Query psy11674
Match_columns 161
No_of_seqs 220 out of 652
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 15:58:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00160 RanBD Ran-binding d 100.0 5.4E-36 1.2E-40 226.8 11.5 104 14-160 1-105 (130)
2 COG5171 YRB1 Ran GTPase-activa 100.0 2.9E-37 6.2E-42 242.2 3.3 114 5-161 62-176 (211)
3 cd00835 RanBD Ran-binding doma 100.0 1.4E-32 3E-37 205.3 11.5 92 68-159 1-94 (122)
4 PF00638 Ran_BP1: RanBP1 domai 100.0 1.6E-31 3.5E-36 198.5 11.6 91 70-160 2-94 (122)
5 KOG0864|consensus 99.9 1.4E-22 3.1E-27 165.0 1.9 112 7-161 31-145 (215)
6 cd00835 RanBD Ran-binding doma 99.5 6.4E-15 1.4E-19 109.9 5.4 48 24-71 1-50 (122)
7 KOG2724|consensus 98.9 6.8E-10 1.5E-14 97.8 2.3 75 76-151 379-454 (487)
8 KOG0866|consensus 98.9 4.6E-10 1E-14 95.8 0.3 91 65-157 144-240 (327)
9 cd00837 EVH1 EVH1 (Enabled, Va 98.8 7.7E-08 1.7E-12 70.1 9.4 74 77-152 1-78 (104)
10 KOG0866|consensus 98.5 3.4E-08 7.3E-13 84.5 0.5 108 22-129 145-296 (327)
11 smart00160 RanBD Ran-binding d 98.0 8.6E-06 1.9E-10 61.6 5.4 55 66-129 8-64 (130)
12 PF00638 Ran_BP1: RanBP1 domai 97.9 1.2E-05 2.6E-10 59.4 4.1 19 101-120 46-64 (122)
13 cd01207 Ena-Vasp Enabled-VASP- 97.8 0.00015 3.3E-09 53.8 8.2 74 77-152 1-81 (111)
14 cd01206 Homer Homer type EVH1 97.7 0.00016 3.4E-09 53.5 6.9 71 77-151 3-78 (111)
15 PF00568 WH1: WH1 domain; Int 97.7 0.00046 9.9E-09 50.6 9.1 73 78-152 9-85 (111)
16 COG5171 YRB1 Ran GTPase-activa 97.0 0.00014 3E-09 58.1 -0.3 50 65-123 77-126 (211)
17 smart00461 WH1 WASP homology r 94.5 0.6 1.3E-05 33.9 9.3 73 77-152 3-80 (106)
18 cd00837 EVH1 EVH1 (Enabled, Va 88.0 0.66 1.4E-05 33.5 3.3 34 33-66 1-38 (104)
19 KOG2724|consensus 87.9 0.38 8.3E-06 43.3 2.4 31 33-63 380-410 (487)
20 PF06058 DCP1: Dcp1-like decap 78.0 6.7 0.00015 29.3 5.3 58 82-141 26-87 (122)
21 KOG0864|consensus 77.5 1.6 3.4E-05 35.7 1.9 32 51-90 77-109 (215)
22 KOG4590|consensus 59.0 13 0.00028 33.5 3.9 44 98-141 18-62 (409)
23 cd01206 Homer Homer type EVH1 37.5 33 0.00073 25.5 2.5 30 32-61 2-34 (111)
24 PF07933 DUF1681: Protein of u 35.1 76 0.0016 25.0 4.3 55 100-154 39-93 (160)
25 PF09200 Monellin: Monellin; 31.1 25 0.00054 21.6 0.8 24 84-107 15-39 (43)
26 PF08553 VID27: VID27 cytoplas 27.0 3.3E+02 0.0072 26.8 8.0 74 75-152 245-321 (794)
27 PF00568 WH1: WH1 domain; Int 24.3 1.1E+02 0.0024 21.9 3.4 34 33-66 8-45 (111)
No 1
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=5.4e-36 Score=226.75 Aligned_cols=104 Identities=58% Similarity=1.061 Sum_probs=97.7
Q ss_pred ccccccCCCccccccccccceeeeeeeceeeeeeccceeeecccceeeecccCCCccccCCCcceeeEEeeeeEeeeecc
Q psy11674 14 FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQRAKLYRFVDK 93 (161)
Q Consensus 14 f~pv~~l~~~v~v~tgEE~E~~~f~~r~kl~~~~~~~wkerGvg~~kl~~~~~t~~i~tGEE~E~~lf~~raKL~~~~~~ 93 (161)
|+|+++|| .|+++||||+|+++|+.|||||+|++. ++
T Consensus 1 ~~~~~~l~-~ve~~tgEE~E~~lf~~r~KL~~~~~~------------------------------------------~~ 37 (130)
