Query psy11676
Match_columns 131
No_of_seqs 110 out of 1024
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 16:01:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0263 ProB Glutamate 5-kinas 100.0 8.5E-31 1.8E-35 223.8 8.6 103 25-128 3-128 (369)
2 KOG1154|consensus 99.9 7.8E-28 1.7E-32 198.3 8.4 108 21-128 2-143 (285)
3 cd04256 AAK_P5CS_ProBA AAK_P5C 99.9 3.4E-25 7.4E-30 182.4 9.1 107 22-128 2-148 (284)
4 PTZ00489 glutamate 5-kinase; P 99.9 2.2E-22 4.7E-27 164.8 7.3 103 22-128 2-126 (264)
5 PRK13402 gamma-glutamyl kinase 99.9 9.6E-22 2.1E-26 167.6 7.3 101 26-128 3-126 (368)
6 PRK12314 gamma-glutamyl kinase 99.9 1.4E-21 3.1E-26 159.0 7.8 105 23-128 4-131 (266)
7 TIGR01092 P5CS delta l-pyrroli 99.8 4.4E-21 9.6E-26 174.2 8.3 105 24-129 3-140 (715)
8 PLN02418 delta-1-pyrroline-5-c 99.8 3.1E-20 6.8E-25 169.0 8.9 110 18-128 5-147 (718)
9 PRK05429 gamma-glutamyl kinase 99.8 1.8E-19 3.8E-24 153.0 7.9 105 22-127 2-129 (372)
10 TIGR01027 proB glutamate 5-kin 99.8 2.2E-19 4.7E-24 152.2 8.0 99 29-128 1-122 (363)
11 cd04242 AAK_G5K_ProB AAK_G5K_P 99.6 2.4E-15 5.1E-20 120.6 7.5 98 30-128 1-121 (251)
12 TIGR00746 arcC carbamate kinas 99.4 2.7E-13 5.8E-18 113.9 6.9 88 29-116 1-128 (310)
13 PRK12353 putative amino acid k 99.4 1.5E-12 3.3E-17 108.9 7.2 59 28-86 2-61 (314)
14 PRK14558 pyrH uridylate kinase 99.3 5.7E-12 1.2E-16 99.9 6.7 77 29-105 1-90 (231)
15 PRK00358 pyrH uridylate kinase 99.0 1.4E-09 3.1E-14 85.7 7.2 56 29-84 1-57 (231)
16 cd04239 AAK_UMPK-like AAK_UMPK 98.9 2.1E-09 4.5E-14 85.0 6.7 55 30-85 1-56 (229)
17 cd04234 AAK_AK AAK_AK: Amino A 98.8 5.2E-09 1.1E-13 82.9 4.6 90 30-128 1-110 (227)
18 cd04246 AAK_AK-DapG-like AAK_A 98.6 6.7E-08 1.4E-12 76.7 5.7 49 31-86 2-50 (239)
19 TIGR02075 pyrH_bact uridylate 98.6 1.2E-07 2.6E-12 75.5 6.9 54 29-82 2-56 (233)
20 cd04261 AAK_AKii-LysC-BS AAK_A 98.6 6.5E-08 1.4E-12 76.9 4.0 49 31-86 2-50 (239)
21 cd04241 AAK_FomA-like AAK_FomA 98.5 1.7E-07 3.6E-12 74.7 4.0 53 30-85 1-54 (252)
22 cd04255 AAK_UMPK-MosAB AAK_UMP 98.3 7.2E-07 1.6E-11 73.2 5.2 45 30-80 32-76 (262)
23 TIGR02076 pyrH_arch uridylate 98.3 1.2E-06 2.7E-11 68.8 5.6 49 31-85 1-49 (221)
24 PRK06635 aspartate kinase; Rev 98.3 6.7E-07 1.5E-11 75.7 4.0 52 28-86 1-52 (404)
25 PRK14557 pyrH uridylate kinase 98.1 6.6E-06 1.4E-10 67.1 6.4 51 26-76 2-52 (247)
26 PRK14556 pyrH uridylate kinase 98.1 6.2E-06 1.3E-10 68.0 6.3 64 18-81 5-69 (249)
27 cd04254 AAK_UMPK-PyrH-Ec UMP k 98.1 9.1E-06 2E-10 64.6 6.2 48 29-76 1-48 (231)
28 PRK08841 aspartate kinase; Val 98.0 1.2E-05 2.5E-10 69.4 6.4 51 29-86 2-52 (392)
29 PF00696 AA_kinase: Amino acid 98.0 8.5E-06 1.8E-10 63.4 4.7 47 29-81 1-47 (242)
30 TIGR00656 asp_kin_monofn aspar 97.9 8.4E-06 1.8E-10 69.0 3.5 49 30-85 2-50 (401)
31 PRK08210 aspartate kinase I; R 97.9 9.8E-06 2.1E-10 69.0 3.6 47 28-81 1-47 (403)
32 PRK00942 acetylglutamate kinas 97.7 7.4E-05 1.6E-09 60.9 6.1 52 28-86 23-76 (283)
33 cd04253 AAK_UMPK-PyrH-Pf AAK_U 97.7 6.3E-05 1.4E-09 59.3 5.3 43 30-77 1-43 (221)
34 cd04260 AAK_AKi-DapG-BS AAK_AK 97.6 5E-05 1.1E-09 60.9 3.0 42 31-79 2-43 (244)
35 TIGR00761 argB acetylglutamate 97.6 9E-05 1.9E-09 58.5 4.3 39 30-77 1-39 (231)
36 COG0528 PyrH Uridylate kinase 97.6 0.00018 3.8E-09 59.6 5.9 57 27-83 4-61 (238)
37 cd02115 AAK Amino Acid Kinases 97.5 0.00012 2.7E-09 57.0 3.8 44 32-82 1-44 (248)
38 PRK07431 aspartate kinase; Pro 96.9 0.0012 2.5E-08 59.1 4.4 40 29-75 2-41 (587)
39 cd04250 AAK_NAGK-C AAK_NAGK-C: 96.7 0.0033 7.1E-08 51.3 5.0 42 29-77 15-56 (279)
40 cd04235 AAK_CK AAK_CK: Carbama 96.6 0.0042 9.1E-08 52.8 5.6 53 30-82 1-56 (308)
41 cd04238 AAK_NAGK-like AAK_NAGK 96.6 0.0033 7.2E-08 50.4 4.5 47 31-85 1-47 (256)
42 PRK12352 putative carbamate ki 96.5 0.0056 1.2E-07 52.0 5.8 55 29-84 3-61 (316)
43 PRK12454 carbamate kinase-like 96.4 0.0078 1.7E-07 51.4 5.9 54 29-82 3-59 (313)
44 cd04237 AAK_NAGS-ABP AAK_NAGS- 96.4 0.0054 1.2E-07 50.5 4.7 46 28-81 18-63 (280)
45 PLN02512 acetylglutamate kinas 96.3 0.0074 1.6E-07 50.5 5.1 42 28-76 47-88 (309)
46 PRK05279 N-acetylglutamate syn 96.2 0.008 1.7E-07 51.8 5.1 46 28-81 25-70 (441)
47 CHL00202 argB acetylglutamate 96.2 0.0083 1.8E-07 49.5 4.9 42 28-76 23-64 (284)
48 cd04236 AAK_NAGS-Urea AAK_NAGS 96.1 0.0085 1.8E-07 49.9 4.6 43 27-76 34-76 (271)
49 TIGR01890 N-Ac-Glu-synth amino 95.6 0.018 4E-07 49.6 4.7 42 28-77 17-58 (429)
50 PRK12686 carbamate kinase; Rev 95.5 0.025 5.5E-07 48.2 5.2 58 28-85 2-60 (312)
51 PRK12354 carbamate kinase; Rev 95.2 0.042 9.1E-07 46.9 5.5 51 29-81 1-55 (307)
52 COG0527 LysC Aspartokinases [A 94.9 0.035 7.6E-07 49.2 4.4 42 29-77 2-43 (447)
53 cd04252 AAK_NAGK-fArgBP AAK_NA 94.9 0.037 7.9E-07 44.7 4.0 36 32-76 2-37 (248)
54 PRK04531 acetylglutamate kinas 94.5 0.056 1.2E-06 47.2 4.6 40 28-76 36-75 (398)
55 PLN02825 amino-acid N-acetyltr 94.4 0.07 1.5E-06 48.2 5.1 42 27-76 16-57 (515)
56 PRK14058 acetylglutamate/acety 94.3 0.059 1.3E-06 43.9 4.0 45 30-85 1-45 (268)
57 COG0548 ArgB Acetylglutamate k 94.1 0.11 2.4E-06 43.6 5.3 42 28-76 2-43 (265)
58 cd04249 AAK_NAGK-NC AAK_NAGK-N 93.7 0.099 2.2E-06 41.9 4.2 39 31-76 1-40 (252)
59 cd04244 AAK_AK-LysC-like AAK_A 92.6 0.15 3.3E-06 42.6 3.8 39 30-76 1-39 (298)
60 TIGR00657 asp_kinases aspartat 91.9 0.22 4.7E-06 43.1 4.1 41 30-77 2-42 (441)
61 cd04251 AAK_NAGK-UC AAK_NAGK-U 90.0 0.35 7.6E-06 39.2 3.4 41 31-85 1-41 (257)
62 PRK06291 aspartate kinase; Pro 87.9 0.74 1.6E-05 40.5 4.2 40 30-76 2-41 (465)
63 cd04259 AAK_AK-DapDC AAK_AK-Da 86.5 0.96 2.1E-05 37.9 4.0 39 31-76 2-40 (295)
64 COG1608 Predicted archaeal kin 85.3 1.1 2.4E-05 37.7 3.7 50 31-83 3-53 (252)
65 cd04257 AAK_AK-HSDH AAK_AK-HSD 83.5 1.5 3.2E-05 36.8 3.7 38 31-76 2-39 (294)
66 PRK08961 bifunctional aspartat 83.2 1.5 3.2E-05 41.6 4.0 42 28-76 7-48 (861)
67 COG0549 ArcC Carbamate kinase 81.3 2.7 5.9E-05 36.3 4.6 45 29-74 1-49 (312)
68 cd04240 AAK_UC AAK_UC: Unchara 80.5 1.9 4.1E-05 34.0 3.1 35 32-78 1-35 (203)
69 cd04243 AAK_AK-HSDH-like AAK_A 79.8 2.2 4.8E-05 35.7 3.5 37 31-76 2-38 (293)
70 TIGR02078 AspKin_pair Pyrococc 77.7 3.1 6.6E-05 35.7 3.8 36 31-76 2-37 (327)
71 COG0560 SerB Phosphoserine pho 77.4 4.4 9.5E-05 32.2 4.4 31 48-78 63-104 (212)
72 PRK09411 carbamate kinase; Rev 74.9 7.8 0.00017 33.1 5.5 52 29-82 2-57 (297)
73 PRK08373 aspartate kinase; Val 73.8 5.7 0.00012 34.2 4.5 38 29-76 4-41 (341)
74 PRK09084 aspartate kinase III; 71.7 4.4 9.5E-05 35.7 3.4 36 31-76 2-37 (448)
75 cd04258 AAK_AKiii-LysC-EC AAK_ 70.2 4.5 9.8E-05 34.0 3.0 36 31-76 2-37 (292)
76 TIGR01491 HAD-SF-IB-PSPlk HAD- 67.9 6 0.00013 29.1 2.9 23 55-77 84-106 (201)
77 PRK09466 metL bifunctional asp 67.7 6.8 0.00015 37.4 3.9 41 27-75 9-49 (810)
78 PHA03398 viral phosphatase sup 66.8 13 0.00027 32.1 5.0 50 26-78 126-175 (303)
79 cd01427 HAD_like Haloacid deha 66.8 6.9 0.00015 25.8 2.8 25 53-77 26-50 (139)
80 TIGR01689 EcbF-BcbF capsule bi 65.7 15 0.00034 27.3 4.8 48 29-77 2-50 (126)
81 PRK10834 vancomycin high tempe 64.9 56 0.0012 27.1 8.4 94 23-126 40-136 (239)
82 cd04245 AAK_AKiii-YclM-BS AAK_ 63.4 9.8 0.00021 31.9 3.7 36 31-76 2-37 (288)
83 PLN03034 phosphoglycerate kina 62.7 23 0.00051 32.3 6.2 50 26-75 90-139 (481)
84 PF12710 HAD: haloacid dehalog 62.4 7.7 0.00017 28.2 2.6 20 58-77 96-115 (192)
85 cd01821 Rhamnogalacturan_acety 61.2 41 0.00089 25.0 6.4 51 27-77 65-117 (198)
86 PLN02282 phosphoglycerate kina 59.8 28 0.00061 30.9 6.1 50 26-75 15-64 (401)
87 TIGR01166 cbiO cobalt transpor 59.4 22 0.00048 26.5 4.7 34 41-74 151-184 (190)
88 PF03033 Glyco_transf_28: Glyc 58.5 25 0.00054 24.4 4.6 31 50-80 9-39 (139)
89 cd04247 AAK_AK-Hom3 AAK_AK-Hom 57.1 11 0.00025 31.9 3.1 37 31-76 3-39 (306)
90 TIGR01681 HAD-SF-IIIC HAD-supe 56.8 18 0.0004 25.9 3.7 34 52-85 30-64 (128)
91 COG0419 SbcC ATPase involved i 56.5 19 0.00041 34.3 4.7 36 40-75 846-881 (908)
92 TIGR01691 enolase-ppase 2,3-di 56.3 13 0.00029 29.7 3.2 27 54-80 98-124 (220)
93 PF05141 DIT1_PvcA: Pyoverdine 55.9 11 0.00023 31.9 2.7 32 47-78 39-70 (278)
94 TIGR00338 serB phosphoserine p 55.4 15 0.00033 27.7 3.2 25 54-78 88-112 (219)
95 cd03266 ABC_NatA_sodium_export 55.0 30 0.00065 26.3 4.8 36 41-76 160-195 (218)
96 cd03238 ABC_UvrA The excision 54.8 27 0.0006 26.8 4.6 37 40-76 112-148 (176)
97 PF05152 DUF705: Protein of un 54.7 26 0.00056 30.3 4.8 50 26-78 120-169 (297)
98 TIGR00960 3a0501s02 Type II (G 54.6 29 0.00064 26.4 4.7 36 41-76 162-197 (216)
99 TIGR02324 CP_lyasePhnL phospho 54.5 28 0.00061 26.6 4.7 36 41-76 173-208 (224)
100 cd03235 ABC_Metallic_Cations A 54.5 29 0.00062 26.4 4.7 36 41-76 156-191 (213)
101 PF00162 PGK: Phosphoglycerate 54.2 18 0.00039 31.9 3.9 49 27-76 8-56 (384)
102 cd03230 ABC_DR_subfamily_A Thi 54.2 33 0.00072 25.4 4.9 36 40-75 118-153 (173)
103 PRK13538 cytochrome c biogenes 53.8 30 0.00066 26.2 4.7 35 41-75 153-187 (204)
104 PRK09552 mtnX 2-hydroxy-3-keto 53.7 14 0.00031 28.4 2.9 24 55-78 78-101 (219)
105 PF08645 PNK3P: Polynucleotide 53.6 13 0.00029 28.1 2.6 27 49-75 26-53 (159)
106 TIGR01978 sufC FeS assembly AT 53.2 30 0.00065 26.7 4.6 35 41-75 168-202 (243)
107 PLN02551 aspartokinase 52.9 18 0.00039 32.8 3.8 41 26-75 49-89 (521)
108 TIGR01189 ccmA heme ABC export 52.4 33 0.00072 25.8 4.7 37 41-77 151-187 (198)
109 PF01975 SurE: Survival protei 52.3 10 0.00022 30.0 1.9 32 39-75 4-35 (196)
110 PRK00073 pgk phosphoglycerate 52.3 46 0.001 29.5 6.1 50 26-76 9-58 (389)
111 cd03240 ABC_Rad50 The catalyti 52.2 29 0.00064 26.8 4.5 37 40-76 144-182 (204)
112 cd03225 ABC_cobalt_CbiO_domain 52.2 33 0.00072 25.9 4.7 35 41-75 158-192 (211)
113 TIGR01684 viral_ppase viral ph 52.0 32 0.0007 29.6 5.0 59 25-86 123-181 (301)
114 PRK13931 stationary phase surv 51.7 17 0.00038 30.2 3.3 34 39-74 4-37 (261)
115 cd03292 ABC_FtsE_transporter F 51.7 35 0.00075 25.8 4.7 36 41-76 160-195 (214)
116 cd03262 ABC_HisP_GlnQ_permease 51.4 36 0.00079 25.7 4.8 35 42-76 160-194 (213)
117 cd03226 ABC_cobalt_CbiO_domain 51.4 36 0.00078 25.7 4.8 37 40-76 149-185 (205)
118 cd03265 ABC_DrrA DrrA is the A 51.1 35 0.00075 26.1 4.7 36 41-76 155-191 (220)
119 PRK05925 aspartate kinase; Pro 50.9 22 0.00048 31.5 4.0 37 29-76 2-38 (440)
120 cd03216 ABC_Carb_Monos_I This 50.9 38 0.00082 25.0 4.7 36 40-75 105-140 (163)
121 PRK13540 cytochrome c biogenes 50.8 37 0.0008 25.7 4.7 34 42-75 152-185 (200)
122 PRK13651 cobalt transporter AT 50.7 33 0.00071 28.4 4.7 37 40-76 188-224 (305)
123 PRK13962 bifunctional phosphog 50.6 46 0.00099 31.4 6.1 49 26-75 11-60 (645)
124 TIGR01656 Histidinol-ppas hist 50.5 20 0.00043 26.0 3.1 25 53-77 29-53 (147)
125 TIGR03740 galliderm_ABC gallid 50.4 38 0.00083 25.9 4.8 36 41-76 148-183 (223)
126 cd03269 ABC_putative_ATPase Th 50.2 40 0.00088 25.5 4.9 35 41-75 152-186 (210)
127 TIGR01488 HAD-SF-IB Haloacid D 50.0 22 0.00048 25.6 3.2 23 55-77 77-99 (177)
128 COG0396 sufC Cysteine desulfur 49.6 30 0.00065 29.2 4.3 36 40-76 168-203 (251)
129 cd03270 ABC_UvrA_I The excisio 49.5 37 0.00081 26.6 4.7 37 40-76 162-198 (226)
130 TIGR01490 HAD-SF-IB-hyp1 HAD-s 49.5 24 0.00052 26.2 3.5 23 55-77 91-113 (202)
131 cd03246 ABCC_Protease_Secretio 49.4 39 0.00084 25.0 4.6 37 40-76 119-155 (173)
132 cd03268 ABC_BcrA_bacitracin_re 49.4 42 0.0009 25.4 4.8 36 40-75 149-184 (208)
133 cd03219 ABC_Mj1267_LivG_branch 49.3 40 0.00087 25.9 4.8 35 41-75 167-201 (236)
134 TIGR01544 HAD-SF-IE haloacid d 49.3 31 0.00068 29.0 4.5 32 47-78 105-148 (277)
135 COG3769 Predicted hydrolase (H 49.1 16 0.00035 31.0 2.7 24 57-80 29-52 (274)
136 TIGR02673 FtsE cell division A 49.0 40 0.00087 25.5 4.7 35 42-76 162-196 (214)
137 PRK09034 aspartate kinase; Rev 48.9 21 0.00046 31.4 3.5 36 31-76 2-37 (454)
138 TIGR01509 HAD-SF-IA-v3 haloaci 48.7 20 0.00043 25.8 2.8 27 54-80 88-114 (183)
139 cd01822 Lysophospholipase_L1_l 48.6 77 0.0017 22.6 5.9 46 27-76 64-110 (177)
140 PRK09580 sufC cysteine desulfu 48.4 39 0.00085 26.2 4.6 35 41-75 169-203 (248)
141 TIGR00213 GmhB_yaeD D,D-heptos 48.2 22 0.00048 26.5 3.1 25 53-77 28-52 (176)
142 PRK13539 cytochrome c biogenes 48.1 43 0.00092 25.6 4.7 35 42-76 152-186 (207)
143 TIGR01664 DNA-3'-Pase DNA 3'-p 47.8 19 0.00042 27.2 2.8 24 54-77 45-68 (166)
144 TIGR01549 HAD-SF-IA-v1 haloaci 47.6 24 0.00052 25.0 3.1 27 53-79 66-92 (154)
145 CHL00131 ycf16 sulfate ABC tra 47.2 43 0.00093 26.1 4.7 34 42-75 176-209 (252)
146 PRK09436 thrA bifunctional asp 46.9 24 0.00052 33.6 3.8 38 31-75 2-39 (819)
147 cd01838 Isoamyl_acetate_hydrol 46.9 90 0.002 22.5 6.1 51 27-78 63-118 (199)
148 cd03231 ABC_CcmA_heme_exporter 46.7 47 0.001 25.2 4.8 34 42-75 150-183 (201)
149 TIGR03333 salvage_mtnX 2-hydro 46.5 23 0.0005 27.2 3.1 25 54-78 73-97 (214)
150 cd03275 ABC_SMC1_euk Eukaryoti 46.5 33 0.00071 27.1 4.0 37 40-76 182-218 (247)
151 PRK10619 histidine/lysine/argi 46.3 44 0.00095 26.3 4.7 35 42-76 177-211 (257)
152 cd03215 ABC_Carb_Monos_II This 46.3 50 0.0011 24.6 4.8 36 41-76 128-163 (182)
153 PLN02954 phosphoserine phospha 46.1 24 0.00052 26.7 3.1 24 54-77 87-110 (224)
154 cd03224 ABC_TM1139_LivF_branch 46.1 48 0.001 25.2 4.7 35 42-76 157-191 (222)
155 TIGR03608 L_ocin_972_ABC putat 45.6 49 0.0011 24.8 4.7 35 41-75 158-192 (206)
156 cd03257 ABC_NikE_OppD_transpor 45.5 45 0.00097 25.4 4.5 35 42-76 170-205 (228)
157 cd03279 ABC_sbcCD SbcCD and ot 45.4 46 0.00099 25.6 4.6 36 40-75 156-191 (213)
158 cd03259 ABC_Carb_Solutes_like 45.2 45 0.00097 25.3 4.4 36 41-76 154-190 (213)
159 TIGR01188 drrA daunorubicin re 45.1 48 0.001 27.1 4.8 36 41-76 148-183 (302)
160 PRK15056 manganese/iron transp 45.0 47 0.001 26.6 4.7 36 41-76 166-201 (272)
161 cd00318 Phosphoglycerate_kinas 45.0 65 0.0014 28.6 5.9 49 27-76 7-55 (397)
162 PRK09493 glnQ glutamine ABC tr 44.9 49 0.0011 25.6 4.7 36 41-76 160-195 (240)
163 PF13419 HAD_2: Haloacid dehal 44.8 29 0.00063 24.1 3.1 31 55-85 81-111 (176)
164 PRK10908 cell division protein 44.4 52 0.0011 25.2 4.7 35 41-75 161-195 (222)
165 cd03255 ABC_MJ0796_Lo1CDE_FtsE 44.3 51 0.0011 25.0 4.6 36 41-76 164-200 (218)
166 PRK11614 livF leucine/isoleuci 44.3 50 0.0011 25.5 4.7 35 42-76 162-196 (237)
167 PF13304 AAA_21: AAA domain; P 44.2 41 0.00089 23.8 3.8 36 39-74 261-296 (303)
168 PRK13649 cbiO cobalt transport 44.0 49 0.0011 26.5 4.7 35 42-76 170-204 (280)
169 PRK11231 fecE iron-dicitrate t 43.9 49 0.0011 26.0 4.6 34 42-75 163-196 (255)
170 cd03214 ABC_Iron-Siderophores_ 43.8 50 0.0011 24.6 4.4 36 41-76 121-157 (180)
171 cd03213 ABCG_EPDR ABCG transpo 43.8 54 0.0012 24.8 4.7 35 42-76 136-170 (194)
172 PRK11124 artP arginine transpo 43.4 55 0.0012 25.4 4.8 35 42-76 166-200 (242)
173 PRK13643 cbiO cobalt transport 43.3 50 0.0011 26.8 4.7 35 42-76 169-203 (288)
174 COG1010 CobJ Precorrin-3B meth 43.3 24 0.00052 29.8 2.8 24 55-78 60-83 (249)
175 PF00590 TP_methylase: Tetrapy 43.2 48 0.001 24.9 4.3 28 50-77 57-86 (210)
176 cd01825 SGNH_hydrolase_peri1 S 43.1 1.1E+02 0.0024 22.0 6.1 50 26-77 55-106 (189)
177 TIGR03771 anch_rpt_ABC anchore 43.0 53 0.0012 25.4 4.6 36 41-76 137-172 (223)
178 cd03232 ABC_PDR_domain2 The pl 42.9 57 0.0012 24.6 4.7 36 41-76 132-167 (192)
179 PRK10246 exonuclease subunit S 42.8 41 0.0009 32.8 4.7 37 39-75 979-1015(1047)
180 TIGR01662 HAD-SF-IIIA HAD-supe 42.6 28 0.0006 24.3 2.7 25 53-77 27-51 (132)
181 TIGR01670 YrbI-phosphatas 3-de 42.6 23 0.0005 26.2 2.4 20 59-78 36-55 (154)
182 PRK13641 cbiO cobalt transport 42.3 54 0.0012 26.6 4.7 35 41-75 169-203 (287)
183 cd03218 ABC_YhbG The ABC trans 42.3 58 0.0013 24.9 4.7 35 41-75 157-191 (232)
184 PRK11264 putative amino-acid A 42.2 56 0.0012 25.4 4.6 35 42-76 169-203 (250)
185 TIGR03873 F420-0_ABC_ATP propo 42.2 54 0.0012 25.8 4.6 35 41-75 161-195 (256)
186 TIGR01288 nodI ATP-binding ABC 41.8 58 0.0013 26.6 4.9 37 40-76 158-194 (303)
187 PF13439 Glyco_transf_4: Glyco 41.8 33 0.00072 23.5 3.0 23 52-77 17-39 (177)
188 cd01832 SGNH_hydrolase_like_1 41.5 1.2E+02 0.0025 21.9 6.0 50 26-78 66-116 (185)
189 cd03261 ABC_Org_Solvent_Resist 41.4 53 0.0012 25.4 4.4 36 41-76 160-196 (235)
190 cd03256 ABC_PhnC_transporter A 41.3 53 0.0011 25.3 4.4 35 42-76 169-204 (241)
191 cd03297 ABC_ModC_molybdenum_tr 41.1 55 0.0012 24.9 4.4 36 41-76 155-191 (214)
192 PRK09984 phosphonate/organopho 41.1 52 0.0011 26.0 4.4 37 40-76 175-212 (262)
193 PRK11629 lolD lipoprotein tran 40.4 61 0.0013 25.1 4.6 36 41-76 169-205 (233)
194 TIGR01261 hisB_Nterm histidino 40.0 30 0.00065 26.1 2.7 24 53-76 31-54 (161)
195 PRK13639 cbiO cobalt transport 39.9 61 0.0013 26.0 4.7 35 42-76 162-196 (275)
196 TIGR01428 HAD_type_II 2-haloal 39.7 32 0.00069 25.6 2.8 27 54-80 95-121 (198)
197 PF08282 Hydrolase_3: haloacid 39.6 70 0.0015 23.6 4.6 42 40-86 9-50 (254)
198 cd03301 ABC_MalK_N The N-termi 39.5 62 0.0013 24.5 4.4 36 41-76 154-190 (213)
199 PRK10584 putative ABC transpor 39.5 63 0.0014 24.8 4.5 36 41-76 170-206 (228)
200 cd03249 ABC_MTABC3_MDL1_MDL2 M 39.5 54 0.0012 25.3 4.2 34 41-75 163-196 (238)
201 PF13477 Glyco_trans_4_2: Glyc 39.3 38 0.00083 23.3 3.0 22 56-77 13-34 (139)
202 cd03258 ABC_MetN_methionine_tr 39.2 63 0.0014 24.8 4.5 35 41-75 164-199 (233)
203 PRK11300 livG leucine/isoleuci 39.1 65 0.0014 25.1 4.6 35 41-75 177-212 (255)
204 cd03295 ABC_OpuCA_Osmoprotecti 39.0 60 0.0013 25.2 4.4 35 42-76 160-195 (242)
205 cd03253 ABCC_ATM1_transporter 39.0 52 0.0011 25.3 4.0 34 41-75 161-194 (236)
206 PF13344 Hydrolase_6: Haloacid 38.9 37 0.0008 23.7 2.9 25 53-77 16-40 (101)
207 COG0126 Pgk 3-phosphoglycerate 38.8 81 0.0018 28.3 5.5 48 26-74 12-59 (395)
208 cd03229 ABC_Class3 This class 38.7 70 0.0015 23.7 4.6 34 42-75 125-159 (178)
209 PRK05990 precorrin-2 C(20)-met 38.6 48 0.001 26.6 3.9 26 53-78 84-109 (241)
210 COG1131 CcmA ABC-type multidru 38.6 65 0.0014 26.6 4.7 39 40-78 159-197 (293)
211 PRK10513 sugar phosphate phosp 38.4 57 0.0012 25.5 4.2 30 46-79 19-48 (270)
212 PRK11831 putative ABC transpor 38.4 63 0.0014 25.8 4.5 36 41-76 167-203 (269)
213 COG3384 Aromatic ring-opening 38.1 49 0.0011 28.1 4.0 56 15-79 118-173 (268)
214 PRK13546 teichoic acids export 38.1 70 0.0015 25.9 4.8 36 41-76 167-202 (264)
215 TIGR02253 CTE7 HAD superfamily 37.9 34 0.00074 25.7 2.8 25 55-79 98-122 (221)
216 cd03298 ABC_ThiQ_thiamine_tran 37.9 68 0.0015 24.2 4.4 35 41-75 152-187 (211)
217 TIGR02211 LolD_lipo_ex lipopro 37.8 72 0.0016 24.2 4.6 35 41-75 165-200 (221)
218 cd03293 ABC_NrtD_SsuB_transpor 37.7 70 0.0015 24.4 4.5 35 41-75 155-190 (220)
219 cd03267 ABC_NatA_like Similar 37.6 75 0.0016 24.8 4.7 36 40-75 176-212 (236)
220 cd00267 ABC_ATPase ABC (ATP-bi 37.6 85 0.0018 22.6 4.7 35 41-75 104-138 (157)
221 cd03278 ABC_SMC_barmotin Barmo 37.6 56 0.0012 25.2 4.0 36 40-76 140-175 (197)
222 PF03537 Glyco_hydro_114: Glyc 37.5 33 0.00072 23.0 2.4 45 28-72 10-54 (74)
223 PRK13543 cytochrome c biogenes 37.5 77 0.0017 24.3 4.7 35 42-76 162-196 (214)
224 COG0821 gcpE 1-hydroxy-2-methy 37.5 37 0.00081 30.0 3.2 28 50-77 32-59 (361)
225 PRK10895 lipopolysaccharide AB 37.5 73 0.0016 24.7 4.6 35 41-75 161-195 (241)
226 cd03217 ABC_FeS_Assembly ABC-t 37.4 79 0.0017 24.0 4.7 35 41-75 128-162 (200)
227 PRK13537 nodulation ABC transp 37.2 74 0.0016 26.2 4.8 34 42-75 163-196 (306)
228 cd03296 ABC_CysA_sulfate_impor 37.1 68 0.0015 24.9 4.4 36 41-76 160-196 (239)
229 PRK13637 cbiO cobalt transport 37.1 67 0.0015 26.1 4.5 37 40-76 167-204 (287)
230 PRK14250 phosphate ABC transpo 36.9 70 0.0015 25.0 4.4 36 41-76 155-191 (241)
231 smart00775 LNS2 LNS2 domain. T 36.8 48 0.001 24.9 3.4 27 54-80 30-56 (157)
232 PRK13644 cbiO cobalt transport 36.8 74 0.0016 25.6 4.7 35 41-75 160-194 (274)
233 PRK13650 cbiO cobalt transport 36.7 68 0.0015 25.9 4.5 36 41-76 164-200 (279)
234 PRK15473 cbiF cobalt-precorrin 36.7 47 0.001 26.7 3.6 26 53-78 66-91 (257)
235 TIGR02315 ABC_phnC phosphonate 36.7 69 0.0015 24.7 4.4 36 41-76 169-205 (243)
236 TIGR02247 HAD-1A3-hyp Epoxide 36.6 43 0.00093 25.2 3.1 24 54-77 97-120 (211)
237 cd03227 ABC_Class2 ABC-type Cl 36.5 91 0.002 22.9 4.8 37 39-75 103-139 (162)
238 PRK13633 cobalt transporter AT 36.5 68 0.0015 25.8 4.4 36 40-75 167-203 (280)
239 cd03234 ABCG_White The White s 36.5 82 0.0018 24.2 4.7 35 42-76 168-202 (226)
240 PRK10530 pyridoxal phosphate ( 36.4 63 0.0014 25.1 4.1 41 29-76 4-45 (272)
241 cd03271 ABC_UvrA_II The excisi 36.4 75 0.0016 26.1 4.7 37 40-76 195-231 (261)
242 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 36.3 81 0.0018 24.4 4.7 35 41-75 166-200 (224)
243 PRK13631 cbiO cobalt transport 36.3 72 0.0016 26.6 4.7 35 42-76 201-235 (320)
244 TIGR01184 ntrCD nitrate transp 36.2 75 0.0016 24.7 4.5 36 41-76 138-174 (230)
245 PRK15439 autoinducer 2 ABC tra 36.2 67 0.0015 28.2 4.7 36 41-76 427-462 (510)
246 PRK13548 hmuV hemin importer A 36.1 74 0.0016 25.2 4.6 36 41-76 164-200 (258)
247 cd03236 ABC_RNaseL_inhibitor_d 36.1 77 0.0017 25.5 4.7 36 41-76 163-198 (255)
248 TIGR01277 thiQ thiamine ABC tr 36.1 78 0.0017 24.1 4.5 36 41-76 152-188 (213)
249 PRK10976 putative hydrolase; P 36.0 66 0.0014 25.1 4.2 29 46-78 18-46 (266)
250 PF08665 PglZ: PglZ domain; I 35.9 61 0.0013 24.6 3.9 20 55-74 151-170 (181)
251 PRK15112 antimicrobial peptide 35.8 70 0.0015 25.5 4.4 36 41-76 173-209 (267)
252 cd03222 ABC_RNaseL_inhibitor T 35.7 81 0.0018 24.2 4.6 34 42-75 96-130 (177)
253 cd03785 GT1_MurG MurG is an N- 35.7 76 0.0016 25.2 4.5 20 58-77 18-37 (350)
254 PTZ00005 phosphoglycerate kina 35.6 1.2E+02 0.0025 27.3 6.1 49 26-75 15-64 (417)
255 COG1121 ZnuC ABC-type Mn/Zn tr 35.4 76 0.0017 26.5 4.6 34 42-75 164-197 (254)
256 TIGR02252 DREG-2 REG-2-like, H 35.3 41 0.00089 25.0 2.8 25 54-78 108-132 (203)
257 COG1136 SalX ABC-type antimicr 35.2 74 0.0016 26.1 4.5 39 39-77 164-203 (226)
