BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11675
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 95/173 (54%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKC 229
G + C +CGK+FSR HL +H H GEKP+KC C K+FS K L H TH+ K
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 230 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 289
++C C K+F+ R +L+AH H G P+ C EC K FS + L H + H G KP+ C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 290 VCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITS 342
C KSF ++ L H TH+ KPY C C KSF +R+ H G TS
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 96/172 (55%), Gaps = 1/172 (0%)
Query: 141 GIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
G KPY C C K+F++ +L H H G ++C +CGK+FS K L +H H GEK
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTH-TGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTC 260
P+KC C K+FS + +L H TH+ K + C C K+F+ HL+AH H G P+ C
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 261 LECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVK 312
EC K FS + L+ H + H G KP+ C C KSF ++ L H TH+ K
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 93/171 (54%), Gaps = 3/171 (1%)
Query: 84 EKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIK 143
EK ++C C K F R D L H H K Y C EC K + + +L H Q +H G K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEK 76
Query: 144 PYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFK 203
PY C C K+F+Q+ NL+ H H G + C +CGK+FS+ HL H H GEKP+K
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTH-TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 204 CSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEG 254
C C K+FS + +L+ H TH+ K ++C C K+F+ R L H H G
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 77/138 (55%)
Query: 190 VQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHT 249
V + + GEKP+ C C K+FS HL EH TH+ K ++C C K+F+ +K L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 250 NKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHS 309
H G P+ C EC K FS ++ L H + H G KP+AC C KSF Q L+ H TH+
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 310 KVKPYNCGICAKSFVQRN 327
KPY C C KSF + +
Sbjct: 130 GEKPYKCPECGKSFSRED 147
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 5/168 (2%)
Query: 35 CELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFC 92
C C K FS +H+ H + + C C +SF+D+K+ H H EK + C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 93 LKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSK 152
K F ++ L AH H K Y C EC K + L +H Q +H G KPY C C K
Sbjct: 84 GKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGK 141
Query: 153 AFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+F+++ NL H H G ++C +CGK+FSR+ L H H G+K
Sbjct: 142 SFSREDNLHTHQRTH-TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 3 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFT 60
+ + C C ++F+R+ L H H + +KC C K FSDK +H+ H + +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEE 120
C C +SF+ R H H EK ++C C K F + L AH H K Y C E
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPE 138
Query: 121 CDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
C K + + L +H Q +H G KPY C C K+F+++ L H H
Sbjct: 139 CGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPF 202
KPY C C K+F+Q NL+ H H G ++C +CGK+FS+ L +H H GEKP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTH-TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 203 KCSYCPKAFSHKGHLNEHLYTHSENK 228
KC C K+FS HL+ H TH K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 43/76 (56%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 316
P+ C EC K FS S L +H + H G KP+ C C KSF Q + LQ H TH+ KPY C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 317 GICAKSFVQRNTYIKH 332
C KSF + + +H
Sbjct: 64 PECGKSFSRSDHLSRH 79
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 233
++C +CGK+FS+ +L +H H GEKP+KC C K+FS L +H TH+ K ++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 234 YCPKTFTLRKHLKAHTNKHE 253
C K+F+ HL H H+
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%)
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 287
K ++C C K+F+ +L+ H H G P+ C EC K FS S+L +H + H G KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 288 CTVCNKSFLQKTQLQNHLYTHSKVK 312
C C KSF + L H TH K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 114 KKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSL 173
K Y C EC K + L H Q +H G KPY C C K+F+Q +L+ H H G
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH-TGEKP 60
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
++C +CGK+FSR HL +H H +K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPH 258
EKP+KC C K+FS +L +H TH+ K ++C C K+F+ L+ H H G P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 259 TCLECSKCFSTKSELNRHAQIH 280
C EC K FS L+RH + H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 338
KP+ C C KSF Q + LQ H TH+ KPY C C KSF Q + KH G
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 84 EKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIK 143
EK + C C K F + L+ H H K Y C EC K + +L H Q +H G K
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEK 59
Query: 144 PYVCEICSKAFTQQYNLKHHLLLH 167
PY C C K+F++ +L H H
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTH 83
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 1 MVQVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQV 58
M + + C C ++F+++++L+ H H + +KC C K FS +KH+ H +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 59 FTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ C C +SF+ + H H+ +K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 IAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKL 86
+ + +KC C K FS +KH+ H + + C C +SF+ + +H H EK
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 87 FSCNFCLKPFLRKDLLEAH 105
+ C C K F R D L H
Sbjct: 61 YKCPECGKSFSRSDHLSRH 79
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 225 SENKCFQCKY--CPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIH 280
SE + F C Y C K + HL+ H+ KH G P+ C +C + FS +L RH + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 281 GGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGI--CAKSFVQRNTYIKH 332
GVKPF C C + F + L+ H TH+ KP++C C K F + + ++H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 179 CGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
C K + + HL HS H GEKP++C + C + FS L H H+ K FQCK C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 237 KTFTLRKHLKAHTNKHEGVLPHTCL--ECSKCFSTKSELNRHAQIH 280
+ F+ HLK HT H G P +C C K F+ EL RH +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 143 KPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCD--QCGKAFSRKGHLVQHSFVHGG 198
+P++C C+K + + +L+ H H G ++CD C + FSR L +H H G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHT-GEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKY--CPKTFTLRKHLKAHTNKH 252
KPF+C C + FS HL H TH+ K F C++ C K F L H N H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 83 KEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCE--ECDKYYLSQGELDSHVQTS 138
+++ F C + C K + + L+ H H K Y C+ +C++ + +L H Q
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRH-QRR 60
Query: 139 HRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAFSRKGHLVQHSFVH 196
H G+KP+ C+ C + F++ +LK H H G F C C K F+R LV+H +H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHT-GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 64 CMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCE--EC 121
C R F+ + H +H K F C C + F R D L+ H + H K ++C C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSC 102
Query: 122 DKYYLSQGELDSH 134
K + EL H
Sbjct: 103 QKKFARSDELVRH 115
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 2 VQVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCEL--CYKMF--SDKLL 47
V+ F C+ CQ+ F+R+ LK H+ H + C C K F SD+L+
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 262 ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAK 321
+C K F+ KS+ +RH +H G++P+ C VC K F K L H+ H+ +KPY C ICAK
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 322 SFVQRNTYIKHL 333
F+ R+++ +H+
Sbjct: 74 RFMWRDSFHRHV 85
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 225 SENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVK 284
S +K + C+ C K+FT + H + H G+ P+ C C K F K L H +IH G+K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 285 PFACTVCNKSFLQKTQLQNHL 305
P+ C +C K F+ + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
G+ L+ C QCGK+F+ K +H +H G +P+ C C K F K HL H+ H+ K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 229 CFQCKYCPKTFTLRKHLKAHTN 250
++C C K F R H
Sbjct: 65 PYECNICAKRFMWRDSFHRHVT 86
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
G+K + C C K+F+HK + H+ H + + C C K F ++ HL H H G+ P
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 258 HTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQN 303
+ C C+K F + +RH T C KS+ QN
Sbjct: 66 YECNICAKRFMWRDSFHRHV-----------TSCTKSYEAAKAEQN 100
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGV 339
G K + C C KSF K+Q H+ H ++PY CG+C K F ++ + H++I G+
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 84 EKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIK 143
+KL+ C C K F K + H+ S+H ++ Y C C K + + L H++ H GIK
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK 64
Query: 144 PYVCEICSKAFTQQYNLKHHL 164
PY C IC+K F + + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 31 QLHKCELCYKMFSDKLLYEKHKMVHRQV--FTCEVCMRSFNDRKEFNEHIMKHEKEKLFS 88
+L+ C+ C K F+ K ++H +H + + C VC + F + H+ H K +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 89 CNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEE 120
CN C K F+ +D HV S K + E+
Sbjct: 68 CNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQ 99
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 114 KKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSL 173
K Y C+ C K + + + D H+ + H G++PY C +C K F +++L H+ +H G
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKP 65
Query: 174 FRCDQCGKAF 183
+ C+ C K F
Sbjct: 66 YECNICAKRF 75
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 3 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQV--FT 60
+++ C+ C ++FT + H +H + + C +C K F K H +H + +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 61 CEVCMRSFNDRKEFNEHI 78
C +C + F R F+ H+
Sbjct: 68 CNICAKRFMWRDSFHRHV 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS +EL RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FSR L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F++ L H+ +H G F+C C + FSR HL H H GEK
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
PF C C + F+ H H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTHSKVK 312
F + + + H H + K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 30/106 (28%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 121
E C R F+ E HI H +K F C C++ F R D L H+
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------------- 55
Query: 122 DKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+H G KP+ C+IC + F + K H +H
Sbjct: 56 ----------------THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
F C +C + F+R+ L H H + C++C + F+ ++H +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS EL RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FSR L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F++ L H+ +H G F+C C + FSR HL H H GEK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
PF C C + F+ H H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTHSKVK 312
F + + + H H + K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 84 EKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRG 141
E+ ++C C + F R D L H+ +H K + C C + + L +H++T H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 142 IKPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+IC + F + K H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 1 MVQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--R 56
M + + C V C + F+R+ +L H +H + +C +C + FS H H
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ F C++C R F E H H ++K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS K+ L+ H +IH G KPF C +C ++F Q T L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F +T +H +I
Sbjct: 64 ACDICGRKFATLHTRDRHTKI 84
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F+Q+ NL H+ +H G F+C C + FS+ L QH H GEK