T smart00160 1 FKPVVPLP-DVEVKTGEEDEEVIFSARAKLYRFAND------------------------------------------KK 37 (130)
T ss_pred CCCcccCc-cccccCCCcCeEEEEEEEeEEEEEcCC------------------------------------------CC
Confidence 89999999 599999999999999999999999853 36
Q ss_pred ceeeeccceeeeeecCCC-CcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEEeeecCCCCC
Q psy11674 94 EWKERGVGQLKLLKNKDT-GKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQDYADEVV 160 (161)
Q Consensus 94 ~WkerGvG~lkil~~~~t-~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~a~D~sd~~~ 160 (161)
+|++||+|.||||+++++ +++|||||++++++|+|||+|+++|+++++.++.++|+|++.|++|+++
T Consensus 38 ~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~~ 105 (130)
T smart00160 38 EWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIP 105 (130)
T ss_pred CCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCCC
Confidence 899999999999999999 8999999999999999999999999999999999999999999999864
No 2
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.9e-37 Score=242.19 Aligned_cols=114 Identities=41% Similarity=0.802 Sum_probs=107.3
Q ss_pred CCCCCCCCCccccccCCCccccccccccceeeeeeeceeeeeeccceeeecccceeeecccCCCccccCCCcceeeEEee
Q psy11674 5 ANDHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQR 84 (161)
Q Consensus 5 ~~~~~~~~~f~pv~~l~~~v~v~tgEE~E~~~f~~r~kl~~~~~~~wkerGvg~~kl~~~~~t~~i~tGEE~E~~lf~~r 84 (161)
+...+|++||+|||.|. .|+++|.||||.++|+.|||||||+..
T Consensus 62 ~~pesp~ihfepvV~l~-~v~~ktneedE~vlfK~RaKLfrFd~~----------------------------------- 105 (211)
T COG5171 62 KGPESPNIHFEPVVELQ-RVHLKTNEEDETVLFKARAKLFRFDEE----------------------------------- 105 (211)
T ss_pred CCCCCCCcchHHHHHHH-hhhhhccccchhhhhhhhhhheeehHH-----------------------------------
Confidence 36788999999999995 899999999999999999999999863
Q ss_pred eeEeeeeccceeeeccceeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEEe-eecCCCCCC
Q psy11674 85 AKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA-QDYADEVVS 161 (161)
Q Consensus 85 aKL~~~~~~~WkerGvG~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~a-~D~sd~~~~ 161 (161)
.++|+|||.|+++|++|+.++++||+||||+++|||+||.|.|.|+++|+.+++++|+|++ .|.++|+|+
T Consensus 106 -------akewkERgtGd~~~lkhkktnk~ri~MrRDktlklcaNH~i~Pe~kl~PnvgsdrsWvw~~taD~~Egea~ 176 (211)
T COG5171 106 -------AKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFKLQPNVGSDRSWVWMSTADTVEGEAK 176 (211)
T ss_pred -------HHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhhhhccCcceeccCCCCcccceEEEeecccccCcce
Confidence 4688899999999999999999999999999999999999999999999999999999996 999999974
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=1.4e-32 Score=205.28 Aligned_cols=92 Identities=61% Similarity=1.001 Sum_probs=87.9
Q ss_pred CccccCCCcceeeEEeeeeEeeeec--cceeeeccceeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCC
Q psy11674 68 GKVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTK 145 (161)
Q Consensus 68 ~~i~tGEE~E~~lf~~raKL~~~~~--~~WkerGvG~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~ 145 (161)