258 PRK13638 cbiO cobalt transport 35.2 82 0.0018 25.1 4.7 35 42-76 161-195 (271)
259 PRK14988 GMP/IMP nucleotidase; 35.2 44 0.00096 26.1 3.1 25 54-78 96-120 (224)
260 TIGR02633 xylG D-xylose ABC tr 35.1 75 0.0016 27.7 4.7 37 40-76 164-200 (500)
261 PRK11288 araG L-arabinose tran 35.1 78 0.0017 27.7 4.9 36 41-76 420-455 (501)
262 cd01820 PAF_acetylesterase_lik 35.1 1.3E+02 0.0028 22.9 5.6 46 27-75 89-136 (214)
263 PRK10982 galactose/methyl gala 35.1 73 0.0016 27.7 4.7 36 41-76 415-450 (491)
264 TIGR03351 PhnX-like phosphonat 34.9 39 0.00085 25.5 2.7 30 54-83 90-119 (220)
265 PRK13536 nodulation factor exp 34.9 83 0.0018 26.6 4.9 35 41-75 196-230 (340)
266 PRK13635 cbiO cobalt transport 34.8 80 0.0017 25.5 4.6 36 41-76 164-200 (279)
267 COG0241 HisB Histidinol phosph 34.8 27 0.00058 27.8 1.8 53 50-103 30-84 (181)
268 PRK11248 tauB taurine transpor 34.7 85 0.0018 25.0 4.7 36 41-76 152-188 (255)
269 PRK13640 cbiO cobalt transport 34.7 77 0.0017 25.6 4.5 35 42-76 168-203 (282)
270 PRK13647 cbiO cobalt transport 34.6 85 0.0019 25.2 4.7 35 42-76 163-197 (274)
271 PRK11133 serB phosphoserine ph 34.6 40 0.00086 28.6 2.9 24 55-78 185-208 (322)
272 PRK10247 putative ABC transpor 34.5 80 0.0017 24.4 4.4 35 41-75 161-196 (225)
273 PRK09544 znuC high-affinity zi 34.3 80 0.0017 25.1 4.5 37 40-76 143-180 (251)
274 PRK09700 D-allose transporter 34.3 80 0.0017 27.6 4.8 36 41-76 169-204 (510)
275 PRK09456 ?-D-glucose-1-phospha 34.3 50 0.0011 24.8 3.2 24 54-77 87-110 (199)
276 PRK09700 D-allose transporter 34.2 81 0.0018 27.6 4.8 37 40-76 432-468 (510)
277 cd03252 ABCC_Hemolysin The ABC 34.1 69 0.0015 24.7 4.0 36 40-76 161-196 (237)
278 TIGR01545 YfhB_g-proteo haloac 34.0 45 0.00098 26.1 3.0 22 56-77 99-121 (210)
279 PRK10253 iron-enterobactin tra 33.6 83 0.0018 25.0 4.5 35 42-76 168-203 (265)
280 PRK03695 vitamin B12-transport 33.5 91 0.002 24.5 4.7 36 41-76 157-192 (248)
281 PRK10938 putative molybdenum t 33.3 81 0.0018 27.4 4.7 37 40-76 158-194 (490)
282 PRK06769 hypothetical protein; 33.3 44 0.00096 25.1 2.7 25 53-77 30-54 (173)
283 PRK10762 D-ribose transporter 33.3 85 0.0019 27.4 4.8 37 40-76 418-454 (501)
284 COG1122 CbiO ABC-type cobalt t 33.3 88 0.0019 25.4 4.6 34 42-75 163-197 (235)
285 TIGR01465 cobM_cbiF precorrin- 33.3 62 0.0013 25.0 3.6 26 53-78 57-82 (229)
286 cd04955 GT1_like_6 This family 33.1 1E+02 0.0022 24.0 4.8 38 35-77 5-42 (363)
287 cd06167 LabA_like LabA_like pr 33.1 47 0.001 23.7 2.7 22 55-76 111-132 (149)
288 TIGR01454 AHBA_synth_RP 3-amin 33.0 53 0.0012 24.6 3.1 26 54-79 78-103 (205)
289 PRK13642 cbiO cobalt transport 32.8 87 0.0019 25.2 4.5 35 42-76 165-200 (277)
290 TIGR01449 PGP_bact 2-phosphogl 32.7 52 0.0011 24.4 3.0 24 55-78 89-112 (213)
291 PF00300 His_Phos_1: Histidine 32.7 97 0.0021 21.5 4.3 24 55-78 131-154 (158)
292 cd01828 sialate_O-acetylestera 32.7 1.9E+02 0.004 20.7 6.0 47 26-76 47-96 (169)
293 cd03239 ABC_SMC_head The struc 32.6 1E+02 0.0022 23.4 4.7 37 40-76 121-157 (178)
294 TIGR02009 PGMB-YQAB-SF beta-ph 32.5 47 0.001 24.0 2.7 22 55-76 92-113 (185)
295 PRK10575 iron-hydroxamate tran 32.4 91 0.002 24.8 4.5 35 42-76 172-207 (265)
296 PRK13646 cbiO cobalt transport 32.3 88 0.0019 25.3 4.5 36 41-76 169-205 (286)
297 PRK10528 multifunctional acyl- 32.3 1.7E+02 0.0036 22.0 5.8 46 27-76 71-117 (191)
298 PRK13634 cbiO cobalt transport 32.2 91 0.002 25.3 4.6 37 40-76 168-205 (290)
299 TIGR00618 sbcc exonuclease Sbc 32.1 80 0.0017 30.6 4.8 39 38-76 981-1019(1042)
300 PRK15439 autoinducer 2 ABC tra 32.0 88 0.0019 27.5 4.7 37 40-76 163-199 (510)
301 TIGR02770 nickel_nikD nickel i 31.9 91 0.002 24.1 4.3 35 42-76 150-185 (230)
302 PRK10826 2-deoxyglucose-6-phos 31.8 54 0.0012 24.9 3.0 26 55-80 96-121 (222)
303 PF10137 TIR-like: Predicted n 31.7 16 0.00034 27.3 0.0 55 55-113 11-66 (125)
304 PRK00994 F420-dependent methyl 31.7 62 0.0013 27.7 3.5 39 32-77 2-41 (277)
305 cd03294 ABC_Pro_Gly_Bertaine T 31.6 95 0.0021 24.8 4.5 36 41-76 184-220 (269)
306 PRK11590 hypothetical protein; 31.5 51 0.0011 25.3 2.9 22 56-77 100-122 (211)
307 PRK13549 xylose transporter AT 31.4 96 0.0021 27.2 4.8 36 41-76 429-464 (506)
308 cd01840 SGNH_hydrolase_yrhL_li 31.4 1.3E+02 0.0028 21.7 4.8 39 27-76 50-88 (150)
309 TIGR02633 xylG D-xylose ABC tr 31.3 95 0.0021 27.0 4.8 36 41-76 427-462 (500)
310 cd04501 SGNH_hydrolase_like_4 31.2 2E+02 0.0043 20.8 5.8 50 26-78 58-107 (183)
311 cd03251 ABCC_MsbA MsbA is an e 31.1 83 0.0018 24.1 4.0 35 41-76 162-196 (234)
312 cd01835 SGNH_hydrolase_like_3 31.1 2.1E+02 0.0046 20.9 6.0 52 26-77 68-121 (193)
313 PRK10982 galactose/methyl gala 30.7 98 0.0021 26.9 4.8 36 41-76 158-193 (491)
314 TIGR01990 bPGM beta-phosphoglu 30.7 56 0.0012 23.6 2.8 23 55-77 91-113 (185)
315 PRK05576 cobalt-precorrin-2 C( 30.5 83 0.0018 24.7 3.9 27 52-78 75-101 (229)
316 PRK13652 cbiO cobalt transport 30.4 1E+02 0.0022 24.7 4.5 35 42-76 162-197 (277)
317 KOG2728|consensus 30.4 55 0.0012 28.2 3.0 24 55-78 16-41 (302)
318 TIGR01668 YqeG_hyp_ppase HAD s 30.2 66 0.0014 24.1 3.2 47 26-77 23-69 (170)
319 PRK13648 cbiO cobalt transport 30.2 1.1E+02 0.0023 24.4 4.6 35 41-75 166-201 (269)
320 cd03300 ABC_PotA_N PotA is an 30.0 1.1E+02 0.0024 23.6 4.5 35 42-76 155-190 (232)
321 cd03273 ABC_SMC2_euk Eukaryoti 29.9 1E+02 0.0022 24.3 4.3 34 40-74 193-226 (251)
322 PRK11247 ssuB aliphatic sulfon 29.9 1.1E+02 0.0023 24.6 4.5 36 41-76 157-193 (257)
323 COG1129 MglA ABC-type sugar tr 29.9 78 0.0017 29.1 4.1 36 41-76 425-460 (500)
324 TIGR02323 CP_lyasePhnK phospho 29.9 1.1E+02 0.0023 23.9 4.5 36 41-76 172-208 (253)
325 PTZ00174 phosphomannomutase; P 29.7 1E+02 0.0022 24.4 4.3 45 28-79 5-50 (247)
326 TIGR03162 ribazole_cobC alpha- 29.7 1.1E+02 0.0024 22.3 4.3 32 49-80 117-150 (177)
327 TIGR02434 CobF precorrin-6A sy 29.6 64 0.0014 26.5 3.3 25 55-79 90-114 (249)
328 PRK13541 cytochrome c biogenes 29.6 1.2E+02 0.0027 22.7 4.6 34 41-74 147-180 (195)
329 TIGR01467 cobI_cbiL precorrin- 29.6 89 0.0019 24.4 4.0 28 51-78 74-101 (230)
330 TIGR03005 ectoine_ehuA ectoine 29.5 1.1E+02 0.0023 24.0 4.4 36 41-76 170-206 (252)
331 TIGR02982 heterocyst_DevA ABC 29.5 1.3E+02 0.0028 23.0 4.8 36 41-76 165-201 (220)
332 PRK11288 araG L-arabinose tran 29.4 1.1E+02 0.0023 26.8 4.8 36 41-76 164-199 (501)
333 TIGR03864 PQQ_ABC_ATP ABC tran 29.3 1.3E+02 0.0027 23.3 4.8 36 41-76 156-192 (236)
334 TIGR02769 nickel_nikE nickel i 29.3 1.1E+02 0.0023 24.4 4.4 35 42-76 175-210 (265)
335 PRK08942 D,D-heptose 1,7-bisph 29.2 58 0.0013 24.2 2.7 25 53-77 31-55 (181)
336 TIGR01077 L13_A_E ribosomal pr 29.0 75 0.0016 24.3 3.3 26 52-77 9-34 (142)
337 TIGR03410 urea_trans_UrtE urea 29.0 1.2E+02 0.0027 23.2 4.6 35 42-76 156-191 (230)
338 COG2884 FtsE Predicted ATPase 28.9 1.1E+02 0.0025 25.4 4.6 38 39-76 159-196 (223)
339 PRK11701 phnK phosphonate C-P 28.8 1.1E+02 0.0025 24.0 4.5 36 41-76 175-211 (258)
340 cd06259 YdcF-like YdcF-like. Y 28.7 2.2E+02 0.0047 20.3 5.8 85 33-127 4-91 (150)
341 TIGR00968 3a0106s01 sulfate AB 28.7 1.2E+02 0.0026 23.6 4.5 34 42-75 155-189 (237)
342 cd03237 ABC_RNaseL_inhibitor_d 28.7 1.1E+02 0.0024 24.4 4.4 36 41-76 139-175 (246)
343 PRK11587 putative phosphatase; 28.7 66 0.0014 24.5 3.0 25 54-78 86-110 (218)
344 PRK14242 phosphate transporter 28.6 1E+02 0.0023 24.0 4.2 35 41-76 173-207 (253)
345 PF13911 AhpC-TSA_2: AhpC/TSA 28.5 60 0.0013 22.4 2.6 30 56-85 2-31 (115)
346 TIGR01489 DKMTPPase-SF 2,3-dik 28.5 64 0.0014 23.3 2.8 22 56-77 77-98 (188)
347 PHA02530 pseT polynucleotide k 28.3 45 0.00097 26.6 2.1 35 52-86 188-222 (300)
348 PRK13636 cbiO cobalt transport 28.1 1.2E+02 0.0026 24.5 4.5 35 42-76 166-201 (283)
349 PRK13547 hmuV hemin importer A 27.9 1.1E+02 0.0024 24.8 4.3 35 42-76 179-214 (272)
350 PF01740 STAS: STAS domain; I 27.9 1.2E+02 0.0027 20.5 4.1 40 28-74 48-87 (117)
351 PRK10938 putative molybdenum t 27.8 1E+02 0.0022 26.7 4.4 37 40-76 424-461 (490)
352 PRK05948 precorrin-2 methyltra 27.7 92 0.002 25.2 3.9 30 51-80 76-105 (238)
353 cd07041 STAS_RsbR_RsbS_like Su 27.7 1.2E+02 0.0027 20.4 4.0 53 27-86 40-93 (109)
354 cd03254 ABCC_Glucan_exporter_l 27.6 1E+02 0.0023 23.5 4.0 36 40-76 162-197 (229)
355 PF13579 Glyco_trans_4_4: Glyc 27.5 73 0.0016 21.4 2.8 22 53-77 7-28 (160)
356 PRK01158 phosphoglycolate phos 27.4 84 0.0018 23.8 3.4 25 55-79 24-48 (230)
357 COG4359 Uncharacterized conser 27.3 58 0.0013 27.0 2.6 21 56-76 78-98 (220)
358 TIGR01459 HAD-SF-IIA-hyp4 HAD- 27.2 65 0.0014 25.2 2.8 47 25-78 5-51 (242)
359 PF01380 SIS: SIS domain SIS d 27.2 1E+02 0.0022 21.0 3.5 23 54-76 67-89 (131)
360 PRK02224 chromosome segregatio 27.1 1.1E+02 0.0023 28.7 4.6 39 39-77 815-854 (880)
361 PRK15134 microcin C ABC transp 27.1 1.1E+02 0.0025 26.9 4.6 37 40-76 179-216 (529)
362 cd07372 2A5CPDO_B The beta sub 27.0 1.7E+02 0.0037 24.5 5.4 51 28-78 140-191 (294)
363 COG0801 FolK 7,8-dihydro-6-hyd 26.9 2E+02 0.0043 22.6 5.4 39 28-76 1-40 (160)
364 PRK06394 rpl13p 50S ribosomal 26.9 88 0.0019 24.1 3.4 27 52-78 13-39 (146)
365 PF02606 LpxK: Tetraacyldisacc 26.7 1.4E+02 0.0031 25.4 4.9 43 28-77 33-75 (326)
366 TIGR03269 met_CoM_red_A2 methy 26.4 1.1E+02 0.0025 26.7 4.5 37 40-76 450-487 (520)
367 PRK13222 phosphoglycolate phos 26.2 72 0.0016 23.9 2.8 32 54-85 96-127 (226)
368 PRK13549 xylose transporter AT 26.0 1.3E+02 0.0029 26.3 4.8 37 40-76 166-202 (506)
369 PF14671 DSPn: Dual specificit 25.9 1.2E+02 0.0026 23.2 4.0 32 46-77 42-77 (141)
370 cd05014 SIS_Kpsf KpsF-like pro 25.9 1E+02 0.0022 21.2 3.4 24 54-77 61-84 (128)
371 PTZ00068 60S ribosomal protein 25.8 90 0.0019 25.5 3.4 24 52-75 14-37 (202)
372 PRK14258 phosphate ABC transpo 25.8 1.4E+02 0.003 23.7 4.5 36 41-76 174-210 (261)
373 cd03228 ABCC_MRP_Like The MRP 25.7 1.3E+02 0.0027 22.2 4.0 34 40-74 119-152 (171)
374 cd03784 GT1_Gtf_like This fami 25.7 1.3E+02 0.0027 24.8 4.4 28 52-79 13-40 (401)
375 cd05560 Xcc1710_like Xcc1710_l 25.7 1.8E+02 0.004 20.7 4.7 51 65-129 50-100 (109)
376 PRK15093 antimicrobial peptide 25.6 1.3E+02 0.0029 25.0 4.5 36 41-76 182-218 (330)
377 PF06941 NT5C: 5' nucleotidase 25.6 43 0.00093 25.3 1.5 30 49-78 71-100 (191)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 25.5 1E+02 0.0023 23.7 3.7 61 22-85 71-131 (185)
379 TIGR02886 spore_II_AA anti-sig 25.5 1.2E+02 0.0025 20.4 3.5 32 47-78 51-83 (106)
380 PRK10771 thiQ thiamine transpo 25.5 1.4E+02 0.003 23.0 4.4 35 42-76 154-189 (232)
381 TIGR02127 pyrF_sub2 orotidine 25.4 1.1E+02 0.0024 25.3 4.0 38 30-72 54-91 (261)
382 COG0561 Cof Predicted hydrolas 25.4 1.3E+02 0.0028 23.5 4.2 24 55-78 24-47 (264)
383 TIGR00087 surE 5'/3'-nucleotid 25.2 73 0.0016 26.2 2.9 31 39-75 4-34 (244)
384 PRK10762 D-ribose transporter 25.1 1.4E+02 0.003 26.1 4.7 37 40-76 164-200 (501)
385 PRK14245 phosphate ABC transpo 25.1 1.5E+02 0.0032 23.2 4.5 34 42-76 171-204 (250)
386 PF02739 5_3_exonuc_N: 5'-3' e 25.1 1.1E+02 0.0023 23.5 3.6 43 29-76 92-134 (169)
387 cd00392 Ribosomal_L13 Ribosoma 25.1 98 0.0021 22.7 3.2 26 52-77 10-47 (114)
388 PRK13288 pyrophosphatase PpaX; 25.1 86 0.0019 23.6 3.1 23 55-77 86-108 (214)
389 cd03247 ABCC_cytochrome_bd The 25.0 1.5E+02 0.0032 22.0 4.3 35 40-75 121-155 (178)
390 TIGR01469 cobA_cysG_Cterm urop 25.0 1E+02 0.0023 23.8 3.6 26 53-78 63-88 (236)
391 PRK08284 precorrin 6A synthase 24.9 88 0.0019 25.7 3.3 26 55-80 91-116 (253)
392 cd00758 MoCF_BD MoCF_BD: molyb 24.9 63 0.0014 23.3 2.2 27 54-82 46-72 (133)
393 PF12910 RelB_N: Antitoxin of 24.8 57 0.0012 20.0 1.7 21 50-74 10-30 (46)
394 PRK10419 nikE nickel transport 24.8 1.4E+02 0.003 23.9 4.3 35 42-76 176-211 (268)
395 cd03233 ABC_PDR_domain1 The pl 24.7 1.6E+02 0.0036 22.3 4.6 36 41-76 142-178 (202)
396 PRK11308 dppF dipeptide transp 24.7 1.4E+02 0.0029 25.1 4.4 37 40-76 177-214 (327)
397 PRK14269 phosphate ABC transpo 24.7 1.4E+02 0.0031 23.2 4.3 34 42-76 167-200 (246)
398 COG3265 GntK Gluconate kinase 24.6 1.1E+02 0.0023 24.4 3.5 28 49-76 49-76 (161)
399 PRK08238 hypothetical protein; 24.6 90 0.0019 28.0 3.5 26 53-78 74-99 (479)
400 TIGR03411 urea_trans_UrtD urea 24.6 1.5E+02 0.0033 22.9 4.4 35 41-76 167-201 (242)
401 cd03299 ABC_ModC_like Archeal 24.5 1.6E+02 0.0034 22.9 4.5 35 42-76 154-189 (235)
402 cd03260 ABC_PstB_phosphate_tra 24.5 1.5E+02 0.0033 22.6 4.4 36 40-76 164-199 (227)
403 cd01830 XynE_like SGNH_hydrola 24.4 3E+02 0.0065 20.6 6.0 48 28-75 75-127 (204)
404 PRK03918 chromosome segregatio 24.4 1.3E+02 0.0028 28.0 4.6 37 40-76 817-853 (880)
405 TIGR01685 MDP-1 magnesium-depe 24.2 64 0.0014 25.0 2.2 41 37-79 33-74 (174)
406 TIGR01487 SPP-like sucrose-pho 24.2 1E+02 0.0022 23.3 3.4 25 55-79 22-46 (215)
407 COG2453 CDC14 Predicted protei 24.2 1.5E+02 0.0033 22.6 4.3 31 44-74 82-112 (180)
408 PRK09216 rplM 50S ribosomal pr 24.2 1E+02 0.0023 23.7 3.4 27 52-78 24-62 (144)
409 TIGR01484 HAD-SF-IIB HAD-super 24.2 1.1E+02 0.0025 22.7 3.5 32 55-86 21-52 (204)
410 TIGR02667 moaB_proteo molybden 24.0 76 0.0016 24.1 2.6 29 54-83 49-78 (163)
411 TIGR01187 potA spermidine/putr 24.0 1.5E+02 0.0032 24.7 4.5 36 41-76 124-160 (325)
412 PLN02645 phosphoglycolate phos 23.9 80 0.0017 26.1 2.9 47 24-77 24-70 (311)
413 COG1213 Predicted sugar nucleo 23.9 83 0.0018 26.4 3.0 21 56-76 34-55 (239)
414 COG0300 DltE Short-chain dehyd 23.9 72 0.0016 26.7 2.6 32 36-75 7-38 (265)
415 PF05991 NYN_YacP: YacP-like N 23.9 70 0.0015 24.4 2.4 27 47-76 77-103 (166)
416 TIGR02137 HSK-PSP phosphoserin 23.9 79 0.0017 24.7 2.7 22 56-78 73-94 (203)
417 PRK11153 metN DL-methionine tr 23.8 1.5E+02 0.0033 24.9 4.5 36 41-76 164-200 (343)
418 TIGR02463 MPGP_rel mannosyl-3- 23.7 1E+02 0.0022 23.3 3.3 30 56-85 21-50 (221)
419 PRK00366 ispG 4-hydroxy-3-meth 23.6 2E+02 0.0044 25.5 5.4 31 49-79 37-67 (360)
420 COG4229 Predicted enolase-phos 23.6 75 0.0016 26.4 2.6 40 47-86 99-138 (229)
421 PRK10418 nikD nickel transport 23.5 1.6E+02 0.0035 23.1 4.4 36 41-76 164-200 (254)
422 PF00702 Hydrolase: haloacid d 23.4 75 0.0016 23.2 2.4 23 54-76 130-152 (215)
423 PLN03243 haloacid dehalogenase 23.3 93 0.002 25.2 3.1 26 54-79 112-137 (260)
424 PRK15079 oligopeptide ABC tran 23.3 1.5E+02 0.0033 24.9 4.5 35 41-75 185-220 (331)
425 PRK13645 cbiO cobalt transport 23.3 1.6E+02 0.0034 23.8 4.4 36 41-76 174-210 (289)
426 PRK06136 uroporphyrin-III C-me 23.3 1.1E+02 0.0024 24.0 3.5 25 54-78 67-91 (249)
427 cd03277 ABC_SMC5_euk Eukaryoti 23.2 1.6E+02 0.0034 23.0 4.3 36 40-75 153-190 (213)
428 TIGR02142 modC_ABC molybdenum 23.2 1.6E+02 0.0034 24.8 4.6 36 41-76 155-191 (354)
429 PRK14268 phosphate ABC transpo 23.1 1.7E+02 0.0037 23.0 4.5 35 41-76 178-212 (258)
430 PRK10851 sulfate/thiosulfate t 23.0 1.6E+02 0.0035 25.0 4.6 38 40-77 159-197 (353)
431 cd03369 ABCC_NFT1 Domain 2 of 23.0 1.4E+02 0.0031 22.5 3.9 34 42-76 150-183 (207)
432 PF06722 DUF1205: Protein of u 22.9 29 0.00063 24.7 0.1 51 27-82 39-89 (97)
433 PTZ00123 phosphoglycerate muta 22.9 1.4E+02 0.0031 23.7 4.0 16 65-80 159-174 (236)
434 PRK13932 stationary phase surv 22.8 85 0.0018 26.2 2.8 29 40-74 10-38 (257)
435 PRK13933 stationary phase surv 22.7 1E+02 0.0022 25.6 3.2 30 39-74 4-33 (253)
436 PF14090 HTH_39: Helix-turn-he 22.5 87 0.0019 20.5 2.3 22 53-74 27-48 (70)
437 PLN02770 haloacid dehalogenase 22.5 90 0.002 24.6 2.8 25 55-79 112-136 (248)
438 cd03290 ABCC_SUR1_N The SUR do 22.4 1.7E+02 0.0036 22.3 4.2 36 40-75 163-200 (218)
439 PRK13935 stationary phase surv 22.4 1E+02 0.0022 25.7 3.2 30 39-74 4-33 (253)
440 PRK00192 mannosyl-3-phosphogly 22.4 1.2E+02 0.0025 24.2 3.5 31 55-85 25-55 (273)
441 TIGR01548 HAD-SF-IA-hyp1 haloa 22.4 1.1E+02 0.0024 22.8 3.2 30 57-86 112-141 (197)
442 PRK15134 microcin C ABC transp 22.4 1.5E+02 0.0033 26.1 4.5 37 40-76 448-485 (529)
443 PF00572 Ribosomal_L13: Riboso 22.3 1E+02 0.0022 23.0 3.0 30 52-81 10-52 (128)
444 PRK11022 dppD dipeptide transp 22.2 1.8E+02 0.0039 24.3 4.7 37 40-76 176-213 (326)
445 cd06844 STAS Sulphate Transpor 22.2 1.7E+02 0.0038 19.6 3.9 47 27-80 38-85 (100)
446 PLN02353 probable UDP-glucose 22.1 2.7E+02 0.006 24.9 6.1 57 23-79 74-132 (473)
447 PRK14247 phosphate ABC transpo 22.1 1.7E+02 0.0037 22.7 4.3 34 42-76 171-204 (250)
448 TIGR02852 spore_dpaB dipicolin 22.0 1.5E+02 0.0032 23.6 3.9 28 50-77 11-39 (187)
449 TIGR03848 MSMEG_4193 probable 21.9 1.1E+02 0.0024 23.2 3.1 31 51-81 121-158 (204)
450 TIGR01675 plant-AP plant acid 21.9 99 0.0021 25.3 3.0 24 54-77 123-146 (229)
451 COG1523 PulA Type II secretory 21.9 1E+02 0.0022 29.4 3.4 22 51-72 262-283 (697)
452 TIGR01452 PGP_euk phosphoglyco 21.8 99 0.0021 24.9 3.0 25 53-77 20-44 (279)
453 TIGR01458 HAD-SF-IIA-hyp3 HAD- 21.8 91 0.002 25.0 2.8 23 53-75 23-45 (257)
454 COG0496 SurE Predicted acid ph 21.8 1E+02 0.0022 25.9 3.1 30 39-74 4-33 (252)
455 PRK15126 thiamin pyrimidine py 21.8 1.2E+02 0.0026 23.8 3.4 30 46-79 18-47 (272)
456 PRK14244 phosphate ABC transpo 21.7 1.8E+02 0.0038 22.7 4.3 34 42-76 174-207 (251)
457 TIGR01482 SPP-subfamily Sucros 21.7 1.3E+02 0.0027 22.6 3.4 23 56-78 20-42 (225)
458 PLN02625 uroporphyrin-III C-me 21.7 1.3E+02 0.0028 24.3 3.6 26 53-78 78-103 (263)
459 PRK13478 phosphonoacetaldehyde 21.6 1.1E+02 0.0024 24.2 3.2 24 55-78 105-128 (267)
460 TIGR03269 met_CoM_red_A2 methy 21.6 1.6E+02 0.0035 25.8 4.5 37 40-76 191-228 (520)
461 TIGR00630 uvra excinuclease AB 21.6 1.6E+02 0.0034 28.9 4.7 37 39-75 511-547 (924)
462 TIGR02251 HIF-SF_euk Dullard-l 21.4 1.1E+02 0.0024 22.9 3.0 29 57-86 48-76 (162)
463 PRK10535 macrolide transporter 21.4 1.9E+02 0.0041 26.6 5.0 37 41-77 168-204 (648)
464 COG1129 MglA ABC-type sugar tr 21.4 1.8E+02 0.004 26.7 4.9 34 42-75 170-203 (500)
465 TIGR01422 phosphonatase phosph 21.3 1.3E+02 0.0027 23.5 3.4 28 55-82 103-130 (253)
466 COG0406 phoE Broad specificity 21.3 1.7E+02 0.0036 22.0 4.0 31 49-79 125-157 (208)
467 PF00128 Alpha-amylase: Alpha 21.2 1.3E+02 0.0028 23.0 3.4 23 50-72 48-70 (316)
468 PRK13937 phosphoheptose isomer 21.2 1.7E+02 0.0037 22.4 4.1 30 50-79 21-50 (188)
469 TIGR01663 PNK-3'Pase polynucle 21.2 96 0.0021 28.4 3.0 24 53-76 199-222 (526)
470 PRK11144 modC molybdate transp 21.1 1.7E+02 0.0038 24.6 4.4 36 41-76 152-188 (352)
471 PRK11000 maltose/maltodextrin 21.1 1.6E+02 0.0035 25.1 4.3 37 40-76 156-193 (369)
472 TIGR01066 rplM_bact ribosomal 21.1 1.3E+02 0.0028 23.0 3.3 27 52-78 22-60 (140)
473 PRK14274 phosphate ABC transpo 21.0 1.8E+02 0.004 22.8 4.3 34 42-76 180-213 (259)
474 PRK13632 cbiO cobalt transport 20.9 1.9E+02 0.0041 23.1 4.4 35 41-75 166-201 (271)
475 PRK09473 oppD oligopeptide tra 20.8 1.8E+02 0.0039 24.4 4.4 36 40-75 184-220 (330)
476 cd06558 crotonase-like Crotona 20.8 1.9E+02 0.0041 21.3 4.1 31 46-76 21-52 (195)
477 TIGR03258 PhnT 2-aminoethylpho 20.8 1.8E+02 0.0039 24.9 4.5 37 40-76 160-198 (362)
478 PRK13223 phosphoglycolate phos 20.7 1.1E+02 0.0024 24.7 3.0 27 53-79 103-129 (272)
479 PRK13545 tagH teichoic acids e 20.5 1.8E+02 0.0038 27.1 4.6 37 40-76 166-202 (549)
480 PRK03459 rnpA ribonuclease P; 20.5 79 0.0017 23.3 2.0 38 34-76 57-94 (122)
481 PRK00349 uvrA excinuclease ABC 20.5 1.7E+02 0.0037 28.8 4.7 38 39-76 513-550 (943)
482 PRK10744 pstB phosphate transp 20.4 2E+02 0.0044 22.6 4.4 35 41-76 180-214 (260)
483 PRK03669 mannosyl-3-phosphogly 20.4 1.3E+02 0.0028 23.9 3.3 47 27-80 6-53 (271)
484 COG4694 Uncharacterized protei 20.3 1.6E+02 0.0034 28.4 4.2 42 36-77 556-597 (758)
485 cd00248 Mth938-like Mth938-lik 20.3 2.9E+02 0.0062 19.6 4.8 47 68-129 53-100 (109)
486 PRK11650 ugpC glycerol-3-phosp 20.2 1.9E+02 0.0041 24.6 4.5 37 40-76 157-194 (356)
487 PRK14273 phosphate ABC transpo 20.2 2E+02 0.0044 22.4 4.4 33 42-75 175-207 (254)
488 PRK14266 phosphate ABC transpo 20.2 2E+02 0.0044 22.3 4.4 34 41-75 170-203 (250)
489 PRK14270 phosphate ABC transpo 20.1 2.1E+02 0.0045 22.3 4.4 34 41-75 171-204 (251)
490 PLN02779 haloacid dehalogenase 20.1 1.3E+02 0.0027 24.6 3.3 25 54-78 147-171 (286)
491 TIGR01457 HAD-SF-IIA-hyp2 HAD- 20.1 1.1E+02 0.0023 24.4 2.8 21 55-75 21-41 (249)
492 TIGR00177 molyb_syn molybdenum 20.1 99 0.0021 22.7 2.5 27 54-82 54-80 (144)
493 cd03280 ABC_MutS2 MutS2 homolo 20.1 2.6E+02 0.0057 21.1 4.9 38 39-76 112-150 (200)
494 cd04906 ACT_ThrD-I_1 First of 20.1 1.6E+02 0.0035 19.6 3.3 26 54-79 53-78 (85)
495 PRK14249 phosphate ABC transpo 20.0 2.2E+02 0.0048 22.1 4.6 34 42-76 172-205 (251)
496 TIGR02461 osmo_MPG_phos mannos 20.0 1.2E+02 0.0026 23.8 3.1 26 54-79 18-43 (225)
497 cd03802 GT1_AviGT4_like This f 20.0 1.2E+02 0.0026 23.4 3.0 23 52-77 24-46 (335)
498 TIGR02467 CbiE precorrin-6y C5 20.0 1.1E+02 0.0023 23.5 2.7 25 53-78 53-77 (204)
No 1
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.5e-31 Score=223.78 Aligned_cols=103 Identities=29% Similarity=0.439 Sum_probs=96.1
Q ss_pred hccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc-cccCChHHHhhhccCC
Q psy11676 25 LKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ-ELLMSLSMRETLSPKD 103 (131)
Q Consensus 25 l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~-~~l~~~~~~qalaa~~ 103 (131)
+.+++|||||||||+|++++ +.+|.++|..||++|++|+++|+|||||||||||+|+..|+. ++|..++.+||+||.|
T Consensus 3 ~~~~~riVvKiGSs~Lt~~~-g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVG 81 (369)
T COG0263 3 LSSARRIVVKIGSSSLTDGT-GGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVG 81 (369)
T ss_pred CCcceEEEEEECcceeeCCC-CCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhC
Confidence 67899999999999999985 789999999999999999999999999999999999999995 6788899999998866
Q ss_pred ----------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 104 ----------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 104 ----------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
|||++||++|+||.|+||||+.|..