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHT-GQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
PF C C + F+ + H H K
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS K +L+ H+ H+ K FQC+ C + F+ L H H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+T +RH +IH
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FS+K +L H +H G+KPF+C C + FS LN+H+ TH+ K F C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 237 KTF----TLRKHLKAH 248
+ F T +H K H
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 114 KKYNC--EECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGN 171
+ Y C E CD+ + + LD+H++ H G KP+ C IC + F+Q L H+ H G
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTH-TGE 60
Query: 172 SLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
F CD CG+ F+ +H+ +H +K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ + +L H H G P C C + FS + LN+H + H G KPFAC +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTHSKVK 312
F H H + K
Sbjct: 72 FATLHTRDRHTKIHLRQK 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS K + H +H ++ F C +CMR+F+ N+HI H EK F+C+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 94 KPF 96
+ F
Sbjct: 70 RKF 72
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 84 EKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRG 141
E+ ++C C + F +K L+ H+ +H K + C C + + L+ H++T H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTG 59
Query: 142 IKPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+IC + F + H +H
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 1 MVQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--R 56
M + + C V C + F++ +L H +H + +C +C + FS +H H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ F C++C R F + H H ++K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS K+ L+ H +IH G KPF C +C ++F Q+ L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F +T +H +I
Sbjct: 64 ACDICGRKFATLHTRTRHTKI 84
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS K +L+ H+ H+ K FQC+ C + F+ + L AH H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+T RH +IH
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 114 KKYNC--EECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGN 171
+ Y C E CD+ + + LD+H++ H G KP+ C IC + F+QQ +L H+ H G
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTH-TGE 60
Query: 172 SLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
F CD CG+ F+ +H+ +H +K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FS+K +L H +H G+KPF+C C + FS + LN H+ TH+ K F C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 237 KTF----TLRKHLKAH 248
+ F T +H K H
Sbjct: 70 RKFATLHTRTRHTKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F+Q+ NL H+ +H G F+C C + FS++ L H H GEK
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 201 PFKCSYCPKAFS 212
PF C C + F+
Sbjct: 62 PFACDICGRKFA 73
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ + +L H H G P C C + FS ++ LN H + H G KPFAC +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 295 F 295
F
Sbjct: 72 F 72
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS K + H +H ++ F C +CMR+F+ + N HI H EK F+C+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 94 KPF 96
+ F
Sbjct: 70 RKF 72
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 121
E C R F+ + + HI H +K F C C++ F ++ L AH+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-------------- 55
Query: 122 DKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+H G KP+ C+IC + F + H +H
Sbjct: 56 ----------------THTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 1 MVQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--R 56
M + + C V C + F++ +L H +H + +C +C + FS + H H
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ F C++C R F H H ++K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS EL RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 63 ACDICGRKFARSDERKRHTKI 83
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FSR L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F++ L H+ +H G F+C C + FSR HL H H GEK
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTH 224
PF C C + F+ H H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 295 FLQKTQLQNHLYTH 308
F + + + H H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 84 EKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRG 141
E+ ++C C + F R D L H+ +H K + C C + + L +H++T H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 58
Query: 142 IKPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+IC + F + K H +H
Sbjct: 59 EKPFACDICGRKFARSDERKRHTKIH 84
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 69 RKFARSDERKRHT 81
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
F C +C + F+R+ L H H + C++C + F+ ++H +H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS EL RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FSR L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F++ L H+ +H G F+C C + FSR HL H H GEK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTH 224
PF C C + F+ H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTH 308
F + + + H H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 84 EKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRG 141
E+ ++C C + F R D L H+ +H K + C C + + L +H++T H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 142 IKPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+IC + F + K H +H
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
F C +C + F+R+ L H H + C++C + F+ ++H +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 231 QCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ---IHGGVKPFA 287
+C C K F + +LK H KH G P C +C KC+ K L H ++ + F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 288 CTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITSN 343
C+VC ++F ++ +L+ H+ +H+ PY C C++ F+Q+ H+ +H +S
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
G+S C C K F K +L H+ H GEKPF+C C K + K +L EH + N+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 229 ---CFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHA-QIHGG 282
F C C +TF R L+ H H G +P+ C CS+ F K +L H ++H G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 7 CEVCQQAFTRNADLKVHSMVH---KIAQLHKCELCYKMFSDKLLYEKHKMVHR--QVFTC 61
C C + F LKVH+ H K + KC CY + L +E ++R QVFTC
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVH 110
VC +F R E H++ H E + C+ C + F++K L++H+ +H
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH--VNSVHKDVKKYNC 118
C C + F + H KH EK F C C K + RK+ L H N +++ + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 119 EECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLL-LHGDGNS 172
C + + + EL H+ SH G PY C CS+ F Q+ +L+ H++ LH +S
Sbjct: 70 SVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 3 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKH 51
QVFTC VCQ+ F R +L++H + H +KC C + F K + H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS S L RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F+ NL H+ +H G F+C C + FSR HL H H GEK
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
PF C C + F+ H H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FS +L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS +L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ +L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTHSKVK 312
F + + + H H + K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FSD +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 30/106 (28%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 121
E C R F+D HI H +K F C C++ F R D L H+
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------------- 55
Query: 122 DKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+H G KP+ C+IC + F + K H +H
Sbjct: 56 ----------------THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 1 MVQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--R 56
M + + C V C + F+ +++L H +H + +C +C + FS H H
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ F C++C R F E H H ++K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS ++L RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FSR L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F++ +L H+ +H G F+C C + FSR HL H H GEK
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
PF C C + F+ H H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTHSKVK 312
F + + + H H + K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 30/106 (28%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 121
E C R F+ + HI H +K F C C++ F R D L H+
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------------- 55
Query: 122 DKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+H G KP+ C+IC + F + K H +H
Sbjct: 56 ----------------THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
F C +C + F+R+ L H H + C++C + F+ ++H +H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPY 314
P+ C C + FS L RH +IH G KPF C +C ++F + L H+ TH+ KP+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 315 NCGICAKSFVQRNTYIKHLEI 335
C IC + F + + +H +I
Sbjct: 64 ACDICGRKFARSDERKRHTKI 84
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
+ C + FS+ G L +H +H G+KPF+C C + FS HL H+ TH+ K F C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 237 KTFTLRKHLKAHTNKH 252
+ F K HT H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVL 256
E+P+ C C + FS G L H+ H+ K FQC+ C + F+ HL H H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 257 PHTCLECSKCFSTKSELNRHAQIH 280
P C C + F+ E RH +IH
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 143 KPYVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+PY C E C + F+Q +L H+ +H G F+C C + FSR HL H H GEK
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
PF C C + F+ H H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKS 294
C + F+ L H H G P C C + FS L H + H G KPFAC +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 295 FLQKTQLQNHLYTHSKVK 312
F + + + H H + K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCL 93
E C + FS +H +H ++ F C +CMR+F+ HI H EK F+C+ C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 94 KPFLRKDLLEAHV 106
+ F R D + H
Sbjct: 70 RKFARSDERKRHT 82
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 30/106 (28%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEEC 121
E C R F+ HI H +K F C C++ F R D L H+
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------------- 55
Query: 122 DKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+H G KP+ C+IC + F + K H +H
Sbjct: 56 ----------------THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 1 MVQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--R 56
M + + C V C + F+++ L H +H + +C +C + FS H H
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ F C++C R F E H H ++K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPF 202
K ++C+ C + FT+ YNL H H D + CD C KAF R+ HL H ++H EKPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 203 KCSYCPKAFSHKGHLNEHLYTHSEN 227
KC C K F L H H +
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 233
F C CG+ F++ +L+ H H E+P+ C C KAF + HL +H Y HS+ K F+C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 234 YCPKTFTLRKHLKAHTNKH 252
C K F + L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGIC 319
C C + F+ L H + H +P+ C +C+K+F ++ L++H Y HSK KP+ C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 320 AKSFVQRNTYIKHLEIVHGVITSNSA 345
K F Q T H + +H +S +A
Sbjct: 80 GKGFCQSRTLAVH-KTLHMQTSSPTA 104
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 35/79 (44%)
Query: 230 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 289
F CK+C + FT +L H H P+TC C K F + L H IH KPF C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 290 VCNKSFLQKTQLQNHLYTH 308
C K F Q L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 111 KDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDG 170
K K++ C+ C +++ L H +T H +PY C+IC KAF +Q +L+ H +H
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 171 NSLFRCDQCGKAFSRKGHLVQHSFVH 196
F+C +CGK F + L H +H
Sbjct: 72 KP-FKCQECGKGFCQSRTLAVHKTLH 96
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPH 258
+K F C +C + F+ +L H TH++ + + C C K F + HL+ H H P
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 259 TCLECSKCFSTKSELNRHAQIH 280
C EC K F L H +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 56 RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKK 115
++ F C+ C R F H H E+ ++C+ C K F R+D L H +H K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKP 73
Query: 116 YNCEECDKYYLSQGELDSH 134