+++.||||+|+++|+.|||||+|++ ++|+|||+|+|||+++++++++|||||+|++++|+|||+|+|+|+++++.+++
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~ 80 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD 80 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence 3688999999999999999999987 89999999999999999999999999999999999999999999999998889
Q ss_pred cEEEEEeeecCCCC
Q psy11674 146 QAYIWFAQDYADEV 159 (161)
Q Consensus 146 ~a~~w~a~D~sd~~ 159 (161)
++|+|++.|++|++
T Consensus 81 k~~~~~~~d~~~~~ 94 (122)
T cd00835 81 KSIVWAAMDFSDDE 94 (122)
T ss_pred cEEEEEeeecCCCC
Confidence 99999999999863
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=99.97 E-value=1.6e-31 Score=198.54 Aligned_cols=91 Identities=60% Similarity=0.959 Sum_probs=73.6
Q ss_pred cccCCCcceeeEEeeeeEeeee--ccceeeeccceeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcE
Q psy11674 70 VTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQA 147 (161)
Q Consensus 70 i~tGEE~E~~lf~~raKL~~~~--~~~WkerGvG~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a 147 (161)
|.||||+|+++|+.|||||+|+ +++|++||+|.|||+++++++++|||||++++++|+|||+|+++|+++++.++.++
T Consensus 2 v~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~ 81 (122)
T PF00638_consen 2 VKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKS 81 (122)
T ss_dssp CCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTE
T ss_pred CcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCcE
Confidence 3445555555555555555554 36899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCC
Q psy11674 148 YIWFAQDYADEVV 160 (161)
Q Consensus 148 ~~w~a~D~sd~~~ 160 (161)
|+|++.|++|+++
T Consensus 82 ~~~~~~~~~~~~~ 94 (122)
T PF00638_consen 82 LVWTAIDYADEEG 94 (122)
T ss_dssp EEEEEEECTTSSS
T ss_pred EEEEeccccCCCC
Confidence 9999999998763
No 5
>KOG0864|consensus
Probab=99.85 E-value=1.4e-22 Score=165.05 Aligned_cols=112 Identities=43% Similarity=0.765 Sum_probs=104.0
Q ss_pred CCCCCCCccccccCCCccccccccccceeeeeeec-eeeeeeccceeeecccceeeecccCCCccccCCCcceeeEEeee
Q psy11674 7 DHDPLPDFKPIIPLPDEVPVTTGEENETVLFEQRA-KLYRFVDKEWKERGVGQLKLLKNKDTGKVTTGEENETVLFEQRA 85 (161)
Q Consensus 7 ~~~~~~~f~pv~~l~~~v~v~tgEE~E~~~f~~r~-kl~~~~~~~wkerGvg~~kl~~~~~t~~i~tGEE~E~~lf~~ra 85 (161)
...|..+|+|+++++. +.++|++++|..+|..|+ +||+|+..
T Consensus 31 ~~~~~~~~~~~~~~~~-~~v~t~e~~e~~~~~~~s~~l~~f~~~------------------------------------ 73 (215)
T KOG0864|consen 31 EESPAKQVEPQEELEK-VEVKTGEEDEEIIFDQRSEKLYVFDNE------------------------------------ 73 (215)
T ss_pred ccCccccccccccccc-hhhhccchhhhhhhhhhhhhHHhhhhh------------------------------------
Confidence 5788999999999986 999999999999999997 99999763
Q ss_pred eEeeeeccceeeeccceeeeeecCCCCcEEEEEEeCCe-eeEEEcccccCCcEEeecCCCCcEEEEE-eeecCCCCCC
Q psy11674 86 KLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIV-HKICANHFLHQDMELKPMPNTKQAYIWF-AQDYADEVVS 161 (161)
Q Consensus 86 KL~~~~~~~WkerGvG~lkil~~~~t~~~RilmR~d~~-~kv~lN~~I~~~m~~~~~~~~~~a~~w~-a~D~sd~~~~ 161 (161)
.++|++||.|.+++++|++++..|++||+|++ +++|+||+|++.|+++|+...+++|+|. +.||++++|.