T Consensus 82 Q~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~ 128 (369)
T COG0263 82 QVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLE 128 (369)
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999864
No 2
>KOG1154|consensus
Probab=99.95 E-value=7.8e-28 Score=198.28 Aligned_cols=108 Identities=52% Similarity=0.656 Sum_probs=96.9
Q ss_pred hhHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccccccCCh-------
Q psy11676 21 DRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLMSL------- 93 (131)
Q Consensus 21 ~r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~l~~~------- 93 (131)
.|..+++++|||||+||+++|+++++++.+.+|..||+|+++|++.|+||+||||||||.|+++|.++++++.
T Consensus 2 ~r~~~kka~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~ 81 (285)
T KOG1154|consen 2 KRAFLKKAYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLK 81 (285)
T ss_pred cchhhccceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhC
Confidence 4667899999999999999999998889999999999999999999999999999999999999998777644
Q ss_pred -----HHHhhhccCC----------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 94 -----SMRETLSPKD----------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 94 -----~~~qalaa~~----------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
+.+||+||.| |+|+.||.++++|.|++|||+.|.+
T Consensus 82 ~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~ 143 (285)
T KOG1154|consen 82 PQSELAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLS 143 (285)
T ss_pred CccchhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHh
Confidence 4455666655 5699999999999999999998864
No 3
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.92 E-value=3.4e-25 Score=182.40 Aligned_cols=107 Identities=50% Similarity=0.646 Sum_probs=93.8
Q ss_pred hHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccccc------------
Q psy11676 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQEL------------ 89 (131)
Q Consensus 22 r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~------------ 89 (131)
|..++++||||||||||+||+++++.++.++|..||+||++|+++|++||||||||+++|+..++...
T Consensus 2 ~~~~~~~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g 81 (284)
T cd04256 2 RSELKHAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKS 81 (284)
T ss_pred chhhccCCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhccc
Confidence 34577899999999999999876337999999999999999999999999999999999999997432
Q ss_pred ------cCChHHHhhhccCC----------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 90 ------LMSLSMRETLSPKD----------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 90 ------l~~~~~~qalaa~~----------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
|++...+|++++.| ++|++||.++++|.|++++|+.|+.
T Consensus 82 ~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~ 148 (284)
T cd04256 82 GQLKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLR 148 (284)
T ss_pred ccccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHH
Confidence 67777788877755 4699999999999999999998864
No 4
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.87 E-value=2.2e-22 Score=164.82 Aligned_cols=103 Identities=29% Similarity=0.373 Sum_probs=85.8
Q ss_pred hHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc--------------
Q psy11676 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ-------------- 87 (131)
Q Consensus 22 r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~-------------- 87 (131)
+..++++||||||+|||+|++. ++++..++..|+++|++|++ +++||||||||+|+|+..++.
T Consensus 2 ~~~~~~~~riVIKlG~Svit~~--~~~~~~~~~~l~~~i~~l~~-~~~vilVssGava~g~~~~~~~~~~~~~~qa~aai 78 (264)
T PTZ00489 2 ADILKSVKRIVVKVGSSILVDN--QEIAAHRIEALCRFIADLQT-KYEVILVTSGAVAAGYTKKEMDKSYVPNKQALASM 78 (264)
T ss_pred hhhhhcCCEEEEEeccceeeCC--CCcCHHHHHHHHHHHHHHhc-CCeEEEEecChHhcChhhcCCCccccHHHHHHHHh
Confidence 5567889999999999999975 36999999999999999997 799999999999999997753
Q ss_pred --cccCChHHHhh------hccCCCcccccccCcchhhhHHhHHHHhhh
Q psy11676 88 --ELLMSLSMRET------LSPKDHSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 88 --~~l~~~~~~qa------laa~~llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
+.||+ .|.+. .++|.|+|..||.++++|.|++|||+.|+.
T Consensus 79 Gq~~L~~-~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~ 126 (264)
T PTZ00489 79 GQPLLMH-MYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLIS 126 (264)
T ss_pred CHHHHHH-HHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHH
Confidence 33443 33333 344556799999999999999999998874
No 5
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.85 E-value=9.6e-22 Score=167.64 Aligned_cols=101 Identities=25% Similarity=0.365 Sum_probs=87.3
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc-cccCChHHHhhhccCC-
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ-ELLMSLSMRETLSPKD- 103 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~-~~l~~~~~~qalaa~~- 103 (131)
.+++|||||||||+|++++ +++|.++|..+|++|++|+++|++|||||||||++|+..|+. .+| ++..+|++++.|
T Consensus 3 ~~~kriVIKiGgs~L~~~~-~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~-~~~~~qalaavGq 80 (368)
T PRK13402 3 SNWKRIVVKVGSSLLTPHH-QGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRP-SVPEKQAMAAAGQ 80 (368)
T ss_pred CCCcEEEEEEchhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCC-CccHHHHHHHhhH
Confidence 4679999999999999875 689999999999999999999999999999999999988873 333 455666665544
Q ss_pred ---------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 104 ---------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 104 ---------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
++|.+||.++++|.|+++||+.|+.
T Consensus 81 ~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~~~y~n~~~~l~~LL~ 126 (368)
T PRK13402 81 GLLMATWSKLFLSHGFPAAQLLLTHGDLRDRERYINIRNTINVLLE 126 (368)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecchhhhHHHHHHHHHHHHHHHH
Confidence 4599999999999999999998874
No 6
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.85 E-value=1.4e-21 Score=158.98 Aligned_cols=105 Identities=28% Similarity=0.442 Sum_probs=90.7
Q ss_pred HhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc-cccCChHHHhhhcc
Q psy11676 23 GQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ-ELLMSLSMRETLSP 101 (131)
Q Consensus 23 ~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~-~~l~~~~~~qalaa 101 (131)
..+.++++||||+|+|+|++++ +.++.++|..+|++|++++.+|++||+|||||+++|+..++. .+|..+..+|++++
T Consensus 4 ~~~~~~~~iViK~Ggs~l~~~~-~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa 82 (266)
T PRK12314 4 RQLENAKRIVIKVGSSTLSYEN-GKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAA 82 (266)
T ss_pred hhHhhCCEEEEEeCCCeeeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHH
Confidence 4466789999999999999876 589999999999999999999999999999999999998874 33445666777665
Q ss_pred CC----------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 102 KD----------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 102 ~~----------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
.| ++|++||.++++|.|+.++|+-|+-
T Consensus 83 ~Gq~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~ 131 (266)
T PRK12314 83 VGQPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLE 131 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHH
Confidence 44 5699999999999999999998864
No 7
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.84 E-value=4.4e-21 Score=174.17 Aligned_cols=105 Identities=38% Similarity=0.500 Sum_probs=91.1
Q ss_pred hhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcccc-----------ccCC
Q psy11676 24 QLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQE-----------LLMS 92 (131)
Q Consensus 24 ~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~-----------~l~~ 92 (131)
.++++||||||||||+|++++ +.++.++|..++++|++|+++|++||||||||+++|+..++.. ++++
T Consensus 3 ~~~~~~~iViKiGss~lt~~~-~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~ 81 (715)
T TIGR01092 3 FLKDVKRIVVKVGTAVVTRGD-GRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQP 81 (715)
T ss_pred hhhcCCEEEEEeCcceeECCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCc
Confidence 356789999999999999886 6899999999999999999999999999999999999999743 3566
Q ss_pred hHHHhhhccCC----------------------CcccccccCcchhhhHHhHHHHhhhc
Q psy11676 93 LSMRETLSPKD----------------------HSRSNHFDSENPKTNIYTHIILMFVD 129 (131)
Q Consensus 93 ~~~~qalaa~~----------------------llT~~Df~~r~r~~Na~nTi~~~~~~ 129 (131)
...+|++++.| |+|++||.++++|.|+++||+.|+..
T Consensus 82 ~~~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~ 140 (715)
T TIGR01092 82 ELDGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRM 140 (715)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHC
Confidence 66667655533 67999999999999999999998753
No 8
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.82 E-value=3.1e-20 Score=168.97 Aligned_cols=110 Identities=29% Similarity=0.425 Sum_probs=93.2
Q ss_pred CcchhHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccccc--------
Q psy11676 18 SFSDRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQEL-------- 89 (131)
Q Consensus 18 ~~~~r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~-------- 89 (131)
++.+|..++++|+|||||||++|++.+ ++++.++|..++++|++|+++|++||+|||||+++|+..|+...
T Consensus 5 ~~~~~~~~~~~~~iViK~G~ssl~~~~-~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~ 83 (718)
T PLN02418 5 EDRSRAFLRDVKRVVIKVGTAVVTRDD-GRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFAD 83 (718)
T ss_pred ccchhhHHhhCCEEEEEeCCCeecCCC-CCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhccccc
Confidence 344556688899999999999999886 68999999999999999999999999999999999999998432
Q ss_pred ---cCChHHHhhhccCC----------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 90 ---LMSLSMRETLSPKD----------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 90 ---l~~~~~~qalaa~~----------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
+.....+|++++.| ++|.+||.++++|.|++++|+.|+-
T Consensus 84 ~~~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~ 147 (718)
T PLN02418 84 LQKPQMELDGKACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLD 147 (718)
T ss_pred CCCCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHH
Confidence 33233456666655 4699999999999999999998864
No 9
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.79 E-value=1.8e-19 Score=152.98 Aligned_cols=105 Identities=29% Similarity=0.438 Sum_probs=89.0
Q ss_pred hHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc-cccCChHHHhhhc
Q psy11676 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ-ELLMSLSMRETLS 100 (131)
Q Consensus 22 r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~-~~l~~~~~~qala 100 (131)
+..+.++++||||+|+|+|++.+ +.+|.++|..++++|++++++|++||||+|||+++|+..|+. .+|..+..+|+++
T Consensus 2 ~~~~~~~~~iVIKiGGs~l~~~~-~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~~l~l~~~~~~~~~~qa~a 80 (372)
T PRK05429 2 RQALSDARRIVVKVGSSLLTGGG-GGLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRERLGLPERPKTLAEKQAAA 80 (372)
T ss_pred ccchhhCCEEEEEeChhhccCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHhhcCCCCCCCchHHHHHHH
Confidence 34567889999999999999875 589999999999999999999999999999999999998874 3444555556554
Q ss_pred cCC----------------------CcccccccCcchhhhHHhHHHHhh
Q psy11676 101 PKD----------------------HSRSNHFDSENPKTNIYTHIILMF 127 (131)
Q Consensus 101 a~~----------------------llT~~Df~~r~r~~Na~nTi~~~~ 127 (131)
+.| ++|++||.++.+|.|++++|+.|+
T Consensus 81 avGq~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll 129 (372)
T PRK05429 81 AVGQSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLL 129 (372)
T ss_pred HHhHHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHH
Confidence 433 469999999999999999999886
No 10
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.79 E-value=2.2e-19 Score=152.18 Aligned_cols=99 Identities=28% Similarity=0.396 Sum_probs=84.9
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcccc-ccCChHHHhhhccCC----
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQE-LLMSLSMRETLSPKD---- 103 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~-~l~~~~~~qalaa~~---- 103 (131)
+|||||||+|+|++++ ++++.++|..++++|++++++|++||||||||+++|+..++.+ +|..+..+|++++.|
T Consensus 1 ~riVIKiGgs~l~~~~-~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~~~~~~l~~~qa~aa~Gq~~l 79 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSS-GSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLPERPKTLAEKQALAAVGQVRL 79 (363)
T ss_pred CeEEEEeccceEeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCCCCccchHHHHHHHHhChHHH
Confidence 5899999999999876 5699999999999999999999999999999999999988843 444455556555444
Q ss_pred ------------------CcccccccCcchhhhHHhHHHHhhh
Q psy11676 104 ------------------HSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 104 ------------------llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
++|++||.++++|.|++++|+.|+.
T Consensus 80 ~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~ 122 (363)
T TIGR01027 80 MQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLE 122 (363)
T ss_pred HHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHh
Confidence 4599999999999999999998864
No 11
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.60 E-value=2.4e-15 Score=120.62 Aligned_cols=98 Identities=40% Similarity=0.572 Sum_probs=79.5
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccccc-cCChHHHhhhcc-------
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQEL-LMSLSMRETLSP------- 101 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~-l~~~~~~qalaa------- 101 (131)
|||||+|+|+|++.+ +.++.+++..+|++|++++++|++||||+||++++|+..++... +..+..++++++
T Consensus 1 ~iViK~GGs~i~~~~-~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~~~~~~~~~~~~~Gq~~l~ 79 (251)
T cd04242 1 RIVVKVGSSLLTDED-GGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRPKTLPEKQALAAVGQSLLM 79 (251)
T ss_pred CEEEEeCCCeeeCCC-CCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCCCchhHHHHHHHHhHHHHH
Confidence 799999999999886 56899999999999999999999999999999999998876322 212233344333
Q ss_pred ---------C------CCcccccccCcchhhhHHhHHHHhhh
Q psy11676 102 ---------K------DHSRSNHFDSENPKTNIYTHIILMFV 128 (131)
Q Consensus 102 ---------~------~llT~~Df~~r~r~~Na~nTi~~~~~ 128 (131)
. .++|.+||.+.+.|.|+.++|+-|+.
T Consensus 80 ~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~ 121 (251)
T cd04242 80 ALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLE 121 (251)
T ss_pred HHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHH
Confidence 2 24699999999999999999988764
No 12
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.43 E-value=2.7e-13 Score=113.91 Aligned_cols=88 Identities=16% Similarity=0.294 Sum_probs=68.8
Q ss_pred CeEEEEeCccccccCCCC---CCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc--------cccCCh----
Q psy11676 29 RRLVVKLGSAVITREDEH---GLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ--------ELLMSL---- 93 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~---~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~--------~~l~~~---- 93 (131)
||||||+|+|.|+++++. .++...+..+|++|++|+++|||||||+||++.+|...|.. ..|++.
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A~ 80 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGAM 80 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHHh
Confidence 699999999999975322 25688999999999999999999999999999999988863 122221
Q ss_pred -------HHHhhhc----------------cCCCccccc--ccCcchh
Q psy11676 94 -------SMRETLS----------------PKDHSRSNH--FDSENPK 116 (131)
Q Consensus 94 -------~~~qala----------------a~~llT~~D--f~~r~r~ 116 (131)
.|.|+|. .|.++|++| |.++.++
T Consensus 81 ~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ 128 (310)
T TIGR00746 81 SQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKP 128 (310)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCc
Confidence 2333433 244679999 9999999
No 13
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.36 E-value=1.5e-12 Score=108.92 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=53.5
Q ss_pred CCeEEEEeCccccccCCCC-CCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 28 ARRLVVKLGSAVITREDEH-GLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~-~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
++|||||+|+++|+++++. .++.+.+..+|++|+.|++.|++||||+||++.+|...++
T Consensus 2 ~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~ 61 (314)
T PRK12353 2 MKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLA 61 (314)
T ss_pred CcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhc
Confidence 6899999999999987532 2899999999999999999999999999999999988666
No 14
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.29 E-value=5.7e-12 Score=99.85 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=61.1
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc-cchHHHhhhhccc-----------cccCCh-HH
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT-SGAVAFGKQKLAQ-----------ELLMSL-SM 95 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS-SGAVaaG~~~L~~-----------~~l~~~-~~ 95 (131)
+|||||+|+|+||+.+++.++.+.|..++++|+++++.|++||||+ |||++.|+...+. ...|+. .+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~ 80 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYL 80 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 6899999999999875456999999999999999999999999996 9999999875431 122332 24
Q ss_pred HhhhccCCCc
Q psy11676 96 RETLSPKDHS 105 (131)
Q Consensus 96 ~qalaa~~ll 105 (131)
.++|...|+.
T Consensus 81 ~~~l~~~gi~ 90 (231)
T PRK14558 81 KDIFEKSGLK 90 (231)
T ss_pred HHHHHHcCCC
Confidence 6777777753
No 15
>PRK00358 pyrH uridylate kinase; Provisional
Probab=98.98 E-value=1.4e-09 Score=85.68 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=49.4
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc-hHHHhhhh
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG-AVAFGKQK 84 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG-AVaaG~~~ 84 (131)
+++|||+|+|+|+++..+.++.+.+..++++|+++++.|+++|||+|| +++.|+..
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~ 57 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIG 57 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 589999999999965434689999999999999999999999999996 99888763
No 16
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=98.94 E-value=2.1e-09 Score=84.98 Aligned_cols=55 Identities=27% Similarity=0.367 Sum_probs=49.3
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc-chHHHhhhhc
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS-GAVAFGKQKL 85 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS-GAVaaG~~~L 85 (131)
|||||+|+|+|++.+ +.++.++|..++++|+++++.|++|++|+| |+++.|...+
T Consensus 1 ~iViKiGGs~l~~~~-~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~ 56 (229)
T cd04239 1 RIVLKLSGEALAGEG-GGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAA 56 (229)
T ss_pred CEEEEECcceecCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHh
Confidence 699999999999876 489999999999999999999999999997 8877776654
No 17
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=98.80 E-value=5.2e-09 Score=82.93 Aligned_cols=90 Identities=11% Similarity=0.181 Sum_probs=67.5
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccc--------cccCChHHHhhhcc
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ--------ELLMSLSMRETLSP 101 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~--------~~l~~~~~~qalaa 101 (131)
.+|||+|+|+|.++ +.+..++++|+++ +.|++||+|+||+.+.+...++. ...+. .+.++|..
T Consensus 1 ~iViK~GGs~l~~~-------~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~~~~s~Ge~~~~~-l~~~~l~~ 71 (227)
T cd04234 1 MVVQKFGGTSVASA-------ERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELALLLSFGERLSAR-LLAAALRD 71 (227)
T ss_pred CEEEEECccccCCH-------HHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 37999999999854 3789999999999 88999999999999988876542 21222 33444444
Q ss_pred CC-----------Ccccccc-cCcchhhhHHhHHHHhhh
Q psy11676 102 KD-----------HSRSNHF-DSENPKTNIYTHIILMFV 128 (131)
Q Consensus 102 ~~-----------llT~~Df-~~r~r~~Na~nTi~~~~~ 128 (131)
.| +++.+|+ .++..+.+..+.|+-++.
T Consensus 72 ~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 110 (227)
T cd04234 72 RGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLA 110 (227)
T ss_pred CCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHh
Confidence 44 4567776 778888888888887764
No 18
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=98.61 E-value=6.7e-08 Score=76.73 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=43.7
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
||||+|+++|.++ +.+..++++|+++++.|+++|+|+||+.+.+...++
T Consensus 2 iViK~GGs~l~~~-------~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~ 50 (239)
T cd04246 2 IVQKFGGTSVADI-------ERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIG 50 (239)
T ss_pred EEEEECccccCCH-------HHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHH
Confidence 7999999999853 578999999999999999999999998888877765
No 19
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=98.60 E-value=1.2e-07 Score=75.50 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=46.6
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc-cchHHHhh
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT-SGAVAFGK 82 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS-SGAVaaG~ 82 (131)
+++|||+|.|+|+++....++.+.+..++++|+++...|+++|||+ +|++..|.
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~ 56 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGV 56 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHH
Confidence 6899999999999843235899999999999999999999999888 88877776
No 20
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=98.55 E-value=6.5e-08 Score=76.94 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=43.7
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
||||+|+++|.+ .+.+..++++|..+++.|+++|+|+||+.+.+.+.++
T Consensus 2 iViK~GGs~l~~-------~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~ 50 (239)
T cd04261 2 IVQKFGGTSVAS-------IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIE 50 (239)
T ss_pred EEEEECCcccCC-------HHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHH
Confidence 899999999964 3589999999999999999999999998888887764
No 21
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=98.45 E-value=1.7e-07 Score=74.71 Aligned_cols=53 Identities=30% Similarity=0.508 Sum_probs=44.6
Q ss_pred eEEEEeCccccccCC-CCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 30 RLVVKLGSAVITRED-EHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~-~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
.||||+|+|+|++++ .+.++.++|..+++++++++ |++||||+ |+...|...+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVh-Ggg~~~~~~~ 54 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVH-GGGSFGHPKA 54 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEE-CCCcccCHHH
Confidence 389999999999753 13599999999999999998 99999995 7888887444
No 22
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=98.33 E-value=7.2e-07 Score=73.21 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=40.4
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
-+|||||+|+||+.+ .+.|..+|++|+++++ |++++||++|+.++
T Consensus 32 ~~ViKiGGSvitdk~-----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~ 76 (262)
T cd04255 32 LNVVKIGGQSIIDRG-----AEAVLPLVEEIVALRP-EHKLLILTGGGTRA 76 (262)
T ss_pred cEEEEeccceecCCc-----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHH
Confidence 499999999999863 4789999999999988 79999999999877
No 23
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=98.30 E-value=1.2e-06 Score=68.78 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=41.6
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
+|||+|+|+|++++ +.+.|..++++|++++.+ ++++||+||+..+ +.++
T Consensus 1 iViKlGGs~l~~~~----~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a-~~~~ 49 (221)
T TIGR02076 1 IVISLGGSVLSPEI----DAEFIKEFANILRKLSDE-HKVGVVVGGGKTA-RRYI 49 (221)
T ss_pred CEEEechhhcCCCC----CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHH-HHHH
Confidence 69999999999652 789999999999999887 9999999998755 4443
No 24
>PRK06635 aspartate kinase; Reviewed
Probab=98.28 E-value=6.7e-07 Score=75.67 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=44.0
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
++++|||+|+++|.+ .+.+..++++|.++++.|+++|+|+||..+.+...+.
T Consensus 1 m~~iViK~GGs~l~~-------~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~ 52 (404)
T PRK06635 1 MALIVQKFGGTSVGD-------VERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLD 52 (404)
T ss_pred CCeEEEeECCcccCC-------HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHH
Confidence 468999999999974 3588999999999999999999999997666665544
No 25
>PRK14557 pyrH uridylate kinase; Provisional
Probab=98.12 E-value=6.6e-06 Score=67.07 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=45.2
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.+.+|||||+|-++|.++++.+++...+..++++|+++.+.|++|++|-||
T Consensus 2 ~~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg 52 (247)
T PRK14557 2 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG 52 (247)
T ss_pred CcccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999876545688999999999999999999999888888
No 26
>PRK14556 pyrH uridylate kinase; Provisional
Probab=98.12 E-value=6.2e-06 Score=68.03 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=51.7
Q ss_pred CcchhHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc-hHHHh
Q psy11676 18 SFSDRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG-AVAFG 81 (131)
Q Consensus 18 ~~~~r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG-AVaaG 81 (131)
|-+.+..+.+.||||+|+|-+.|..+++.++|...+..++++|+++.+.|+||.||.-| -++-|
T Consensus 5 ~~~~~~~~~~~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 5 SSECSQKLPKLKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRG 69 (249)
T ss_pred CcccchhhhhhCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhC
Confidence 33445556679999999988889866545699999999999999999999999888765 45555
No 27
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=98.07 E-value=9.1e-06 Score=64.58 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=42.3
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|++|||+|-|+|++.+...++.+.+..++++|+++...|+++|+|.||
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg 48 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG 48 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 579999999999976534489999999999999999989999988887
No 28
>PRK08841 aspartate kinase; Validated
Probab=98.03 E-value=1.2e-05 Score=69.44 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=44.9
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
+.+|+|+|-+++.+. +.+..++++|+.+++.|++||+|.||+.+.+-..++
T Consensus 2 ~~~V~KfGGtsv~~~-------~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~ 52 (392)
T PRK08841 2 PLIVQKFGGTSVGSI-------ERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLG 52 (392)
T ss_pred CeEEEeECcccCCCH-------HHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHH
Confidence 579999998888654 488999999999999999999999999988888766
No 29
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=98.00 E-value=8.5e-06 Score=63.36 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=39.4
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHh
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG 81 (131)
|++|||+|.|++++.+ .. +..++++|+.+.+.|+++|+|+.|.-...