+ C+EC K + L H
Sbjct: 74 FKCQECGKGFCQSRTLAVH 92
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 62
F C+ C + FT++ +L +H H + + C++C+K F + H+ +H + F C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 63 VCMRSF 68
C + F
Sbjct: 78 ECGKGF 83
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 35 CELCYKMFSDK--LLYEKHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFC 92
C+ C + F+ LL + + +TC++C ++F + +H H KEK F C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 93 LKPFLRKDLLEAH 105
K F + L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 3 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQV 58
+ +TC++C +AF R L+ H +H + KC+ C K F HK +H Q
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 338
K F C C + F + L H TH+ +PY C IC K+F +R +++ +H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF-RRQDHLRDHRYIHS 69
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 207 CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCL--ECS 264
C K F + +HL+TH + C C K F LK H H G P C C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 265 KCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVK 312
K FS L H +IH G +P+ C CNK F Q T L++H+ TH+K K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 121 CDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRC--DQ 178
C K + + H+ T G + +VC C KAF + LK H L+H G F+C +
Sbjct: 13 CTKMFRDNSAMRKHLHT--HGPRVHVCAECGKAFVESSKLKRHQLVH-TGEKPFQCTFEG 69
Query: 179 CGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENK 228
CGK FS +L H +H G++P+ C + C K F+ +L H+ TH++ K
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 233 KYCPKTF----TLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFAC 288
K C K F +RKHL H G H C EC K F S+L RH +H G KPF C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-----GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 289 TV--CNKSFLQKTQLQNHLYTHSKVKPYNCGI--CAKSFVQRNTYIKHL 333
T C K F L+ H+ H+ +PY C C K F Q H+
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 53/134 (39%), Gaps = 31/134 (23%)
Query: 38 CYKMFSDKLLYEKHKMVH-RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPF 96
C KMF D KH H +V C C ++F + + H + H EK F C F
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF----- 67
Query: 97 LRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEI--CSKAF 154
E C K + L +HV+ H G +PYVC C+K F
Sbjct: 68 ----------------------EGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKF 104
Query: 155 TQQYNLKHHLLLHG 168
Q NLK H+L H
Sbjct: 105 AQSTNLKSHILTHA 118
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 3 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKC--ELCYKMFSDKLLYEKHKMVHR--QV 58
+V C C +AF ++ LK H +VH + +C E C K FS H +H +
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 59 FTC--EVCMRSFNDRKEFNEHIMKHEKEK 85
+ C + C + F HI+ H K K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 143 KPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSFVHGG 198
K Y+C C A+ + + L+ HL H G F C + C K F+ HL +HS H G
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKH-TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHLYT-HSENKC-FQCKY--CPKTFTLRKHLKAHTNKH 252
EK F C C F+ K ++ +H H+ C + C + C K F LK H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 253 EGVLPHTCLE--CSKCFSTKSELNRHAQIHGGV---KPFACTVCNKSF 295
LP+ C C K FS S L RH ++H G K +C+ K++
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 74/188 (39%), Gaps = 38/188 (20%)
Query: 64 CMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDK 123
C ++N + H+ KH EK F C E C+K
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKE---------------------------EGCEK 52
Query: 124 YYLSQGELDSHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHL-LLHGDGNSLFRC--DQ 178
+ S L H T H G K + C+ C FT + N+K H H ++ C +
Sbjct: 53 GFTSLHHLTRHSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN 111
Query: 179 CGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQ---CK 233
CGKAF + L H F H + P++C + C K FS L H H+ C + C
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 171
Query: 234 YCPKTFTL 241
+ KT+TL
Sbjct: 172 FVGKTWTL 179
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 34/169 (20%)
Query: 178 QCGKAFSRKGHLVQHSFVHGGEKPFKC--SYCPKAFSHKGHLNEHLYTHSENKCFQCKY- 234
CG A+++ L H H GEKPF C C K F+ HL H TH+ K F C
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 235 -CPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV--C 291
C FT + ++K H N+ + + + C C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNI--------------------------KICVYVCHFENC 112
Query: 292 NKSFLQKTQLQNHLYTHSKVKPYNCG--ICAKSFVQRNTYIKHLEIVHG 338
K+F + QL+ H ++H++ PY C C K F + +H ++ G
Sbjct: 113 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSC--NFCLKPFLRKDLLEAHVNSVHK-DVKKYNC 118
E C + F H + H EK F+C + C F K ++ H N H + Y C
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 119 --EECDKYYLSQGELDSHVQTSHRGIKPYVC--EICSKAFTQQYNLKHHLLLHG 168
E C K + +L H Q SH PY C E C K F+ LK H +H
Sbjct: 108 HFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNC 316
PH C C KCFS K +L H + H GVKP+ C C+ + + L HL HS +P+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 317 GICAKSFVQRNT 328
IC + RN+
Sbjct: 68 QICP--YASRNS 77
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 175 RCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKY 234
+C+ CGK FSRK L H H G KP+KC C A + LN+HL HS+ + F+C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 235 CP----KTFTLRKHLKAHTN 250
CP + L HL++HT
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 231 QCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTV 290
+C+ C K F+ + LK H H GV P+ C C + S LN+H +IH +PF C +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 291 CNKSFLQKTQLQNHLYTHS 309
C + +QL HL +H+
Sbjct: 70 CPYASRNSSQLTVHLRSHT 88
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 144 PYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFK 203
P+ CE+C K F+++ LK H+ H G ++C C A + L +H +H E+PFK
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 204 CSYCPKAFSHKGHLNEHLYTHSEN 227
C CP A + L HL +H+ +
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGD 90
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 89 CNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCE 148
C C K F RKD L+ H+ H VK Y C+ CD L+ H++ H +P+ C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQ 68
Query: 149 ICSKAFTQQYNLKHHLLLH-GD 169
IC A L HL H GD
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 281 GGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 335
G P C VC K F +K +L+ H+ H+ VKPY C C + ++ KHL I
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 7 CEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVC 64
CEVC + F+R LK H H + +KC+ C +D KH +H + F C++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 65 MRSFNDRKEFNEHIMKHEKE 84
+ + + H+ H +
Sbjct: 71 PYASRNSSQLTVHLRSHTGD 90
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 33 HKCELCYKMFSDKLLYEKHKMVHRQV--FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCN 90
HKCE+C K FS K + H H V + C+ C + D N+H+ H E+ F C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 91 FCLKPFLRKDLLEAHVNS 108
C L H+ S
Sbjct: 69 ICPYASRNSSQLTVHLRS 86
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCK 233
F C CGK+F R L H +H +P+ C YC K F K + +H + H+ K +C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 234 YCPKTFTLRKHLKAHTNKHEG 254
C K F+ +L H+ KH G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%)
Query: 202 FKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCL 261
F C C K+F L+ HL HS+ + + C+YC K F + +K HT H G PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 262 ECSKCFSTKSELNRHAQIHGG 282
C K FS S L H++ H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGIC 319
C C K F S L+ H IH +P+ C C K F QK+ ++ H + H+ KP+ C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 320 AKSFVQRNTYIKH 332
K+F Q + I H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%)
Query: 230 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 289
F CK C K+F L H H P+ C C K F KS++ +H IH G KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 290 VCNKSFLQKTQLQNHLYTHS 309
VC K+F Q + L H H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 116 YNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFR 175
++C+ C K + L +H+ H +PY C+ C K F Q+ ++K H +H G +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHK 59
Query: 176 CDQCGKAFSRKGHLVQHSFVHGG 198
C CGKAFS+ +L+ HS H G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 87 FSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYV 146
F C C K F R L H+ +H D + Y C+ C K + + ++ H H G KP+
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59
Query: 147 CEICSKAFTQQYNLKHHLLLH 167
C++C KAF+Q NL H H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 62
F C++C ++F R++ L H ++H + + C+ C K F K +KH +H + C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 63 VCMRSFNDRKEFNEHIMKH 81
VC ++F+ H KH
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 286 FACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 338
F C +C KSF + + L HL HS +PY C C K F Q++ KH I G
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 232 CKY--CPKTFTLRKHLKAHTNKHEGVLPHTCL--ECSKCFSTKSELNRHAQIHGGVKPFA 287
C Y C K +T HLKAH H G P+ C C F+ EL RH + H G KPF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 288 CTVCNKSFLQKTQLQNHLYTH 308
C VCN+SF + L H+ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 179 CGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
C K +++ HL H H GEKP+KC++ C F+ L H H+ K FQC C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 237 KTFTLRKHLKAHTNKHE 253
++F+ HL H +H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 263 CSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNCGICA 320
C+K ++ S L H + H G KP+ CT C+ F + +L H H+ KP+ CG+C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 321 KSFVQRNTYIKHLE 334
+SF + + H++
Sbjct: 83 RSFSRSDHLALHMK 96
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 150 CSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYC 207
C+K +T+ +LK HL H G ++C + C F+R L +H H G KPF+C C
Sbjct: 23 CTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 208 PKAFSHKGHLNEHLYTH 224
++FS HL H+ H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 82 EKEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNC--EECDKYYLSQGELDSHVQT 137
EK ++ C++ C K + + L+AH+ + H K Y C E CD + EL H +
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYR- 68
Query: 138 SHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
H G KP+ C +C+++F++ +L H+ H
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 10 CQQAFTRNADLKVHSMVHKIAQLHKC--ELCYKMF--SDKLLYEKHKMVHRQVFTCEVCM 65
C + +T+++ LK H H + +KC E C F SD+L K + F C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 66 RSFNDRKEFNEHIMKHE 82
RSF+ H+ +H+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 70/174 (40%), Gaps = 33/174 (18%)
Query: 175 RCDQCGKAFSRKGHLVQH---SFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQ 231
R D C + F + LV H +HG K F C H G + L
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVC--------HWGGCSREL---------- 46
Query: 232 CKYCPKTFTLRKHLKAHTNKHEGVLPHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACT 289
+ F + L H +H G PH C C K +S L H + H G KP+ C
Sbjct: 47 -----RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 290 --VCNKSFLQKTQLQNHL-YTHSKVKPYNCGI--CAKSFVQRNTYIKHLEIVHG 338
C+K+F + H THS KPY C + C K + ++ KH++ VHG
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 121 CDKYYLSQGELDSHVQTSH--RGIKPYVCEI--CSK---AFTQQYNLKHHLLLHGDGNSL 173
C + + SQ +L H+ + H K +VC CS+ F QY L H+ H G
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH-TGEKP 67
Query: 174 FRC--DQCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHL-YTHSENK 228
+C + C K++SR +L H H GEKP+ C + C KAFS+ +H THS K
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 229 CFQCKY--CPKTFT----LRKHLKA 247
+ CK C K +T LRKH+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNC 118
C +R F + H+ +H EK C F C K + R + L+ H+ S H K Y C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMC 100
Query: 119 EE--CDKYYLSQGELDSHVQTSHRGIKPYVCEI--CSKAFTQQYNLKHHL-LLHG 168
E C K + + + H +H KPYVC++ C+K +T +L+ H+ +HG
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 60 TCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYN 117
T E C +S++ + H+ H EK + C C K F H N H + K Y
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Query: 118 CE--ECDKYYLSQGELDSHVQTSH 139
C+ C K Y L HV+T H