T Consensus 74 ------~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~ 145 (215)
T KOG0864|consen 74 ------TKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVCSNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPK 145 (215)
T ss_pred ------hhhhhccCCcceEeeecCCCCcceeeeeecccchhhcccccccCcccccCCcccCcchhhhhhhhhcccccc
Confidence 46888999999999999999999999999999 8999999999999999999999999994 6999999874
No 6
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=99.55 E-value=6.4e-15 Score=109.89 Aligned_cols=48 Identities=73% Similarity=1.138 Sum_probs=43.2
Q ss_pred cccccccccceeeeeeeceeeeeec--cceeeecccceeeecccCCCccc
Q psy11674 24 VPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVT 71 (161)
Q Consensus 24 v~v~tgEE~E~~~f~~r~kl~~~~~--~~wkerGvg~~kl~~~~~t~~i~ 71 (161)
|+|+||||+|+++|+.|||||+|++ ++|+|||+|.+||+++++++..+
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~R 50 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYR 50 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEE
Confidence 6899999999999999999999998 89999999999999988644433
No 7
>KOG2724|consensus
Probab=98.88 E-value=6.8e-10 Score=97.77 Aligned_cols=75 Identities=27% Similarity=0.508 Sum_probs=66.4
Q ss_pred cceeeEEeeeeEeeeeccceeeeccceeeeeecCCCCcEEEEEEeCC-eeeEEEcccccCCcEEeecCCCCcEEEEE
Q psy11674 76 NETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDI-VHKICANHFLHQDMELKPMPNTKQAYIWF 151 (161)
Q Consensus 76 ~E~~lf~~raKL~~~~~~~WkerGvG~lkil~~~~t~~~RilmR~d~-~~kv~lN~~I~~~m~~~~~~~~~~a~~w~ 151 (161)
+++.+|+.|||+|++.++++.++|+|+|+|..+.. ++..||.|.|. +++|+||..|.++|+++++.+++-.++-+
T Consensus 379 edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnvlIvcv 454 (487)
T KOG2724|consen 379 EDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNVLIVCV 454 (487)
T ss_pred CccchhccccceEEEecccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCCceEEEEe
Confidence 57889999999999999999999999999987765 99999999875 78999999999999999987765555444
No 8
>KOG0866|consensus
Probab=98.86 E-value=4.6e-10 Score=95.83 Aligned_cols=91 Identities=25% Similarity=0.377 Sum_probs=78.9
Q ss_pred cCCCccccCCCcceeeEEeeeeEeeeec--cceeeeccceeeeeecCCCC----cEEEEEEeCCeeeEEEcccccCCcEE
Q psy11674 65 KDTGKVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTG----KVRLLMRRDIVHKICANHFLHQDMEL 138 (161)
Q Consensus 65 ~~t~~i~tGEE~E~~lf~~raKL~~~~~--~~WkerGvG~lkil~~~~t~----~~RilmR~d~~~kv~lN~~I~~~m~~ 138 (161)
...+++.+|||+|.++|...||||.|+. ..|.++|.|++|++....++ ..||+||..++++|++|..|+..|..
T Consensus 144 ~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~ 223 (327)
T KOG0866|consen 144 LSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQI 223 (327)
T ss_pred ceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHH
Confidence 3457889999999999999999999985 58999999999999876654 48999999999999999999999998
Q ss_pred eecCCCCcEEEEEeeecCC
Q psy11674 139 KPMPNTKQAYIWFAQDYAD 157 (161)
Q Consensus 139 ~~~~~~~~a~~w~a~D~sd 157 (161)
+.. +++.+.-++||-+.
T Consensus 224 ek~--sq~~ir~~a~~~e~ 240 (327)
T KOG0866|consen 224 EKA--SQKSIRITAMDTEG 240 (327)
T ss_pred hhh--cccceeeccccccC
Confidence 865 66678888887654
No 9
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.77 E-value=7.7e-08 Score=70.09 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=66.2
Q ss_pred ceeeEEeeeeEeeeec--cceeee--ccceeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEEe
Q psy11674 77 ETVLFEQRAKLYRFVD--KEWKER--GVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA 152 (161)
Q Consensus 77 E~~lf~~raKL~~~~~--~~Wker--GvG~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~a 152 (161)
+.+++..+|.||..++ ++|..+ |+|.+.+.++...+.+||+|++-+..++++|+.|.++|.+... ++....|-.