T Consensus 1 k~~ViK~GGs~l~~~~-----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~ 47 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKD-----EE-LRELADDIALLSQLGIKVVVVHGGGSFTD 47 (242)
T ss_dssp SEEEEEE-HHGHSSHS-----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHH
T ss_pred CeEEEEECchhhCCch-----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcC
Confidence 6899999999999753 34 89999999999999999999999875433
No 30
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=97.92 E-value=8.4e-06 Score=68.97 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=42.5
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
.||+|+|++++.++ +.+..++++|+.+++.|+++++|.||+.+.+...+
T Consensus 2 ~iViK~GGs~~~~~-------~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~ 50 (401)
T TIGR00656 2 LIVQKFGGTSVGSG-------ERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALV 50 (401)
T ss_pred cEEEEECCcCcCCH-------HHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHH
Confidence 58999999999854 47899999999999999999999999877776543
No 31
>PRK08210 aspartate kinase I; Reviewed
Probab=97.90 E-value=9.8e-06 Score=68.97 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=40.1
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHh
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG 81 (131)
++++|||+|.|++++++ .+..++++|+.++++|+++|+|.||+-+.|
T Consensus 1 m~~iViK~GGs~l~~~~-------~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G 47 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEE-------RRKMAVNKIKKALKEGYKVVVVVSAMGRKG 47 (403)
T ss_pred CCeEEEeECCcccCCHH-------HHHHHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 46899999999999653 368999999999999999999999865444
No 32
>PRK00942 acetylglutamate kinase; Provisional
Probab=97.73 E-value=7.4e-05 Score=60.94 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc--hHHHhhhhcc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG--AVAFGKQKLA 86 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG--AVaaG~~~L~ 86 (131)
.+++|||+|.++|++++ .+..++++|+.|++.|.++|||+.| .+......++
T Consensus 23 ~~~iViK~GGs~l~~~~-------~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g 76 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEE-------LKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLG 76 (283)
T ss_pred CCeEEEEEChHHhcCcc-------hHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCC
Confidence 56899999999998763 4678999999999999999999988 4444343333
No 33
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=97.71 E-value=6.3e-05 Score=59.32 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=36.8
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
|+|||+|.|+|++. . +.+.|..++++|+++.. |++++||++|-
T Consensus 1 ~iViKlGGs~l~~~---~-~~~~i~~~~~~i~~~~~-~~~iiiV~GgG 43 (221)
T cd04253 1 RIVISLGGSVLAPE---K-DADFIKEYANVLRKISD-GHKVAVVVGGG 43 (221)
T ss_pred CEEEEeccceeCCC---C-ChHHHHHHHHHHHHHhC-CCEEEEEECCC
Confidence 78999999988653 2 78899999999999876 88999998883
No 34
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=97.58 E-value=5e-05 Score=60.93 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=36.4
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+|||+|-|++++++ .+.+++++|+++++.|+++|+|+||+-+
T Consensus 2 ~ViK~GGs~l~~~~-------~~~~~~~~I~~~~~~g~~~vvV~sa~g~ 43 (244)
T cd04260 2 IVQKFGGTSVSTKE-------RREQVAKKVKQAVDEGYKPVVVVSAMGR 43 (244)
T ss_pred EEEEECchhcCCHH-------HHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 79999999998652 5799999999999999999999996544
No 35
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=97.58 E-value=9e-05 Score=58.49 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.2
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
++|||+|.++|+++ +..++++|+.|+..|.++|||+.|.
T Consensus 1 ~~ViK~GGs~l~~~---------~~~~~~~i~~l~~~g~~~VlVhggg 39 (231)
T TIGR00761 1 TIVIKIGGAAISDL---------LEAFASDIAFLRAVGIKPVIVHGGG 39 (231)
T ss_pred CEEEEEChHHHhcc---------HHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 58999999999742 7899999999999999999997764
No 36
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00018 Score=59.56 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=46.9
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc-cchHHHhhh
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT-SGAVAFGKQ 83 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS-SGAVaaG~~ 83 (131)
..+|||+|+|-+.|..+++-++|.+++..++++|.++.+.|+||-+|. -|-++-|..
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~ 61 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYI 61 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHH
Confidence 468999999999999765456999999999999999999999995554 555655543
No 37
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=97.47 E-value=0.00012 Score=57.03 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=38.2
Q ss_pred EEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 32 VVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 32 VIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
|||+|.|+|+++ +.+..++++|+.+++.|+++|||.||......
T Consensus 1 ViKiGGs~l~~~-------~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~ 44 (248)
T cd02115 1 VIKFGGSSVSSE-------ERLRNLARILVKLASEGGRVVVVHGAGPQITD 44 (248)
T ss_pred CEeeCccccCCH-------HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCH
Confidence 799999999854 47889999999999999999999999776654
No 38
>PRK07431 aspartate kinase; Provisional
Probab=96.90 E-value=0.0012 Score=59.10 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=35.5
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+.+|+|+|-+++. |.+.+..++++|+.+++.|++||+|.|
T Consensus 2 ~~iViKfGGss~~-------~~~~i~~~a~~I~~~~~~g~~vvvV~s 41 (587)
T PRK07431 2 ALIVQKFGGTSVG-------SVERIQAVAQRIARTKEAGNDVVVVVS 41 (587)
T ss_pred CeEEEEECchhcC-------CHHHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 5799999988884 356899999999999999999999998
No 39
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=96.65 E-value=0.0033 Score=51.31 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=34.9
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+.+|||+|-+++++++ .+..++++|+.|+..|.++|||-+|.
T Consensus 15 ~~~ViKlGGs~i~~~~-------~~~~~~~~i~~l~~~g~~~ViVhG~g 56 (279)
T cd04250 15 KTVVIKYGGNAMKDEE-------LKESFARDIVLLKYVGINPVVVHGGG 56 (279)
T ss_pred CEEEEEEChHHhcCcc-------HHHHHHHHHHHHHHCCCCEEEEcCCc
Confidence 6899999999988653 45678888889999999999998773
No 40
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=96.63 E-value=0.0042 Score=52.75 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=44.4
Q ss_pred eEEEEeCccccccCCC---CCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 30 RLVVKLGSAVITREDE---HGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~---~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
|||||+|-+.|...++ ...+...+...|++|++|.+.||||+||-.+-=-+|.
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~ 56 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGN 56 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHH
Confidence 7999999998886542 3578899999999999999999999999888744443
No 41
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=96.58 E-value=0.0033 Score=50.39 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=36.6
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
+|||+|-+++++++ .+..+++.|+.|++.|.++||| +|+-..+-..+
T Consensus 1 ~ViKlGGs~l~~~~-------~~~~~~~~i~~l~~~g~~~VlV-hG~g~~~~~~~ 47 (256)
T cd04238 1 VVIKYGGSAMKDEE-------LKEAFADDIVLLKQVGINPVIV-HGGGPEINELL 47 (256)
T ss_pred CEEEEChHHhcCcc-------HHHHHHHHHHHHHHCCCCEEEE-CCCcHHHHHHH
Confidence 59999999998753 5577889999999999999999 56545554433
No 42
>PRK12352 putative carbamate kinase; Reviewed
Probab=96.53 E-value=0.0056 Score=52.05 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=43.0
Q ss_pred CeEEEEeCccccccCCCCCCcH----HHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhh
Q psy11676 29 RRLVVKLGSAVITREDEHGLAL----GRLASIVEQVAECHLEGRECIMVTSGAVAFGKQK 84 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~----~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~ 84 (131)
|++|||+|-+.|.+++ ..... ..+..++++|+.|+..|+++|||--|-=-.|...
T Consensus 3 k~iVI~lGGnAl~~~~-~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l 61 (316)
T PRK12352 3 ELVVVAIGGNSIIKDN-ASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDL 61 (316)
T ss_pred cEEEEEEChHHhcCCC-CCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHH
Confidence 6999999999997653 22222 5789999999999999999999987765555443
No 43
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=96.41 E-value=0.0078 Score=51.38 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=42.0
Q ss_pred CeEEEEeCccccccCCCCCCcH---HHHHHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 29 RRLVVKLGSAVITREDEHGLAL---GRLASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~---~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
+||||++|-+-|.+.++..... ..+...|++|++|.+.||||+|+=.+-=-+|.
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~ 59 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGN 59 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHH
Confidence 7999999999888754323333 47889999999999999999999775544443
No 44
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=96.38 E-value=0.0054 Score=50.54 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=38.4
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHh
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG 81 (131)
.+++|||+|-|.|.++ .+..++++|+.|++.|+++|||--|.=.++
T Consensus 18 ~~~~VIKlGG~ai~~~--------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 18 GKTFVIAFGGEAVAHP--------NFDNIVHDIALLHSLGIRLVLVHGARPQID 63 (280)
T ss_pred CCEEEEEEChHHhcCc--------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHH
Confidence 4789999999988853 346899999999999999999998864444
No 45
>PLN02512 acetylglutamate kinase
Probab=96.29 E-value=0.0074 Score=50.48 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.+++|||+|.+++++++ ....++++|+.|+..|.++|||-.|
T Consensus 47 ~~tiVIKlGGs~i~d~~-------~~~~~~~di~~l~~~g~~iVlVHGg 88 (309)
T PLN02512 47 GKTVVVKYGGAAMKDPE-------LKAGVIRDLVLLSCVGLRPVLVHGG 88 (309)
T ss_pred CCeEEEEECCeeccChh-------HHHHHHHHHHHHHHCCCCEEEEECC
Confidence 48899999999988653 4467888889999999999999765
No 46
>PRK05279 N-acetylglutamate synthase; Validated
Probab=96.22 E-value=0.008 Score=51.85 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=38.2
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHh
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG 81 (131)
.+++|||+|-|.|.++ .+..++.+|+.|+..|+++|||--|.=.++
T Consensus 25 ~~~~VIk~GG~~l~~~--------~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~ 70 (441)
T PRK05279 25 GKTFVIMLGGEAIAHG--------NFSNIVHDIALLHSLGIRLVLVHGARPQIE 70 (441)
T ss_pred CCEEEEEECchhccCh--------hHHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 4799999999999754 146899999999999999999998854444
No 47
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=96.20 E-value=0.0083 Score=49.49 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=34.8
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.+++|||+|.+++.++. ....++++|+.|+..|.++|||-=|
T Consensus 23 ~~~~VIk~gG~~~~~~~-------l~~~~~~di~~l~~~g~~~VlVHGg 64 (284)
T CHL00202 23 GRIMVIKYGGAAMKNLI-------LKADIIKDILFLSCIGLKIVVVHGG 64 (284)
T ss_pred CCeEEEEEChHHhcCcc-------hHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 47999999999876431 3467999999999999999999765
No 48
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=96.12 E-value=0.0085 Score=49.91 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=36.6
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
..+-+|||+|-+++.++ +.+.+|+++|+-|+.-|.++|||==|
T Consensus 34 ~~~f~VIK~GG~~~~~~-------~~~~~l~~dla~L~~lGl~~VlVHGg 76 (271)
T cd04236 34 WPAFAVLEVDHSVFRSL-------EMVQSLSFGLAFLQRMDMKLLVVMGL 76 (271)
T ss_pred CCCEEEEEEChhhhcCc-------hhHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45779999999999754 25789999999999999999999654
No 49
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=95.62 E-value=0.018 Score=49.64 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=35.6
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+.+|||+|-|++.+++ + ..++++|+.|+..|.++|||-=|.
T Consensus 17 ~~~~ViK~GG~~~~~~~-----~---~~~~~~i~~l~~~g~~~vlVHGgg 58 (429)
T TIGR01890 17 GKTFVVGLGGELVEGGN-----L---GNIVADIALLHSLGVRLVLVHGAR 58 (429)
T ss_pred CCEEEEEEChhhccCcc-----H---HHHHHHHHHHHHCCCcEEEEcCCC
Confidence 47999999999997542 2 379999999999999999998775
No 50
>PRK12686 carbamate kinase; Reviewed
Probab=95.55 E-value=0.025 Score=48.17 Aligned_cols=58 Identities=12% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCeEEEEeCccccccCCCC-CCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 28 ARRLVVKLGSAVITREDEH-GLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~-~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
+++||||+|-|-|.+++.. ..-...+...|++|+.|.+.||+||+|=.+-=-+|.-.+
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~ 60 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLL 60 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence 5799999999999875411 122345688999999999999999999998888886555
No 51
>PRK12354 carbamate kinase; Reviewed
Probab=95.24 E-value=0.042 Score=46.86 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=38.8
Q ss_pred CeEEEEeCccccccCCCCCCcH----HHHHHHHHHHHHHHhCCCeEEEEccchHHHh
Q psy11676 29 RRLVVKLGSAVITREDEHGLAL----GRLASIVEQVAECHLEGRECIMVTSGAVAFG 81 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~----~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG 81 (131)
.|||||+|-|.|.+.+ ..... +.+...|++|++|.+ ||+|||+-.+-=-+|
T Consensus 1 ~~iVialGGnal~~~~-~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG 55 (307)
T PRK12354 1 MRIVVALGGNALLRRG-EPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVG 55 (307)
T ss_pred CeEEEEeccHHhCCCC-CCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHh
Confidence 4899999888888754 23333 367889999999999 999999876544456
No 52
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=94.94 E-value=0.035 Score=49.21 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=36.4
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+.+|.|+|-+++.+. +.+...++-|++..+.|++||+|+|..
T Consensus 2 ~~iV~KFGGTSva~~-------e~i~~va~iv~~~~~~g~~vVVVvSA~ 43 (447)
T COG0527 2 RLIVQKFGGTSVADA-------ERILRVADIVKEDSEEGVKVVVVVSAM 43 (447)
T ss_pred ceEEEEeCCcccCCH-------HHHHHHHHHHHhhhhcCCcEEEEECCC
Confidence 379999998888854 478889999999889999999999986
No 53
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=94.87 E-value=0.037 Score=44.69 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=30.6
Q ss_pred EEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 32 VVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 32 VIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|||+|.|++.+ .+..++++|+.|+..|.++|||-=|
T Consensus 2 ViKiGG~~~~~---------~l~~~~~di~~l~~~g~~~VlVHGg 37 (248)
T cd04252 2 VIKVGGAIIED---------DLDELAASLSFLQHVGLYPIVVHGA 37 (248)
T ss_pred EEEEChhhhhc---------cHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 89999998864 1578999999999999999988655
No 54
>PRK04531 acetylglutamate kinase; Provisional
Probab=94.53 E-value=0.056 Score=47.20 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=34.0
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.+.+|||+|.+++.+. +..++++|+.|+..|.++|||-=|
T Consensus 36 ~~~~VIKiGG~~l~~~---------~~~l~~dla~L~~~G~~~VlVHGg 75 (398)
T PRK04531 36 ERFAVIKVGGAVLRDD---------LEALASSLSFLQEVGLTPIVVHGA 75 (398)
T ss_pred CcEEEEEEChHHhhcC---------HHHHHHHHHHHHHCCCcEEEEECC
Confidence 4889999999998621 378999999999999999999544
No 55
>PLN02825 amino-acid N-acetyltransferase
Probab=94.40 E-value=0.07 Score=48.24 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=35.4
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.-|++|||+|-+.+.++ .+.+++.+|+.|+..|.++|||==|
T Consensus 16 rgktfVIk~gG~~l~~~--------~~~~l~~DialL~~lGi~~VlVHGg 57 (515)
T PLN02825 16 RGSTFVVVISGEVVAGP--------HLDNILQDISLLHGLGIKFVLVPGT 57 (515)
T ss_pred CCCEEEEEECchhhcCc--------hHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 36899999998888632 3578999999999999999999644
No 56
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=94.33 E-value=0.059 Score=43.91 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=34.6
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
.+|||+|.+++.++. .++.+|+.|++.|.++|||-.| =..+...+
T Consensus 1 ~~ViK~GG~~l~~~~----------~~~~~i~~l~~~g~~~VlVHGg-g~~i~~~~ 45 (268)
T PRK14058 1 MIVVKIGGSVGIDPE----------DALIDVASLWADGERVVLVHGG-SDEVNELL 45 (268)
T ss_pred CEEEEEChHHhhCcH----------HHHHHHHHHHHCCCCEEEEeCC-HHHHHHHH
Confidence 389999999987531 4699999999999999999855 44444444
No 57
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=94.11 E-value=0.11 Score=43.61 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=36.2
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.|.+|||+|-+.+.+++ .+.+++++|+.|+..|.+.|+|==|
T Consensus 2 ~k~~VIK~GG~~~~~~~-------l~~~~~~di~lL~~~G~~~VvVHGg 43 (265)
T COG0548 2 GKTIVIKLGGSAMEDEN-------LLEAFASDIALLKSVGIRPVVVHGG 43 (265)
T ss_pred CceEEEEECceeecCch-------HHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 57899999999888653 5689999999999999999998655
No 58
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=93.69 E-value=0.099 Score=41.89 Aligned_cols=39 Identities=31% Similarity=0.590 Sum_probs=30.1
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
+|||+|-|+++++ ..+..++++|+.+.. .|.++|||+=|
T Consensus 1 ~ViK~GGs~l~~~-------~~~~~~~~~i~~~~~~~~~~iVlVhGg 40 (252)
T cd04249 1 LVIKLGGALLETE-------AALEQLFSALSEYQQQHNRQLVIVHGG 40 (252)
T ss_pred CEEEEChHHhcCh-------hhHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 5999998888643 357889999998854 57788888654
No 59
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=92.59 E-value=0.15 Score=42.61 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=28.5
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|+|.|+|.++|.++ +.+..+++-|.+. ..++++++|-|.
T Consensus 1 ~~V~KFGGtSv~~~-------~~~~~v~~iI~~~-~~~~~~vvVvSA 39 (298)
T cd04244 1 RLVMKFGGTSVGSA-------ERIRHVADLVGTY-AEGHEVVVVVSA 39 (298)
T ss_pred CEEEEECcccCCCH-------HHHHHHHHHHHHh-hcCCCEEEEEeC
Confidence 68999998888754 3667777777765 457777777774
No 60
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.89 E-value=0.22 Score=43.13 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.6
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+|+|+|-+++.+. +.+..+++.|......|+++++|-|+.
T Consensus 2 ~~V~KFGGssv~~~-------~~~~~v~~~i~~~~~~~~~~vvVvSA~ 42 (441)
T TIGR00657 2 LIVQKFGGTSVGNA-------ERIRRVAKIVLKEKKKGNQVVVVVSAM 42 (441)
T ss_pred CEEEEeCcccCCCH-------HHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 47999998888864 377888999998888898888888864
No 61
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=89.98 E-value=0.35 Score=39.21 Aligned_cols=41 Identities=29% Similarity=0.609 Sum_probs=29.5
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
+|||+|-|++++ +..++++|+.| |.++|||.=| =..+...+
T Consensus 1 ~VIKlGGs~l~~----------~~~~~~~i~~l---g~~~VlVHGg-g~~i~~~~ 41 (257)
T cd04251 1 IVVKIGGSVVSD----------LDKVIDDIANF---GERLIVVHGG-GNYVNEYL 41 (257)
T ss_pred CEEEEChHHhhC----------hHHHHHHHHHc---CCCEEEECCC-HHHHHHHH
Confidence 599999999883 14688888888 8898888654 34443333
No 62
>PRK06291 aspartate kinase; Provisional
Probab=87.86 E-value=0.74 Score=40.47 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=30.0
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++|.|+|.+++.+. +.+..+++-|.+-+..|+++++|-|.
T Consensus 2 ~~V~KFGGtSv~~~-------~~~~~v~~ii~~~~~~~~~~vvVvSA 41 (465)
T PRK06291 2 RLVMKFGGTSVGDG-------ERIRHVAKLVKRYRSEGNEVVVVVSA 41 (465)
T ss_pred cEEEEeCcccCCCH-------HHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 47999998888754 36777888787766678777777764
No 63
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=86.53 E-value=0.96 Score=37.93 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|.|+|-+++.+. +.+..+++-|..-.+.|.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~-------~~~~~v~~ii~~~~~~~~~~vVVVSA 40 (295)
T cd04259 2 VVLKFGGTSVSSR-------ARWDTIAKLAQKHLNTGGQPLIVCSA 40 (295)
T ss_pred EEEEeCccccCCH-------HHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 5899998888765 36677777776544567666666664
No 64
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=85.30 E-value=1.1 Score=37.69 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=34.1
Q ss_pred EEEEeCccccccCCCC-CCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhh
Q psy11676 31 LVVKLGSAVITREDEH-GLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~-~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~ 83 (131)
+|+|+|-|+||+.+.. .++.+.+..+|.+|+. .+.+=.+|==|+=..|+-
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~---~~~~~livVHGgGSFGHp 53 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN---GKPEKLIVVHGGGSFGHP 53 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc---CCcccEEEEecCccccCH
Confidence 8999999999986521 2677889999999986 333222244455555543
No 65
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=83.46 E-value=1.5 Score=36.76 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=26.6
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.|.|+|-+++.+. +.+..+++-|.... ++.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~-------~~i~~v~~iI~~~~-~~~~~vvVvSA 39 (294)
T cd04257 2 KVLKFGGTSLANA-------ERIRRVADIILNAA-KQEQVAVVVSA 39 (294)
T ss_pred EEEEeCccccCCH-------HHHHHHHHHHHhhc-cCCCEEEEEcC
Confidence 4899998888854 36677777777554 45666666663
No 66
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=83.22 E-value=1.5 Score=41.57 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=31.2
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++.+|.|+|-+++.+. +.+..+++-|..-.+.|.++++|-|.
T Consensus 7 ~~~~V~KFGGtSv~~~-------~~~~~v~~ii~~~~~~~~~~vvVvSA 48 (861)
T PRK08961 7 DRWVVLKFGGTSVSRR-------HRWDTIAKIVRKRLAEGGRVLVVVSA 48 (861)
T ss_pred CCcEEEEECccccCCH-------HHHHHHHHHHHhhcccCCCEEEEEeC
Confidence 4667999998888765 35778888887665667777777764
No 67
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=81.34 E-value=2.7 Score=36.32 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=35.4
Q ss_pred CeEEEEeCccccccCCCCCCc----HHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 29 RRLVVKLGSAVITREDEHGLA----LGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~----~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
+||||=+|-+-|-..+. .++ ...+..-+++|+.|.++|||+|+.=
T Consensus 1 ~~iVvALGGNAll~~g~-~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitH 49 (312)
T COG0549 1 KRIVVALGGNALLQRGE-PLTAEAQYEAVKITAEQIADLIASGYEVVITH 49 (312)
T ss_pred CeEEEEecchhhcCCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 58999998888886542 223 4557788999999999999998864
No 68
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=80.51 E-value=1.9 Score=33.98 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=22.7
Q ss_pred EEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 32 VVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 32 VIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
|||||-|++.+ +..|.+.+..+. |++|++|.=|--
T Consensus 1 vvKiGGsl~~~----------~~~~~~~l~~~~--~~~v~iV~GGG~ 35 (203)
T cd04240 1 VVKIGGSLIRE----------AVRLLRWLKTLS--GGGVVIVPGGGP 35 (203)
T ss_pred CEEEccccccc----------HHHHHHHHHhcc--CCCEEEEcCCcH
Confidence 79999887633 223333444332 899999998743
No 69
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=79.81 E-value=2.2 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=25.6
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.|.|+|.+++.+. +.+..+++-|..-. +.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~-------~~i~~v~~iI~~~~--~~~~vvVvSA 38 (293)
T cd04243 2 KVLKFGGTSVASA-------ERIRRVADIIKSRA--SSPVLVVVSA 38 (293)
T ss_pred EEEEECccccCCH-------HHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 5899998888865 35666676666443 6667777664
No 70
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=77.70 E-value=3.1 Score=35.66 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=26.2
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|+|+|-+++.+. +..+++-|..+.+ +.++++|.|+
T Consensus 2 ~V~KFGGsSv~~~---------~~~v~~ii~~~~~-~~~~vVVVSA 37 (327)
T TIGR02078 2 IVVKFGGSSVRYA---------FEEALELVKSLSE-EKRVIVVVSA 37 (327)
T ss_pred EEEEECCcchHHH---------HHHHHHHHHHHhc-CCCEEEEeCC
Confidence 6999997777731 5666666665544 7789988888
No 71
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=77.40 E-value=4.4 Score=32.17 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHH-----------HHHHHhCCCeEEEEccchH
Q psy11676 48 LALGRLASIVEQ-----------VAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 48 l~~~~l~~l~~q-----------Ia~L~~~G~eVILVSSGAV 78 (131)
++...+.+++++ ++.++++|++|+|||.|-.
T Consensus 63 ~~~~~v~~~~~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~ 104 (212)
T COG0560 63 LPVEVLEEVREEFLRLTPGAEELVAALKAAGAKVVIISGGFT 104 (212)
T ss_pred CCHHHHHHHHHhcCcCCccHHHHHHHHHHCCCEEEEEcCChH
Confidence 455555555555 7888999999999999954
No 72
>PRK09411 carbamate kinase; Reviewed
Probab=74.87 E-value=7.8 Score=33.12 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=37.9
Q ss_pred CeEEEEeCccccccCCCCCCc--H--HHHHHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 29 RRLVVKLGSAVITREDEHGLA--L--GRLASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~--~--~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
+||||=+|-+-|-+.++ ... . ..+..-|++|+.|.++ |+|||+-.=-=-+|.
T Consensus 2 ~~iVvAlGGNAl~~~g~-~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~ 57 (297)
T PRK09411 2 KTLVVALGGNALLQRGE-ALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGL 57 (297)
T ss_pred CeEEEEcCchhhcCCCC-CcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHH
Confidence 69999999988886542 232 2 2567889999999998 999987654334444
No 73
>PRK08373 aspartate kinase; Validated
Probab=73.80 E-value=5.7 Score=34.19 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=25.5
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+.+|.|+|-+++.+ .+...++-|... .+|+++++|-|.
T Consensus 4 ~m~V~KFGGsSv~~---------~~~~v~~ii~~~-~~~~~vvVVVSA 41 (341)
T PRK08373 4 KMIVVKFGGSSVRY---------DFEEALELVKYL-SEENEVVVVVSA 41 (341)
T ss_pred CCEEEEECCcchHh---------HHHHHHHHHHHH-hcCCCEEEEecC
Confidence 45799998777743 245566666644 457788877775
No 74
>PRK09084 aspartate kinase III; Validated
Probab=71.71 E-value=4.4 Score=35.66 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=25.2
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|.|+|-+++.+. +.+..+++-|.+ .|.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~-------e~i~~v~~ii~~---~~~~~vvVVSA 37 (448)
T PRK09084 2 VVAKFGGTSVADF-------DAMNRSADIVLS---NPNTRLVVLSA 37 (448)
T ss_pred EEEEECccCcCCH-------HHHHHHHHHHhc---CCCCEEEEEcC
Confidence 6899998888765 366666666654 46777776665
No 75
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=70.20 E-value=4.5 Score=33.98 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=24.1
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|.|+|-+++.+.+ .+..+++-|.. .+.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~~-------~i~~v~~ii~~---~~~~~vVVVSA 37 (292)
T cd04258 2 VVAKFGGTSVADYA-------AMLRCAAIVKS---DASVRLVVVSA 37 (292)
T ss_pred EEEEECccccCCHH-------HHHHHHHHHhc---cCCCEEEEEeC
Confidence 68999988888653 55566666653 25666666664
No 76
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=67.86 E-value=6 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCeEEEEccch
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGA 77 (131)
...+.+..|+++|++++|||+|.
T Consensus 84 g~~e~l~~l~~~g~~~~IvS~~~ 106 (201)
T TIGR01491 84 YAEELVRWLKEKGLKTAIVSGGI 106 (201)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCc
Confidence 45677889999999999999985
No 77
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=67.74 E-value=6.8 Score=37.38 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=28.0
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++.+|.|+|-+++.+.+ .+..+++-|..-.+.+ .||+||.
T Consensus 9 ~M~~~V~KFGGtSv~~~e-------~i~~v~~iI~~~~~~~-~vVVVSA 49 (810)
T PRK09466 9 AMGRQLHKFGGSSLADAK-------CYRRVAGILAEYSQPD-DLVVVSA 49 (810)
T ss_pred cceeEEEEECccccCCHH-------HHHHHHHHHhhhccCC-EEEEEcC
Confidence 345789999988888653 6777777776554444 5666664
No 78
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=66.83 E-value=13 Score=32.10 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=36.5
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
.-.+-||.-+-+.++++++ .+.. +-..+.+.+.+|+++|+.+.|+|||.-
T Consensus 126 ~~~~~i~~D~D~TL~~~~~--~v~i-rdp~V~EtL~eLkekGikLaIvTNg~R 175 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE--PVRI-RDPFVYDSLDELKERGCVLVLWSYGNR 175 (303)
T ss_pred eeccEEEEecCCCccCCCC--cccc-CChhHHHHHHHHHHCCCEEEEEcCCCh
Confidence 4467888999888888653 2311 113566788899999999999999953
No 79
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=66.80 E-value=6.9 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
..++.+.+..|++.|+++++||++.
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~ 50 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKS 50 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCch
Confidence 3567788888889999999999986
No 80
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=65.74 E-value=15 Score=27.26 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=29.1
Q ss_pred CeEEEEeCccccccCCCCCCc-HHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 29 RRLVVKLGSAVITREDEHGLA-LGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~-~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
|.|++=+--.++.+.. +... ........+.+.+|++.|++|+++|.=.
T Consensus 2 K~i~~DiDGTL~~~~~-~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTEN-GDYANVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCCC-CcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 5677777322333221 1111 1133566677888889999999999654
No 81
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=64.93 E-value=56 Score=27.07 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=54.6
Q ss_pred HhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccccccCChHHHhhhccC
Q psy11676 23 GQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPK 102 (131)
Q Consensus 23 ~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~l~~~~~~qalaa~ 102 (131)
..+...+-+|| .|++....+ +.++......|-..+. |.++|+.-.|+-||.- +. ......-.+++.+-+.
T Consensus 40 ~~~p~~d~ivV-LGa~~~~~~--g~ps~~l~~Rl~~A~~-LYk~gk~~~ilvSGg~--~~----~~~~Ea~~M~~yLi~~ 109 (239)
T PRK10834 40 QDLPYRQVGVV-LGTAKYYRT--GVINQYYRYRIQGAIN-AYNSGKVNYLLLSGDN--AL----QSYNEPMTMRKDLIAA 109 (239)
T ss_pred hhCCCCCEEEE-cCCcccCCC--CCcCHHHHHHHHHHHH-HHHhCCCCEEEEeCCC--CC----CCCCHHHHHHHHHHHc
Confidence 34556666777 999865443 3566655566665555 6666765444455531 11 1222223577777777
Q ss_pred CCc---ccccccCcchhhhHHhHHHHh
Q psy11676 103 DHS---RSNHFDSENPKTNIYTHIILM 126 (131)
Q Consensus 103 ~ll---T~~Df~~r~r~~Na~nTi~~~ 126 (131)
|.- -.-|..++.-|.|+.++-.++
T Consensus 110 GVp~e~Ii~e~~s~nT~en~~~a~~i~ 136 (239)
T PRK10834 110 GVDPSDIVLDYAGFRTLDSIVRTRKVF 136 (239)
T ss_pred CCCHHHEEecCCCCCHHHHHHHHHHHh
Confidence 765 233445666677887776654
No 82
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=63.36 E-value=9.8 Score=31.92 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=23.6
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.|.|+|-+++.+.+ .+..+++-|.. .+.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~~-------~i~~v~~ii~~---~~~~~vvVvSA 37 (288)
T cd04245 2 KVVKFGGSSLASAE-------QFQKVKAIVKA---DPERKIVVVSA 37 (288)
T ss_pred EEEEECcCccCCHH-------HHHHHHHHHHh---cCCCEEEEEcC
Confidence 48999988887653 55666666652 35566666664
No 83
>PLN03034 phosphoglycerate kinase; Provisional
Probab=62.67 E-value=23 Score=32.30 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=42.6
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
-+.||+.|.+=-|+-.++++.=.|..+|.+..-.|..|.++|-+|||+|-
T Consensus 90 l~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~~~gakvVl~SH 139 (481)
T PLN03034 90 LKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLISNGAKVILSSH 139 (481)
T ss_pred cCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHHHCCCeEEEEEe
Confidence 35799999999999886542236899999999999999999999999975
No 84
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=62.40 E-value=7.7 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCeEEEEccch
Q psy11676 58 EQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 58 ~qIa~L~~~G~eVILVSSGA 77 (131)
+.|..++++|++|+|||+|-
T Consensus 96 e~i~~~~~~~~~v~IvS~~~ 115 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSP 115 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEECCCc
Confidence 77888899999999999994
No 85
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=61.23 E-value=41 Score=25.00 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=38.2
Q ss_pred cCCeEEEEeCccccccCCC-CCCcH-HHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 27 YARRLVVKLGSAVITREDE-HGLAL-GRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~-~~l~~-~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+...|+|-+|+|=+..... ...+. .+..++.+-|..+++.|..+||+|+..