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 6 TCEVCQQAFTRNADLKVHSMVHKIAQLHKC--ELCYKMF---SDKLLYEKHKMVHRQVFT 60
T E C+++++R +LK H H + + C E C K F SD+ ++ + + +
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Query: 61 CEV--CMRSFNDRKEFNEHI 78
C++ C + + D +H+
Sbjct: 131 CKLPGCTKRYTDPSSLRKHV 150
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 121 CDKYYLSQGELDSHVQTSHRGIKPYVCEIC--------SKAFTQQYNLKHHLLLHGDGNS 172
CD+ + + EL +HV H G +C K+F +Y L +H+ +H G
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH-TGEK 89
Query: 173 LFRCD--QCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENK 228
F C CGK F+R +L H H GEKPFKC + C + F++ +H++ H+ +K
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 150 CSKAFTQQYNLKHHLLLHGDGNS--------LFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
C + F+ + L H+ + G C + GK+F K LV H VH GEKP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 202 FKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKY--CPKTFT----LRKHLKAHTNKHE 253
F C + C K F+ +L H TH+ K F+C++ C + F +KH+ HT+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 254 G 254
G
Sbjct: 151 G 151
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 233 KYCPKTFTLRKHLKAH-TNKHEGVLP---HTCL--EC---SKCFSTKSELNRHAQIHGGV 283
K C +TF+ L H T +H G H C EC K F K +L H ++H G
Sbjct: 29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Query: 284 KPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNCGI--CAKSFVQRNTYIKHLEI 335
KPF C C K F + L+ H TH+ KP+ C C + F + KH+ +
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKLFSCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNC 118
C +SF + + HI H EK F C F C K F R + L+ H H K + C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKC 123
Query: 119 --EECDKYYLSQGELDSHV 135
E CD+ + + + H+
Sbjct: 124 EFEGCDRRFANSSDRKKHM 142
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 10 CQQAFTRNADLKVHSMVHKIAQLHKCEL--CYKMFSDKLLYEKHKMVH 55
C + F R+ +LK+H H + KCE C + F++ +KH VH
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 60 TCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDV-KKYNC 118
CE+C + F D N H + H EK +SC C F RKD + HV S V K Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 119 EECDKYYLSQGELDSHVQTSHRG 141
+ C K + L+ H++ H G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 259 TCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTH--SKVKPYNC 316
C C K F LNRH H G KP++C VC F +K ++ H+ +H S KPY C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 317 GICAKSFVQRNTYIKHLEIVHGVITSN 343
C K F + + H++ VH +S
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 141 GIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE- 199
G CEIC K F Y+L H L H G + C CG F RK + H H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 200 -KPFKCSYCPKAFSHKGHLNEHL 221
KP+ C C K FS HLN H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH--SEN 227
G+S C+ CGK F HL +H H GEKP+ C C F K ++ H+ +H S
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNK 251
K + C+ C K F+ HL H +
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 35 CELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKE--KLFSCN 90
CE+C K+F D +HK+ H + ++C VC F + + H+ H+ K + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 91 FCLKPFLRKDLLEAHVNSVH 110
C K F R D L H+ VH
Sbjct: 70 SCGKGFSRPDHLNGHIKQVH 89
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 118 CEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH-GDGNSLFRC 176
CE C K + L+ H + SH G KPY C +C F ++ + +H+ H G + C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 177 DQCGKAFSRKGHLVQH 192
CGK FSR HL H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 225 SENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGV- 283
S + C+ C K F HL H H G P++C C F K ++ H + H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 284 -KPFACTVCNKSFLQKTQLQNHL 305
KP+ C C K F + L H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVI 340
G AC +C K F L H +HS KPY+C +C F +++ H+ G +
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 32/54 (59%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSEN 227
+ C +CGKAFSR LVQH VH GEKP+KC C KAFS L H H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHS 309
P+ C+EC K FS S L +H ++H G KP+ C C K+F Q + L NH H+
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 335
KP+ C C K+F + + L H H+ KPY C C K+F Q + I H I
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 114 KKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNS 172
K Y C EC K + L H Q H G KPY C C KAF+Q L +H +H G S
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%)
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIH 280
K + C C K F+ L H H G P+ CLEC K FS S L H +IH
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKH 252
EKP+ C C KAFS L +H H+ K ++C C K F+ L H H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
+ C C +AF+R++ L H VH + +KC C K FS H+ +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 168 GDGNSLFRCD--QCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYT 223
G + CD CGK +++ HL H H GEKP+ C + C F+ L H
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 224 HSENKCFQCKYCPKTFTLRKHLKAHTNKH 252
H+ ++ FQC+ C + F+ HL H +H
Sbjct: 61 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 225 SENKCFQCKY--CPKTFTLRKHLKAHTNKHEGVLPHTCLE--CSKCFSTKSELNRHAQIH 280
S C Y C KT+T HLKAH H G P+ C C F+ EL RH + H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 281 GGVKPFACTVCNKSFLQKTQLQNHLYTH 308
G +PF C C+++F + L H+ H
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 150 CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSFVHGGEKPFKCSYC 207
C K +T+ +LK HL H G + CD CG F+R L +H H G +PF+C C
Sbjct: 14 CGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 208 PKAFSHKGHLNEHLYTH 224
+AFS HL H+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 255 VLPHTC--LECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSK 310
HTC C K ++ S L H + H G KP+ C C F + +L H H+
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 311 VKPYNCGICAKSFVQRNTYIKHLE 334
+P+ C C ++F + + H++
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALHMK 87
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 88 SCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEE--CDKYYLSQGELDSHVQTSHRGIK 143
+C++ C K + + L+AH+ + H K Y+C+ C + EL H + H G +
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR 65
Query: 144 PYVCEICSKAFTQQYNLKHHLLLH 167
P+ C+ C +AF++ +L H+ H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 2 VQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQVF 59
TC+ C + +T+++ LK H H + + C+
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDW---------------------- 41
Query: 60 TCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHV 106
+ C F E H KH + F C C + F R D L H+
Sbjct: 42 --DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 86
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 179 CGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCP 236
CGK +++ HL H H GEKP+ C + C F+ L H H+ ++ FQC+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 237 KTFTLRKHLKAHTNKH 252
+ F+ HL H +H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLE--CSKCFSTKSELNRHAQIHGGVKPFACTVCN 292
C KT+T HLKAH H G P+ C C F+ EL RH + H G +PF C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 293 KSFLQKTQLQNHLYTH 308
++F + L H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 150 CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSFVHGGEKPFKCSYC 207
C K +T+ +LK HL H G + CD CG F+R L +H H G +PF+C C
Sbjct: 13 CGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 208 PKAFSHKGHLNEHLYTH 224
+AFS HL H+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 255 VLPHTC--LECSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTHSK 310
HTC C K ++ S L H + H G KP+ C C F + +L H H+
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 311 VKPYNCGICAKSFVQRNTYIKHLE 334
+P+ C C ++F + + H++
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMK 86
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 88 SCNF--CLKPFLRKDLLEAHVNSVHKDVKKYNCEE--CDKYYLSQGELDSHVQTSHRGIK 143
+C++ C K + + L+AH+ + H K Y+C+ C + EL H + H G +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHR 64
Query: 144 PYVCEICSKAFTQQYNLKHHLLLH 167
P+ C+ C +AF++ +L H+ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 2 VQVFTCEV--CQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQVF 59
TC+ C + +T+++ LK H H + + C+
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDW---------------------- 40
Query: 60 TCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHV 106
+ C F E H KH + F C C + F R D L H+
Sbjct: 41 --DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 286 FACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVH 337
F C VC ++F ++ L+ H +H+ KPY CG+C ++F +R+ I+H + +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 59 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVH 110
F CEVC R+F ++ H H EK + C C + F R+DLL H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEH 220
F C+ C +AF+R+ HL +H H EKP+ C C +AF+ + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 145 YVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSF-VHGG 198
+VCE+C++AF +Q +LK H H + + C C +AF+R+ L++H+ +H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 230 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQ-IHGG 282
F C+ C + F ++HLK H H P+ C C++ F+ + L RHAQ IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 202 FKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNK-HEGVL 256
F C C +AF+ + HL H +H+ K + C C + FT R L H K H G L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 259 TCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNH 304
C C++ F+ + L RH + H KP+ C +CN++F ++ L H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKH 51
F CEVC +AF R LK H H + + C LC + F+ + L +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 116 YNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGN 171
+ CE C + + Q L H + SH KPY C +C++AFT++ L H GN
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 87 FSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRG 141
F C C + F R++ L+ H S H + K Y C C++ + + L H Q H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHS 225
++CD+CGK+FS L +H H GEKP+KC C KAF + HL H H+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
C EC K FS S+L++H + H G KP+ C C K+F+Q++ L H H+ P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 140 RGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
R + Y C+ C K+F+ +L H H G ++CD+CGKAF ++ HL+ H VH G
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Query: 200 KP 201
P
Sbjct: 73 GP 74
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITSN 343
+ + C C KSF + L H TH+ KPY C C K+F+QR+ I H + G S+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Query: 344 S 344
Sbjct: 77 G 77
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
+ +KC C K+FSH L++H TH+ K ++C C K F R HL H H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 111 KDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNL-KHHLLLHGD 169
++ ++Y C+EC K + +L H +T H G KPY C+ C KAF Q+ +L HH + G
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Query: 170 GNS 172
G S
Sbjct: 73 GPS 75
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 222 YTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHG 281
+ E + ++C C K+F+ L H H G P+ C EC K F +S L H ++H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 282 GVKP 285
G P
Sbjct: 71 GSGP 74
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 56 RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAH 105
R+ + C+ C +SF+ + ++H H EK + C+ C K F+++ L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
+ C+ C ++F+ ++DL H H + +KC+ C K F + H VH
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 79 MKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTS 138
+ + + + C+ C K F L H H K Y C+EC K ++ + L H +
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRV- 68
Query: 139 HRGIKP 144
H G P
Sbjct: 69 HTGSGP 74
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
KPY C+ C +F + NL H +H G +RC+ CG F+R +L H+ +H GEKP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
++CD+C +F KG+L H VH GEKP++C+ C F+ +L H HS K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
+KP+KC C +F +KG+L H H+ K ++C C F +LK HT H G P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 114 KKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
K Y C+ C + +G L SH +T H G KPY C IC F + NLK H +H
