG G +KLLK+K+ G +RLLMRRD K
Sbjct: 38 IKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLK 97
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQ-DYADEV 159
ICANH++ MELKP + +A++W D+ADE
Sbjct: 98 ICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
Length = 140
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 70 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 127
V T EE+E VL++ RAKL+RF KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 15 VKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 74
Query: 128 ANHFLHQDMELKPMPNTKQAYIW 150
ANH + + LKP + +++++
Sbjct: 75 ANHIIAPEYTLKPNVGSDRSWVY 97
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 70 VTTGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 127
V T EE+E VL++ RAKL+RF D KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 66 VKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 125
Query: 128 ANHFLHQDMELKPMPNTKQAYIW 150
ANH + + LKP + +++++
Sbjct: 126 ANHIIAPEYTLKPNVGSDRSWVY 148
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 141
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 70 VTTGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 127
V T EE+E VL++ RAKL+RF D KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 16 VKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 75
Query: 128 ANHFLHQDMELKPMPNTKQAYIW 150
ANH + + LKP + +++++
Sbjct: 76 ANHIIAPEYTLKPNVGSDRSWVY 98
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|B Chain B, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|B Chain B, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|B Chain B, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 140
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 70 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 127
V T EE+E VL++ RAKL+RF KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 15 VKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 74
Query: 128 ANHFLHQDMELKPMPNTKQAYIW 150
ANH + + LKP + +++++
Sbjct: 75 ANHIIAPEYTLKPNVGSDRSWVY 97
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
pdb|3N7C|B Chain B, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHKI 126
+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKVR+L R + +
Sbjct: 3 LTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGHV 62
Query: 127 CANHFLHQDMELKPM 141
N + + + +P+
Sbjct: 63 LLNTSVVKSFKYQPI 77
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 25 PVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKV 70
+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKV
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKV 50
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHKI 126
+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKVR+L R + +
Sbjct: 3 LTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGHV 62
Query: 127 CANHFLHQDMELKPM 141
N + + + +P+
Sbjct: 63 LLNTSVVKSFKYQPI 77
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 25 PVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNK-DTGKV 70
+T GEENE VLF ++AKL F K + RGVG+LKLL+ K D GKV
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKV 50
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding
Protein-3
Length = 150
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 70 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDIV 123
V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 19 VITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGS 78
Query: 124 HKICANHFLHQDMEL 138
++ N L M++
Sbjct: 79 LRLILNTKLWAQMQI 93
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L
Sbjct: 13 LLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRL 56
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|C Chain C, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|D Chain D, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
Length = 138
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 70 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDIV 123
V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 7 VITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGS 66
Query: 124 HKICANHFLHQDMEL 138
++ N L M++
Sbjct: 67 LRLILNTKLWAQMQI 81
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 24 VPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
V V TGEE E+ + + + KL+ F + W ERG G L+L
Sbjct: 5 VEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRL 44
>pdb|2EC1|A Chain A, Solution Structure Of The Ranbd1 Domain From Human
Nucleoporin 50 Kda
Length = 125
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 71 TTGE-ENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRD 121
++GE + E + ++ KL+ D E+KE+G+G L LK K +LL+R D
Sbjct: 5 SSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLH-LKPTANQKTQLLVRAD 55
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 27 TTGE-ENETVLFEQRAKLYRFVDKEWKERGVGQLKL 61
++GE + E + ++ KL+ D E+KE+G+G L L
Sbjct: 5 SSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHL 40
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
pdb|2Y8G|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
Length = 138
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 70 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDIV 123
V TGEE E+ + + + KL+ F + W G G L+L + + D G + RL+MR
Sbjct: 7 VITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGS 66
Query: 124 HKICANHFLHQDMEL 138
++ N L M++
Sbjct: 67 LRLILNTKLWAQMQI 81
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 23 EVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