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~--~~~Fh~w~~ 78 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQA--TPFFHQWED 78 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeec--CCeEEEEEc
Confidence 3578999999999976 899999 9999999999988899999999888999999999999998764 677888875
No 10
>KOG0866|consensus
Probab=98.47 E-value=3.4e-08 Score=84.54 Aligned_cols=108 Identities=24% Similarity=0.313 Sum_probs=91.1
Q ss_pred Cccccccccccceeeeeeeceeeeeec--cceeeecccceeeecccCCCc------------------------------
Q psy11674 22 DEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGK------------------------------ 69 (161)
Q Consensus 22 ~~v~v~tgEE~E~~~f~~r~kl~~~~~--~~wkerGvg~~kl~~~~~t~~------------------------------ 69 (161)
+.|++.||||+|-++|++-||||.|+. ..|+|||++.++++....++-
T Consensus 145 ~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~e 224 (327)
T KOG0866|consen 145 SAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQIE 224 (327)
T ss_pred eeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHHh
Confidence 479999999999999999999999998 479999999999975432221
Q ss_pred ------cc---cCCCc-ceeeEEeeeeEeeee--ccceeeeccceeeeeecCCCCcEEEEEEeCCeeeEEEc
Q psy11674 70 ------VT---TGEEN-ETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICAN 129 (161)
Q Consensus 70 ------i~---tGEE~-E~~lf~~raKL~~~~--~~~WkerGvG~lkil~~~~t~~~RilmR~d~~~kv~lN 129 (161)
++ -+-|+ +.-+|..+++.++++ .+.+..||++.+++...++.+++|++.+-++.+.++.|
T Consensus 225 k~sq~~ir~~a~~~e~~~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 225 KASQKSIRITAMDTEGQGVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERECLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred hhcccceeeccccccCCcceEEEeeccccchhhhhhhhhhhhhhhhhcccchhhhhcccCCCcccccccccc
Confidence 10 22233 888999999999997 47889999999999988888899999999999998888
No 11
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=98.05 E-value=8.6e-06 Score=61.59 Aligned_cols=55 Identities=38% Similarity=0.591 Sum_probs=41.5
Q ss_pred CCCccccCCCcceeeEEeeeeEeeeeccceeeeccceeeeeecCCCCcEEEEEEeC--CeeeEEEc
Q psy11674 66 DTGKVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRD--IVHKICAN 129 (161)
Q Consensus 66 ~t~~i~tGEE~E~~lf~~raKL~~~~~~~WkerGvG~lkil~~~~t~~~RilmR~d--~~~kv~lN 129 (161)
+.+++.||||+|+++|++|||||+| ++ .. +=++.+..|..||+-+.+ +..||++-
T Consensus 8 ~~ve~~tgEE~E~~lf~~r~KL~~~-~~-----~~---~~WkerG~G~lki~~~~~~~~~~RivmR 64 (130)
T smart00160 8 PDVEVKTGEEDEEVIFSARAKLYRF-AN-----DK---KEWKERGVGDLKILKSKDNGGKVRIVMR 64 (130)
T ss_pred ccccccCCCcCeEEEEEEEeEEEEE-cC-----CC---CCCeeccEEEEEEEEcCCCCCeEEEEEE
Confidence 3488999999999999999999999 31 11 234455677899988875 36777754
No 12
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=97.93 E-value=1.2e-05 Score=59.42 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=11.2
Q ss_pred ceeeeeecCCCCcEEEEEEe
Q psy11674 101 GQLKLLKNKDTGKVRLLMRR 120 (161)
Q Consensus 101 G~lkil~~~~t~~~RilmR~ 120 (161)
|..||+...+ +..||++..
T Consensus 46 ~~~RlvmR~d-~~~kv~lN~ 64 (122)
T PF00638_consen 46 GKYRLVMRRD-GTGKVLLNH 64 (122)
T ss_dssp CEEEEEEEET-TTTEEEEEE
T ss_pred cceEEEEEEc-ccCceeEEE
Confidence 5677775543 455676653
No 13
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.80 E-value=0.00015 Score=53.78 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=61.6
Q ss_pred ceeeEEeeeeEeeeec--cceeeeccc-----eeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEE
Q psy11674 77 ETVLFEQRAKLYRFVD--KEWKERGVG-----QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYI 149 (161)
Q Consensus 77 E~~lf~~raKL~~~~~--~~WkerGvG-----~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~ 149 (161)
|..+|.+||..|.+++ +.|..-|-| .+.|.++...+.+||+-|+-.-.++++|..|.++|++.. .++..-.