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
P+ C C F K L H +H G KP+ C +C F + L+ H HS KP
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 227 NKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKP 285
+K ++C C +F + +L +H H G P+ C C F+ + L H +IH G KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVHG 338
KP+ C C SF K L +H H+ KPY C IC F + H I G
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 3 QVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH 55
+ + C+ CQ +F +L H VH + ++C +C F+ + H +H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHV 106
+ + C+ C SF + H H EK + CN C F R L+ H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 33 HKCELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+KC+ C F K HK VH + + C +C FN H H EK
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHS 225
+ C + FSR L +H +H G+KPF+C C + FS HL H+ TH+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 257 PHTCL--ECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHS 309
P+ C C + FS EL RH +IH G KPF C +C ++F + L H+ TH+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 106 VNSVHKDVKKYNC--EECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHH 163
+N V ++ Y C E CD+ + EL H++ H G KP+ C IC + F++ +L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 164 LLLH 167
+ H
Sbjct: 69 IRTH 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 283 VKPFACTV--CNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLE 334
++P+AC V C++ F + +L H+ H+ KP+ C IC ++F + + H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 193 SFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTN 250
++V +P+ C C + FS L H+ H+ K FQC+ C + F+ HL H
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Query: 251 KH 252
H
Sbjct: 71 TH 72
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 142 IKPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVH 196
++PY C + C + F++ L H+ +H G F+C C + FSR HL H H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 62 EVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNS 108
E C R F+ E HI H +K F C C++ F R D L H+ +
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 36 ELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKH 81
E C + FS +H +H ++ F C +CMR+F+ HI H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 283 VKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVH 337
+KPF C +C ++F + L H+ TH+ KP+ C IC + F + + +H +I H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEH 220
F+C C + FSR HL H H GEKPF C C + F+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTN 250
KPF+C C + FS HL H+ TH+ K F C C + F K H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 59 FTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVH 110
F C +CMR+F+ HI H EK F+C+ C + F R D + H + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNH 304
P C C + FS L H + H G KPFAC +C + F + + + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQI 279
K FQC+ C + F+ HL H H G P C C + F+ E RH I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 142 IKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFV 195
+KP+ C IC + F++ +L H+ H G F CD CG+ F+R +H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHT-GEKPFACDICGRKFARSDERKRHRDI 53
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 113 VKKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHH 163
+K + C C + + L +H++T H G KP+ C+IC + F + K H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 50
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 85 KLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQTSHRGIKP 144
K F C C++ F R D L H+ + H K + C+ C + + E H H I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH--ILP 58
Query: 145 YVCEICSKAFTQQYNLKHHL 164
+ + + ++ Y+L++ +
Sbjct: 59 ILEDKVEELLSKNYHLENEV 78
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 2 VQVFTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMV 54
++ F C +C + F+R+ L H H + C++C + F+ ++H+ +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 230 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIH 280
F C +C KT+ L H H G P +C EC KCF +SE+NRH ++H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTH 308
P C C K + S L+RH + H G +P +C C K F ++++ HL H
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEI 335
+PF C C K++ + L H H +P +C C K F ++ +HL++
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 224
F C+ CGK + L +H H G +P C C K F + +N HL H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 84 EKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCEECDKYYLSQGELDSHVQT 137
E+ F CNFC K + L H H + +C EC K + Q E++ H++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 114 KKYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+ + C C K Y L H + +H G +P C C K F Q + HL +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 35 CELCYKMFSDKLLYEKHKMVH--RQVFTCEVCMRSFNDRKEFNEHIMKHE 82
C C K + D +H+ H + +C C + F D+ E N H+ H+
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%)
Query: 253 EGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSKVK 312
+G + + C+ C + + + L RH IH K + C C K F H H+ +
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 313 PYNCGICAKSFVQRNTYIKHLEIVHGVITSNSANM 347
Y C C KSF+ H++ VH S + +
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL 112
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 163 HLLLHGDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLY 222
H L DG + C C +++ L +H +H EK + C YC K F + +H
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 223 THSENKCFQCKYCPKTFTLRKHLKAHT 249
H+ + +QC C K+F + + +H
Sbjct: 72 HHTGERRYQCLACGKSFINYQFMSSHI 98
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%)
Query: 192 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNK 251
+ + G + C C +++ L H HS K + C+YC K F L ++ H
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 252 HEGVLPHTCLECSKCFSTKSELNRHAQ 278
H G + CL C K F ++ H +
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIK 99
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 132 DSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQ 191
D H + G Y+C +C +++ +L+ H +H + C C K F + +
Sbjct: 10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-WEKKYPCRYCEKVFPLAEYRTK 68
Query: 192 HSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYT-HSEN 227
H H GE+ ++C C K+F + ++ H+ + HS++
Sbjct: 69 HEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 230 FQCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACT 289
+ C C +++ L+ H N H + C C K F +H H G + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 290 VCNKSFLQKTQLQNHL 305
C KSF+ + +H+
Sbjct: 83 ACGKSFINYQFMSSHI 98
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 56 RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKDVKK 115
R + C VC RS+ H H EK + C +C K F + H H ++
Sbjct: 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERR 78
Query: 116 YNCEECDKYYLSQGELDSHVQTSH 139
Y C C K +++ + SH+++ H
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVH 102
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 5 FTCEVCQQAFTRNADLKVHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVH--RQVFTCE 62
+ C VC++++ L+ H +H + + C C K+F KH++ H + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 63 VCMRSFNDRKEFNEHI 78
C +SF + + + HI
Sbjct: 83 ACGKSFINYQFMSSHI 98
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 178 QCGKAFSRKGHLVQHSFVHGGEKPFKC--SYCPKAFSHKGHLNEHLYTHSENKCFQCKY- 234
CG A+++ L H H GEKPF C C K F+ HL H TH+ K F C
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 235 -CPKTFTLRKHLKAHTNK 251
C FT + ++K H N+
Sbjct: 70 GCDLRFTTKANMKKHFNR 87
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 143 KPYVCEI--CSKAFTQQYNLKHHLLLHGDGNSLFRCDQ--CGKAFSRKGHLVQHSFVHGG 198
K Y+C C A+ + + L+ HL H G F C + C K F+ HL +HS H G
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKH-TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 199 EKPFKCSY--CPKAFSHKGHLNEHL 221
EK F C C F+ K ++ +H
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHF 85
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLE--CSKCFSTKSELNRHAQIHGGVKPFACTV-- 290
C + L+AH +KH G P C E C K F++ L RH+ H G K F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 291 CNKSFLQKTQLQNHL 305
C+ F K ++ H
Sbjct: 71 CDLRFTTKANMKKHF 85
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 262 ECSKCFSTKSELNRHAQIHGGVKPFAC--TVCNKSFLQKTQLQNHLYTHSKVKPYNCGI- 318
+C ++ +L H H G KPF C C K F L H TH+ K + C
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 319 -CAKSFVQRNTYIKHLEIVHGV 339
C F + KH H +
Sbjct: 70 GCDLRFTTKANMKKHFNRFHNI 91
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 277 AQIHGGVKPFACTVCNKSFLQKTQLQNHL--YTHSKVKP--YNCGICAKSFVQRNTYIKH 332
+ H G KP+AC+ C+K+F QK L H Y P + C C K+F +RNT +H
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Query: 333 LEIVHG 338
+ G
Sbjct: 67 ADNCAG 72
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 138 SHRGIKPYVCEICSKAFTQQYNLKHHLLLHGDGN---SLFRCDQCGKAFSRKGHLVQHS 193
+H G KPY C C K F Q+ L H + D N + F C +CGK F+R+ + +H+
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 195 VHGGEKPFKCSYCPKAFSHKGHLNEHLYT-HSEN---KCFQCKYCPKTFTLRKHLKAHTN 250
H GEKP+ CS+C K F K L+ H H N F C C KTFT R + H +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 109 VHKDVKKYNCEECDKYYLSQGELDSHVQTSHRG---IKPYVCEICSKAFTQQYNLKHHL 164
H K Y C CDK + + LD H + H +VC C K FT++ + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 215 GHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKH--EGVLPHT--CLECSKCFSTK 270
G TH+ K + C +C KTF ++ L H ++ +P C +C K F+ +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 271 SELNRHAQ 278
+ + RHA
Sbjct: 61 NTMARHAD 68
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+RCDQCGKAFS+KG L+ H VH G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSEN 227
EKP++C C KAFS KG L H+ H+ +
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH-GDGNS 172
KPY C+ C KAF+Q+ +L H+ +H G G S
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F QK L H+ H+ P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 312 KPYNCGICAKSFVQRNTYIKHLEI 335
KPY C C K+F Q+ + I H+ +
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C +C K FS K L H ++H G P
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTH 224
G+S C CGK F +L H H GEKP+KC +C A + K L HL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 254 GVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHLYTHSK 310
G C C K F + LN H + H G KP+ C C + QKT L+ HL H K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 118 CEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
C C K++ S L+ H++T H G KPY CE C A Q+ +L++HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNKH 252
G +CSYC K F +LN HL TH+ K ++C++C + L+ H +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLEIVH 337
G C+ C K F L HL TH+ KPY C C + Q+ + HLE H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 231 QCKYCPKTFTLRKHLKAHTNKHEGVLPHTCLECSKCFSTKSELNRHAQIH 280
+C YC K F +L H H G P+ C C + K+ L H + H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHK 111
C C + F N H+ H EK + C FC +K L H+ HK
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+RC +CGKAF++K +L QH +H GEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ K+ L +H +IH G KP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++C C KAF+ K +L +H H+ K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C KAF Q+ NL H +H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIH 35
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F QK L H H+ KP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 312 KPYNCGICAKSFVQRNTYIKHLEIVHGVITSNSAN 346
KPY CG C K+F Q+ +H I G S ++
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAFS+ HL+QH VH GEKP
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K FS + L +H ++H G KP
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++C C KAFS HL +H H+ K
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F Q T L H H+ KP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 59 FTCEVCMRSFNDRKEFNEHIMKHEKE--KLFSCNFCLKPFLRKDLLEAHVNSVHK 111
+ C+VC R + F H + K K++ C FC K F RKD + AHV +HK
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 116 YNCEECDKYYLSQGELDSHVQTSH-RGIKPYVCEICSKAFTQQYNLKHHLLL 166
Y C+ C + Y H TSH R +K Y C C K FT++ N+ H+ +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 141 GIKPYVCEICSKAFTQQYNL-KHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQH 192
G Y C++CS+ +T N +H++ H ++ C C K F+RK ++ H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 194 FVHGGEKPFKCSYCPKAFSHKGHLNEHLYT-HSEN-KCFQCKYCPKTFTLRKHLKAHT 249