+V V TGEE E+ + + + KL+ F + W G G L+L
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRL 44
>pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
Length = 276
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 50 EWKERGVGQLKLLKNKDTGKVTTG-EENETVLFEQRAKLYRFVDKEW-----KERGVGQL 103
E+K +G+ +KL + + + + +E +LF ++ ++ RF +E RGV +
Sbjct: 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGI 160
Query: 104 KLLKNKDTGKVRL 116
KL KN +T +R+
Sbjct: 161 KLEKNDETSGLRI 173
>pdb|1A8Z|A Chain A, Structure Determination Of A 16.8kda Copper Protein
Rusticyanin At 2.1a Resolution Using Anomalous
Scattering Data With Direct Methods
Length = 153
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 1 LDTSWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 41
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84
+D WKE + Q+K + KDTGKV+ +TV + +
Sbjct: 1 LDTSWKEATLPQVKAMLQKDTGKVS----GDTVTYSGK 34
>pdb|1IS9|A Chain A, Endoglucanase A From Clostridium Thermocellum At Atomic
Resolution
pdb|1CEM|A Chain A, Endoglucanase A (Cela) Catalytic Core, Residues 33-395
Length = 363
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 32 NETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQRAKLYRFV 91
NE LF+ LYR+V + G+ + N + G+ T E A F
Sbjct: 76 NEQALFDD---LYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFA 132
Query: 92 DKEWKERGV 100
DK+W G
Sbjct: 133 DKQWGSSGA 141
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 42
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKV---TTGEENETVLFEQRAKLYRFVDKEWKERG 99
+D WKE + Q+K + KDTGKV T +TV A L F ++ G
Sbjct: 2 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHG 57
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84
+D WKE + Q+K + KDTGKV+ +TV + +
Sbjct: 3 LDTTWKEATLPQVKAMLQKDTGKVS----GDTVTYSGK 36
>pdb|3C75|H Chain H, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
pdb|3C75|J Chain J, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
Length = 426
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 29 GEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTG----KVTTGEENETVLFE 82
G +T Q ++Y VD+ EWK + + ++ N +TG K+ G E +++
Sbjct: 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVS 378
Query: 83 QRAK 86
Q A+
Sbjct: 379 QDAE 382
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 73 GEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTGK 113
G +T Q ++Y VD+ EWK + + ++ N +TG+
Sbjct: 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84
+D WKE + Q+K + KDTGKV+ +TV + +
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVS----GDTVTYSGK 36
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84
+D WKE + Q+K + KDTGKV+ +TV + +
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVS----GDTVTYSGK 36
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 42
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84
+D WKE + Q+K + KDTGKV+ +TV + +
Sbjct: 2 LDTTWKEATLPQVKAMLEKDTGKVS----GDTVTYSGK 35
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 91 VDKEWKERGVGQLKLLKNKDTGKVR---LLMRRDIVHKICA 128
+D WKE + Q+K + KDTGKV + VH + A
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAA 43
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84
+D WKE + Q+K + KDTGKV+ +TV + +
Sbjct: 3 LDTTWKEATLPQVKAMLEKDTGKVS----GDTVTYSGK 36
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 19 PLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVTT 72
P PD+ + TGE + F ++A D EW G+ + + +++TGKV
Sbjct: 238 PEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGI--DRNTGKVIV 289
>pdb|2ADF|H Chain H, Crystal Structure And Paratope Determination Of 82d6a3, An
Antithrombotic Antibody Directed Against The Von
Willebrand Factor A3-Domain
Length = 218
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 32 NETVLFEQRAKLYRFVD--KEWKERGVGQ-LKLL--KNKDTGKVTTGEENETVLFEQRAK 86
ETV +A Y F++ W ++ G+ LK + KN +TG+ T GEE F R
Sbjct: 15 GETVKISCKASGYTFINYGMNWVKQAPGKGLKWMGWKNTNTGETTYGEE-----FRGR-- 67
Query: 87 LYRFVDKEWKERGVGQLKLLKNKDT 111
+ F + Q+ LKN+DT
Sbjct: 68 -FAFSLETSVSTAYLQINNLKNEDT 91
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 1 DETTANDHDPLPDFKPIIPLPDEV--PVTTGEENETVLFEQRAKLYRFV---DKEWKERG 55
D T PL + + L + V +T EE ET RF+ KEWK+ G
Sbjct: 6 DHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYET----------RFLCNTSKEWKKAG 55
Query: 56 VGQLKLLKNKDTGKVTTGEENETVLF 81
V QL+L TG T ++ V F
Sbjct: 56 VEQLRLSTVDMTGVPTLANLHKGVQF 81
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 68 GKVTTGEENETVLFEQRAKLYRFV---DKEWKERGVGQLKLLKNKDTG 112
G +T EE ET RF+ KEWK+ GV QL+L TG
Sbjct: 31 GVITMNEEYET----------RFLCNTSKEWKKAGVEQLRLSTVDMTG 68
>pdb|3RGQ|A Chain A, Crystal Structure Of Ptpmt1 In Complex With Pi(5)p
Length = 156
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 68 GKVTTGEENETVLFEQRAKLYRFV---DKEWKERGVGQLKLLKNKDTG 112
G +T EE ET RF+ KEWK+ GV QL+L TG
Sbjct: 32 GVITMNEEYET----------RFLCNTSKEWKKAGVEQLRLSTVDMTG 69
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 1 DETTANDHDPLPDFKPIIPLPDEV--PVTTGEENETVLFEQRAKLYRFV---DKEWKERG 55
D T PL + + L + V +T EE ET RF+ KEWK+ G
Sbjct: 7 DHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYET----------RFLCNTSKEWKKAG 56
Query: 56 VGQLKLLKNKDTGKVTTGEENETVLF 81
V QL+L TG T ++ V F
Sbjct: 57 VEQLRLSTVDMTGVPTLANLHKGVQF 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,233,108
Number of Sequences: 62578
Number of extensions: 217271
Number of successful extensions: 566
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 60
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)