BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11674
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 108 bits (270), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 46/157 (29%)
Query: 5 ANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKN 64
++ D P F+P++PLPD++
Sbjct: 1157 GDEEDDGPHFEPVVPLPDKI---------------------------------------- 1176
Query: 65 KDTGKVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
+V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+RLLMRR+
Sbjct: 1177 ----EVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKILRHKTSGKIRLLMRREQ 1232
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEV 159
V KICANH++ DM+L P + ++++W A DYADE+
Sbjct: 1233 VLKICANHYISPDMKLTPNAGSDRSFVWHALDYADEL 1269
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ TGEE+E VL+ QR KL+RF + +WKERG+G LK+LKN+ GK+R+LMRR+ V K+
Sbjct: 1861 ELVTGEEDEKVLYSQRVKLFRFDAEISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKV 1920
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 1921 CANHWITTTMNLKPLSGSDRAWMWLASDFSD 1951
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RAKLYR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 2155 DLVEVSSGEENEQVVFSHRAKLYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 2213
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 2214 VLKLCANHRITPDMTLQTMKGTERVWVWTACDFAD 2248
Score = 94.0 bits (232), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
+V +GEE+E VLF++RAKLYR+ D+ +WKERG+G +K+L + R+LMRRD V K
Sbjct: 2751 EVKSGEEDEEVLFKERAKLYRW-DRDVSQWKERGIGDIKILWHTMKKYYRILMRRDQVFK 2809
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
+CANH + + MELKP+ + A +W A DYAD
Sbjct: 2810 VCANHVITKAMELKPLNVSNNALVWTASDYAD 2841
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 108 bits (269), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/96 (53%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIV 123
D +V TGEE+E F RAKL+RF KEWKERG+G +K+L++K +GK+RLLMRR+ V
Sbjct: 1180 DKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQV 1239
Query: 124 HKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEV 159
KICANH++ DM+L P + ++++W A DYADE+
Sbjct: 1240 LKICANHYISPDMKLTPNAGSDRSFVWHALDYADEL 1275
Score = 102 bits (255), Expect = 7e-22, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ TGEE+E VL+ QR KL+RF + +WKERG+G LK+LKN+ GK+R+LMRR+ V K+
Sbjct: 2024 ELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKV 2083
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 2084 CANHWITTTMNLKPLSGSDRAWMWLASDFSD 2114
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RAKLYR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 2318 DLVEVSSGEENEQVVFSHRAKLYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 2376
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 2377 VLKLCANHRITPDMTLQNMKGTERVWLWTACDFAD 2411
Score = 95.1 bits (235), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
+V +GEE+E +LF++RAKLYR+ D+ +WKERGVG +K+L + R+LMRRD V K
Sbjct: 2922 EVKSGEEDEEILFKERAKLYRW-DRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFK 2980
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
+CANH + + MELKP+ + A +W A DYAD
Sbjct: 2981 VCANHVITKTMELKPLNVSNNALVWTASDYAD 3012
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
GN=RGPD1 PE=2 SV=1
Length = 1748
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDKE---WKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
++ TGEE E VL+ Q KL+RF D E WKERG+G LK+LKN+ GK R+LMRRD V K
Sbjct: 1033 ELVTGEEGEKVLYSQGVKLFRF-DAEISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLK 1091
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
+CANH++ M LKP+ + +A++W A D++D
Sbjct: 1092 VCANHWITTTMNLKPLSGSDRAWMWLASDFSD 1123
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RA+LYR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 1327 DLVEVSSGEENEQVVFSHRAELYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 1385
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 1386 VLKLCANHRITPDMSLQNMKGTERVWVWTACDFAD 1420
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
GN=RGPD5 PE=1 SV=3
Length = 1765