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k--~~p~Fh~ 78 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQ--ATPTFHQ 78 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeee--cCCccee
Confidence 4578999999999984 679876664 788888888889999999877789999999999999986 3566667
Q ss_pred EEe
Q psy11674 150 WFA 152 (161)
Q Consensus 150 w~a 152 (161)
|..
T Consensus 79 w~~ 81 (111)
T cd01207 79 WRD 81 (111)
T ss_pred eec
Confidence 764
No 14
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=97.70 E-value=0.00016 Score=53.53 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=56.3
Q ss_pred ceeeEEeeeeEeeeec---cceeeeccce--eeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEE
Q psy11674 77 ETVLFEQRAKLYRFVD---KEWKERGVGQ--LKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF 151 (161)
Q Consensus 77 E~~lf~~raKL~~~~~---~~WkerGvG~--lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~ 151 (161)
|..||..||..|.+++ +.|..-|-+. +.+..+.....+|||-+.+ .++++|..|.++|++... +++.=.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~ka--s~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKT--SQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeec--cccccccc
Confidence 6779999999999986 4898777764 4455677778999999865 599999999999999875 44444453
No 15
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=97.68 E-value=0.00046 Score=50.57 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=62.3
Q ss_pred eeeEEeeeeEeeeec--c-ceee-eccceeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEEe
Q psy11674 78 TVLFEQRAKLYRFVD--K-EWKE-RGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFA 152 (161)
Q Consensus 78 ~~lf~~raKL~~~~~--~-~Wke-rGvG~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~a 152 (161)
.++..++|.||..++ + +|.- .+.|.+-+.++.....+||.++.=+..++++|+.|.++|.++.. ++.--.|..
T Consensus 9 ~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~--~~~Fh~f~~ 85 (111)
T PF00568_consen 9 QSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKA--RPFFHQFED 85 (111)
T ss_dssp EEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEE--SSSEEEEEE
T ss_pred eEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeC--CCcEEEEEe
Confidence 678999999999963 4 4999 99999999999888889999998668999999999999999975 566777764
No 16
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.00014 Score=58.09 Aligned_cols=50 Identities=40% Similarity=0.607 Sum_probs=40.5
Q ss_pred cCCCccccCCCcceeeEEeeeeEeeeeccceeeeccceeeeeecCCCCcEEEEEEeCCe
Q psy11674 65 KDTGKVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIV 123 (161)
Q Consensus 65 ~~t~~i~tGEE~E~~lf~~raKL~~~~~~~WkerGvG~lkil~~~~t~~~RilmR~d~~ 123 (161)
.+.+.+.+-||||.++|.+|||||+| +. ..+-++.+.+|.+||||.....
T Consensus 77 l~~v~~ktneedE~vlfK~RaKLfrF-d~--------~akewkERgtGd~~~lkhkktn 126 (211)
T COG5171 77 LQRVHLKTNEEDETVLFKARAKLFRF-DE--------EAKEWKERGTGDMIILKHKKTN 126 (211)
T ss_pred HHhhhhhccccchhhhhhhhhhheee-hH--------HHHHHHhcCCCcEEEEeccccC
Confidence 34467789999999999999999999 33 3455667889999999997643
No 17
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=94.49 E-value=0.6 Score=33.89 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=53.5
Q ss_pred ceeeEEeeeeEeeee--ccceeeeccc-eeeeeecC--CCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEE
Q psy11674 77 ETVLFEQRAKLYRFV--DKEWKERGVG-QLKLLKNK--DTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF 151 (161)
Q Consensus 77 E~~lf~~raKL~~~~--~~~WkerGvG-~lkil~~~--~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~ 151 (161)
+.++...+|-.+.+. ++.|.-.|.| -+.+.+.. .+.-+||+=+..+. ++++|+.|.++|++... .+..-.|-
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~--~~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQA--TPTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeec--CCceEEEE
Confidence 345666777666665 4789999999 77777543 34467998887544 99999999999999864 45566676
Q ss_pred e
Q psy11674 152 A 152 (161)
Q Consensus 152 a 152 (161)
.
T Consensus 80 ~ 80 (106)
T smart00461 80 D 80 (106)
T ss_pred e
Confidence 3
No 18
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=87.96 E-value=0.66 Score=33.46 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=29.5
Q ss_pred ceeeeeeeceeeeeec--cceeee--cccceeeecccC
Q psy11674 33 ETVLFEQRAKLYRFVD--KEWKER--GVGQLKLLKNKD 66 (161)
Q Consensus 33 E~~~f~~r~kl~~~~~--~~wker--Gvg~~kl~~~~~ 66 (161)
+.+++..+|.||.+++ ++|..+ |.|.+.+.++..