F GE ++C C + ++H + H T H N K + C +C K FT + ++ AH
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSK--VKPYNCGICAKSFVQRNTYIKHLEIVHGV 339
G + C VC++ + + H T K VK Y C C K F +++ H++I+H +
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 179 CGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTH 224
CGK + + HL H+ H GEKPF CS+ C + F+ L+ H TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTC--LECSKCFSTKSELNRHAQIH 280
C KT+ HLKAHT H G P +C C + F+ EL+RH + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 0.41, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 263 CSKCFSTKSELNRHAQIHGGVKPFACTV--CNKSFLQKTQLQNHLYTH 308
C K + S L H + H G KPF+C+ C + F + +L H TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAF+RK L+ H +H GEKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKP 285
C EC K F+ KS L H +IH G KP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK FSR L QH +H GEKP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 258 HTCLECSKCFSTKSELNRHAQIHGGVKPFA 287
+ C EC K FS S+L++H +IH G KP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 204 CSYCPKAFSHKGHLNEHLYTHSENKCFQCKYCPKTFTLRKHLKAHTNK 251
C C ++F+ KG HL + F CKYCP TF L H NK
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 30 AQLHKCELCYKMFSDKLLYEKH-KMVH-RQVFTCEVCMRSFNDRKEFNEHIMK 80
A+ H C +C + F+ K E+H +++H QVF C+ C +F HI K
Sbjct: 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 176 CDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENKC 229
C CG++F+ KG +H + + F C YCP F L H+ NKC
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI-----NKC 79
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKLFSCNFCLKPFLRKDLLEAHVNSVHKD 112
C VC SF + H+ ++F C +C F L H+N H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS 82
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 258 HTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHL 305
H C C + F++K RH ++ + F C C +F L H+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F++ HLV+H +H GEKP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ S L RH IH G KP
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C K F+ HL H H+ K
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 138 SHRGIKPYVCEICSKAFTQQYNLKHHLLL-HGDGNSLFRCDQCGKAFSRKGHLVQH 192
+H G KPY C IC FTQ +K H+L H + + F C C +RK L H
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 195 VHGGEKPFKCSYCPKAFSHKGHLNEH-LYTHSENKC-FQCKYCPKTFTLRKHLKAHTNK 251
H GEKP++C C F+ G + H L H+EN F C +C + L H K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 81 HEKEKLFSCNFCLKPFLRKDLLEAHVNSVH-KDVKKYNCEECDKYYLSQGELDSHVQTSH 139
H EK + C C F + ++ H+ H ++V K++C CD + +L H++ H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 140 RGIKP 144
P
Sbjct: 70 SYSGP 74
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 307 THSKVKPYNCGICAKSFVQRNTYIKHLEIVHGVITSNSANMNIP 350
THS KPY C IC F Q T H+ H T N A + P
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKH---TENVAKFHCP 49
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C +CGK+++++ HL QH VH GEKP
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPFKC C K+++ + HL +H H+ K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C C KS+ Q+ L H H+ KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAFSRK L+ H H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K FS K +L H + H G KP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 285 PFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
P+ C C K+F +K QL +H TH+ KP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C++CGK FS HL +H +H GE P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHS 225
E PFKC+ C K FSH HL++H H+
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHA 36
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C +CGK F R HL +H +H GEKP
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F S L RH IH G KP
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F C +CGKAF+RK L H +H GEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKP 285
C EC K F+ KS L+ H +IH G KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 175 RCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+C++CGK+F + HL+QH +H GEKP
Sbjct: 14 KCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
PH C EC K F + L +H +IH G KP
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGKAFS+ L +H +H GEKP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K FS S+L RH +IH G KP
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F Q ++L H H+ KP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C KAFS L H H+ K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C KAF+Q L H +H
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIH 35
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGKAFS+ L +H VH GEKP
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K FS S+L RH ++H G KP
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F Q ++L H H+ KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C KAF+Q L H +H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C CGKAF HLVQH VH GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC C KAF HL +H HS +
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C VC K+F + L H HS +P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 168 GDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
G FRCD C K+F ++ L H +H GEKP
Sbjct: 7 GTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.086, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C C+KSF Q++ L +H H+ KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPF+C C K+F + LN H H+ K
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.6 bits (70), Expect = 0.89, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C C K F +S LN H IH G KP
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 59 FTCEVCMRSFNDRKEFNEHIMKHEKEK 85
F C+ C +SF R N H M H EK
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+ C K+F Q+ L H ++H
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIH 35
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++CD CGK FS+ HL H VH GEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 286 FACTVCNKSFLQKTQLQNHLYTHSKVKP 313
+ C VC K F Q + LQ H H+ KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 227 NKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
KC++C C K F+ HL+ H H G P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F++ HL +H +H GEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ S L RH IH G KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C K F+ HL H H+ K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K F Q + L H H+ KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C K FTQ +L H +H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F++ HL +H +H GEKP
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ S L RH IH G KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C K FTQ +L H +H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K F Q + L H H+ KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQ--- 231
+ CGKAF + L H F H + P++C + C K FS L H H+ C +
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 232 CKYCPKTFTL 241
C + KT+TL
Sbjct: 67 CSFVGKTWTL 76
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLE--CSKCFSTKSELNRHAQIHGGV---KPFACT 289
C K F LK H H LP+ C C K FS S L RH ++H G K +C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 290 VCNKSF 295
K++
Sbjct: 69 FVGKTW 74
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 145 YVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAFSRKGHLVQHSFVHGG-- 198
YVC E C KAF + LK H H + C + C K FS L +H VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 199 -EKPFKCSYCPKAFS 212
+K CS+ K ++
Sbjct: 61 CKKDDSCSFVGKTWT 75
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F++ HL H +H GEKP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ S L H +IH G KP
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K F Q + L NH H+ KP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C K F+ HL H H+ K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C K FTQ +L +H +H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 177 DQCGKAFSRKGHLVQHSFVHGGEKPFKCSY--CPKAFSHKGHLNEHLYTHSENKCFQ--- 231
+ CGKAF + L H F H + P++C + C K FS L H H+ C +
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 232 CKYCPKTFTL 241
C + KT+TL
Sbjct: 67 CSFVGKTWTL 76
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 235 CPKTFTLRKHLKAHTNKHEGVLPHTCLE--CSKCFSTKSELNRHAQIHGGV---KPFACT 289
C K F LK H H LP+ C C K FS S L RH ++H G K +C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 290 VCNKSF 295
K++
Sbjct: 69 FVGKTW 74
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 145 YVC--EICSKAFTQQYNLKHHLLLHGDGNSLFRC--DQCGKAFSRKGHLVQHSFVHGG-- 198
YVC E C KAF + LK H H + C + C K FS L +H VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 199 -EKPFKCSYCPKAFS 212
+K CS+ K ++
Sbjct: 61 CKKDDSCSFVGKTWT 75
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
GEKPF CS C KAFS K +L H TH+E K
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 315
G KPF C+ C K+F K+ L H TH++ KP
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSG 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F KS LNRH +IH G KP
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 176 CDQCGKAFSRKGHLVQHSFVHGGEKP 201
C++CGK+F +K HL +H +H GEKP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C KSF+QK+ L H H+ KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+ C+ C K+F K HLN H H+ K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY+C C K+F Q+ +L H +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
+ C++CG + L +H H +P+ C+YC +F KG+L +H+ + + +K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 258 HTCLECSKCFSTKSELNRHAQIHGGVKPFACTVCNKSFLQKTQLQNHL 305
+ C EC S L +H + H V+P+ CT CN SF K L H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 286 FACTVCNKSFLQKTQLQNHLYTHSKVKPYNCGICAKSFVQRNTYIKHLE 334
+ C C + + L+ H+ TH+ V+PY+C C SF + KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 115 KYNCEECDKYYLSQGELDSHVQTSHRGIKPYVCEICSKAFTQQYNLKHHL 164
KY CEEC L H++T H ++PY C C+ +F + NL H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 145 YVCEICSKAFTQQYNLKHHLLLHGDGNSLFRCDQCGKAFSRKGHLVQH 192
Y+CE C + LK H+ H D + C C +F KG+L +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKH 48
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAFS K +L+ H H GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+ CS C KAFS K +L H+ THS K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C+ C K+F K+ L H+ THS KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K FS+KS L H + H G KP
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
G + + C +CGKAF+RK L+ H H GE
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHS 225
GE P++CS C KAF+ K L H TH+
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHS 309
G P+ C+ C K+F +K QL +H TH+
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGG 282
P+ C EC K F+ K +L H + H G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C C KAF++K HL QH H GEKP
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C VC+K+F QK L H TH+ KP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++C C KAF+ K HL +H TH+ K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C++CSKAFTQ+ +L H H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 227 NKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
K ++CK C K FT + HL H H G P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C CSK F+ K+ L +H + H G KP
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 173 LFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
L+ C +CGK+FSR L++H +H GEKP
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+RC +CGKAF+ + +L H +H GEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ +S L H +IH G KP
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C KAFT + NL H +H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
GVKP+ C+ C K+F K+ L H+ TH+ KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.081, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAF K +L+ H H GEKP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 254 GVLPHTCLECSKCFSTKSELNRHAQIHGGVKP 285
GV P+ C EC K F +KS L H + H G KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
G KP+ CS C KAF K +L H+ TH+ K
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 28.1 bits (61), Expect = 9.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 113 VKKYNCEECDKYYLSQGELDSHVQTSHRGIKP 144