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ TGEE E VL+ Q KL+RF ++WKERG+G LK+LKN+ GK+R+LMRR+ V K+
Sbjct: 1048 ELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLKILKNEVNGKLRMLMRREQVLKV 1107
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 1108 CANHWITTTMNLKPLSGSDRAWMWSASDFSD 1138
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RA++YR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 1342 DLVEVSSGEENEQVVFSHRAEIYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 1400
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 1401 VLKLCANHRITPDMSLQNMKGTERVWVWTACDFAD 1435
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
GN=RGPD8 PE=1 SV=2
Length = 1765
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ TGEE E VL+ Q KL+RF ++WKERG+G LK+LKN+ GK+R+LMRR+ V K+
Sbjct: 1048 ELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLKILKNEVNGKLRMLMRREQVLKV 1107
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 1108 CANHWITTTMNLKPLSGSDRAWMWSASDFSD 1138
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RA++YR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 1342 DLVEVSSGEENEQVVFSHRAEIYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 1400
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 1401 VLKLCANHRITPDMSLQNMKGTERVWVWTACDFAD 1435
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2
PE=2 SV=2
Length = 1085
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RAKLYR+ DK +WKERG+G +K+L+N + +VR++MRRD
Sbjct: 183 DLVEVSSGEENEQVVFSHRAKLYRY-DKDAGQWKERGIGDIKILQNYENKQVRIVMRRDQ 241
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 242 VLKLCANHRITPDMTLQNMKGTERVWVWTACDFAD 276
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDKE---WKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
+V +GEE+E +LF++RAKLYR+ D+E WK+RGVG +K+L + R+LMRRD V K
Sbjct: 783 EVKSGEEDEEILFKERAKLYRW-DREASQWKDRGVGDIKILWHTVKNYFRILMRRDQVFK 841
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
+CANH + + MELKP+ + A +W A DYAD
Sbjct: 842 VCANHVITKTMELKPLNVSNNALVWTASDYAD 873
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
GN=RGPD4 PE=2 SV=3
Length = 1758
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RA+LYR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 1343 DLVEVSSGEENEKVVFSHRAELYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 1401
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 1402 VLKLCANHTITPDMSLQNMKGTERVWVWTACDFAD 1436
Score = 94.0 bits (232), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ GEE E VL+ Q KL+RF ++WKERG+G LK+LKN+ GK R+LMRR+ V K+
Sbjct: 1049 ELVIGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLKILKNEVNGKPRMLMRREQVLKV 1108
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 1109 CANHWITTTMNLKPLSGSDRAWMWSASDFSD 1139
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
GN=RGPD2 PE=2 SV=1
Length = 1756
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ TGEE E VL+ Q KL+RF + +WKERG+G LK+LKN+ GK R+LMRRD V K+
Sbjct: 1041 ELVTGEEGEKVLYSQGVKLFRFDAEISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKV 1100
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 1101 CANHWITTTMNLKPLSGSDRAWMWLASDFSD 1131
Score = 95.9 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 69/95 (72%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F A+LYR+ DK +WKERG+G +K+L+N D +VR++MRRD
Sbjct: 1335 DLVEVSSGEENEQVVFSHMAELYRY-DKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQ 1393
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 1394 VLKLCANHRITPDMSLQNMKGTERVWVWTACDFAD 1428
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
GN=RGPD3 PE=2 SV=2
Length = 1758
Score = 97.8 bits (242), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 68/95 (71%), Gaps = 4/95 (4%)
Query: 66 DTGKVTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
D +V++GEENE V+F RA+ YR+ DK +WKERG+G +K+L+N D VR+LMRRD
Sbjct: 1343 DLVEVSSGEENEQVVFSHRAEFYRY-DKDVGQWKERGIGDIKILQNYDNKHVRILMRRDQ 1401
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
V K+CANH + DM L+ M T++ ++W A D+AD
Sbjct: 1402 VLKLCANHRITPDMSLQNMKGTERVWVWTACDFAD 1436
Score = 96.3 bits (238), Expect = 8e-20, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK--EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
