BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11676
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA-QEL 89
LVVKLG++V+T L + +V Q A+ H G ++VTSGA+A G++ L EL
Sbjct: 7 LVVKLGTSVLTGGSRR-LNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL 65
Query: 90 LMSLSMRETLSPKDHSR 106
+++ ++ L+ SR
Sbjct: 66 PATIASKQLLAAVGQSR 82
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA-QEL 89
LVVKLG++V+T L + +V Q A+ H G ++VTSGA+A G++ L EL
Sbjct: 7 LVVKLGTSVLTGGSRR-LNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL 65
Query: 90 LMSLSMRETLSPKDHSR 106
+++ ++ L+ SR
Sbjct: 66 PATIASKQLLAAVGQSR 82
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From
Campylobacter Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From
Campylobacter Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From
Campylobacter Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From
Campylobacter Jejuni
Length = 251
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85
+R+VVK+GS VI+ E+ L+ RL ++V +A+ E E I+VTS A++ G KL
Sbjct: 2 KRIVVKVGSHVISEENT--LSFERLKNLVAFLAKLX-EKYEVILVTSAAISAGHTKL 55
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77
KY +R+++KL + E G+ + + +I +++AE H+ G + +V G
Sbjct: 6 KY-QRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGG 56
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 68 RECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPKDH 104
+ ++ +G A GK LAQ L +L R L P DH
Sbjct: 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41
>pdb|3D40|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With
Diphosphate
pdb|3D41|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With Mgamppnp
And Fosfomycin
pdb|3QUN|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With Mgatp
pdb|3QUO|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With Atp And
Fosfomycin
pdb|3QUR|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With Mgadp And
Fosfomycin Monophosphate
pdb|3QVF|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With Mgadp And
Fosfomycin Vanadate
pdb|3QVH|A Chain A, Crystal Structure Of Fosfomycin Resistance Kinase Foma
From Streptomyces Wedmorensis Complexed With Adp
Length = 286
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 22 RGQLKYARRLVVKLGSAVITREDEHGL----ALGRLASIVEQVAECHLEGRECIMVTSGA 77
RG L +K+G ++ +R+DE G A+ R A ++AE + R +++ SG
Sbjct: 17 RGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETY---RGRMVLISGG 73
Query: 78 VAFG 81
AFG
Sbjct: 74 GAFG 77
>pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila
Lsv54
Length = 377
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 48 LALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPK 102
+ +G A + EQ+ EG C+ + GA+ F K E + +RE+ SP+
Sbjct: 158 IWMGEAAFMQEQIEAKLAEGYGCLKLKIGAIDFDK-----ECALLAGIRESFSPQ 207
>pdb|1SVD|A Chain A, The Structure Of Halothiobacillus Neapolitanus Rubisco
Length = 473
Score = 25.4 bits (54), Expect = 9.7, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 21 DRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAF 80
D G L + R + AVI R HG+ L I+ HL T V
Sbjct: 279 DNGVLLHIHRAM----HAVIDRNPNHGIHFRVLTKILRLSGGDHLH-------TGTVVGK 327
Query: 81 GKQKLAQELLMSLSMRETLSPKDHSRSNHFDSE 113
+ A L +RE+ P+D SR FD +
Sbjct: 328 LEGDRASTLGWIDLLRESFIPEDRSRGIFFDQD 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,092,759
Number of Sequences: 62578
Number of extensions: 96012
Number of successful extensions: 218
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)