VK Y C EC K + S+ L H++T H G KP
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRT-HTGEKP 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C+QCGKAFS + L H +H G+KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C +C K FS +S L H IH G KP
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++C+ C KAFS + L H H+ K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 170 GNSLFRCD--QCGKAFSRKGHLVQHS-FVHGGEKPFKCS--YCPKAFSHKGHLNEHLYTH 224
G+S CD CG+ FS + +L H + H +K F C C K+F+ K HL EH+ H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 225 SENKCFQCKY 234
S+ + + C++
Sbjct: 64 SDTRDYICEF 73
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 38 CYKMFSDKLLYEKHKM---VHRQVFTCE--VCMRSFNDRKEFNEHIMKHEKEKLFSCNF 91
C ++FS++ HK +H++ F+C C +SFN +K EH+ H + + C F
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 207 CPKAFSHKGHLNEHL-YTHSENKCFQCK--YCPKTFTLRKHLKAHTNKHEGVLPHTC 260
C + FS++ +LN H Y H K F C C K+F +KHLK H H + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 263 CSKCFSTKSELNRHAQI-HGGVKPFACT--VCNKSFLQKTQLQNHLYTHSKVKPYNCGIC 319
C + FS + LN H + H K F+C C KSF K L+ H+ HS + Y C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 320 AKS 322
S
Sbjct: 75 GPS 77
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C +CGKAF + HL H +H GEKP
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPFKC C KAF HL HL H+ K
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C C K+F Q L +HL H+ KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+ C KAF Q +L HL +H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C++CGK F++ HL H VH GEKP
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C C K F Q + L +H H+ KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPF+C C K F+ HL+ H H+ K
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
K FQC+ C K FT HL +H H G P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C EC K F+ S L+ H ++H G KP
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ CD CGKAF LV+H +H GEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C C K F +EL RH +IH G KP
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPYVC+ C KAF L H +H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+ C YC KAF L H H+ K
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C++CGKAFS L H +H GEKP
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 255 VLPHTCLECSKCFSTKSELNRHAQIHGGVKP 285
V P+ C EC K FS S L H IH G KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 142 IKPYVCEICSKAFTQQYNLKHHLLLH 167
+KPY+C C KAF+ +L H ++H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIH 35
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
E+PFKC+ C K F + HL HL HS K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
F+C++CGK F R+ HL H +H EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVK 312
+PF C C K F +++ L HL HS+ K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSE 226
EKP+ C+ C KAF HLN+HL H++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSK 310
KP++C VC K+F+ L HL H++
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C +C KAF +L HL +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
G + C +CGKAF RK H + H +H GE
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHS 225
GEKP+ C+ C KAF K H H H+
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHT 34
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHS 309
G KP+ CT C K+F++K+ H H+
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHT 34
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 254 GVLPHTCLECSKCFSTKSELNRHAQIHGG 282
G P+ C EC K F KS H +IH G
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGKAF +L H +H GEKP
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F S L H IH G KP
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C KAF NL H ++H
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIH 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 249 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKP 285
++ G P++C EC K F+ KS+L H +H GVKP
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
G + C++CGKAF+ K L+ H VH G KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
G KP++C C K+F K+QL H H+ VKP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 225 SENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
S K + C C K FT + L H H GV P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F++ HL +H VH G KP
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ S L RH ++H G KP
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C K F+ HL H H+ K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLHGDG 170
KPY C C K FTQ +L H +H G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGG 38
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K F Q + L H H+ KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+CD CGK+F + L +HS VH EKP
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C +C KSF +++L H H+ KP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPFKC C K+F + LN H H+ K
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 57 QVFTCEVCMRSFNDRKEFNEHIMKHEKEK 85
+ F C++C +SF R N H M H EK
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C C K F +S LNRH+ +H KP
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KP+ C+IC K+F + L H ++H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ CD C KAFS L QH VH GEKP
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++C C KAFSH L +H HS K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C VC K+F L H HS KP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C++C KAF+ +L H +H
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVH 35
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 141 GIKPYVCEICSKAFTQQYNLKHHLLLHGD 169
G +P+VC IC AFT + N HL +H D
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSEN 227
G++PF C C AF+ K + HL H++
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C++C KSF +K+QL H H+ KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C C K F+ KS+L+ H QIH G KP
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C CGK+F++K L H +H GEKP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C IC K+FT++ L H +H
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIH 35
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++CS C K+F+ K L+ H H+ K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 175 RCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+C +CG+ F+ K HL QH +H GEKP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 258 HTCLECSKCFSTKSELNRHAQIHGGVKPFA 287
H C EC + F+ KS LN+H +IH G KP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F++ HL H +H G KP
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ S L H +IH GVKP
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K F Q + L NH H+ VKP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHS 225
EKP+KC+ C K F+ HL H H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C K FTQ +L +H +H
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
F C CGK+F KG+LV H +H GEK
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
+KPF+C++C K+F KG+L H H+ K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVK 312
KPF CT C KSF K L H H+ K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 283 VKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
VKP+ C+ C K+F K+QL H +H+ VKP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 255 VLPHTCLECSKCFSTKSELNRHAQIHGGVKP 285
V P+ C +C+K FS KS+L H + H GVKP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNKHEGVLP 257
K + C C KTF+L+ L H H GV P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C QC K FS K L+ H H G KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 113 VKKYNCEECDKYYLSQGELDSHVQTSHRGIKP 144
VK Y C +C K + + +L H Q SH G+KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGKAF + L H H GEKP
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F ++ L H THS KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C KAF + L H THS K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F +S L H H G KP
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F C +CGK+FS L H +H GEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C EC K FS S+L H +IH G KP
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 315
KPF C C KSF +QL H H+ KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSG 42
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C CGKAF+ + +L++H +H GEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
+PY+C +C KAFT + NL H +H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
+P+ CTVC K+F ++ L H H+ KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C C K F+ +S L +H +IH G KP
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 312 KPYNCGICAKSFVQRNTYIKHLEI 335
+PY C +C K+F R+ IKH +I
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKI 34
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 173 LFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
LF+C++C K F++ L H +H GEKP
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKP 285
C EC K F+ S L H +IH G KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP++CS C KAFSH+ L+ H HS K
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C+VC K+F + L H HS KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C CGKAFS + L H +H G+KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C +C KAF+ + +L H +H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C C K FS + L+ H +IH G KP
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C++CGK F++ L H VH GEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C C K F Q +QL +H H+ KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C EC K F+ S+L+ H ++H G KP
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C+EC K FS +S LN H ++H G KP
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C +CGK FSR+ L H +H GEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPFKC C K FS + LN H H+ K
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHS 225
EKP+KCS C KAF HLNEH H+
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C +CGKAF R HL +H +H G +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F + LN H +IH G +P
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C+ C K+F + T L H H+ +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F QK+ L H TH+ KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C++CGK FS+K L H H GEKP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K FS KS L+ H + H G KP
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+ C+ C K FS K L+ H TH+ K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F+ +QLQ H H+ KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C++CGKAF L +H +H GEKP
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F S+L H +IH G KP
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+ C C KAF H L EH H+ K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 114 KKYNCEECDKYYLSQGELDSHVQTSHRGIKP 144
K YNCEEC K ++ +L H Q H G KP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEH-QRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY CE C KAF L+ H +H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIH 35
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAF +K L H +H GEKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKP 285
C EC K F KS L+ H +IH G KP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 286 FACTVCNKSFLQKTQLQNHLYTHSKVKP 313
+ C+ C K+F+QK+ L H H KP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F C +C KAF+ K +L+ H H GEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPF+CS C KAF+ K +L H TH+ K
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C EC K F+TKS L H + H G KP
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C+ C K+F K+ L H TH+ KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 141 GIKPYVCEICSKAFTQQYNLKHHLLLH 167
G KPYVC+ C KAFTQ L H +H
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F C +CGK F+ K +L+ H +H GE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C EC K F+ K+ L H +IH G +P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
G ++ C +CGK+F +KG L H +H G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F +L +H +H GEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F S L+RH +IH G KP
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC+ C K F H +L+ H H+ K
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P C++C K FS LN+H +IH G KP
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F C CGKAFS L QH +H GEKP
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKPF C C KAFS LN+H H+ K