++ TGEE E VL+ Q KL+RF + +WKERG+G LK+LKN+ GKVR+LM+R+ V K+
Sbjct: 1049 ELVTGEEGEKVLYSQGVKLFRFDAEVSQWKERGLGNLKILKNEVNGKVRMLMQREQVLKV 1108
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH++ M LKP+ + +A++W A D++D
Sbjct: 1109 CANHWITTTMNLKPLSGSDRAWMWSASDFSD 1139
>sp|P43487|RANG_HUMAN Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1
PE=1 SV=1
Length = 201
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDK----EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
+ T EE+E LF+ RAKL+RF + EWKERG G +KLLK+K+ G +RLLMRRD K
Sbjct: 38 IKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLK 97
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQ-DYADEV 159
ICANH++ MELKP + +A++W D+ADE
Sbjct: 98 ICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2
SV=1
Length = 206
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 5/96 (5%)
Query: 69 KVTTGEENETVLFEQRAKLYRFVDK----EWKERGVGQLKLLKNKDTGKVRLLMRRDIVH 124
++ T EE+E LF+ RAKL+RF + EWKERG G +KLLK+K+ G +RLLMRRD
Sbjct: 37 EIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTL 96
Query: 125 KICANHFLHQDMELKPMPNTKQAYIWFAQ-DYADEV 159
KICANH++ MELKP + +A++W D+ADE
Sbjct: 97 KICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
>sp|P34022|RANG_MOUSE Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1
PE=1 SV=2
Length = 203
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDK----EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHK 125
+ T EE+E LF+ RAKL+RF + EWKERG G +KLLK+K+ G +RLLMRRD K
Sbjct: 38 IKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLK 97
Query: 126 ICANHFLHQDMELKPMPNTKQAYIWFAQ-DYADEV 159
ICANH++ MELKP + +A++W D+ADE
Sbjct: 98 ICANHYITPMMELKPNAGSDRAWVWNTHADFADEC 132
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C
PE=2 SV=1
Length = 219
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDKE---WKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
VTTGEE+E + + ++K+YRF DKE WKERG G +KLLK+K+TGKVRL+MR+ KI
Sbjct: 38 VTTGEEDEDAVLDLKSKMYRF-DKEGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKI 96
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH + M ++ +++ +W A D++D
Sbjct: 97 CANHLISSGMSVQEHSGNEKSCLWHATDFSD 127
>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A
PE=1 SV=1
Length = 228
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 4/91 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
VTTGEE+E + + ++KLYRF DK +WKERG G +K LK+K+TGK+RL+MR+ KI
Sbjct: 39 VTTGEEDEDAVLDLKSKLYRF-DKDANQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKI 97
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANHF+ M ++ +++ +W A+D+AD
Sbjct: 98 CANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128
>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B
PE=1 SV=2
Length = 217
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 4/91 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDK---EWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKI 126
VTTGEE+E + + ++KLYRF DK +WKERG G +K LK++ +GK+RL+MR+ KI
Sbjct: 41 VTTGEEDEDTILDLKSKLYRF-DKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKI 99
Query: 127 CANHFLHQDMELKPMPNTKQAYIWFAQDYAD 157
CANH + M ++ ++ +W A+D++D
Sbjct: 100 CANHLVGSGMSVQEHAGNDKSCVWHARDFSD 130
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 70 VTTGEENETVLFEQRAKLYRF-VD-KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKIC 127
V T EE+E VL++ RAKL+RF D KEWKERG G K LKNK T KVR+LMRRD KIC
Sbjct: 76 VKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKIC 135
Query: 128 ANHFLHQDMELKPMPNTKQAYIW 150
ANH + + LKP + +++++
Sbjct: 136 ANHIIAPEYTLKPNVGSDRSWVY 158
>sp|Q54KD9|RANG_DICDI Ran-specific GTPase-activating protein homolog OS=Dictyostelium
discoideum GN=ranbp1 PE=1 SV=1
Length = 194
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 65 KDTGKVTTGEENETVLFEQRAKLYRF---VDKEWKERGVGQLKLLKNKDTGKVRLLMRRD 121
+D +V T EENE LFE RAKLYRF +WKERG G ++ L++KD+ ++R++MRRD
Sbjct: 55 RDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQWKERGTGNVRFLEDKDSKRIRVVMRRD 114
Query: 122 IVHKICANHFLHQDMELKPMPNTKQAYIW-FAQDYADE 158
K+C NH + + L M + ++++W +D++DE
Sbjct: 115 KTLKVCLNHHISPALSLGEMTGSDKSWVWKCPKDFSDE 152