T Consensus 65 ~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~~ 117 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPVT 117 (198)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 5788999999998775320 01233 355778888888999999999999875
No 86
>PLN02282 phosphoglycerate kinase
Probab=59.83 E-value=28 Score=30.94 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=42.4
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
-+.||++|.+=-|+=.++++.=.|..+|.+....|..|.++|-+|||+|-
T Consensus 15 ~~gK~VlvRvD~NvPi~~~g~I~dd~RI~a~lpTI~~l~~~gakvVl~SH 64 (401)
T PLN02282 15 LKGKRVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGHGARVILCSH 64 (401)
T ss_pred ccCCEEEEEeecCCccCCCCcccCcHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 36799999999998875432236889999999999999999999999975
No 87
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=59.42 E-value=22 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
.++...++|......+.+.+.++.++|.-|++||
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~s 184 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4555577999988999999999988888888876
No 88
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=58.46 E-value=25 Score=24.41 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 50 LGRLASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
...+.-++.--.+|+++||||.++|+....-
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~ 39 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPPDFRE 39 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETGGGHH
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeeccccee
Confidence 3445556666778889999999999987543
No 89
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=57.09 E-value=11 Score=31.88 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=22.6
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|.|+|-+++.+. . ..+++.|..-..++.++++|-|.
T Consensus 3 ~V~KFGGtSv~~~------~---~~v~~~i~~~~~~~~~~vVVvSA 39 (306)
T cd04247 3 VVQKFGGTSVGKF------P---DNIADDIVKAYLKGNKVAVVCSA 39 (306)
T ss_pred EEEEeCchhhccH------H---HHHHHHHHhhhccCCceEEEEec
Confidence 6899998878753 1 34454444333456666666664
No 90
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=56.77 E-value=18 Score=25.92 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccc-hHHHhhhhc
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSG-AVAFGKQKL 85 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSG-AVaaG~~~L 85 (131)
....+.+.+..|+++|+.+.++||+ +-..-...+
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l 64 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL 64 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH
Confidence 4578899999999999999999999 654443333
No 91
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.51 E-value=19 Score=34.25 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+-|.+.+.+|.+.+..+++.+-.+...|..|++||=
T Consensus 846 ~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH 881 (908)
T COG0419 846 FLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH 881 (908)
T ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 334555779999999999999999999999999983
No 92
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=56.30 E-value=13 Score=29.69 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
.+..+.+.+|+++|+.+.++|||...+
T Consensus 98 pgv~e~L~~Lk~~G~~l~I~Sn~s~~~ 124 (220)
T TIGR01691 98 PDVPPALEAWLQLGLRLAVYSSGSVPA 124 (220)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 456778888999999999999998764
No 93
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=55.94 E-value=11 Score=31.87 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 47 GLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 47 ~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
.+.+.+|..+|+.|.+...-|-+|.|||=|-|
T Consensus 39 elaL~~L~~lc~~I~~vY~PGa~v~I~SDG~V 70 (278)
T PF05141_consen 39 ELALRRLNGLCQAIEAVYPPGAKVTIISDGHV 70 (278)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-EEEEEE--HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEecCcE
Confidence 47889999999999999999999999999987
No 94
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=55.42 E-value=15 Score=27.75 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
....+.+..|+++|+++.|||+|.-
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~ 112 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFD 112 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcH
Confidence 3566678888899999999999853
No 95
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=55.00 E-value=30 Score=26.30 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=29.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-||+||.=
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 195 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355557899999899999999998888888888753
No 96
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=54.77 E-value=27 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=29.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++++.|.-||+||-=
T Consensus 112 LlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 112 ILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3455556799999999999999998888888887754
No 97
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=54.73 E-value=26 Score=30.26 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=39.7
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
....-||+=+-+.++++++...+ +...+.+.+.+|++.|.-++|=|+|.-
T Consensus 120 ~~phVIVfDlD~TLItd~~~v~I---r~~~v~~sL~~Lk~~g~vLvLWSyG~~ 169 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGDVRI---RDPAVYDSLRELKEQGCVLVLWSYGNR 169 (297)
T ss_pred CCCcEEEEECCCcccccCCcccc---CChHHHHHHHHHHHcCCEEEEecCCCH
Confidence 45567999999999987642222 336788999999999999999999963
No 98
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=54.62 E-value=29 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-||+||.=
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 162 ADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355567799988889999999998888888887753
No 99
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=54.55 E-value=28 Score=26.62 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=29.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.+++++|.-|++||.=
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 173 LDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 355557799998899999999998888888888764
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=54.47 E-value=29 Score=26.38 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=28.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++|.-||+||.=
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~ 191 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 355567799998899999999998778888888754
No 101
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=54.21 E-value=18 Score=31.85 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=34.3
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+.||++|.+=-++-.. ++.-.|..+|.+.+..|..|.++|-+|||+|.=
T Consensus 8 ~gK~VlvRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~l~~~gakvVl~sH~ 56 (384)
T PF00162_consen 8 KGKRVLVRVDFNVPIK-NGKITDDTRIRAALPTIKYLLEKGAKVVLMSHL 56 (384)
T ss_dssp TTEEEEEEE-----EE-TTEES-THHHHHHHHHHHHHHHTTEEEEEE---
T ss_pred CCCEEEEEeCCCCCcC-CCcCCCcchHHHHHHHHHHHHhcCCeEEEEecc
Confidence 5689999998888883 323368889999999999999999999999863
No 102
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.15 E-value=33 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=28.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|.++...++|...-..+.+.+.++.++|.-||++|.
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 345555779999989999999999888877777774
No 103
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=53.79 E-value=30 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-||+||.
T Consensus 153 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 187 (204)
T PRK13538 153 LDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187 (204)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 34445679999999999999999888888888775
No 104
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=53.68 E-value=14 Score=28.38 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
.+.+.+..|+++|+++.|||+|--
T Consensus 78 G~~e~l~~l~~~g~~~~IvS~~~~ 101 (219)
T PRK09552 78 GFHEFVQFVKENNIPFYVVSGGMD 101 (219)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcH
Confidence 455677778899999999999963
No 105
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=53.60 E-value=13 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.8
Q ss_pred cHHHHH-HHHHHHHHHHhCCCeEEEEcc
Q psy11676 49 ALGRLA-SIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 49 ~~~~l~-~l~~qIa~L~~~G~eVILVSS 75 (131)
|..++. .+.+.|++|++.||.+||||-
T Consensus 26 D~~~~~~~v~~~L~~l~~~Gy~IvIvTN 53 (159)
T PF08645_consen 26 DWKFFPPGVPEALRELHKKGYKIVIVTN 53 (159)
T ss_dssp GGEEC-TTHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhhcchhHHHHHHHHHhcCCeEEEEeC
Confidence 344555 588999999999999999995
No 106
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=53.22 E-value=30 Score=26.70 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=28.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-||+||.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH 202 (243)
T TIGR01978 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202 (243)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEe
Confidence 35555679999999999999999888888888875
No 107
>PLN02551 aspartokinase
Probab=52.92 E-value=18 Score=32.82 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=25.9
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.+.-.+|.|+|-+++.+. +.|..+++-|..-. +..+++|-|
T Consensus 49 ~~~~~~V~KFGGtSv~~~-------e~i~~v~~iI~~~~--~~~~vVVvS 89 (521)
T PLN02551 49 EKQLTVVMKFGGSSVASA-------ERMREVADLILSFP--DERPVVVLS 89 (521)
T ss_pred ccCceEEEEECCCccCCH-------HHHHHHHHHHHhcC--CCCEEEEEc
Confidence 344567999998888765 36677777776532 233444444
No 108
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=52.37 E-value=33 Score=25.84 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.++...++|......+.+.+.++.++|.-||+||.=.
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 4555577999988999999999888888888888643
No 109
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=52.29 E-value=10 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.472 Sum_probs=23.7
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+||++| |++-+-|..|++.+. +.|++|++|-.
T Consensus 4 LlTNDD--Gi~a~Gi~aL~~~L~---~~g~~V~VvAP 35 (196)
T PF01975_consen 4 LLTNDD--GIDAPGIRALAKALS---ALGHDVVVVAP 35 (196)
T ss_dssp EEE-SS---TTSHHHHHHHHHHT---TTSSEEEEEEE
T ss_pred EEEcCC--CCCCHHHHHHHHHHH---hcCCeEEEEeC
Confidence 467765 588889999988875 44899999963
No 110
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=52.25 E-value=46 Score=29.49 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=42.1
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-+.|+++|.+=-|+-.++ +.=.|..+|.+-...|..|.++|-+|||+|.=
T Consensus 9 ~~gK~VlvRvD~NvPi~~-g~I~dd~RI~~~lpTI~~l~~~gakvvl~sH~ 58 (389)
T PRK00073 9 LKGKRVLVRVDFNVPVKD-GKITDDTRIRAALPTIKYLLEKGAKVILLSHL 58 (389)
T ss_pred cCCCEEEEEeccCCCCcC-CcCCChHhHHHHHHHHHHHHHCCCeEEEEEec
Confidence 357999999999987754 23358999999999999999999999999864
No 111
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=52.20 E-value=29 Score=26.84 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.7
Q ss_pred cccCCCCCCcHHHHH-HHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLA-SIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~-~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|..... .+.+.+.++.++ |..|++||--
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 445555679998888 899999999877 7788888753
No 112
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=52.17 E-value=33 Score=25.92 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=28.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++|.-||+||.
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH 192 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTH 192 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35556789998888999999999888887777775
No 113
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=51.99 E-value=32 Score=29.62 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=40.9
Q ss_pred hccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 25 LKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 25 l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
..-.+-||.=+=+.+++++..-.+.. ..+.+.+.+|+++|+.+.|+|||.-.--...|.
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~~v~ird---PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEEPVRIRD---PRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred cccceEEEEecCCCCcCCCCccccCC---HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 45677889999878888753111322 356778899999999999999986543333443
No 114
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=51.73 E-value=17 Score=30.21 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=27.2
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
+||++| |++-+-|..|++.+.++.+.|.+|++|-
T Consensus 4 LlTNDD--GI~a~Gl~aL~~~l~~~~~~~~~V~VVA 37 (261)
T PRK13931 4 LITNDD--GINAPGLEVLEQIATELAGPDGEVWTVA 37 (261)
T ss_pred EEEcCC--CCCCHhHHHHHHHHHHhccCCCeEEEEe
Confidence 467765 5999999999999988765567998885
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=51.67 E-value=35 Score=25.79 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=28.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-||+||.=
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~ 195 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 355557799988889999999998788888888753
No 116
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=51.37 E-value=36 Score=25.66 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.+.|.-||++|.=
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~ 194 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 55556799988889999999998888888888754
No 117
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=51.35 E-value=36 Score=25.73 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=29.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++.++|.-||+||.=
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3455557899988889999999998888888888753
No 118
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=51.06 E-value=35 Score=26.12 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=29.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||++|.=
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35555779999989999999999886 8888888764
No 119
>PRK05925 aspartate kinase; Provisional
Probab=50.94 E-value=22 Score=31.48 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=23.3
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
..+|.|+|-++|.+.+ .+..+++-|.. ..++++|-|.
T Consensus 2 ~~~V~KFGGtSv~~~e-------~i~~v~~ii~~----~~~~vVVvSA 38 (440)
T PRK05925 2 APLVYKFGGTSLGTAE-------SIRRVCDIICK----EKPSFVVVSA 38 (440)
T ss_pred CcEEEEECccccCCHH-------HHHHHHHHHhc----CCCEEEEECC
Confidence 3479999988888653 55666666653 2445555554
No 120
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=50.86 E-value=38 Score=25.04 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=28.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|.++...++|......+.+.+.++.++|.-||++|.
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 140 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 345555679999989999999999887887777764
No 121
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=50.77 E-value=37 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=27.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++...++|......+.+.+.++.++|.-||+||.
T Consensus 152 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 185 (200)
T PRK13540 152 DEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185 (200)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5445679999999999999998888888888774
No 122
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=50.66 E-value=33 Score=28.43 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++++.|.-||+||-=
T Consensus 188 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 3455567899998899999999998889888888765
No 123
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=50.60 E-value=46 Score=31.37 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=42.3
Q ss_pred ccCCeEEEEeCccccccCCCCC-CcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 26 KYARRLVVKLGSAVITREDEHG-LALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~-l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
-+.||++|.+=-++-.+++ |. .|..+|.+....|..|.++|-+|||+|-
T Consensus 11 ~~gK~VlvRvD~NvP~~~~-g~i~dd~RI~~~lpTI~~l~~~gakvvl~SH 60 (645)
T PRK13962 11 VKGKRVIVRVDFNVPLDEN-GNITDDTRIRAALPTIKYLLDHGAKVILVSH 60 (645)
T ss_pred cCCCEEEEEecCCCCcCCC-CcCCCcHhHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3579999999999988533 34 5889999999999999999999999985
No 124
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=50.47 E-value=20 Score=26.03 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
...+.+.+..|+++|+.+.++|++.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCC
Confidence 3567788999999999999999975
No 125
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=50.37 E-value=38 Score=25.93 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++|.-||+||.=
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~ 183 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 355557899999899999999998888877777754
No 126
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.19 E-value=40 Score=25.49 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-|+++|-
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 45555679999888999999998887876666664
No 127
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=49.95 E-value=22 Score=25.61 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccch
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+.+.+..++++|+.++|||+|-
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~ 99 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGF 99 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCc
Confidence 45566777889999999999984
No 128
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.59 E-value=30 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=31.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|-.+| +|+|.+.+.-+++.|.+|++.|.-++++|==
T Consensus 168 LDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 168 LDEPD-SGLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred ecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 55555 7899999999999999999999999999864
No 129
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=49.50 E-value=37 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.+++++|.-||+||.-
T Consensus 162 llDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 162 VLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 4555556799988889999999998889988888875
No 130
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=49.45 E-value=24 Score=26.21 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCeEEEEccch
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGA 77 (131)
...+.+..++++|+.|+|||++-
T Consensus 91 ~~~~~l~~l~~~g~~v~ivS~s~ 113 (202)
T TIGR01490 91 EARDLIRWHKAEGHTIVLVSASL 113 (202)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 44555677788999999999874
No 131
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=49.36 E-value=39 Score=25.05 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=28.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++.++|.-|++||.=
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3455556799988888999999988788888888753
No 132
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=49.35 E-value=42 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=28.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|.++...++|......+.+.+.++.++|.-||+||.
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH 184 (208)
T cd03268 149 ILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184 (208)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345556779998888999999998888888888875
No 133
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=49.32 E-value=40 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=28.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++|.-||+||-
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH 201 (236)
T cd03219 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEH 201 (236)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 35556779998888999999998877887777775
No 134
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=49.28 E-value=31 Score=29.01 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=25.1
Q ss_pred CCcHHHHHHHH------------HHHHHHHhCCCeEEEEccchH
Q psy11676 47 GLALGRLASIV------------EQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 47 ~l~~~~l~~l~------------~qIa~L~~~G~eVILVSSGAV 78 (131)
+++.+.+..++ +.+..|++.|+.+.+||+|--
T Consensus 105 ~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~ 148 (277)
T TIGR01544 105 AFPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIG 148 (277)
T ss_pred CCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 45666665555 578899999999999999963
No 135
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=49.12 E-value=16 Score=30.99 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeEEEEccchHHH
Q psy11676 57 VEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 57 ~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
+.-+.+|++.|++||+|||=..+-
T Consensus 29 ~pv~~el~d~G~~Vi~~SSKT~aE 52 (274)
T COG3769 29 APVLLELKDAGVPVILCSSKTRAE 52 (274)
T ss_pred chHHHHHHHcCCeEEEeccchHHH
Confidence 344678899999999999987643
No 136
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=48.95 E-value=40 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=28.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++|.-|++||.=
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 162 DEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 55557899998889999999988888877777753
No 137
>PRK09034 aspartate kinase; Reviewed
Probab=48.88 E-value=21 Score=31.44 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=23.1
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|.|+|-+++.+. +.+..+++-|.. .+.++++|-|.
T Consensus 2 ~V~KFGGtSv~~~-------~~i~~v~~ii~~---~~~~~vvVVSA 37 (454)
T PRK09034 2 KVVKFGGSSLASA-------EQFKKVLNIVKS---DPERKIVVVSA 37 (454)
T ss_pred EEEEeCccccCCH-------HHHHHHHHHHhc---cCCCEEEEEcC
Confidence 5899998888754 356666666652 35556666553
No 138
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=48.68 E-value=20 Score=25.78 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
..+.+.+..|+++|+.+.+||++....
T Consensus 88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 88 PGVEPLLEALRARGKKLALLTNSPRDH 114 (183)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 345667888999999999999998644
No 139
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=48.63 E-value=77 Score=22.59 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=33.7
Q ss_pred cCCeEEEEeCccccccCCCCCCcH-HHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLAL-GRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~-~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+...++|=+|++=+... .+. .+...+.+-|..+++.|.+||+++..
T Consensus 64 ~pd~v~i~~G~ND~~~~----~~~~~~~~~l~~li~~~~~~~~~vil~~~~ 110 (177)
T cd01822 64 KPDLVILELGGNDGLRG----IPPDQTRANLRQMIETAQARGAPVLLVGMQ 110 (177)
T ss_pred CCCEEEEeccCcccccC----CCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 66889999999865432 333 34466777777888889999999753
No 140
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=48.40 E-value=39 Score=26.17 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=27.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++++.|.-||+||-
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH 203 (248)
T PRK09580 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203 (248)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34445679999889999999999888887777776
No 141
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=48.17 E-value=22 Score=26.51 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+..+.+.+..|+++|+.+.++|+..
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 4568889999999999999999886
No 142
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=48.10 E-value=43 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=28.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++|.-|++||.=
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 152 DEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55556799998899999999988888888887764
No 143
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=47.78 E-value=19 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEccch
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
..+.+.+..|+++|+.+.+||++.
T Consensus 45 pgv~e~L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 45 PEIPAKLQELDDEGYKIVIFTNQS 68 (166)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCc
Confidence 568899999999999999999975
No 144
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=47.64 E-value=24 Score=25.03 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+..+.+.+..|+++|+.+.+||++--.
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~ 92 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLR 92 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchH
Confidence 356788888999999999999998643
No 145
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=47.17 E-value=43 Score=26.11 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=28.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++...++|......+.+.+.++.+.|.-||+||-
T Consensus 176 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 176 DETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4445679999989999999999888888888875
No 146
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=46.87 E-value=24 Score=33.64 Aligned_cols=38 Identities=11% Similarity=0.316 Sum_probs=24.7
Q ss_pred EEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 31 LVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 31 IVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.|.|+|-+++.+. +.+..+++-|....+....||+||.
T Consensus 2 ~V~KFGGtSv~~~-------~~i~~v~~iI~~~~~~~~~vVVVSA 39 (819)
T PRK09436 2 RVLKFGGTSVANA-------ERFLRVADIIESNARQEQVAVVLSA 39 (819)
T ss_pred EEEEeCccccCCH-------HHHHHHHHHHHhhcccCCEEEEEcC
Confidence 4889987777754 3667777777765444445555554
No 147
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=46.86 E-value=90 Score=22.46 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=33.5
Q ss_pred cCCeEEEEeCccccccCCCC--CCcHHHH-HHHHHHHHHHHh--CCCeEEEEccchH
Q psy11676 27 YARRLVVKLGSAVITREDEH--GLALGRL-ASIVEQVAECHL--EGRECIMVTSGAV 78 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~--~l~~~~l-~~l~~qIa~L~~--~G~eVILVSSGAV 78 (131)
+.+.|+|-+|++=+.... . ..+.+.+ ..+..-|.++++ .|..|+++|..-+
T Consensus 63 ~pd~vii~~G~ND~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~ 118 (199)
T cd01838 63 QPDLVTIFFGANDAALPG-QPQHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPV 118 (199)
T ss_pred CceEEEEEecCccccCCC-CCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCC
Confidence 678999999999776532 1 1344433 344444555555 6899999987654
No 148
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=46.68 E-value=47 Score=25.21 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=27.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++...++|...-..+.+.+.++.++|.-+|+||-
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH 183 (201)
T cd03231 150 DEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183 (201)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5555679998889999999988888888888775
No 149
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=46.47 E-value=23 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+.+.+..|+++|+++.|||+|.-
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~ 97 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMD 97 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcH
Confidence 3456677788899999999999953
No 150
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=46.46 E-value=33 Score=27.14 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.|.++.+.|..||+||--
T Consensus 182 llDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 182 VLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred EEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 4555556799988888999999998879999999865
No 151
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=46.29 E-value=44 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=29.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.+.|.-||+||-=
T Consensus 177 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 55556799999899999999998888888888763
No 152
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=46.29 E-value=50 Score=24.64 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=28.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-+|++|.=
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355556799998899999999998778777777653
No 153
>PLN02954 phosphoserine phosphatase
Probab=46.15 E-value=24 Score=26.74 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEccch
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
..+.+.+..|+++|+.+.|||+|-
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~ 110 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGF 110 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCc
Confidence 456677888889999999999985
No 154
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=46.07 E-value=48 Score=25.18 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=28.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++|.-||++|.=
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 191 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55557899999899999999998878777777754
No 155
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=45.55 E-value=49 Score=24.80 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=27.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-||+||-
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 192 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34445679988888899999888877887777764
No 156
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=45.49 E-value=45 Score=25.37 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=27.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.|.++.++ |.-||+||.=
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5555679998888899999998876 7777777753
No 157
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=45.45 E-value=46 Score=25.63 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=29.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|.++...++|......+.+.+.++.++|.-||+||.
T Consensus 156 llDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH 191 (213)
T cd03279 156 FIDEGFGTLDPEALEAVATALELIRTENRMVGVISH 191 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 345555679998889999999999888888888875
No 158
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.16 E-value=45 Score=25.29 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=28.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-|+++|.=
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 35556779998889999999998774 8888887753
No 159
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=45.06 E-value=48 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-|+++|-=
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~ 183 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 455567899998899999999998888887777754
No 160
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=45.01 E-value=47 Score=26.59 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-||+||.=
T Consensus 166 lDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~ 201 (272)
T PRK15056 166 LDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201 (272)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 355556799998899999999998888888888754
No 161
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=44.97 E-value=65 Score=28.65 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=40.8
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+.||++|.+=-|+=.++ +.=.|..+|.+-...|..|.++|-+|||.|.=
T Consensus 7 ~gK~VlvRvD~NvPi~~-g~I~dd~RI~a~lpTI~~l~~~gakvvl~SHl 55 (397)
T cd00318 7 KGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEQGAKVVLLSHL 55 (397)
T ss_pred CCCEEEEEeccCCCCcC-CeECChHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 46899999998885543 23368899999999999999999999999863
No 162
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=44.91 E-value=49 Score=25.62 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=28.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+-+.++.++|.-||++|.=
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 355557899998899999999998888888877764
No 163
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=44.84 E-value=29 Score=24.06 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
.+.+.+.+|++.|+.+++||++.-..-...+
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l 111 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGSRERIERVL 111 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSEHHHHHHHH
T ss_pred hhhhhhhhcccccceeEEeecCCcccccccc
Confidence 4566788888899999999999754433333
No 164
>PRK10908 cell division protein FtsE; Provisional
Probab=44.41 E-value=52 Score=25.15 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=27.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-+++||.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35555679998888899999998877777777764
No 165
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=44.33 E-value=51 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ .|.-||+||-=
T Consensus 164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3555577999888899999999877 57878777753
No 166
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=44.26 E-value=50 Score=25.52 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=27.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++|.-||++|.=
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 55556799988889999999998888887777653
No 167
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=44.18 E-value=41 Score=23.84 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.8
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
++.++.+..+.+.+...|++.+..+.+.+.+|++.|
T Consensus 261 lliDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitT 296 (303)
T PF13304_consen 261 LLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITT 296 (303)
T ss_dssp EEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeC
Confidence 445655578999999999999988877788998765
No 168
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.97 E-value=49 Score=26.47 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=28.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.|.++.+.|.-||+||-=
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 204 (280)
T PRK13649 170 DEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204 (280)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55556799988899999999998878877777743
No 169
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=43.86 E-value=49 Score=26.00 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=27.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++...++|......+.+.+.++.++|.-||++|.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH 196 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQGKTVVTVLH 196 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5555789999989999999999877877777664
No 170
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=43.83 E-value=50 Score=24.62 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-+|++|--
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35555679998889999999999877 7777777643
No 171
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=43.78 E-value=54 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=28.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++|.-||++|.=
T Consensus 136 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 136 DEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 55556799988889999999998888888888763
No 172
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=43.43 E-value=55 Score=25.40 Aligned_cols=35 Identities=26% Similarity=0.197 Sum_probs=27.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++|.-|++||.=
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 200 (242)
T PRK11124 166 DEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200 (242)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 55556799998899999999998888777777654
No 173
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.32 E-value=50 Score=26.80 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=28.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.+++++|.-|++||.=
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd 203 (288)
T PRK13643 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203 (288)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 55557899988889999999998888888888765
No 174
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=43.28 E-value=24 Score=29.76 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
+-|+.-.+|-+.|+.|-+||||=-
T Consensus 60 ~Ra~~AielA~~G~~ValVSsGDp 83 (249)
T COG1010 60 ERAKEAIELAAEGRDVALVSSGDP 83 (249)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCc
Confidence 446666777789999999999943
No 175
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=43.15 E-value=48 Score=24.87 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHHHHHH--HHHHhCCCeEEEEccch
Q psy11676 50 LGRLASIVEQV--AECHLEGRECIMVTSGA 77 (131)
Q Consensus 50 ~~~l~~l~~qI--a~L~~~G~eVILVSSGA 77 (131)
......+++.+ .+..++|++|++++||=
T Consensus 57 ~~~~~~~~~~i~~~~~~~~g~~V~~l~~GD 86 (210)
T PF00590_consen 57 EESYDEIAEIIEAIEAAKEGKDVVVLVSGD 86 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESBS
T ss_pred hhhhhHHHHHHHHHHHHhccCCEEEeCCCC
Confidence 34567888888 78888899999999984
No 176
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.11 E-value=1.1e+02 Score=22.00 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=34.0
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHh--CCCeEEEEccch
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHL--EGRECIMVTSGA 77 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~--~G~eVILVSSGA 77 (131)
.+.+.|||=+|++=+.... .....+...+...|.++++ .+.+|++|+..-
T Consensus 55 ~~pd~Vii~~G~ND~~~~~--~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~ 106 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQ--LNASEYRQQLREFIKRLRQILPNASILLVGPPD 106 (189)
T ss_pred CCCCEEEEECCCcccccCC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCc
Confidence 4568899999999766432 1123344666666666666 588999998653
No 177
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=43.00 E-value=53 Score=25.38 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=28.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-||++|.=
T Consensus 137 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 137 LDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 344456799988889999999998888888888764
No 178
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.88 E-value=57 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=28.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+.|.-||+||.=
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~ 167 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 355556799988888999999988878877777753
No 179
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=42.76 E-value=41 Score=32.80 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=32.5
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++.+++.+++|...+..+.+.+..|++.|.-|++||-
T Consensus 979 l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH 1015 (1047)
T PRK10246 979 LFLDEGFGTLDSETLDTALDALDALNASGKTIGVISH 1015 (1047)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4556666789999999999999999999999999998
No 180
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=42.61 E-value=28 Score=24.32 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
...+.+.+..|++.|+++.++|.+.
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCc
Confidence 3567788899999999999999986
No 181
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=42.59 E-value=23 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.9
Q ss_pred HHHHHHhCCCeEEEEccchH
Q psy11676 59 QVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 59 qIa~L~~~G~eVILVSSGAV 78 (131)
.|.+|+++|+++.|||++.-
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~ 55 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKA 55 (154)
T ss_pred HHHHHHHCCCEEEEEECCCC
Confidence 68999999999999999863
No 182
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.34 E-value=54 Score=26.55 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.4
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-|++||-
T Consensus 169 LDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH 203 (287)
T PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203 (287)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45555789998888999999999888888888874
No 183
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=42.29 E-value=58 Score=24.94 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=27.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.+.|.-||+||-
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 191 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDH 191 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35555789999888899989888877877777765
No 184
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=42.21 E-value=56 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+-+.++.++|.-||++|.=
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 55556799988888999999988888888777754
No 185
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=42.18 E-value=54 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=27.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++|.-||++|-
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALH 195 (256)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35555679998889999999999887876666663
No 186
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=41.82 E-value=58 Score=26.58 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=29.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++.++|.-|+++|-=
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~ 194 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 3455567899998899999999998888877777743
No 187
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=41.76 E-value=33 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+.++++ +|.++|++|.+++++.
T Consensus 17 ~~~~l~~---~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 17 VVLNLAR---ALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHH---HHHHTT-EEEEEESS-
T ss_pred HHHHHHH---HHHHCCCEEEEEEcCC
Confidence 3344444 4557899999998874
No 188
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=41.52 E-value=1.2e+02 Score=21.94 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=36.8
Q ss_pred ccCCeEEEEeCccccccCCCCCCcH-HHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLAL-GRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~-~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
.+...|||=+|++=.... ..+. .+...+..-|.+++..+..|+++|..-.
T Consensus 66 ~~~d~vii~~G~ND~~~~---~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGGNDILRP---GTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEeccccccccC---CCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 467899999999866531 2333 3456778888888888999999998654
No 189
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.39 E-value=53 Score=25.36 Aligned_cols=36 Identities=28% Similarity=0.225 Sum_probs=28.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 35555789999989999999998874 8888887754
No 190
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.31 E-value=53 Score=25.27 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=27.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555779999889999999998764 8877777753
No 191
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.10 E-value=55 Score=24.88 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||++|.=
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 35555789999989999999999776 7777777653
No 192
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=41.06 E-value=52 Score=25.97 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=29.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|......+.+.|.++.++ |.-||++|.-
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345556789999999999999999764 8888888765
No 193
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=40.36 E-value=61 Score=25.06 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=28.4
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++++ .|.-||+||.=
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3555577999988999999999876 58888888764
No 194
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=40.02 E-value=30 Score=26.12 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+..+.+.+..|+++|+.+++||+.
T Consensus 31 ~pgv~e~L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 31 EKGVIPALLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCC
Confidence 366888999999999999999996
No 195
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.85 E-value=61 Score=26.00 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=29.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++|.-|++||.-
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~ 196 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 55557899999899999999998888889998865
No 196
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=39.67 E-value=32 Score=25.62 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
....+.+..|+++|+.+.++|+|....
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~ 121 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAM 121 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 355677888999999999999987543
No 197
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=39.63 E-value=70 Score=23.57 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=27.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
|.+.+ +.++. ...+.+.+|+++|+.+++.|.=....-...++
T Consensus 9 Ll~~~-~~i~~----~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 9 LLNSD-GKISP----ETIEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp TCSTT-SSSCH----HHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred eecCC-CeeCH----HHHHHHHhhcccceEEEEEccCcccccccccc
Confidence 44444 45665 44566677888999999998766554444443
No 198
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=39.54 E-value=62 Score=24.46 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=27.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||++|-=
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35555789999888999999998874 7777777653
No 199
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=39.53 E-value=63 Score=24.75 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=27.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-||++|.=
T Consensus 170 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 170 ADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35555679998888899999998765 7777777643
No 200
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=39.49 E-value=54 Score=25.30 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++. +|.-||++|.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh 196 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAH 196 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeC
Confidence 355556799998899999999887 7877777764
No 201
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=39.34 E-value=38 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEccch
Q psy11676 56 IVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSGA 77 (131)
+.+.+..|.++|++|.+++.+-
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~ 34 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRN 34 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 3455677888999999999954
No 202
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.25 E-value=63 Score=24.84 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++ |.-||+||.