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~ 38 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDST 38 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECC
Confidence 4578999999999987 899999 899999987753
No 19
>KOG2724|consensus
Probab=87.92 E-value=0.38 Score=43.33 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=27.5
Q ss_pred ceeeeeeeceeeeeeccceeeecccceeeec
Q psy11674 33 ETVLFEQRAKLYRFVDKEWKERGVGQLKLLK 63 (161)
Q Consensus 33 E~~~f~~r~kl~~~~~~~wkerGvg~~kl~~ 63 (161)
++.+++.+||+|.+-+++.+++|||.++|-.
T Consensus 380 dda~ysKkckvfykKdKEf~dkGvgtl~lkp 410 (487)
T KOG2724|consen 380 DDAVYSKKCKVFYKKDKEFTDKGVGTLHLKP 410 (487)
T ss_pred ccchhccccceEEEecccccccccceeeccc
Confidence 4577999999999999999999999998743
No 20
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=78.01 E-value=6.7 Score=29.28 Aligned_cols=58 Identities=17% Similarity=0.452 Sum_probs=38.6
Q ss_pred EeeeeEeeee--ccceeeecc-ceeeeeecCCCCcEEE-EEEeCCeeeEEEcccccCCcEEeec
Q psy11674 82 EQRAKLYRFV--DKEWKERGV-GQLKLLKNKDTGKVRL-LMRRDIVHKICANHFLHQDMELKPM 141 (161)
Q Consensus 82 ~~raKL~~~~--~~~WkerGv-G~lkil~~~~t~~~Ri-lmR~d~~~kv~lN~~I~~~m~~~~~ 141 (161)
..-|-||.|+ .++|.-.|+ |.|.|.+......++| ||-|.+...++.. |++++.++..
T Consensus 26 a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~ 87 (122)
T PF06058_consen 26 ASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQ 87 (122)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEE
T ss_pred CCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEe
Confidence 3478899997 589987665 8888886555666654 7777776666654 7777777753
No 21
>KOG0864|consensus
Probab=77.46 E-value=1.6 Score=35.74 Aligned_cols=32 Identities=50% Similarity=0.841 Sum_probs=25.7
Q ss_pred eeeecccceeeecccCCCccccCCCcceeeEEeeeeE-eee
Q psy11674 51 WKERGVGQLKLLKNKDTGKVTTGEENETVLFEQRAKL-YRF 90 (161)
Q Consensus 51 wkerGvg~~kl~~~~~t~~i~tGEE~E~~lf~~raKL-~~~ 90 (161)
|+|||.|.+++++++.++.++ ++++|.+. .++
T Consensus 77 ~kerG~g~~~~~kn~~~g~~r--------~~m~rdst~~~v 109 (215)
T KOG0864|consen 77 WKERGTGKVKLLKNKDTGSTR--------DLMRRDSTKLKV 109 (215)
T ss_pred hhccCCcceEeeecCCCCcce--------eeeeecccchhh
Confidence 999999999999999888766 56666666 444
No 22
>KOG4590|consensus
Probab=59.02 E-value=13 Score=33.46 Aligned_cols=44 Identities=7% Similarity=0.273 Sum_probs=35.2
Q ss_pred eccceeeeeecCCCCcEEEEEEeCCe-eeEEEcccccCCcEEeec
Q psy11674 98 RGVGQLKLLKNKDTGKVRLLMRRDIV-HKICANHFLHQDMELKPM 141 (161)
Q Consensus 98 rGvG~lkil~~~~t~~~RilmR~d~~-~kv~lN~~I~~~m~~~~~ 141 (161)
-|.-.++|..|.....+||+-|.-+- .-|+||..|.++++|...