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1
Length = 215
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 81 FEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMEL 138
F+ RAKL+RF EWKERG G +LLK+K+TGK RL+MRRD K+CANH L +M+L
Sbjct: 97 FKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKL 156
Query: 139 KPMPNTKQAYIW 150
P + ++++W
Sbjct: 157 TPNVGSDRSWVW 168
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 70 VTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLL--KNKDTGKVRLLMRRDIVHK 125
+ TGEE E +F RA+LY D K WKERG G LK+ K + +G RLLMR D VH+
Sbjct: 268 IITGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVHR 327
Query: 126 ICANHFLHQDMELKPM 141
+ N L Q M K +
Sbjct: 328 VIMNVPLFQGMSKKSL 343
>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup61 PE=1 SV=2
Length = 549
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 48 DKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 105
++E KE G + + + +GK GEENE +FE RAK+YRF K + + G+G LK+
Sbjct: 408 EQEEKENGNDETRSNDSLVSGK-GKGEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKI 466
Query: 106 LKNKDTGKVRLLMRRDIVHKICANHFLHQDME 137
++DTG R+L R + K+ N L QD E
Sbjct: 467 NVDRDTGSARILARVEGSGKLLLNVRLCQDFE 498
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 29 GEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTG 68
GEENE +FE RAK+YRF K + + G+G LK+ ++DTG
Sbjct: 432 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRDTG 473
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP2 PE=1 SV=2
Length = 720
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHKI 126
+ GEE+E LF Q+AKL F K + RGVG++KLLK K D KVRLL R D + +
Sbjct: 599 LQNGEEDEVALFSQKAKLMTFNAETKSYDSRGVGEMKLLKKKDDPSKVRLLCRSDGMGNV 658
Query: 127 CANHFLHQDMELKPM 141
N + + +P+
Sbjct: 659 LLNATVVDSFKYEPL 673
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 2 ETTANDHDPLPDFKPIIPLPDE---VPVTTGEENETVLFEQRAKLYRF--VDKEWKERGV 56
E T N+ D + P+E + + GEE+E LF Q+AKL F K + RGV
Sbjct: 575 EATGNESQ---DATKVDATPEESKPINLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGV 631
Query: 57 GQLKLLKNKD 66
G++KLLK KD
Sbjct: 632 GEMKLLKKKD 641
>sp|P40517|YRB2_YEAST Ran-specific GTPase-activating protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB2 PE=1
SV=1
Length = 327
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 70 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNK-DTGKVRLLMRRDIVHKI 126
V +GEE+E +++ AKLY+ + + WKERGVG +K+ K+K D K R++MR + K+
Sbjct: 205 VKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIKINKSKDDVEKTRIVMRSRGILKV 264
Query: 127 CAN 129
N
Sbjct: 265 ILN 267
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 26 VTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKD 66
V +GEE+E +++ AKLY+ + + WKERGVG +K+ K+KD
Sbjct: 205 VKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIKINKSKD 247
>sp|Q8SSI6|YRB1_ENCCU Ran-specific GTPase-activating protein 1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=YRB1 PE=1 SV=1
Length = 219
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 74 EENET--VLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 129
EEN++ +LF+ R KLY F + K +ER G + + + + ++ M RD + ++ N
Sbjct: 85 EENQSDEILFKARCKLYYFSEETKALEERAEGTMIIEMHSKSNLAKITMFRDQIGRLGCN 144
Query: 130 HFLHQDMELKPMPNTKQAYIWFA 152
HF++ + +P ++W +
Sbjct: 145 HFINPRFKAQPHGKVSNGWMWMS 167
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1
Length = 494
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 69 KVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDI 122
+V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 317 EVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQG 376
Query: 123 VHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVV 160
++ N L M++ ++++ A D D+VV
Sbjct: 377 SLRLILNTKLWAQMQIDKA--SEKSIRITAMDTEDQVV 412
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L
Sbjct: 312 LLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRL 355
>sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50 OS=Mus musculus GN=Nup50 PE=1
SV=3
Length = 466
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDI-VHKICA 128
V T + E + ++ KL+ D E+KE+GVG L LK T K +LL+R D + I
