RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11674
         (161 letters)



>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score =  118 bits (297), Expect = 1e-35
 Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 42/145 (28%)

Query: 14  FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVTTG 73
           F+P++PLPD++ V TGEE+E   F  RAKL+RF  +                        
Sbjct: 2   FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVE------------------------ 37

Query: 74  EENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLH 133
                              KEWKERG+G +K+L++K +GK+RLLMRR+ V KICANH++ 
Sbjct: 38  ------------------SKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYIS 79

Query: 134 QDMELKPMPNTKQAYIWFAQDYADE 158
            DM+L P   + ++++W A DYADE
Sbjct: 80  PDMKLTPNAGSDRSFVWHALDYADE 104


>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 146

 Score =  107 bits (268), Expect = 4e-31
 Identities = 52/147 (35%), Positives = 70/147 (47%), Gaps = 41/147 (27%)

Query: 12  PDFKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVT 71
           P F+PI+ LP E  + T EE+E  LF+ RAKL+RF  +                      
Sbjct: 4   PQFEPIVSLP-EQEIKTLEEDEEELFKMRAKLFRFASEND-------------------- 42

Query: 72  TGEENETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHF 131
                                 EWKERG G +KLLK+K+ G +RLLMRRD   KICANH+
Sbjct: 43  --------------------LPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHY 82

Query: 132 LHQDMELKPMPNTKQAYIWFAQDYADE 158
           +   MELKP   + +A++W       +
Sbjct: 83  ITPMMELKPNAGSDRAWVWNTHADFAD 109


>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 118

 Score =  100 bits (250), Expect = 9e-29
 Identities = 42/84 (50%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 77  ETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQ 134
           E VL+ QR KL+RF     +WKERG+G LK+LKN+  GK+R+LMRR+ V K+CANH++  
Sbjct: 1   EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT 60

Query: 135 DMELKPMPNTKQAYIWFAQDYADE 158
            M LKP+  + +A++W A D++D 
Sbjct: 61  TMNLKPLSGSDRAWMWLASDFSDG 84


>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 96.1 bits (239), Expect = 9e-27
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 44/144 (30%)

Query: 19  PLPDEVPVTTGEENETVLFEQRAKLYRFV--DKEWKERGVGQLKLLKNKDTGKVTTGEEN 76
            L ++V V TGEE E+ + + + KL+ F    + W ERG G L+L               
Sbjct: 5   CLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAS---------- 54

Query: 77  ETVLFEQRAKLYRFVDKEWKERGVGQLKLLKNKDTGKVRLLMRRDIVHKICANHFLHQDM 136
                                          +  T + RL+MR     ++  N  L   M
Sbjct: 55  ------------------------------TDDGTLQSRLVMRTQGSLRLILNTKLWAQM 84

Query: 137 ELKPMPNTKQAYIWFAQDYADEVV 160
           ++     ++++    A D  D+ V
Sbjct: 85  QIDKA--SEKSIHITAMDTEDQGV 106


>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 71.2 bits (174), Expect = 3e-17
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 76  NETVLFEQRAKLYRFVD--KEWKERGVGQL-----KLLKNKDTGKVRLLMRRDIV-HKIC 127
           +ETV+   RA +  + D  K W   G G       ++  N      R++ R+     ++ 
Sbjct: 2   SETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVV 61

Query: 128 ANHFLHQDMELKPMPNTKQAY 148
            N  + + ++          +
Sbjct: 62  INCAIVRGVKYNQATPNFHQW 82


>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 68.5 bits (167), Expect = 2e-16
 Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 76  NETVLFEQRAKLYRFVD--KEWKERG----VGQLKLLKNKDTGKVRLLMRRDIVHKICAN 129
           +E  + + RA +  + D  K+W   G      ++ +  +      R++ R+   H++  N
Sbjct: 1   SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVIN 60

Query: 130 HFLHQDMELKPMPNTKQAYIWFAQD 154
             + + ++      T+  + W    
Sbjct: 61  CAIPKGLKYNQA--TQTFHQWRDAR 83


>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans
          [TaxId: 920]}
          Length = 153

 Score = 24.8 bits (53), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 47 VDKEWKERGVGQLKLLKNKDTGKVTT 72
          +D  WKE  + Q+K +  KDTGKV+ 
Sbjct: 1  LDTTWKEATLPQVKAMLEKDTGKVSG 26


>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 177

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 14  FKPIIPLPDEVPVTTGEENETVLFEQRAKLYRFVD--KEWKERGVGQLKLLKNKDTG 68
           +K      D +P+  G+     LFE++    + +    +W  R +  L+ + +  TG
Sbjct: 122 YKIPRNEADGMPINVGDGG---LFEKKLWGLKVLQELSQWTVRSIHDLRFISSHQTG 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 620,262
Number of extensions: 27822
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 18
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.7 bits)