T Consensus 164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 164 CDEATSALDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 35555789999989999999999876 777777764
No 203
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=39.14 E-value=65 Score=25.14 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=27.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|......+.+.+.+++++ |.-||++|.
T Consensus 177 lDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH 212 (255)
T PRK11300 177 LDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212 (255)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 35555789999889999999999876 776666664
No 204
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.03 E-value=60 Score=25.23 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 5555679998888999999999875 7777777653
No 205
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.99 E-value=52 Score=25.29 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=26.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.+ |.-||+||.
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh 194 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAH 194 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence 3554567999998999999999877 877777764
No 206
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.88 E-value=37 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+..-++.|..|+++|+.+++||-.+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns 40 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS 40 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC
Confidence 4456788999999999999999886
No 207
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=38.78 E-value=81 Score=28.28 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=40.6
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
-+.||++|.+==|+=.++ |.=+|..+|.+-.-.|..|.++|-.|||.|
T Consensus 12 ~~gK~VlvRvD~NvP~~d-G~I~dd~RI~a~lpTIk~l~~~ga~Vvl~S 59 (395)
T COG0126 12 LAGKRVLVRVDFNVPVDD-GKITDDTRIRAALPTIKYLLEKGAKVVLLS 59 (395)
T ss_pred ccCCEEEEEeccCCcccC-CeeCCcHHHHHhhHHHHHHHhCCCeEEEEe
Confidence 567999999999987765 333789999999999999999997788876
No 208
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.67 E-value=70 Score=23.75 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=26.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
++...++|......+.+.+.++.++ |.-+++||.
T Consensus 125 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 125 DEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5555679999989999999999887 666666664
No 209
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=38.64 E-value=48 Score=26.59 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+++.|.+..++|.+|+++++|=.
T Consensus 84 ~~~~~~~i~~~~~~G~~Vv~L~~GDP 109 (241)
T PRK05990 84 YDTSAEAVAAHLDAGRDVAVICEGDP 109 (241)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46788889998899999999999843
No 210
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=38.56 E-value=65 Score=26.62 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=31.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
+-|+...|+|......+.+-|..+.++|...||+||=..
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence 345556789999999999999999999877777777654
No 211
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=38.43 E-value=57 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 46 HGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 46 ~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+.++... .+.|.+|+++|+.|+++|-=...
T Consensus 19 ~~i~~~~----~~ai~~l~~~G~~~~iaTGR~~~ 48 (270)
T PRK10513 19 HTISPAV----KQAIAAARAKGVNVVLTTGRPYA 48 (270)
T ss_pred CccCHHH----HHHHHHHHHCCCEEEEecCCChH
Confidence 3465543 46688888999999988765443
No 212
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=38.43 E-value=63 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=29.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 35556789999999999999999775 7888888764
No 213
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=38.14 E-value=49 Score=28.14 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=39.4
Q ss_pred hccCcchhHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 15 RVTSFSDRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 15 ~~~~~~~r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
||.=-..+-...+++.=||-|- +.. .+....-.++-+.|..|+++| |.++.||++-
T Consensus 118 HGtwvpL~~M~PdadipVV~iS---i~~----~~~~~~h~~lG~al~~lree~--vlilaSGs~~ 173 (268)
T COG3384 118 HGTWVPLRYMFPDADIPVVQIS---IDC----TLSPADHYELGRALRKLREEG--VLILASGSLV 173 (268)
T ss_pred ccceeeehhhCCccCCcEEEEe---cCC----CCCHHHHHHHHHHHHHHHhCC--EEEEecCcce
Confidence 3444444555666766666653 221 245677789999999999997 9999999983
No 214
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=38.13 E-value=70 Score=25.87 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=28.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++++.|.-||++|.=
T Consensus 167 LDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 167 IDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 344446799988888999999988888888888864
No 215
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=37.89 E-value=34 Score=25.67 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
.+.+.+..|++.|+.+.+||++...
T Consensus 98 g~~~~L~~L~~~g~~~~i~Tn~~~~ 122 (221)
T TIGR02253 98 GVRDTLMELRESGYRLGIITDGLPV 122 (221)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCchH
Confidence 4567788999999999999999643
No 216
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.87 E-value=68 Score=24.24 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=27.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++ |.-||+||.
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 187 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35555779999889999999998764 888888875
No 217
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=37.79 E-value=72 Score=24.25 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=26.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++ |.-||+||-
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 165 ADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35555679998888899999988764 777777764
No 218
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.72 E-value=70 Score=24.41 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++ |.-||+||.
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 35556789999989999999998654 777777764
No 219
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=37.60 E-value=75 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
|.++...++|...-..+.+.+.++.++ |.-||+||-
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 212 (236)
T cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212 (236)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 345555789999999999999999775 666666663
No 220
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.60 E-value=85 Score=22.62 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=26.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.+.|.-++++|.
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 35555679998889999999998887666665553
No 221
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=37.58 E-value=56 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=27.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.+ +..||+||-=
T Consensus 140 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~ 175 (197)
T cd03278 140 VLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHR 175 (197)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence 34555578999999999999999866 6777777644
No 222
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=37.55 E-value=33 Score=23.00 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIM 72 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVIL 72 (131)
..++-+=+|.......+-.-++.+....-.++|+.|+++|+.||=
T Consensus 10 ~~~w~~qL~~~~~~~~~~~v~~iD~~~~~~~~I~~L~~~G~~vic 54 (74)
T PF03537_consen 10 GTTWQYQLGGPIDPDPDVDVVVIDLFDFSKEEIARLKAQGKKVIC 54 (74)
T ss_dssp SS--EEE-SS-HHHTSS-SEEEE-SBS--HHHHHHHHHTT-EEEE
T ss_pred CCEEEEEeCCCcCCCCCCCEEEECCccCCHHHHHHHHHCCCEEEE
Confidence 455556666654443321112333334568999999999988774
No 223
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=37.51 E-value=77 Score=24.28 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=26.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++|.-||++|.-
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 44456789888888888888888888877777653
No 224
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=37.50 E-value=37 Score=30.05 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 50 LGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
..-+++.++||++|.+.|.++|-||-.-
T Consensus 32 T~Dv~aTv~QI~~L~~aG~dIVRvtv~~ 59 (361)
T COG0821 32 TADVEATVAQIKALERAGCDIVRVTVPD 59 (361)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3456899999999999999999998653
No 225
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=37.46 E-value=73 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=26.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++|.-||+||-
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH 195 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195 (241)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEc
Confidence 35555679988878888888888877887777765
No 226
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=37.36 E-value=79 Score=23.98 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=26.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+-+.++.+.|.-||++|.
T Consensus 128 lDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh 162 (200)
T cd03217 128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162 (200)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 35555679998888888999888877777777764
No 227
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=37.23 E-value=74 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=27.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++...++|...-..+.+.|.++.++|.-|+++|-
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH 196 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4445789999888999999999888887777774
No 228
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.09 E-value=68 Score=24.87 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=28.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35555789999888999999999875 7777777754
No 229
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.07 E-value=67 Score=26.06 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=29.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|...-..+.+-+.++.++ |.-||+||.=
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 167 ILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345556789998888899999999775 8899999865
No 230
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.87 E-value=70 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 35555679998888999999999874 8888887764
No 231
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=36.77 E-value=48 Score=24.89 Aligned_cols=27 Identities=7% Similarity=0.196 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
...++.+.++++.|+.++++|+=+...
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~ 56 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQ 56 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHH
Confidence 456788888999999999999887644
No 232
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.75 E-value=74 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.+++++|.-|+++|.
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH 194 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH 194 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 44445679998888899999999888888888773
No 233
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.75 E-value=68 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=29.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.+++++ |.-||+||.=
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 164 LDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45555789999889999999999875 8888888854
No 234
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=36.75 E-value=47 Score=26.73 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..++++.+.+..++|..|++++||=.
T Consensus 66 ~~~i~~~i~~~~~~g~~Vv~L~sGDP 91 (257)
T PRK15473 66 LEQIIDLMEAGVKAGKTVVRLQTGDV 91 (257)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCcCc
Confidence 35677777777788999999999965
No 235
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=36.70 E-value=69 Score=24.72 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=27.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.|.++.++ |.-||+||-=
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35555679998888899999998764 7777777653
No 236
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=36.63 E-value=43 Score=25.16 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccch
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
..+.+.+..|+++|+.+.++|++.
T Consensus 97 ~~~~~~L~~L~~~g~~l~i~Sn~~ 120 (211)
T TIGR02247 97 PSMMAAIKTLRAKGFKTACITNNF 120 (211)
T ss_pred hhHHHHHHHHHHCCCeEEEEeCCC
Confidence 456778888999999999999874
No 237
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=36.50 E-value=91 Score=22.94 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=27.8
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+|.|+...++|...-..+++.+.++..+|..++++|-
T Consensus 103 lllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH 139 (162)
T cd03227 103 YILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139 (162)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 4456666779998888899999988777777776653
No 238
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=36.48 E-value=68 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
|.++...++|...-..+.+.+.++.++ |.-|++||.
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH 203 (280)
T PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 345556789999999999999999764 888888873
No 239
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=36.47 E-value=82 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=27.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++|.-|+++|.=
T Consensus 168 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 168 DEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 55556799888888888898888778878777764
No 240
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=36.38 E-value=63 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=25.9
Q ss_pred CeEEEEe-CccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 29 RRLVVKL-GSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 29 krIVIKi-GSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|-|+.=+ || |.+++ +.++... .+.|.+++++|+.|+++|-=
T Consensus 4 kli~~DlDGT--Ll~~~-~~i~~~~----~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 4 RVIALDLDGT--LLTPK-KTILPES----LEALARAREAGYKVIIVTGR 45 (272)
T ss_pred cEEEEeCCCc--eECCC-CccCHHH----HHHHHHHHHCCCEEEEEcCC
Confidence 4445555 43 33343 3466643 46788899999999998743
No 241
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=36.36 E-value=75 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=31.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.++|.-||+||-=
T Consensus 195 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 195 ILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4465567899999999999999999999998888864
No 242
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=36.31 E-value=81 Score=24.44 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=26.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.++|.-||+||.
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH 200 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34445678888777888888888777777777765
No 243
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.26 E-value=72 Score=26.62 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=28.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++|.-||+||.=
T Consensus 201 DEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd 235 (320)
T PRK13631 201 DEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235 (320)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 55567899998889999999998888888888765
No 244
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=36.21 E-value=75 Score=24.66 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=27.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 138 LDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35555789999999999999998775 7777777653
No 245
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=36.18 E-value=67 Score=28.23 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=30.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|......+.+.|.++.++|.-||+||-=
T Consensus 427 LDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd 462 (510)
T PRK15439 427 VDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462 (510)
T ss_pred ECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 355567899999999999999998888888888865
No 246
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=36.15 E-value=74 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=28.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHH-hCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECH-LEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~-~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++. +.|.-||++|.=
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 355557799988889999999987 678877777754
No 247
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=36.11 E-value=77 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=27.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++|.-||+||-=
T Consensus 163 lDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd 198 (255)
T cd03236 163 FDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198 (255)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 355456799988888889999998888877777654
No 248
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=36.09 E-value=78 Score=24.08 Aligned_cols=36 Identities=22% Similarity=0.096 Sum_probs=27.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||+||.-
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35555679999989999999999875 7777777654
No 249
>PRK10976 putative hydrolase; Provisional
Probab=35.99 E-value=66 Score=25.11 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 46 HGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 46 ~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
+.++.. ..+.|.+|+++|+.|+++|-=..
T Consensus 18 ~~is~~----~~~ai~~l~~~G~~~~iaTGR~~ 46 (266)
T PRK10976 18 HTLSPY----AKETLKLLTARGIHFVFATGRHH 46 (266)
T ss_pred CcCCHH----HHHHHHHHHHCCCEEEEEcCCCh
Confidence 346654 35668888899999999875543
No 250
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=35.90 E-value=61 Score=24.63 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCeEEEEc
Q psy11676 55 SIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVS 74 (131)
.|.+-|.+|.+.|++|+|+|
T Consensus 151 ~L~~li~~l~~~~~~V~ITs 170 (181)
T PF08665_consen 151 ELRSLIKELRNAGRRVVITS 170 (181)
T ss_pred HHHHHHHHHHhcCceEEEEC
Confidence 88889999999999988876
No 251
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=35.79 E-value=70 Score=25.50 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=27.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 173 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 35555679999889999999999875 7777777653
No 252
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=35.73 E-value=81 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEG-RECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G-~eVILVSS 75 (131)
++...++|......+.+.+.++++++ .-|++||-
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 55556799998899999999998876 66666654
No 253
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=35.73 E-value=76 Score=25.18 Aligned_cols=20 Identities=15% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHHHHHhCCCeEEEEccch
Q psy11676 58 EQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 58 ~qIa~L~~~G~eVILVSSGA 77 (131)
+....|.++|++|.+++++.
T Consensus 18 ~la~~l~~~G~ev~v~~~~~ 37 (350)
T cd03785 18 ALAEELRERGAEVLFLGTKR 37 (350)
T ss_pred HHHHHHHhCCCEEEEEECCC
Confidence 33445567899999998763
No 254
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=35.58 E-value=1.2e+02 Score=27.26 Aligned_cols=49 Identities=8% Similarity=0.178 Sum_probs=40.3
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCe-EEEEcc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRE-CIMVTS 75 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~e-VILVSS 75 (131)
-+.||+.|.+=-++-.+ ++.=.|..+|.+-+..|..|.++|-+ |||.|-
T Consensus 15 ~~gK~VllRvD~NvPi~-~g~I~Dd~RI~~~lpTI~~L~~~gak~vvl~SH 64 (417)
T PTZ00005 15 LKGKRVLIRVDFNVPIK-EGVIKDATRIKATLPTIKYLLEQGAKSVVLMSH 64 (417)
T ss_pred cCCCEEEEEecCCCCCc-CCcCCChHhHHHHHHHHHHHHHCCCCEEEEEec
Confidence 35799999999998554 32336889999999999999999996 888875
No 255
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=35.38 E-value=76 Score=26.53 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|+...++|..--..+.+-+.+|+++|+-|++||=
T Consensus 164 DEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4445679998889999999999999999999984
No 256
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=35.34 E-value=41 Score=25.03 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
....+.+..|+++|+.+.|||++.-
T Consensus 108 ~g~~~~l~~L~~~g~~~~i~Sn~~~ 132 (203)
T TIGR02252 108 PDAIKLLKDLRERGLILGVISNFDS 132 (203)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCch
Confidence 4456778889999999999999853
No 257
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=35.23 E-value=74 Score=26.10 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=31.5
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccch
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSGA 77 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSGA 77 (131)
+|.++.+|.+|...=..+.+-+.++.++ |.-||+||==.
T Consensus 164 ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 3678778889998888888888888655 89999998543
No 258
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.23 E-value=82 Score=25.09 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=27.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+-+.++.++|.-||+||-=
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 195 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55556799988888999999988788877777754
No 259
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=35.17 E-value=44 Score=26.06 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+.+.+..|+++|+.+.++||+..
T Consensus 96 ~g~~e~L~~Lk~~g~~~~i~Tn~~~ 120 (224)
T PRK14988 96 EDTVPFLEALKASGKRRILLTNAHP 120 (224)
T ss_pred CCHHHHHHHHHhCCCeEEEEeCcCH
Confidence 4667889999999999999999853
No 260
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=35.15 E-value=75 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=30.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.+.|.-||+||-=
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 3455567899999999999999998889888888875
No 261
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=35.11 E-value=78 Score=27.66 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=30.4
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|......+.+-|.+|.+.|.-||+||-=
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 455 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD 455 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 355567899999999999999999899999988874
No 262
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=35.07 E-value=1.3e+02 Score=22.87 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=31.2
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhC--CCeEEEEcc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLE--GRECIMVTS 75 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~--G~eVILVSS 75 (131)
+.+.|||=+|+|=+... .....+...+.+-|..+++. +..|++++.
T Consensus 89 ~pd~VvI~~G~ND~~~~---~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 89 NPKVVVLLIGTNNIGHT---TTAEEIAEGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred CCCEEEEEecccccCCC---CCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 46889999999977543 12233456666667777765 567888774
No 263
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=35.05 E-value=73 Score=27.69 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=30.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|...-..+.+-|.+|.+.|.-||+||.=
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd 450 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 355567899999999999999999999999999875
No 264
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=34.93 E-value=39 Score=25.47 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHHhhh
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaaG~~ 83 (131)
....+.+..|+++|+.+.|||++.-..-..
T Consensus 90 ~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~ 119 (220)
T TIGR03351 90 PGAEEAFRSLRSSGIKVALTTGFDRDTAER 119 (220)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHH
Confidence 345678899999999999999997544333
No 265
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=34.88 E-value=83 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=28.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
-++...++|...-..+.+.|.++.++|.-|+++|.
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH 230 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 35555789999989999999999888887777664
No 266
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.80 E-value=80 Score=25.51 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=29.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-|++||.=
T Consensus 164 LDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 45555789999989999999999876 8888888854
No 267
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=34.76 E-value=27 Score=27.78 Aligned_cols=53 Identities=11% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcccccc--CChHHHhhhccCC
Q psy11676 50 LGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELL--MSLSMRETLSPKD 103 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~l--~~~~~~qalaa~~ 103 (131)
+.+.....+.++.|.+.||.+|+||-=+ |.|+..+.+... ++--+.+.|+.+|
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQs-Gi~rgyf~~~~f~~~~~~m~~~l~~~g 84 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQS-GIGRGYFTEADFDKLHNKMLKILASQG 84 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCC-CccccCccHHHHHHHHHHHHHHHHHcC
Confidence 4455778999999999999999999532 233333443221 1123445566655
No 268
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=34.70 E-value=85 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=28.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.+ .|.-||+||-=
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3555678999999999999999854 58888888764
No 269
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.68 E-value=77 Score=25.59 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=28.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-|++||.-
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555679999889999999998775 8888888855
No 270
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.59 E-value=85 Score=25.22 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=28.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++|.-|++||-=
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~ 197 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55557899998889999999998888888888743
No 271
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=34.57 E-value=40 Score=28.55 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+-|..|++.|+++.|||+|-.
T Consensus 185 Ga~elL~~Lk~~G~~~aIvSgg~~ 208 (322)
T PRK11133 185 GLTELVLKLQALGWKVAIASGGFT 208 (322)
T ss_pred hHHHHHHHHHHcCCEEEEEECCcc
Confidence 445567888999999999999963
No 272
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=34.46 E-value=80 Score=24.38 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=26.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++ |.-||++|.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh 196 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 34445679998888888999988764 777777764
No 273
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=34.34 E-value=80 Score=25.15 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=28.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++.++ |.-||+||-=
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 345555779998888899999998876 7878877754
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=34.28 E-value=80 Score=27.61 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=30.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.|.++.++|.-||+||.=
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd 204 (510)
T PRK09700 169 MDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204 (510)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 355567899999999999999998888888888875
No 275
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=34.25 E-value=50 Score=24.81 Aligned_cols=24 Identities=4% Similarity=0.278 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccch
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
..+.+.+..|+++|+.+.++|++.
T Consensus 87 ~g~~e~L~~l~~~g~~~~i~Sn~~ 110 (199)
T PRK09456 87 PEVIAIMHKLREQGHRVVVLSNTN 110 (199)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCc
Confidence 467778889999999999999985
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=34.20 E-value=81 Score=27.56 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=30.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+-+.++.++|.-||+||-=
T Consensus 432 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 432 IFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred EECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3455567899999999999999998888888888875
No 277
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=34.05 E-value=69 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=27.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++. +|.-||++|.=
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~ 196 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHR 196 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 3455557899999999999999986 48777777654
No 278
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=33.99 E-value=45 Score=26.09 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=16.1
Q ss_pred HHHHHH-HHHhCCCeEEEEccch
Q psy11676 56 IVEQVA-ECHLEGRECIMVTSGA 77 (131)
Q Consensus 56 l~~qIa-~L~~~G~eVILVSSGA 77 (131)
..+.|+ .++++|+.|+|||+.-
T Consensus 99 a~e~L~~~l~~~G~~v~IvSas~ 121 (210)
T TIGR01545 99 VAERLRQYLESSDADIWLITGSP 121 (210)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCc
Confidence 344453 5677899999999974
No 279
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=33.62 E-value=83 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555689999889999999999874 7777777643
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=33.53 E-value=91 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=28.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++|.-||++|-=
T Consensus 157 lDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~ 192 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192 (248)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 355556799988888999999988778888887754
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=33.28 E-value=81 Score=27.35 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|-|+...++|......+.+.+.++.++|.-||+||--
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3455567899999999999999998888888887743
No 282
>PRK06769 hypothetical protein; Validated
Probab=33.27 E-value=44 Score=25.10 Aligned_cols=25 Identities=4% Similarity=-0.028 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+....+.+..|+++|+.+.+||+..
T Consensus 30 ~pgv~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 30 FPFTKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCc
Confidence 4677888999999999999999974
No 283
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=33.26 E-value=85 Score=27.42 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=30.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+-+.++.++|.-||+||.=
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd 454 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3466567899999999999999998889888888875
No 284
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.26 E-value=88 Score=25.40 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=27.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEG-RECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G-~eVILVSS 75 (131)
++.+.++|..--..+.+-+.+|++++ .-+|+||-
T Consensus 163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH 197 (235)
T COG1122 163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH 197 (235)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 55567899999999999999999995 56666664
No 285
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=33.26 E-value=62 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..++.+.+.+..++|..|++++||=-
T Consensus 57 ~~~~~~~i~~~~~~g~~V~~L~~GDP 82 (229)
T TIGR01465 57 LEEIVDIMSDAHREGKLVVRLHTGDP 82 (229)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCcCc
Confidence 35667777777778999999999854
No 286
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=33.12 E-value=1e+02 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=22.0
Q ss_pred eCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 35 LGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 35 iGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
||+.-.-... ||... .+..+++. |.++|++|.+++++.
T Consensus 5 i~~~~~~~~~-gG~~~-~~~~la~~---L~~~g~~v~v~~~~~ 42 (363)
T cd04955 5 IGTRGIPAKY-GGFET-FVEELAPR---LVARGHEVTVYCRSP 42 (363)
T ss_pred EecCcCCccc-CcHHH-HHHHHHHH---HHhcCCCEEEEEccC
Confidence 5655443332 33332 34455544 447899999998864
No 287
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.06 E-value=47 Score=23.68 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCeEEEEccc
Q psy11676 55 SIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSG 76 (131)
+++.-+..|++.|++|+++++.
T Consensus 111 Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 111 DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred cHHHHHHHHHHcCCEEEEEccC
Confidence 4455566677778888887776
No 288
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=33.01 E-value=53 Score=24.60 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
....+-+..|+++|+.+.++|++.-.
T Consensus 78 ~g~~~~L~~L~~~g~~~~i~Sn~~~~ 103 (205)
T TIGR01454 78 PGVPELLAELRADGVGTAIATGKSGP 103 (205)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCchH
Confidence 46677888999999999999997543
No 289
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.76 E-value=87 Score=25.16 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=28.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~ 200 (277)
T PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555789999889999999999876 8889988765
No 290
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=32.73 E-value=52 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+-+..|+++|+.+.++|++..
T Consensus 89 g~~~~L~~l~~~g~~~~i~S~~~~ 112 (213)
T TIGR01449 89 GVEATLGALRAKGLRLGLVTNKPT 112 (213)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCH
Confidence 345567788899999999999864
No 291
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=32.71 E-value=97 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+.+......+..|++||.|.+
T Consensus 131 ~~~~~l~~~~~~~~~vliVsHg~~ 154 (158)
T PF00300_consen 131 QFLDELIAYKRPGENVLIVSHGGF 154 (158)
T ss_dssp HHHHHHHHHHHTTSEEEEEE-HHH
T ss_pred HHHHHHHHHhCCCCEEEEEecHHH
Confidence 333444433367999999999965
No 292
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.68 E-value=1.9e+02 Score=20.71 Aligned_cols=47 Identities=4% Similarity=0.015 Sum_probs=33.5
Q ss_pred ccCCeEEEEeCccccccCCCCCCcH-HHHHHHHHHHHHHHh--CCCeEEEEccc
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLAL-GRLASIVEQVAECHL--EGRECIMVTSG 76 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~-~~l~~l~~qIa~L~~--~G~eVILVSSG 76 (131)
.+.+-|||-+|++=+... .+. .+...+.+-|..+++ .+.+|+++|--
T Consensus 47 ~~pd~vvl~~G~ND~~~~----~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~ 96 (169)
T cd01828 47 LQPKAIFIMIGINDLAQG----TSDEDIVANYRTILEKLRKHFPNIKIVVQSIL 96 (169)
T ss_pred cCCCEEEEEeeccCCCCC----CCHHHHHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 356889999999976532 233 445667777777777 78899998754
No 293
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=32.64 E-value=1e+02 Score=23.44 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+.++...++|......+.+.+.++.+.|..+|++|--
T Consensus 121 ilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 121 VLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3454456788888888888888887778888887754
No 294
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=32.46 E-value=47 Score=24.04 Aligned_cols=22 Identities=14% Similarity=0.065 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCeEEEEccc
Q psy11676 55 SIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSG 76 (131)
.+.+.+..|++.|+.+.++|++
T Consensus 92 g~~~~l~~l~~~g~~i~i~S~~ 113 (185)
T TIGR02009 92 GIENFLKRLKKKGIAVGLGSSS 113 (185)
T ss_pred CHHHHHHHHHHcCCeEEEEeCc
Confidence 3556778888999999999987
No 295
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=32.39 E-value=91 Score=24.76 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|......+.+.|.++.++ |.-||++|.=
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555679999989999999999765 7777777764
No 296
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.33 E-value=88 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ .|.-|++||.=
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3555578999998999999999976 48888888854
No 297
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=32.28 E-value=1.7e+02 Score=22.04 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=33.3
Q ss_pred cCCeEEEEeCccccccCCCCCCcH-HHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLAL-GRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~-~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+...+||=+|+|=+.. +.+. .+...+.+-|..+++.|.+++|+++.
T Consensus 71 ~pd~Vii~~GtND~~~----~~~~~~~~~~l~~li~~~~~~~~~~ill~~~ 117 (191)
T PRK10528 71 QPRWVLVELGGNDGLR----GFPPQQTEQTLRQIIQDVKAANAQPLLMQIR 117 (191)
T ss_pred CCCEEEEEeccCcCcc----CCCHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 5688999999997653 2333 34466777777777889999998753
No 298
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.24 E-value=91 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=29.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 168 llDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd 205 (290)
T PRK13634 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205 (290)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345556789998888899999999765 8888888854
No 299
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.09 E-value=80 Score=30.60 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=30.1
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 38 AVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 38 s~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++.|++.+++|......+.+.+..|...|.-|+|+|--
T Consensus 981 ~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 981 SLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred eEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 345566667899999999999999998878777777653
No 300
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=32.03 E-value=88 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.++|.-||+||-=
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 199 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3455567899999999999999998889888888875
No 301
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=31.86 E-value=91 Score=24.08 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=26.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-||++|.=
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 185 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5555679998888899999999875 6766666643
No 302
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=31.83 E-value=54 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
.+.+.+..|+++|+.+.|||++.-..
T Consensus 96 g~~~~l~~l~~~g~~~~i~S~~~~~~ 121 (222)
T PRK10826 96 GVREALALCKAQGLKIGLASASPLHM 121 (222)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCcHHH
Confidence 36677788999999999999986443
No 303
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=31.72 E-value=16 Score=27.26 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHHHHHHHHh-CCCeEEEEccchHHHhhhhccccccCChHHHhhhccCCCcccccccCc
Q psy11676 55 SIVEQVAECHL-EGRECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPKDHSRSNHFDSE 113 (131)
Q Consensus 55 ~l~~qIa~L~~-~G~eVILVSSGAVaaG~~~L~~~~l~~~~~~qalaa~~llT~~Df~~r 113 (131)
.+++++..+.+ .|.++++.+.++ ..|...+ .++.. ...+.-+|.-++|.||....
T Consensus 11 ~~~~~v~~~L~~~~~ep~i~~~~~-~~g~tii--e~le~-~~~~~~faIvl~TpDD~~~~ 66 (125)
T PF10137_consen 11 AAAEAVERFLEKLGLEPIIWHEQP-NLGQTII--EKLEE-AADSVDFAIVLFTPDDIGYS 66 (125)
T ss_pred HHHHHHHHHHHhCCCceEEeecCC-CCCCchH--HHHHH-HhccCCEEEEEEcccccccc
Confidence 45556666655 589999999997 5555443 23333 34556677778899998743
No 304
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=31.71 E-value=62 Score=27.67 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=20.9
Q ss_pred EEEeCccccccCCCCCCcHHHHHHH-HHHHHHHHhCCCeEEEEccch
Q psy11676 32 VVKLGSAVITREDEHGLALGRLASI-VEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 32 VIKiGSs~Lt~~~~~~l~~~~l~~l-~~qIa~L~~~G~eVILVSSGA 77 (131)
||||| +..- |++-...+-+| -++.|. +.+.+|..|+|||
T Consensus 2 vvKiG---iiKl--GNig~s~~idl~lDErAd--RedI~vrv~gsGa 41 (277)
T PRK00994 2 VVKIG---IIKL--GNIGMSPVIDLLLDERAD--REDIDVRVVGSGA 41 (277)
T ss_pred eEEEE---EEEe--cccchHHHHHHHHHhhhc--ccCceEEEeccCC
Confidence 66776 2321 23444444443 334442 2378888888886
No 305
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.63 E-value=95 Score=24.82 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=27.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.++ |.-||++|.=
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45556789999989999999998765 7777777654
No 306
>PRK11590 hypothetical protein; Provisional
Probab=31.45 E-value=51 Score=25.31 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHH-HHHHhCCCeEEEEccch
Q psy11676 56 IVEQV-AECHLEGRECIMVTSGA 77 (131)
Q Consensus 56 l~~qI-a~L~~~G~eVILVSSGA 77 (131)
..+.| ..|+++|+.+++||+..
T Consensus 100 a~e~L~~~l~~~G~~l~IvSas~ 122 (211)
T PRK11590 100 VQERLTTYLLSSDADVWLITGSP 122 (211)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Confidence 34555 35677899999999975
No 307
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=31.43 E-value=96 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=30.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|......+.+.+.++.++|.-||+||-=
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd 464 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE 464 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 355567899999899999999998889888888865
No 308
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.35 E-value=1.3e+02 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=28.0
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
..+.+||-+|||=.. ....|..+.+.+ ..|.+|+||+.-
T Consensus 50 ~~d~vvi~lGtNd~~-------~~~nl~~ii~~~----~~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPF-------TKDQLDELLDAL----GPDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCC-------CHHHHHHHHHHc----CCCCEEEEEECC
Confidence 468899999998653 245666666655 357999999875
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=31.35 E-value=95 Score=27.01 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=29.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|...-..+.+.+.++.+.|.-||+||-=
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 462 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE 462 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 355567899998888999999998888888888865
No 310
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=31.18 E-value=2e+02 Score=20.79 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=34.3
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
.+...|+|=+|++=..... ....+...+-.-|..+++.|.++|+++.-.+
T Consensus 58 ~~~d~v~i~~G~ND~~~~~---~~~~~~~~~~~li~~~~~~~~~~il~~~~p~ 107 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVNT---SLEMIKDNIRSMVELAEANGIKVILASPLPV 107 (183)
T ss_pred cCCCEEEEEeccCccccCC---CHHHHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 3567899999999776431 1233456666666677788999999975443
No 311
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.13 E-value=83 Score=24.11 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=26.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.+ |.-||+||.=
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 196 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHR 196 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 3555567999998999999998864 8777777753
No 312
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.05 E-value=2.1e+02 Score=20.90 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=31.6
Q ss_pred ccCCeEEEEeCccccccCCCC--CCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 26 KYARRLVVKLGSAVITREDEH--GLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~--~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+...|||=+|++=+....+. ..+.+.+....+++....+.+..|+++|---
T Consensus 68 ~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~~~~p 121 (193)
T cd01835 68 NVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVVGPTP 121 (193)
T ss_pred CCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 356889999999988754210 2344444443344444344578888887543
No 313
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=30.72 E-value=98 Score=26.91 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=30.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|......+.+.+.++.+.|.-||+||.=
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~ 193 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK 193 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 455557899999899999999998889988888875
No 314
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=30.67 E-value=56 Score=23.64 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCeEEEEccch
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+.+.+..|+++|+.+.++|++.