Sbjct: 346 VVTEVKEEDAFYSKKCKLFYKKDNEFKEKGVGTLH-LKPTATQKTQLLVRADTNLGNILL 404
Query: 129 NHFLHQDM 136
N + +M
Sbjct: 405 NVLIAPNM 412
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 DEVP--VTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKL 61
DE P V T + E + ++ KL+ D E+KE+GVG L L
Sbjct: 340 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGVGTLHL 381
>sp|O08587|NUP50_RAT Nuclear pore complex protein Nup50 OS=Rattus norvegicus GN=Nup50
PE=2 SV=2
Length = 467
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDI 122
V T + E + ++ KL+ D E+KE+GVG L LK T K +LL+R D
Sbjct: 347 VVTEVKEEDAFYSKKCKLFYKKDNEFKEKGVGTLH-LKPTATQKTQLLVRADT 398
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 DEVP--VTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKL 61
DE P V T + E + ++ KL+ D E+KE+GVG L L
Sbjct: 341 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGVGTLHL 382
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 69 KVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDI 122
+V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 322 EVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQG 381
Query: 123 VHKICANHFLHQDMEL 138
++ N L M++
Sbjct: 382 SLRLILNTKLWAQMQI 397
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L
Sbjct: 317 LLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRL 360
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 69 KVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDI 122
+V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 390 EVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQG 449
Query: 123 VHKICANHFLHQDMEL 138
++ N L M++
Sbjct: 450 SLRLILNTKLWAQMQI 465
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L
Sbjct: 385 LLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRL 428
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 69 KVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL--LKNKDTGKV--RLLMRRDI 122
+V TGEE E+ + + + KL+ F + W ERG G L+L + + D G + RL+MR
Sbjct: 314 EVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQG 373
Query: 123 VHKICANHFLHQDMEL 138
++ N L M++
Sbjct: 374 SLRLILNTKLWAQMQM 389
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 20 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKL 61
L ++V V TGEE E+ + + + KL+ F + W ERG G L+L
Sbjct: 309 LLEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRL 352
>sp|Q9UKX7|NUP50_HUMAN Nuclear pore complex protein Nup50 OS=Homo sapiens GN=NUP50 PE=1
SV=2
Length = 468
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 70 VTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRD 121
V T + E + ++ KL+ D E+KE+G+G L LK K +LL+R D
Sbjct: 348 VVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLH-LKPTANQKTQLLVRAD 398
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 22 DEVP--VTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKL 61
DE P V T + E + ++ KL+ D E+KE+G+G L L
Sbjct: 342 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHL 383
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2
Length = 465
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 20 LPDEVPVTTGEENETVLFEQRAKLYRF--VDKEWKERGVGQLKLLKNKDTGKVTTGEENE 77
L +++ V TGEE E + + KL+ F + W ERG G L+L DT G
Sbjct: 283 LLEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIERGRGTLRL---NDTASTDCGTLQS 339
Query: 78 TVLFEQRAKLYRFVD-KEWKE 97
++ + L ++ K W +
Sbjct: 340 RLIMRNQGSLRLILNSKLWAQ 360
>sp|O67108|GYRA_AQUAE DNA gyrase subunit A OS=Aquifex aeolicus (strain VF5) GN=gyrA PE=1
SV=1
Length = 744
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 50 EWKERGVGQLKLLKNKDTGKVTTG-EENETVLFEQRAKLYRFVDKEW-----KERGVGQL 103
E+K +G+ +KL + + + + +E +LF ++ ++ RF +E RGV +
Sbjct: 594 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGI 653
Query: 104 KLLKNKDTGKVRL 116
KL KN +T +R+
Sbjct: 654 KLEKNDETSGLRI 666
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,510,250
Number of Sequences: 539616
Number of extensions: 2761329
Number of successful extensions: 6992
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6834
Number of HSP's gapped (non-prelim): 101
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)