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGEK 200
G + C++CGK FS K +L+ H +H GEK
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 249 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVK 284
++ G P+ C EC K FS+KS L H +IH G K
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
GEKP+ C+ C K FS K +L H H+ K
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C+ C KSF +L H TH++ KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C +CGK+FS L QH H EKP
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C K+F+ Y L H + H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH 35
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
KP++CS C K+FS L +H TH+ K
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH-GDGNS 172
KPY CE C F Q +L+ H+L+H G G S
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C F+Q L+ H+ H+ P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C+ C KSF++K+QL H H+ P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C +C K F KS+L+ H +IH G P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C CGK+F +K L H +H GE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
G ++C +CGK+FS++G L H +H G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 141 GIKPYVCEICSKAFTQQYNLKHHLLLH-GDGNS 172
G KPY C+ C K+F+Q+ +L H LH G G S
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGPS 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 225 SENKCFQCKYCPKTFTLRKHLKAHTNKHEGVLPHT 259
S K +QCK C K+F+ R L H H G P +
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 198 GEKPFKCSYCPKAFSHKGHLN--EHLYTHS 225
GEKP++C C K+FS +G L E L+T S
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 249 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKP 285
++ G P+ C EC K FS + L H ++H G P
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
G KP+ C C KSF Q+ L H H+ P
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
PH C EC K FS S+L H +IH G P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 176 CDQCGKAFSRKGHLVQHSFVHGGEKP 201
C +CGK+FS L+ H +H GE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHS 309
KP+ C C K F+Q +QL NH+ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPYVCE C K F Q L +H+ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHS 225
GEKP++C+ C KAF K L H TH+
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 170 GNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
G + C CGKAF K L+ H H GE
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHS 309
G KP+ CT C K+F K+QL H TH+
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 254 GVLPHTCLECSKCFSTKSELNRHAQIHGG 282
G P+ C +C K F KS+L H + H G
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGE 199
+ C +CGKAF R L+ H H GE
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHS 309
KP+ C+ C K+F++ +QL H THS
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHS 36
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHS 225
EKP++CS C KAF L H THS
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C+EC K F TKS L H + H G KP
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAF K L+ H H GEKP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 175 RCDQCGKAFSRKGHLVQHSFVHGGEKP 201
RC CGK F + + +QH +H GEKP
Sbjct: 14 RCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH-GDGNS 172
KPY CEIC F LK HL +H G G S
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F+ +S L +H +IH KP
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY+C C KAFT + NL H +H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGKAF+ + +L++H +H +KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C C K+F ++ L H H+K KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
G L C+ CGKAFS K L+ H +H GE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGE 199
+ C++CGKAF K +L+ H+ H GE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
+ C +CGK+F L++H VH GEKP
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C EC K F S L +H ++H G KP
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
++C +CGKAF + +L H +H GEK
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVK 284
P+ C EC K F T+S L H IH G K
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY C C KAF + NL H ++H
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KC C KAF + +L H H+ K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK ++ K +L H VH GE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY CE C K + ++NL H +H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVK 284
P C EC K F+T L RH +IH G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+C +CGK F+ G+L +H +H GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 201 PFKCSYCPKAFSHKGHLNEHLYTHSENK 228
P KC C K F+ G+L HL HS K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 144 PYVCEICSKAFTQQYNLKHHLLLH 167
P C C K FT NLK HL +H
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIH 25
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C++CGK F + L H VH GEKP
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 228 KCFQCKYCPKTFTLRKHLKAHTNKHEG 254
K FQCK C + F+ HLK HT H G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
KPF+C C + FS HL H TH+ K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
F+C C + FSR HL H+ H GEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHS 225
E PFKCS C + F+ + +L +H TH+
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 29 IAQLHKCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFN 69
+A L KC C + D++L K H FTC VC R +
Sbjct: 12 VATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLD 52
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 61 CEVCMRSFNDRKEFNEHIMKHEKEKL---FSCNFCLKPFLRKDLLEAHVNSVHKDV 113
CE+C + + N H KH + F C FC K F + D + AH + H +
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP+KCS C KAF+ K L+ H +H+ +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
++C CGKAF+RK L H H GE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
++C+ CGK ++R+ +L H VH GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 143 KPYVCEICSKAFTQQYNLKHHLLLH 167
KPY CE C K + ++ NL H +H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGE 199
+ C +CGK FSRK LV H H G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYN 315
G KP C C K+F Q + L H HS KP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 249 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGVKPFA 287
++ G P C EC K F S L++H +IH G KP
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
G C++CGK F + L +H +H GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 174 FRCDQCGKAFSRKGHLVQH-SFVHGGEKPFKC 204
+ C CGK FSR HL H VH E+P KC
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 85 KLFSCNFCLKPFLRKDLLEAHVNSVHKDVKKYNCE 119
K + C C K F R D L H+ VH + + C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVKP 285
P+ C+EC K F S +H ++H G +P
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C +CGKAF QH +H G++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 169 DGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
G + C++CGKAF K L+ H +H GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 137 TSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+ G KPYVC C KAF LK L++H
Sbjct: 3 SGSSGQKPYVCNECGKAF----GLKSQLIIH 29
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 249 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGG 282
++ G P+ C EC K F KS+L H +IH G
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 249 TNKHEGVLPHTCLECSKCFSTKSELNRHAQIHGGV 283
++ G P+ C +C K F+ KS+L H IH GV
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 137 TSHRGIKPYVCEICSKAFTQQYNLKHHLLLH 167
+ G KPYVC C KAFT + L H +H
Sbjct: 3 SGSSGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 282 GVKPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 317
G KP+ C+ C K+F K+QL H H+ V + G
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSGPSSG 42
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 198 GEKPFKCSYCPKAFSHKGHLNEHLYTHS 225
GEKP+ CS C KAF+ K L H H+
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKPYNCG 317
K AC +C K F L H +HS KPY+ G
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 56 RQVFTCEVCMRSFNDRKEFNEHIMKHEKEKLFSCN 90
R+ CE+C + F D N H + H EK +S
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 176 CDQCGKAFSRKGHLVQHSFVHGGEKPF 202
C+ CGK F HL +H H GEKP+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KPF C C K F +Q +H +HS KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
F+C++CGK F H H GEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 284 KPFACTV--CNKSFLQKTQLQNHLYTHSKVKP 313
KPFACT C F + +L H +HS VKP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 144 PYVCEICSKAFTQQYNLKHHLLLHGD 169
+VCE+C++AF +Q LK H H +
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTN 27
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGGVK 284
P+ C+ C + F+ L RH +IH G K
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 144 PYVCEICSKAFTQQYNLKHHLLLHGD 169
+VCE+C++AF +Q +LK H H +
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTN 27
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
KP++C YC ++FS HL TH +K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 311 VKPYNCGICAKSFVQRNTYIKHLEI 335
+KPY C C +SF + ++HLE
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLET 25
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 283 VKPFACTVCNKSFLQKTQLQNHLYTHSKVK 312
+KP+ C C +SF T HL TH K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
EKP KC+ C KAF K L H TH ++K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVH 196
+ C++CGKAF+R HL +H +H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
K F C CPK F HL++H+ TH K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
+KP++C C K F GHLN+H H+ +
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEK 200
+ C +C K F + GHL QH VH GE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 283 VKPFACTVCNKSFLQKTQLQNHLYTHS 309
++P++C+VC K F K Q++ H H+
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 174 FRCDQCGKAFSRKGHLVQH-SFVHGGEKP 201
+ C +CGKAF + L++H + H GEKP
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 284 KPFACTVCNKSFLQKTQLQNHL-YTHSKVKP 313
KP+ C C K+F+Q T L H Y H+ KP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 312 KPYNCGICAKSFVQRNTYIKHLEIVH 337
KPY C C K+F+Q + I+H H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 260 CLECSKCFSTKSELNRHAQIHGGVKP 285
C EC CFS S L H +H G KP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 144 PYVCEICSKAFTQQYNLKHHLLLHGD 169
+VCE+C++AF +Q LK H H +
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTN 27
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 225 SENKCFQCKYCPKTF----TLRKHLKAHTNK 251
S K F C+YC K F +L+ HL+ HTN+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTHS 225
EKP++C+ C KAF+ K +L H TH+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 257 PHTCLECSKCFSTKSELNRHAQIHGG 282
P+ C EC K F+TKS L H + H G
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 22 VHSMVHKIAQLHKCELCYKMFSDKLLYEKHKMVHRQVFTCEVCMRSFNDRKEFNEHIMKH 81
V +++H L + Y++ + K + + F C +C+ F+ +HI
Sbjct: 47 VKTLIHNPQLLDESSYLYRLLASKAISQ---------FVCPLCLMPFSSSVSLKQHIRYT 97
Query: 82 EKEKLFSCNFCLKPFLRKDLLEAHV 106
E K+ C C K F D HV
Sbjct: 98 EHTKV--CPVCKKEFTSTDSALDHV 120
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 283 VKPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
V P+ C+ C KSF K +L H H++ KP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 174 FRCDQCGKAFSRKGHLVQHSFVHGGEKP 201
++C QC K+FS K L+ H +H EKP
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 284 KPFACTVCNKSFLQKTQLQNHLYTHSKVKP 313
KP+ C VC+KSF + L H H+ KP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 199 EKPFKCSYCPKAFSHKGHLNEHLYTH 224
EKPF CS CP+ + +HL TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 313 PYNCGICAKSFVQRNTYIKH 332
PY CG C KSF QR + H
Sbjct: 11 PYLCGQCGKSFTQRGSLAVH 30
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 200 KPFKCSYCPKAFSHKGHLNEHLYTHSENK 228
KPFKCS C A K +L H+ HS K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 10.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 168 GDGNSLFRCDQCGKAFSRKGHLVQHSFVHGGE 199
G + C +CGK F L++H +H GE
Sbjct: 7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.135 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,906,196
Number of Sequences: 62578
Number of extensions: 452337
Number of successful extensions: 3502
Number of sequences better than 100.0: 202
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 1726
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)