T Consensus 91 g~~~~L~~L~~~g~~~~i~s~~~ 113 (185)
T TIGR01990 91 GIKNLLDDLKKNNIKIALASASK 113 (185)
T ss_pred cHHHHHHHHHHCCCeEEEEeCCc
Confidence 45566889999999999999763
No 315
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=30.53 E-value=83 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
....+++.|.+...+|.+|++++||=-
T Consensus 75 ~~~~~~~~i~~~~~~g~~V~~l~~GDP 101 (229)
T PRK05576 75 VWKENAEEIAAEAEEGKNVAFITLGDP 101 (229)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCcCc
Confidence 345777888877788999999999854
No 316
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.38 E-value=1e+02 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=27.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-|++||.=
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555789998888899999998876 8777777743
No 317
>KOG2728|consensus
Probab=30.37 E-value=55 Score=28.24 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=16.1
Q ss_pred HHHHHHHHHH--hCCCeEEEEccchH
Q psy11676 55 SIVEQVAECH--LEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~--~~G~eVILVSSGAV 78 (131)
.+.++..+++ ..|.++|+||||--
T Consensus 16 s~~~eFi~~q~s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 16 SLIEEFIKLQASLQGRRIVLVTSGGT 41 (302)
T ss_pred HHHHHHHHHHhhccCceEEEEecCCe
Confidence 3445555554 35788999999953
No 318
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=30.24 E-value=66 Score=24.08 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=32.0
Q ss_pred ccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 26 ~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
...+-+|+-+. .+++..+.. .....+.+.+..|++.|+.+.++|++.
T Consensus 23 ~~v~~vv~D~D-gtl~~~~~~----~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 23 VGIKGVVLDKD-NTLVYPDHN----EAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred CCCCEEEEecC-CccccCCCC----CcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 34566777775 445543311 123456778899999999999999976
No 319
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.22 E-value=1.1e+02 Score=24.43 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=27.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|......+.+.+.++.++ |.-||+||.
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH 201 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35555779999889999999998765 777777764
No 320
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.97 E-value=1.1e+02 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=27.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-|+++|.=
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4445679998888999999998875 7777777653
No 321
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=29.95 E-value=1e+02 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=24.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
|.++...++|......+.+.+.++. +|..||++|
T Consensus 193 llDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iS 226 (251)
T cd03273 193 ILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVS 226 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 3455556788888888888888874 477777776
No 322
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=29.95 E-value=1.1e+02 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=27.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.+ .|.-||+||-=
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3555678999988899999999865 47777777754
No 323
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=29.93 E-value=78 Score=29.06 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=29.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++.+.|+|..-=.++-+-|.+|-++|.-|+++||=
T Consensus 425 lDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE 460 (500)
T COG1129 425 LDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE 460 (500)
T ss_pred ECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 355567899877677777778888999999999996
No 324
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=29.90 E-value=1.1e+02 Score=23.90 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-||+||--
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35445679998888888888888664 7777777754
No 325
>PTZ00174 phosphomannomutase; Provisional
Probab=29.67 E-value=1e+02 Score=24.36 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCeEEEEe-CccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 28 ARRLVVKL-GSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 28 ~krIVIKi-GSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
.|-|+.=+ || +| +++ +.++... .+.|.+++++|+.|+++|.-...
T Consensus 5 ~klia~DlDGT-LL-~~~-~~is~~~----~~ai~~l~~~Gi~~viaTGR~~~ 50 (247)
T PTZ00174 5 KTILLFDVDGT-LT-KPR-NPITQEM----KDTLAKLKSKGFKIGVVGGSDYP 50 (247)
T ss_pred CeEEEEECcCC-Cc-CCC-CCCCHHH----HHHHHHHHHCCCEEEEEcCCCHH
Confidence 34555566 43 33 443 4577643 46678889999999999876543
No 326
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=29.66 E-value=1.1e+02 Score=22.30 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHhC--CCeEEEEccchHHH
Q psy11676 49 ALGRLASIVEQVAECHLE--GRECIMVTSGAVAF 80 (131)
Q Consensus 49 ~~~~l~~l~~qIa~L~~~--G~eVILVSSGAVaa 80 (131)
-.+....+...+.++.++ +..|++||.|.+..
T Consensus 117 ~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~ 150 (177)
T TIGR03162 117 FADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIR 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHH
Confidence 334455666666666553 67899999998743
No 327
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=29.64 E-value=64 Score=26.45 Aligned_cols=25 Identities=12% Similarity=0.035 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
.+++.|++..++|.+|++++||=-.
T Consensus 90 ~~a~~i~~~~~~g~~Vv~L~~GDP~ 114 (249)
T TIGR02434 90 IWAQAIAEELGDDGTGAFLVWGDPS 114 (249)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCch
Confidence 5778888888889999999999653
No 328
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.63 E-value=1.2e+02 Score=22.71 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=24.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
.++...++|......+.+.+.++.++|.-|++||
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 180 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS 180 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3444567888887778887776667777777665
No 329
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=29.56 E-value=89 Score=24.37 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 51 GRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 51 ~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
....++++.|.+..++|.+|++++||=-
T Consensus 74 ~~~~~~~~~i~~~~~~g~~Vv~l~~GDP 101 (230)
T TIGR01467 74 KAWDEAAEAVAAELEEGRDVAFLTLGDP 101 (230)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3456788888888888999999999854
No 330
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=29.51 E-value=1.1e+02 Score=23.97 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=27.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+-+.++.++ |.-+|+||-=
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 170 FDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 35555679998888888999988775 7777777754
No 331
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=29.50 E-value=1.3e+02 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++++ .|.-||+||--
T Consensus 165 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 165 ADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3444567999888889999998886 48888888765
No 332
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=29.43 E-value=1.1e+02 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=29.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
-++...++|......+.+.+.++.++|.-||+||-=
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 164 FDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 355567899998899999999998888888888874
No 333
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=29.33 E-value=1.3e+02 Score=23.31 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=27.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|......+.+.+.++.+ .|.-||+||.=
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3555578999999999999999875 58888777743
No 334
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=29.30 E-value=1.1e+02 Score=24.37 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=26.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-||+||-=
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5545679988888888999988875 7777777754
No 335
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=29.25 E-value=58 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+....+.+.+|+++|+.+.++|++.
T Consensus 31 ~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 31 IPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 3556788999999999999999885
No 336
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=29.05 E-value=75 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.++.||..||.+-..|..||+|-+-=
T Consensus 9 vlGRLAs~IA~~L~~Gd~VvViNaek 34 (142)
T TIGR01077 9 ILGRLASVVAKQLLNGEKVVVVNAEK 34 (142)
T ss_pred chHHHHHHHHHHHhcCCEEEEEechH
Confidence 56788889999889999999986543
No 337
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=28.97 E-value=1.2e+02 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+-+.++.++ |.-||+||.=
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 5555789998888888889988875 7777777654
No 338
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=28.86 E-value=1.1e+02 Score=25.40 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=32.8
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+|+++.+|++|++.=.++.+-..++...|--|++.|=-
T Consensus 159 LlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd 196 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD 196 (223)
T ss_pred EeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc
Confidence 46787788999998889999999999999999988754
No 339
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=28.85 E-value=1.1e+02 Score=23.98 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|......+.+.|.++.++ |.-||+||.=
T Consensus 175 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 35545679998888888889888775 7777777654
No 340
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=28.72 E-value=2.2e+02 Score=20.27 Aligned_cols=85 Identities=21% Similarity=0.074 Sum_probs=44.4
Q ss_pred EEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhccccccCChHHHhhhccCCCc---cccc
Q psy11676 33 VKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPKDHS---RSNH 109 (131)
Q Consensus 33 IKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~~~~l~~~~~~qalaa~~ll---T~~D 109 (131)
|=.|.+.-.+.. . ..+..=++.-++|.++|..-.||.||....+ ......-.+++.+...|.. -.-+
T Consensus 4 vVLG~~~~~~~~---~--~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~-----~~~~ea~~m~~~l~~~gv~~~~I~~e 73 (150)
T cd06259 4 VVLGGGVNGDGP---S--PILAERLDAAAELYRAGPAPKLIVSGGQGPG-----EGYSEAEAMARYLIELGVPAEAILLE 73 (150)
T ss_pred EEeCCccCCCCC---C--hHHHHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCCHHHHHHHHHHHcCCCHHHeeec
Confidence 335666544331 2 4444555566667777865555556643222 1111223445555555432 1224
Q ss_pred ccCcchhhhHHhHHHHhh
Q psy11676 110 FDSENPKTNIYTHIILMF 127 (131)
Q Consensus 110 f~~r~r~~Na~nTi~~~~ 127 (131)
-.++.-+.|+.++...+-
T Consensus 74 ~~s~~T~ena~~~~~~~~ 91 (150)
T cd06259 74 DRSTNTYENARFSAELLR 91 (150)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 456668889988887663
No 341
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=28.67 E-value=1.2e+02 Score=23.58 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=26.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
++...++|...-..+.+.+.++.++ |.-||++|.
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH 189 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4445679998888899999988876 677777765
No 342
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.67 E-value=1.1e+02 Score=24.37 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=27.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.|.++.++ |.-||+||-=
T Consensus 139 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 139 LDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35555779999888999999998764 7777777754
No 343
>PRK11587 putative phosphatase; Provisional
Probab=28.65 E-value=66 Score=24.53 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
....+.+..|+++|+.+.+||++..
T Consensus 86 pg~~e~L~~L~~~g~~~~ivTn~~~ 110 (218)
T PRK11587 86 PGAIALLNHLNKLGIPWAIVTSGSV 110 (218)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCCCc
Confidence 4556778899999999999999864
No 344
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=28.64 E-value=1e+02 Score=23.98 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=26.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ |.-||+||.=
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~ 207 (253)
T PRK14242 173 MDEPASALDPIATQKIEELIHELKA-RYTIIIVTHN 207 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEec
Confidence 3555577999988999999999954 7777777754
No 345
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=28.52 E-value=60 Score=22.40 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 56 IVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
|.+...+|.+.|.++|+|+.|.........
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~ 31 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFC 31 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHH
Confidence 556677888899999999999984455444
No 346
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=28.48 E-value=64 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeEEEEccch
Q psy11676 56 IVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSGA 77 (131)
+.+-+..|+++|+.+.++|+|-
T Consensus 77 ~~~ll~~l~~~g~~~~i~S~~~ 98 (188)
T TIGR01489 77 FKEFIAFIKEHGIDFIVISDGN 98 (188)
T ss_pred HHHHHHHHHHcCCcEEEEeCCc
Confidence 4456678889999999999985
No 347
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=28.35 E-value=45 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
.+....+.|.+|+++|+.+++||+..-..-...+.
T Consensus 188 ~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~ 222 (300)
T PHA02530 188 PNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVE 222 (300)
T ss_pred CChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHH
Confidence 45678889999999999999999987655444443
No 348
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.11 E-value=1.2e+02 Score=24.52 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=28.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-|++||.=
T Consensus 166 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~ 201 (283)
T PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201 (283)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 5555789998888899999998775 8888888754
No 349
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=27.91 E-value=1.1e+02 Score=24.77 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=27.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 179 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4445679998888999999998876 7888888754
No 350
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=27.89 E-value=1.2e+02 Score=20.52 Aligned_cols=40 Identities=10% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
.+.+|+=+..- ..+|..-+..|++....++++|.++.++.
T Consensus 48 ~~~vIlD~s~v-------~~iDssgi~~L~~~~~~~~~~g~~~~l~~ 87 (117)
T PF01740_consen 48 IKNVILDMSGV-------SFIDSSGIQALVDIIKELRRRGVQLVLVG 87 (117)
T ss_dssp SSEEEEEETTE-------SEESHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred ceEEEEEEEeC-------CcCCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36777766532 24778888999999999999999999986
No 351
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=27.76 E-value=1e+02 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=28.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCe-EEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRE-CIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~e-VILVSSG 76 (131)
|.++...++|......+.+.+.++.++|.- ||+||.=
T Consensus 424 lLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 345556789999999999999999888765 7777654
No 352
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=27.72 E-value=92 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 51 GRLASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 51 ~~l~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
......++.+.+..++|+.|+++++|=...
T Consensus 76 ~~~~~~~~~i~~~~~~g~~v~~l~~GDp~~ 105 (238)
T PRK05948 76 QAWQAAADQVWHYLEQGEDVAFACEGDVSF 105 (238)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCChHH
Confidence 344667888888889999999999996543
No 353
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=27.69 E-value=1.2e+02 Score=20.38 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=34.5
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc-cchHHHhhhhcc
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT-SGAVAFGKQKLA 86 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS-SGAVaaG~~~L~ 86 (131)
..+.+|+=...- ..+|..-+..|.+-+.+++.+|.+++++- ++.+.-=....+
T Consensus 40 ~~~~vvlDls~v-------~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~~g 93 (109)
T cd07041 40 RARGVIIDLTGV-------PVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVELG 93 (109)
T ss_pred CCCEEEEECCCC-------chhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhC
Confidence 346677765422 13566677788888888888999999984 666644333333
No 354
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.60 E-value=1e+02 Score=23.49 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=26.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++. +|.-||+||.=
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 197 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHR 197 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 3455556799988888888888885 48877777753
No 355
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=27.47 E-value=73 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+.+|++ +|.++|++|.+++...
T Consensus 7 ~~~l~~---~L~~~G~~V~v~~~~~ 28 (160)
T PF13579_consen 7 VRELAR---ALAARGHEVTVVTPQP 28 (160)
T ss_dssp HHHHHH---HHHHTT-EEEEEEE--
T ss_pred HHHHHH---HHHHCCCEEEEEecCC
Confidence 344554 5567899999999654
No 356
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.38 E-value=84 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
...+.|.+|+++|+.|+++|.=...
T Consensus 24 ~~~~al~~l~~~G~~~~iaTGR~~~ 48 (230)
T PRK01158 24 KAVEAIRKAEKLGIPVILATGNVLC 48 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchH
Confidence 3456688899999999999876543
No 357
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.28 E-value=58 Score=26.99 Aligned_cols=21 Identities=29% Similarity=0.196 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEccc
Q psy11676 56 IVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSG 76 (131)
+-+.++-.++.+..+|+||||
T Consensus 78 fKef~e~ike~di~fiVvSsG 98 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSG 98 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 345667778999999999999
No 358
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=27.19 E-value=65 Score=25.23 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=31.9
Q ss_pred hccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 25 LKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 25 l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
+.+.+.+++-+-- ++.+.. . .+....+.+.+|+++|+.+.+||+..-
T Consensus 5 ~~~~~~~~~D~dG-~l~~~~--~----~~pga~e~L~~L~~~G~~~~ivTN~~~ 51 (242)
T TIGR01459 5 INDYDVFLLDLWG-VIIDGN--H----TYPGAVQNLNKIIAQGKPVYFVSNSPR 51 (242)
T ss_pred hhcCCEEEEeccc-ccccCC--c----cCccHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4556677777742 333322 1 246778888899999999999998653
No 359
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.17 E-value=1e+02 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEccc
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSG 76 (131)
..+.+.+..++++|..||++|+.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhhhhhhHHHHhcCCeEEEEeCC
Confidence 45666777888999999999964
No 360
>PRK02224 chromosome segregation protein; Provisional
Probab=27.09 E-value=1.1e+02 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCC-eEEEEccch
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGR-ECIMVTSGA 77 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~-eVILVSSGA 77 (131)
++.+....++|......+++.+..+...|. +||+||---
T Consensus 815 ~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~ 854 (880)
T PRK02224 815 LILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD 854 (880)
T ss_pred eEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence 455655578999999999999999887776 788888653
No 361
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=27.07 E-value=1.1e+02 Score=26.85 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=29.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.++ |.-||+||-=
T Consensus 179 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 179 IADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 345556789999999999999999775 8888888854
No 362
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=27.01 E-value=1.7e+02 Score=24.53 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=33.7
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHH-HHhCCCeEEEEccchH
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAE-CHLEGRECIMVTSGAV 78 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~-L~~~G~eVILVSSGAV 78 (131)
...=||=|+-+.+...-....+......+-+.|.+ +.+.|.+|+++-||..
T Consensus 140 ~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~L 191 (294)
T cd07372 140 WDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREAIRKTGRRAVLLASNTL 191 (294)
T ss_pred CCCcEEEEecCcccccccccCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcc
Confidence 33336666655444210012446677778888888 7888999999999985
No 363
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=26.86 E-value=2e+02 Score=22.59 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEccc
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEG-RECIMVTSG 76 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G-~eVILVSSG 76 (131)
+.+++|=+|||+ ++ ....|...++.|.+.+ .+|+.|||-
T Consensus 1 ~~~vyl~LGSNl---gd-------~~~~l~~A~~~L~~~~~~~v~~~S~~ 40 (160)
T COG0801 1 MTRVYLGLGSNL---GD-------RLKQLRAALAALDALADIRVVAVSPI 40 (160)
T ss_pred CcEEEEEecCCC---CC-------HHHHHHHHHHHHHhCCCceEEEeccc
Confidence 357888899874 11 3345666667776766 589999986
No 364
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=26.86 E-value=88 Score=24.10 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
.+..||.+||.+-..|..||+|-+--|
T Consensus 13 vlGRLAs~IA~~L~~Gd~VVViNa~kv 39 (146)
T PRK06394 13 ILGRLASYVAKRLLEGEEVVIVNAEKA 39 (146)
T ss_pred chHHHHHHHHHHHhCCCEEEEEechhe
Confidence 567889999999999999999876544
No 365
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=26.66 E-value=1.4e+02 Score=25.38 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=28.0
Q ss_pred CCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+.=||=|| |+-+++. | ..+....|++.+ .++|++|.++|-|-
T Consensus 33 ~~vpVIsVG-NltvGGT-G--KTP~v~~L~~~L---~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 33 LPVPVISVG-NLTVGGT-G--KTPLVIWLARLL---QARGYRPAILSRGY 75 (326)
T ss_pred CCCcEEEEc-ccccCCC-C--chHHHHHHHHHH---HhcCCceEEEcCCC
Confidence 344588889 5555543 3 234445566554 47899999999874
No 366
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=26.36 E-value=1.1e+02 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=30.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|......+.+.|.++.++ |.-||+||-=
T Consensus 450 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 487 (520)
T TIGR03269 450 ILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487 (520)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 446656789999999999999999765 8888888865
No 367
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=26.19 E-value=72 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
..+.+.+..|++.|+.+.++|++....-...+
T Consensus 96 ~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l 127 (226)
T PRK13222 96 PGVKETLAALKAAGYPLAVVTNKPTPFVAPLL 127 (226)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 34556677888899999999999754443333
No 368
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=26.03 E-value=1.3e+02 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=29.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.|+...++|...-..+.+.+.++.++|.-||+||-=
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 3455566799998899999999998888888888765
No 369
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=25.93 E-value=1.2e+02 Score=23.24 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHHHHHHHhC----CCeEEEEccch
Q psy11676 46 HGLALGRLASIVEQVAECHLE----GRECIMVTSGA 77 (131)
Q Consensus 46 ~~l~~~~l~~l~~qIa~L~~~----G~eVILVSSGA 77 (131)
|.+|+..+-..|..+.++.+. ++.||..||.-
T Consensus 42 GPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d 77 (141)
T PF14671_consen 42 GPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSD 77 (141)
T ss_dssp ----HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-
T ss_pred CCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCC
Confidence 568999999999999988877 89999999964
No 370
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.90 E-value=1e+02 Score=21.20 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEccch
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.++.+.+..++++|..||.+|+..
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356677778889999999999963
No 371
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=25.78 E-value=90 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.|+.||..||.+...|..||+|-.
T Consensus 14 vLGRLAS~VAk~Ll~Gd~VVVVNa 37 (202)
T PTZ00068 14 LLGRLASVVAKELLLGQKIVVVRC 37 (202)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEec
Confidence 567888899988889999999854
No 372
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.78 E-value=1.4e+02 Score=23.66 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=26.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ .|.-+|+||-=
T Consensus 174 LDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~ 210 (261)
T PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3555577999988899999999875 47766666643
No 373
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.74 E-value=1.3e+02 Score=22.23 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=24.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
|.++...++|......+.+.+.++.+ +.-++++|
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~s 152 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAK-GKTVIVIA 152 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 34555567999888889999988864 65555554
No 374
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=25.72 E-value=1.3e+02 Score=24.75 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
.+.-++.-..+|+++||+|.++|+....
T Consensus 13 Hv~P~l~la~~L~~rGh~V~~~t~~~~~ 40 (401)
T cd03784 13 DVQPLVALAWALRAAGHEVRVATPPEFA 40 (401)
T ss_pred hHHHHHHHHHHHHHCCCeEEEeeCHhHH
Confidence 3444555556677999999999998644
No 375
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.70 E-value=1.8e+02 Score=20.74 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=31.3
Q ss_pred hCCCeEEEEccchHHHhhhhccccccCChHHHhhhccCCCcccccccCcchhhhHHhHHHHhhhc
Q psy11676 65 LEGRECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPKDHSRSNHFDSENPKTNIYTHIILMFVD 129 (131)
Q Consensus 65 ~~G~eVILVSSGAVaaG~~~L~~~~l~~~~~~qalaa~~llT~~Df~~r~r~~Na~nTi~~~~~~ 129 (131)
...-||+|+=+|.- +..| +....+.|...|.-.. -....+|+.|+|+|..+
T Consensus 50 ~~~peiliiGTG~~--------~~~~-~~~~~~~l~~~gi~vE-----~m~T~~AcrTyN~L~~E 100 (109)
T cd05560 50 ALQPEVILLGTGER--------QRFP-PPALLAPLLARGIGVE-----VMDTQAACRTYNILMGE 100 (109)
T ss_pred hcCCCEEEEecCCC--------CCcC-CHHHHHHHHHcCCeEE-----EECHHHHHHHHHHHHhC
Confidence 34579999988862 2223 3456666766664311 11234899999998754
No 376
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=25.64 E-value=1.3e+02 Score=25.03 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=28.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.+|.++ |.-||+||-=
T Consensus 182 lDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 182 ADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 45556779998888899999999875 8888888743
No 377
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=25.59 E-value=43 Score=25.34 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 49 ALGRLASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 49 ~~~~l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
+++-+..-.+.+.+|.+.|+++++|||-+-
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~ 100 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPP 100 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SS
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCc
Confidence 456667788999999999988888888754
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.54 E-value=1e+02 Score=23.74 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=42.9
Q ss_pred hHhhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 22 r~~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
...+.++.-++|=|+|=.-- + +.+|+..+.+.+++|+...+.|.=||+=|+-.++.-.+.+
T Consensus 71 ~~ai~~adv~~I~VpTP~~~--~-~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~ 131 (185)
T PF03721_consen 71 EEAIKDADVVFICVPTPSDE--D-GSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELL 131 (185)
T ss_dssp HHHHHH-SEEEE----EBET--T-TSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHH
T ss_pred hhhhhccceEEEecCCCccc--c-CCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhh
Confidence 34588999999999987554 3 4689999999999999998887777777776665555433
No 379
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=25.50 E-value=1.2e+02 Score=20.44 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCeEEEEc-cchH
Q psy11676 47 GLALGRLASIVEQVAECHLEGRECIMVT-SGAV 78 (131)
Q Consensus 47 ~l~~~~l~~l~~qIa~L~~~G~eVILVS-SGAV 78 (131)
.+|..-+..|..-+.+++++|.+++++. ++.+
T Consensus 51 ~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v 83 (106)
T TIGR02886 51 FMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAV 83 (106)
T ss_pred EecchHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3666677778888888888899888887 4555
No 380
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=25.49 E-value=1.4e+02 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=27.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+-+.++.++ |.-||+||.=
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 5555779998888888989888664 7777777754
No 381
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=25.42 E-value=1.1e+02 Score=25.33 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=30.7
Q ss_pred eEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEE
Q psy11676 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIM 72 (131)
Q Consensus 30 rIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVIL 72 (131)
-..+|+|-...... | ...+..|.+.+..+++.|+.|++
T Consensus 54 v~~vK~g~~lf~~~--G---~~gi~~l~~~~~~~~~~g~~Vil 91 (261)
T TIGR02127 54 AAVVKPQVAFFERF--G---SEGFKALEEVIAHARSLGLPVLA 91 (261)
T ss_pred ceEEecCHHHHHhc--C---HHHHHHHHHHHHHHHHCCCeEEE
Confidence 35699999988864 2 66778889889999999988776
No 382
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=25.35 E-value=1.3e+02 Score=23.46 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+.|.+++++|+.|+|+|--..
T Consensus 24 ~~~~al~~~~~~g~~v~iaTGR~~ 47 (264)
T COG0561 24 ETKEALARLREKGVKVVLATGRPL 47 (264)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCh
Confidence 445566689999999999986655
No 383
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=25.23 E-value=73 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=23.4
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+||++| |++-+-|..|++.+.+ .| +|++|-.
T Consensus 4 LltNDD--Gi~a~Gi~aL~~~l~~---~g-~V~VvAP 34 (244)
T TIGR00087 4 LLTNDD--GIHSPGIRALYQALKE---LG-EVTVVAP 34 (244)
T ss_pred EEECCC--CCCCHhHHHHHHHHHh---CC-CEEEEeC
Confidence 467765 5999999999988764 47 8888853
No 384
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=25.15 E-value=1.4e+02 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=29.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|-|+...++|...-..+.+.+.++.+.|.-||+||.=
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd 200 (501)
T PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR 200 (501)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3455567799998889999999998888888888875
No 385
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.13 E-value=1.5e+02 Score=23.16 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=26.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++. +|.-||+||.=
T Consensus 171 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~ 204 (250)
T PRK14245 171 DEPASALDPISTAKVEELIHELK-KDYTIVIVTHN 204 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 55556799988888999999985 47777777754
No 386
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=25.09 E-value=1.1e+02 Score=23.54 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=25.6
Q ss_pred CeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 29 krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+.++=+.|-.++..++ -=.-+.|+.|+.... +.|.+|+|||+=
T Consensus 92 ~~~l~~~gi~~~~~~g--~EADDvIatla~~~~---~~~~~v~IvS~D 134 (169)
T PF02739_consen 92 KELLEALGIPVLEVPG--YEADDVIATLAKKAS---EEGFEVIIVSGD 134 (169)
T ss_dssp HHHHHHTTSEEEEETT--B-HHHHHHHHHHHHH---HTTCEEEEE-SS
T ss_pred HHHHHHCCCCEecCCC--CcHHHHHHHHHhhhc---cCCCEEEEEcCC
Confidence 3444355666666542 123456677777654 568999999985
No 387
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=25.08 E-value=98 Score=22.73 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhC------------CCeEEEEccch
Q psy11676 52 RLASIVEQVAECHLE------------GRECIMVTSGA 77 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~------------G~eVILVSSGA 77 (131)
.+..||..||.+-.- |..||+|-.--
T Consensus 10 ~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~ 47 (114)
T cd00392 10 VLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEK 47 (114)
T ss_pred chHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccE
Confidence 567889999998888 89999886543
No 388
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=25.05 E-value=86 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCeEEEEccch
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGA 77 (131)
...+.+..|+++|+.+.++|++-
T Consensus 86 g~~~~l~~L~~~g~~~~i~S~~~ 108 (214)
T PRK13288 86 TVYETLKTLKKQGYKLGIVTTKM 108 (214)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCC
Confidence 45667888999999999999985
No 389
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=25.01 E-value=1.5e+02 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=25.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|.++...++|......+.+.+.++. +|.-||++|.
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh 155 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITH 155 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEec
Confidence 3455456799888888888888885 5777777764
No 390
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=24.96 E-value=1e+02 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+++.+.+..++|..|++++||=-
T Consensus 63 ~~~~~~~i~~~~~~g~~V~~l~~GDP 88 (236)
T TIGR01469 63 QEEINRLLVELAREGKKVVRLKGGDP 88 (236)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCcCc
Confidence 35566667666678999999998843
No 391
>PRK08284 precorrin 6A synthase; Provisional
Probab=24.90 E-value=88 Score=25.69 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
.+++.|++..++|.+|+++++|=-..
T Consensus 91 ~~~~~i~~~l~~g~~Vv~l~~GDP~~ 116 (253)
T PRK08284 91 LYERLIAEELPDGGTGAFLVWGDPSL 116 (253)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCcch
Confidence 34566888888999999999997633
No 392
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.87 E-value=63 Score=23.31 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
+.|.+.+.++.++ +++||+| |.++.|.
T Consensus 46 ~~i~~~i~~~~~~-~Dlvitt-GG~g~g~ 72 (133)
T cd00758 46 DSIRAALIEASRE-ADLVLTT-GGTGVGR 72 (133)
T ss_pred HHHHHHHHHHHhc-CCEEEEC-CCCCCCC
Confidence 4566667766665 8877776 5566663
No 393
>PF12910 RelB_N: Antitoxin of toxin-antitoxin stability system N-terminal; PDB: 3K6Q_C.
Probab=24.79 E-value=57 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 50 LGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
...|..|++++. .|+++++|+
T Consensus 10 R~~ls~l~d~v~----~~~~~viI~ 30 (46)
T PF12910_consen 10 RNNLSKLIDRVV----NGEEVVIIT 30 (46)
T ss_dssp HHTHHHHHHHHH----HT--EE-EE
T ss_pred HHhHHHHHHHHH----cCCCeEEEE
Confidence 345677888877 578888665
No 394
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=24.75 E-value=1.4e+02 Score=23.86 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=26.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|......+.+.+.++.++ |.-||+||.=
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 4445679998888888889888775 7777777643
No 395
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.72 E-value=1.6e+02 Score=22.32 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=27.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-+|++|+=
T Consensus 142 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 142 WDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 35555679998888899999999876 5567777763
No 396
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=24.71 E-value=1.4e+02 Score=25.09 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=29.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.+++++ |.-+++||-=
T Consensus 177 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 177 VADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 345556779998888999999999875 8888888843
No 397
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.67 E-value=1.4e+02 Score=23.23 Aligned_cols=34 Identities=26% Similarity=0.142 Sum_probs=26.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.+ |.-|++||.=
T Consensus 167 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 200 (246)
T PRK14269 167 DEPTSALDPISSGVIEELLKELSH-NLSMIMVTHN 200 (246)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 444567999888889999998865 8777777764
No 398
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=24.64 E-value=1.1e+02 Score=24.41 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 49 ALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 49 ~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
..+||..|.+.+..+.+.|..+||+-|.