T Consensus 18 ~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnka 62 (409)
T KOG4590|consen 18 AALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKA 62 (409)
T ss_pred cccceeEEEeeccCCceeEEeeecccCcccccccccccCcceeec
Confidence 33445677777777789999997665 889999999999998764
No 23
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=37.46 E-value=33 Score=25.49 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=23.5
Q ss_pred cceeeeeeeceeeeeec---cceeeecccceee
Q psy11674 32 NETVLFEQRAKLYRFVD---KEWKERGVGQLKL 61 (161)
Q Consensus 32 ~E~~~f~~r~kl~~~~~---~~wkerGvg~~kl 61 (161)
.|..+|+.||..|.||+ +.|.--|-+.+++
T Consensus 2 ~E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V 34 (111)
T cd01206 2 GEQPIFSTRAHVFQIDPKTKKNWIPASKHAVTV 34 (111)
T ss_pred CccccceeeeEEEEECCCCcceeEeCCCCceeE
Confidence 37789999999999998 3898666555544
No 24
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=35.07 E-value=76 Score=25.02 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=30.7
Q ss_pred cceeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEEeee
Q psy11674 100 VGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWFAQD 154 (161)
Q Consensus 100 vG~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~a~D 154 (161)
.|.|||....+.-++.|++-...++.+.+..++...-.+++..-|.|-++.-..|
T Consensus 39 tGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~DSSRYFvlRv~d 93 (160)
T PF07933_consen 39 TGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDYAAVEPVIDSSRYFVLRVQD 93 (160)
T ss_dssp EEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS--EEE-TT--S-EEEEEEE
T ss_pred eeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCCCceEEeecccceEEEEEEc
Confidence 5788888554333457777777799999999999988888888888888776655
No 25
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=31.12 E-value=25 Score=21.59 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.1
Q ss_pred eeeEeeee-ccceeeeccceeeeee
Q psy11674 84 RAKLYRFV-DKEWKERGVGQLKLLK 107 (161)
Q Consensus 84 raKL~~~~-~~~WkerGvG~lkil~ 107 (161)
-.||++++ +..+|-||-|.|+.++
T Consensus 15 s~~L~r~~i~Ed~K~~~~~~L~FN~ 39 (43)
T PF09200_consen 15 SDKLFRADISEDYKTRGRKLLRFNG 39 (43)
T ss_dssp CCCCCCCCCCCCCCCTCCCCECEEE
T ss_pred hhhhhheeccccccccceeEEEccC
Confidence 35788886 5778999999999875
No 26
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=26.99 E-value=3.3e+02 Score=26.81 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=49.8
Q ss_pred CcceeeEEeeeeEeeeec--cceeeeccc-eeeeeecCCCCcEEEEEEeCCeeeEEEcccccCCcEEeecCCCCcEEEEE
Q psy11674 75 ENETVLFEQRAKLYRFVD--KEWKERGVG-QLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDMELKPMPNTKQAYIWF 151 (161)
Q Consensus 75 E~E~~lf~~raKL~~~~~--~~WkerGvG-~lkil~~~~t~~~RilmR~d~~~kv~lN~~I~~~m~~~~~~~~~~a~~w~ 151 (161)
+..+.++...|+||.|+. +.|.-..-. .++|.+ ++++-..+.-.+..+..+++.|.+.|.+.-. ....+++|.
T Consensus 245 ~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~---~~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~-~e~lSFiFN 320 (794)
T PF08553_consen 245 EAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIE---TGKWEYWLQIEGKDKIWLGQPVSSDMNPVFN-FEHLSFIFN 320 (794)
T ss_pred CccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEE---cCCeEEEEEEecCCceEEeeeccCCcCeEEE-cceeEEEEE
Confidence 344589999999999973 678755432 355553 3555455555566677899999999986643 455677776
Q ss_pred e
Q psy11674 152 A 152 (161)
Q Consensus 152 a 152 (161)
.
T Consensus 321 ~ 321 (794)
T PF08553_consen 321 Y 321 (794)
T ss_pred e
Confidence 4
No 27
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=24.34 E-value=1.1e+02 Score=21.87 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=27.7
Q ss_pred ceeeeeeeceeeeeec--cc-eee-ecccceeeecccC
Q psy11674 33 ETVLFEQRAKLYRFVD--KE-WKE-RGVGQLKLLKNKD 66 (161)
Q Consensus 33 E~~~f~~r~kl~~~~~--~~-wke-rGvg~~kl~~~~~ 66 (161)
..+++..+|.||.+++ +. |.- .+.|.+-++++..
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~ 45 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNS 45 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETT
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECC
Confidence 3688999999999975 44 998 8999998887653
Done!