T Consensus 49 R~pWL~~l~~~~~~~~~~~~~~vi~CSA 76 (161)
T COG3265 49 RWPWLEALGDAAASLAQKNKHVVIACSA 76 (161)
T ss_pred hhHHHHHHHHHHHHhhcCCCceEEecHH
Confidence 5899999999999998888866666664
No 399
>PRK08238 hypothetical protein; Validated
Probab=24.57 E-value=90 Score=28.04 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+..+.+.+++++|+++++||+..-
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~ 99 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDE 99 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCH
Confidence 36788899999999999999998753
No 400
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=24.57 E-value=1.5e+02 Score=22.87 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=25.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ +.-||+||.=
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 201 (242)
T TIGR03411 167 LDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHD 201 (242)
T ss_pred ecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 3555567999888889999998866 6666666553
No 401
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.55 E-value=1.6e+02 Score=22.89 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++..+ |.-|+++|.=
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5555789998888888888888765 8887777753
No 402
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=24.49 E-value=1.5e+02 Score=22.58 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=26.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.++.++ .-||++|.=
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~ 199 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN 199 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEecc
Confidence 345555679998888999999998776 666666654
No 403
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.44 E-value=3e+02 Score=20.55 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=33.6
Q ss_pred CCeEEEEeCccccccCCCC----CCcH-HHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 28 ARRLVVKLGSAVITREDEH----GLAL-GRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 28 ~krIVIKiGSs~Lt~~~~~----~l~~-~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.+.|+|=+|++=+...... ..+. .+...+.+-|..+++.|.+||+.|.
T Consensus 75 p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~ 127 (204)
T cd01830 75 VRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATI 127 (204)
T ss_pred CCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecC
Confidence 4679999999976543210 1233 4557788888888889999998774
No 404
>PRK03918 chromosome segregation protein; Provisional
Probab=24.37 E-value=1.3e+02 Score=27.97 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=25.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
+.+...+++|......+++.+..+...|..||+||.=
T Consensus 817 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~ 853 (880)
T PRK03918 817 ILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHD 853 (880)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3454456788888778888887777667777777653
No 405
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=24.24 E-value=64 Score=25.04 Aligned_cols=41 Identities=5% Similarity=0.048 Sum_probs=28.3
Q ss_pred ccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc-hHH
Q psy11676 37 SAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG-AVA 79 (131)
Q Consensus 37 Ss~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG-AVa 79 (131)
++++++..+ -.......+.+-+..|+++|+.+.++||. ...
T Consensus 33 ~~~~~~~~~--~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~ 74 (174)
T TIGR01685 33 NSIIIDKSG--TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE 74 (174)
T ss_pred CCeEEeCCC--CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH
Confidence 444554432 23334467888888899999999999987 543
No 406
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=24.22 E-value=1e+02 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
...+.|.+|++.|+.|+++|.=...
T Consensus 22 ~~~~~i~~l~~~g~~~~~~TGR~~~ 46 (215)
T TIGR01487 22 RAIEAIRKAEKKGIPVSLVTGNTVP 46 (215)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcch
Confidence 4567788999999999999876543
No 407
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=24.19 E-value=1.5e+02 Score=22.57 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 44 DEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 44 ~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
|+..++...+..+++.|.+..+.|.+|++=-
T Consensus 82 D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC 112 (180)
T COG2453 82 DGTVPDLEDLDKIVDFIEEALSKGKKVVVHC 112 (180)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 3345788999999999999999998666544
No 408
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=24.19 E-value=1e+02 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHh------------CCCeEEEEccchH
Q psy11676 52 RLASIVEQVAECHL------------EGRECIMVTSGAV 78 (131)
Q Consensus 52 ~l~~l~~qIa~L~~------------~G~eVILVSSGAV 78 (131)
.+..||.+||.+.. .|..||+|-+--|
T Consensus 24 ~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki 62 (144)
T PRK09216 24 VLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKV 62 (144)
T ss_pred chHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCcee
Confidence 56788999999888 7999999876543
No 409
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=24.17 E-value=1.1e+02 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
...+.+.+|.++|..+++||.-....-...++
T Consensus 21 ~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~ 52 (204)
T TIGR01484 21 ETIEALERLREAGVKVVLVTGRSLAEIKELLK 52 (204)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 45677888999999999999887655554444
No 410
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=24.03 E-value=76 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHh-CCCeEEEEccchHHHhhh
Q psy11676 54 ASIVEQVAECHL-EGRECIMVTSGAVAFGKQ 83 (131)
Q Consensus 54 ~~l~~qIa~L~~-~G~eVILVSSGAVaaG~~ 83 (131)
+.|.+.+.++.+ ++.++||.| |.++.|..
T Consensus 49 ~~i~~~l~~~~~~~~~DlVItt-GGtg~g~~ 78 (163)
T TIGR02667 49 YQIRAQVSAWIADPDVQVILIT-GGTGFTGR 78 (163)
T ss_pred HHHHHHHHHHHhcCCCCEEEEC-CCcCCCCC
Confidence 456666666643 578987776 66777743
No 411
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=23.99 E-value=1.5e+02 Score=24.66 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=28.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-+|+||.=
T Consensus 124 LDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 124 LDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35555789998888899999998765 8888888864
No 412
>PLN02645 phosphoglycolate phosphatase
Probab=23.90 E-value=80 Score=26.05 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=33.5
Q ss_pred hhccCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 24 QLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 24 ~l~~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+.+.+.+++=+= .+|-+.+ . .+..-.+.|..|+++|+.++++|+.+
T Consensus 24 ~~~~~~~~~~D~D-Gtl~~~~-~-----~~~ga~e~l~~lr~~g~~~~~~TN~~ 70 (311)
T PLN02645 24 LIDSVETFIFDCD-GVIWKGD-K-----LIEGVPETLDMLRSMGKKLVFVTNNS 70 (311)
T ss_pred HHHhCCEEEEeCc-CCeEeCC-c-----cCcCHHHHHHHHHHCCCEEEEEeCCC
Confidence 3556777887773 2344332 1 24556899999999999999999976
No 413
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.90 E-value=83 Score=26.37 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCC-eEEEEccc
Q psy11676 56 IVEQVAECHLEGR-ECIMVTSG 76 (131)
Q Consensus 56 l~~qIa~L~~~G~-eVILVSSG 76 (131)
|..+|..|++.|. |+++|++|
T Consensus 34 i~~~i~~L~~~gi~e~vvV~~g 55 (239)
T COG1213 34 IYRTIENLAKAGITEFVVVTNG 55 (239)
T ss_pred HHHHHHHHHHcCCceEEEEecc
Confidence 7789999999998 99999987
No 414
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.87 E-value=72 Score=26.73 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=21.4
Q ss_pred CccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 36 GSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 36 GSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++.++|... +||-. ++|++++ ++|+.||||.=
T Consensus 7 ~~~lITGAS-sGIG~----~~A~~lA---~~g~~liLvaR 38 (265)
T COG0300 7 KTALITGAS-SGIGA----ELAKQLA---RRGYNLILVAR 38 (265)
T ss_pred cEEEEECCC-chHHH----HHHHHHH---HCCCEEEEEeC
Confidence 345677765 34444 5666666 68999999963
No 415
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.86 E-value=70 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.4
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 47 GLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 47 ~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
...-.+|..++.+.. ..+.+|++|||=
T Consensus 77 ~tAD~~Ie~~v~~~~---~~~~~v~VVTSD 103 (166)
T PF05991_consen 77 ETADDYIERLVRELK---NRPRQVTVVTSD 103 (166)
T ss_pred CCHHHHHHHHHHHhc---cCCCeEEEEeCC
Confidence 345556666665543 558999999994
No 416
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=23.86 E-value=79 Score=24.69 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCeEEEEccchH
Q psy11676 56 IVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+.|..|++.| .+++||+|--
T Consensus 73 a~ell~~lk~~~-~~~IVS~~~~ 94 (203)
T TIGR02137 73 AVEFVDWLRERF-QVVILSDTFY 94 (203)
T ss_pred HHHHHHHHHhCC-eEEEEeCChH
Confidence 445677777765 9999999954
No 417
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=23.79 E-value=1.5e+02 Score=24.89 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=28.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-||+||-=
T Consensus 164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45556789998888899999998765 7888877743
No 418
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=23.69 E-value=1e+02 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 56 IVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
..+.|.+|+++|+.|+++|.-.-..-...+
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~ 50 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ 50 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 457888899999999999988765443333
No 419
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=23.60 E-value=2e+02 Score=25.50 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 49 ALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 49 ~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+..-+++-++||.+|.+.|.|+|-|+=.-..
T Consensus 37 ~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~ 67 (360)
T PRK00366 37 DTADVEATVAQIKRLARAGCEIVRVAVPDME 67 (360)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEccCCHH
Confidence 3456789999999999999999999865443
No 420
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=23.55 E-value=75 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 47 GLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 47 ~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
.+.-....+-++.|.+-++.|..|-+-|||+|-+-.-..+
T Consensus 99 elkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fg 138 (229)
T COG4229 99 ELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFG 138 (229)
T ss_pred ccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhc
Confidence 3545555778899999999999999999999987654443
No 421
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=23.55 E-value=1.6e+02 Score=23.14 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-|++||.=
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 34545679988878888888888664 7778887753
No 422
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=23.39 E-value=75 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEccc
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.+..+.|.+|+++|+++.++|..
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD 152 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGD 152 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESS
T ss_pred hhhhhhhhhhhccCcceeeeecc
Confidence 45778889999999999999954
No 423
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=23.35 E-value=93 Score=25.19 Aligned_cols=26 Identities=8% Similarity=-0.070 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
..+.+.+..|+++|+.+.||||+.-.
T Consensus 112 pg~~e~L~~L~~~g~~l~I~Tn~~~~ 137 (260)
T PLN03243 112 PGSREFVQALKKHEIPIAVASTRPRR 137 (260)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCcCHH
Confidence 34666788999999999999999643
No 424
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=23.35 E-value=1.5e+02 Score=24.88 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
.++...++|...-..+.+.+.+|+++ |.-+++||.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTH 220 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45556779998888899999999875 888888874
No 425
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.29 E-value=1.6e+02 Score=23.75 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=27.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35555779998888888888888764 7777777753
No 426
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.28 E-value=1.1e+02 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+++.+.+...+|..|++++||=-
T Consensus 67 ~~~~~~i~~~~~~g~~V~~l~~GDP 91 (249)
T PRK06136 67 EEINRLLVDYARKGKVVVRLKGGDP 91 (249)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4566666666677999999999854
No 427
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=23.24 E-value=1.6e+02 Score=23.04 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=26.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CC-eEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GR-ECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~-eVILVSS 75 (131)
|.++...++|...-..+.+.+.++.++ |. .|++||.
T Consensus 153 llDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith 190 (213)
T cd03277 153 VVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITP 190 (213)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEch
Confidence 445555678888888888888888776 64 5777774
No 428
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=23.24 E-value=1.6e+02 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=28.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35555789998888999999999876 7778888754
No 429
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.05 E-value=1.7e+02 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=26.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ |.-||+||.=
T Consensus 178 lDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~ 212 (258)
T PRK14268 178 FDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHN 212 (258)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence 3555567999888889898988864 7777777764
No 430
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=22.99 E-value=1.6e+02 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=30.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccch
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSGA 77 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSGA 77 (131)
|.++...++|...-..+.+.+.++.++ |.-+|+||.=-
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 345556789998888999999999876 88899998763
No 431
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=22.96 E-value=1.4e+02 Score=22.45 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=25.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++. +|.-+|+||.=
T Consensus 150 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~ 183 (207)
T cd03369 150 DEATASIDYATDALIQKTIREEF-TNSTILTIAHR 183 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 44456799988888888888885 47777777754
No 432
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=22.89 E-value=29 Score=24.67 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=36.0
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
...||.|=.||+....... -....+..+++.++.| |.|||+-.+++.+.+.
T Consensus 39 ~RpRVcvT~G~~~~~~~g~--~~~~~l~~ll~ala~l---dvEvV~a~~~~~~~~l 89 (97)
T PF06722_consen 39 GRPRVCVTLGTSVRMFFGP--GGVPLLRRLLEALAGL---DVEVVVALPAAQRAEL 89 (97)
T ss_dssp SSEEEEEEETHHHCHHHSC--HHHCHHHHHHHHHHTS---SSEEEEEETTCCCGGC
T ss_pred CCCEEEEEcCCCccccccc--cchHHHHHHHHHHhhC---CcEEEEECCHHHHHhh
Confidence 4579999999998763211 1245667777777755 9999999888875554
No 433
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=22.88 E-value=1.4e+02 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.5
Q ss_pred hCCCeEEEEccchHHH
Q psy11676 65 LEGRECIMVTSGAVAF 80 (131)
Q Consensus 65 ~~G~eVILVSSGAVaa 80 (131)
..|..|++||+|.+-.
T Consensus 159 ~~~~~vliVsHG~vir 174 (236)
T PTZ00123 159 LAGKKVLVAAHGNSLR 174 (236)
T ss_pred hCCCeEEEEeCHHHHH
Confidence 3577899999998743
No 434
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=22.76 E-value=85 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=22.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
||++| |++-+-|..|++.+.+ .| +|++|-
T Consensus 10 ltNDD--Gi~a~Gi~aL~~~l~~---~g-~V~VvA 38 (257)
T PRK13932 10 VCNDD--GIEGEGIHVLAASMKK---IG-RVTVVA 38 (257)
T ss_pred EECCC--CCCCHHHHHHHHHHHh---CC-CEEEEc
Confidence 67765 5998999999988764 47 788884
No 435
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=22.72 E-value=1e+02 Score=25.63 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=23.0
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
+||++| |++-+-|..|++.+.+ +++|++|-
T Consensus 4 LvtNDD--Gi~apGl~aL~~~l~~----~~~V~VvA 33 (253)
T PRK13933 4 LLTNDD--GINAEGINTLAELLSK----YHEVIIVA 33 (253)
T ss_pred EEEcCC--CCCChhHHHHHHHHHh----CCcEEEEc
Confidence 467765 5888889999988753 56999885
No 436
>PF14090 HTH_39: Helix-turn-helix domain
Probab=22.48 E-value=87 Score=20.51 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEc
Q psy11676 53 LASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVS 74 (131)
+..++.-|.+|+++||.|.=+.
T Consensus 27 i~~~~aRI~eLR~~G~~I~t~~ 48 (70)
T PF14090_consen 27 IMRLAARISELRKKGYPIVTEW 48 (70)
T ss_pred CCCHHHHHHHHHHcCCeeeEEE
Confidence 3568899999999999886544
No 437
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=22.47 E-value=90 Score=24.57 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
.+.+.+..|+++|+.+.|||++.-.
T Consensus 112 gv~e~L~~L~~~g~~l~I~Tn~~~~ 136 (248)
T PLN02770 112 GLYKLKKWIEDRGLKRAAVTNAPRE 136 (248)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCCHH
Confidence 4677888899999999999999643
No 438
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=22.43 E-value=1.7e+02 Score=22.30 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=22.6
Q ss_pred cccCCCCCCcHHHHHHHHH--HHHHHHhCCCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVE--QVAECHLEGRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~--qIa~L~~~G~eVILVSS 75 (131)
|.++...++|......+.+ .+..+++.|.-+|++|-
T Consensus 163 llDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH 200 (218)
T cd03290 163 FLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200 (218)
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 3455556788877777776 45556566666666653
No 439
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=22.42 E-value=1e+02 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=23.2
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
+||++| |++-+-|..|++.+++ +++|++|-
T Consensus 4 LlTNDD--Gi~a~Gi~aL~~~l~~----~~~V~VvA 33 (253)
T PRK13935 4 LVTNDD--GITSPGIIILAEYLSE----KHEVFVVA 33 (253)
T ss_pred EEECCC--CCCCHHHHHHHHHHHh----CCcEEEEc
Confidence 467765 5999999999988863 46898885
No 440
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=22.40 E-value=1.2e+02 Score=24.21 Aligned_cols=31 Identities=16% Similarity=-0.037 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHHHhhhhc
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVaaG~~~L 85 (131)
...+.|.+|+++|+.++++|+-....-...+
T Consensus 25 ~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~ 55 (273)
T PRK00192 25 PAKPALKALKEKGIPVIPCTSKTAAEVEVLR 55 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 3556788899999999999987654433333
No 441
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=22.40 E-value=1.1e+02 Score=22.83 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 57 VEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 57 ~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
.+.+..|++.|+.+.|+|++....-...|.
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~ 141 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLT 141 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 566777889999999999997554444443
No 442
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=22.35 E-value=1.5e+02 Score=26.06 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=29.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|...-..+.+.|.++.++ |.-||+||-=
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 345556789999989999999999875 7888888875
No 443
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=22.30 E-value=1e+02 Score=23.02 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHh------------CCCeEEEE-ccchHHHh
Q psy11676 52 RLASIVEQVAECHL------------EGRECIMV-TSGAVAFG 81 (131)
Q Consensus 52 ~l~~l~~qIa~L~~------------~G~eVILV-SSGAVaaG 81 (131)
.++.||..||.+.. .|..||+| +..++-.|
T Consensus 10 ~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG 52 (128)
T PF00572_consen 10 ILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTG 52 (128)
T ss_dssp BHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESS
T ss_pred chHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecC
Confidence 46788899999888 99999999 44554445
No 444
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=22.20 E-value=1.8e+02 Score=24.27 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=29.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.+|++ .|.-+++||-=
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44555678999888889999999987 58888888854
No 445
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=22.16 E-value=1.7e+02 Score=19.56 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=34.5
Q ss_pred cCCeEEEEeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc-cchHHH
Q psy11676 27 YARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVT-SGAVAF 80 (131)
Q Consensus 27 ~~krIVIKiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS-SGAVaa 80 (131)
..+.+|+-...- ..+|..-+..|.+-+.+++++|.+++++. ++.+.-
T Consensus 38 ~~~~vilDls~v-------~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~ 85 (100)
T cd06844 38 AGKTIVIDISAL-------EFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAVRI 85 (100)
T ss_pred CCCEEEEECCCC-------cEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 367888877311 23667788888888999999999999984 666633
No 446
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=22.10 E-value=2.7e+02 Score=24.94 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=41.4
Q ss_pred HhhccCCeEEEEeCccccccC--CCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 23 GQLKYARRLVVKLGSAVITRE--DEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 23 ~~l~~~krIVIKiGSs~Lt~~--~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+.++.+.-++|=|||-+-.+. .+..+|+..+.+.+++|++..+.|.=||+=|+--++
T Consensus 74 ~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 74 KHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred HHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 357899999999999863321 012689999999999999988776655554544443
No 447
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.06 E-value=1.7e+02 Score=22.71 Aligned_cols=34 Identities=21% Similarity=0.081 Sum_probs=25.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.+ |.-||++|.=
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14247 171 DEPTANLDPENTAKIESLFLELKK-DMTIVLVTHF 204 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 555567999888899999998854 7666666643
No 448
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=21.99 E-value=1.5e+02 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEE-EEccch
Q psy11676 50 LGRLASIVEQVAECHLEGRECI-MVTSGA 77 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVI-LVSSGA 77 (131)
...+..+.+.+.+|.+.|++|. ++|.+|
T Consensus 11 ~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 11 HCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred HHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 3455566688889999999994 455555
No 449
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=21.88 E-value=1.1e+02 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHh-------CCCeEEEEccchHHHh
Q psy11676 51 GRLASIVEQVAECHL-------EGRECIMVTSGAVAFG 81 (131)
Q Consensus 51 ~~l~~l~~qIa~L~~-------~G~eVILVSSGAVaaG 81 (131)
+........+.++.+ .+..|++||.|.+-..
T Consensus 121 ~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~ 158 (204)
T TIGR03848 121 QVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKS 158 (204)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHH
Confidence 334444444555432 3567999999987433
No 450
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.86 E-value=99 Score=25.34 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEccch
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
....+.+..|++.|++|++||.=.
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 344567888999999999999653
No 451
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=21.86 E-value=1e+02 Score=29.43 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE
Q psy11676 51 GRLASIVEQVAECHLEGRECIM 72 (131)
Q Consensus 51 ~~l~~l~~qIa~L~~~G~eVIL 72 (131)
.++.++=.-|.+||++|.+|||
T Consensus 262 ~~i~EfK~mV~~lHkaGI~VIL 283 (697)
T COG1523 262 TRIKEFKDMVKALHKAGIEVIL 283 (697)
T ss_pred hHHHHHHHHHHHHHHcCCEEEE
Confidence 4788899999999999999997
No 452
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=21.81 E-value=99 Score=24.86 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
+....+.|.+|+++|+.+++||+.+
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 3446778889999999999999864
No 453
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=21.81 E-value=91 Score=24.97 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 53 LASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+..-++.|.+|+++|+.++++|-
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn 45 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTN 45 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEEC
Confidence 45678889999999999999994
No 454
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=21.78 E-value=1e+02 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=24.6
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVT 74 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVS 74 (131)
+||++| |+.-+-|..|++.+. .+++|++|-
T Consensus 4 LlTNDD--Gi~a~Gi~aL~~al~----~~~dV~VVA 33 (252)
T COG0496 4 LLTNDD--GIHAPGIRALARALR----EGADVTVVA 33 (252)
T ss_pred EEecCC--ccCCHHHHHHHHHHh----hCCCEEEEc
Confidence 467765 588888999988877 789999996
No 455
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.78 E-value=1.2e+02 Score=23.82 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 46 HGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 46 ~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+.++... .+.|.+|+++|+.|+++|-=...
T Consensus 18 ~~i~~~~----~~ai~~l~~~G~~~~iaTGR~~~ 47 (272)
T PRK15126 18 HHLGEKT----LSTLARLRERDITLTFATGRHVL 47 (272)
T ss_pred CcCCHHH----HHHHHHHHHCCCEEEEECCCCHH
Confidence 3466644 56778889999999999866544
No 456
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.67 E-value=1.8e+02 Score=22.74 Aligned_cols=34 Identities=21% Similarity=0.075 Sum_probs=25.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+.+.++.+ |.-||+||-=
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~ 207 (251)
T PRK14244 174 DEPCSALDPVATNVIENLIQELKK-NFTIIVVTHS 207 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 544567999888888899988854 7767766654
No 457
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=21.67 E-value=1.3e+02 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCeEEEEccchH
Q psy11676 56 IVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 56 l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+.|.+|++.|+.++++|.=..
T Consensus 20 ~~~al~~l~~~Gi~~~~aTGR~~ 42 (225)
T TIGR01482 20 ALEAIRKAESVGIPVVLVTGNSV 42 (225)
T ss_pred HHHHHHHHHHCCCEEEEEcCCch
Confidence 34667889999999999986443
No 458
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=21.65 E-value=1.3e+02 Score=24.28 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+++.+.+....|.+|++++||=-
T Consensus 78 ~~~~~~~i~~~~~~g~~Vvvl~~GDP 103 (263)
T PLN02625 78 QEEIHELLLSFAEAGKTVVRLKGGDP 103 (263)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 45667777677678999999999865
No 459
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=21.64 E-value=1.1e+02 Score=24.20 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCeEEEEccchH
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
...+.+..|+++|+.+.|||++.-
T Consensus 105 g~~elL~~L~~~g~~l~I~T~~~~ 128 (267)
T PRK13478 105 GVLEVIAALRARGIKIGSTTGYTR 128 (267)
T ss_pred CHHHHHHHHHHCCCEEEEEcCCcH
Confidence 345677899999999999998854
No 460
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=21.63 E-value=1.6e+02 Score=25.78 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=28.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
|-++...++|......+.+.+.++.+ .|.-||+||-=
T Consensus 191 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 34555677999999999999999865 48888888764
No 461
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.60 E-value=1.6e+02 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=31.6
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
+|-|+...++|......|.+.+.+|+++|.-||+|+-
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeH 547 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEH 547 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3456656789999999999999999999999999975
No 462
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=21.39 E-value=1.1e+02 Score=22.88 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeEEEEccchHHHhhhhcc
Q psy11676 57 VEQVAECHLEGRECIMVTSGAVAFGKQKLA 86 (131)
Q Consensus 57 ~~qIa~L~~~G~eVILVSSGAVaaG~~~L~ 86 (131)
.+.+..|.+. ++++|.|||.-.-....+.
T Consensus 48 ~eFL~~l~~~-yei~I~Ts~~~~yA~~il~ 76 (162)
T TIGR02251 48 DEFLERVSKW-YELVIFTASLEEYADPVLD 76 (162)
T ss_pred HHHHHHHHhc-CEEEEEcCCcHHHHHHHHH
Confidence 3556666665 9999999997544444443
No 463
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=21.36 E-value=1.9e+02 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=30.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.|+...++|......+.+-+.+++++|.-+++||.=.
T Consensus 168 lDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 3555578999999999999999988898988888764
No 464
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=21.36 E-value=1.8e+02 Score=26.72 Aligned_cols=34 Identities=12% Similarity=0.243 Sum_probs=27.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
|+.+..++...-+.|-+.|.+|+++|.-||.||=
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4444456666678899999999999999999984
No 465
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=21.31 E-value=1.3e+02 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 55 SIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
.+.+.+..|+++|+.+.|||++....-.
T Consensus 103 g~~e~L~~L~~~g~~l~IvT~~~~~~~~ 130 (253)
T TIGR01422 103 GVIEVIAYLRARGIKIGSTTGYTREMMD 130 (253)
T ss_pred CHHHHHHHHHHCCCeEEEECCCcHHHHH
Confidence 4566788999999999999998754433
No 466
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=21.28 E-value=1.7e+02 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHhCCC--eEEEEccchHH
Q psy11676 49 ALGRLASIVEQVAECHLEGR--ECIMVTSGAVA 79 (131)
Q Consensus 49 ~~~~l~~l~~qIa~L~~~G~--eVILVSSGAVa 79 (131)
-.+....+...+.++..... .|++||.|++-
T Consensus 125 ~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~i 157 (208)
T COG0406 125 LADVSKRVVAALAELLRSPPGNNVLVVSHGGVI 157 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHH
Confidence 34455667777777777655 49999999875
No 467
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=21.25 E-value=1.3e+02 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE
Q psy11676 50 LGRLASIVEQVAECHLEGRECIM 72 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVIL 72 (131)
+.-++++.+-|.++|++|.+||+
T Consensus 48 ~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 48 FGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp TBHHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhhhhhhhhhccccccceEEE
Confidence 34567888889999999999997
No 468
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.21 E-value=1.7e+02 Score=22.36 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 50 LGRLASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 50 ~~~l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
.+.|...+++++++..++.+|.++-.|+=+
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~ 50 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSA 50 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhH
Confidence 478899999999999999999999887643
No 469
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=21.17 E-value=96 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
...+.+.+..|+++|+.++|||+-
T Consensus 199 ~pgV~e~L~~L~~~Gy~IvIvTNQ 222 (526)
T TIGR01663 199 FPEIPEKLKELEADGFKICIFTNQ 222 (526)
T ss_pred ccCHHHHHHHHHHCCCEEEEEECC
Confidence 467899999999999999999983
No 470
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=21.11 E-value=1.7e+02 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=28.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
.|+...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 35555679998888899999998876 7778888754
No 471
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=21.10 E-value=1.6e+02 Score=25.05 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=29.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.|+...++|...-..+.+.+.++.++ |.-||+||.=
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 345555679998888899999998775 8888888865
No 472
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=21.08 E-value=1.3e+02 Score=23.03 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHh------------CCCeEEEEccchH
Q psy11676 52 RLASIVEQVAECHL------------EGRECIMVTSGAV 78 (131)
Q Consensus 52 ~l~~l~~qIa~L~~------------~G~eVILVSSGAV 78 (131)
.++.||..||.+-. .|..||+|-+--|
T Consensus 22 ~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki 60 (140)
T TIGR01066 22 TLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKV 60 (140)
T ss_pred chHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEE
Confidence 56788888888887 7999999876543
No 473
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.96 E-value=1.8e+02 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=26.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|...-..+.+.+.++.+ +.-||+||.-
T Consensus 180 DEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~ 213 (259)
T PRK14274 180 DEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHN 213 (259)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence 555567999888889999999865 7777777764
No 474
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.91 E-value=1.9e+02 Score=23.08 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=26.4
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCC-CeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEG-RECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G-~eVILVSS 75 (131)
.++...++|......+.+.+.++.++| .-||+||.
T Consensus 166 LDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH 201 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEe
Confidence 344556799998899999999988765 66666664
No 475
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=20.78 E-value=1.8e+02 Score=24.38 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEcc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTS 75 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSS 75 (131)
|.++...++|...-..+.+.+.+++++ |.-+++||-
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH 220 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 345556789998888899999999775 777888873
No 476
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=20.78 E-value=1.9e+02 Score=21.33 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHHHHHh-CCCeEEEEccc
Q psy11676 46 HGLALGRLASIVEQVAECHL-EGRECIMVTSG 76 (131)
Q Consensus 46 ~~l~~~~l~~l~~qIa~L~~-~G~eVILVSSG 76 (131)
..++.+.+.+|.+.+..+.. ...++|+++|.
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~ 52 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGA 52 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC
Confidence 35899999999999999886 46788888874
No 477
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=20.75 E-value=1.8e+02 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=29.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC--CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE--GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~--G~eVILVSSG 76 (131)
|.++...++|...-..+-+.+.++.++ |.-+|+||-=
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 345555679998888999999999887 7889999865
No 478
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=20.74 E-value=1.1e+02 Score=24.66 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+..+.+.+..|+++|+.+.+||++...
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~ivTn~~~~ 129 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMALITNKPER 129 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCcHH
Confidence 356677888899999999999998543
No 479
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=20.48 E-value=1.8e+02 Score=27.13 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=29.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|.++...++|......+.+.+.++.++|.-||+||--
T Consensus 166 LLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHd 202 (549)
T PRK13545 166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202 (549)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3455556799998889999999998888888888754
No 480
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=20.48 E-value=79 Score=23.25 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=20.6
Q ss_pred EeCccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 34 KLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 34 KiGSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
|||.++..+-- ...|.++++.+..-...|+++|++.=.
T Consensus 57 KvG~AV~RNRi-----KR~lRe~~R~~~~~l~~g~D~Viiar~ 94 (122)
T PRK03459 57 AVGNAVIRHRV-----SRRLRHICADIVDQVPETHHVVIRALP 94 (122)
T ss_pred eccchhHHHHH-----HHHHHHHHHHhhhccCCCcEEEEEECc
Confidence 56665554321 234455555544433458999887543
No 481
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=20.48 E-value=1.7e+02 Score=28.75 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=31.9
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 39 VITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.|-++...++|......|.+.+.+|+++|.-||+|+==
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34465567899999999999999999999999999864
No 482
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=20.38 E-value=2e+02 Score=22.63 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=25.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
.++...++|...-..+.+.+.++.+ |.-||++|.=
T Consensus 180 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~ 214 (260)
T PRK10744 180 LDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHN 214 (260)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 3555567999888888899988864 7666666653
No 483
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.35 E-value=1.3e+02 Score=23.90 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=29.6
Q ss_pred cCCeEEEEe-CccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccchHHH
Q psy11676 27 YARRLVVKL-GSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAF 80 (131)
Q Consensus 27 ~~krIVIKi-GSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGAVaa 80 (131)
..+-|+.=+ || |.+++ +.+.. ...+.|.+|+++|+.++++|.=+...
T Consensus 6 ~~~lI~~DlDGT--LL~~~-~~i~~----~~~~ai~~l~~~Gi~~viaTGR~~~~ 53 (271)
T PRK03669 6 DPLLIFTDLDGT--LLDSH-TYDWQ----PAAPWLTRLREAQVPVILCSSKTAAE 53 (271)
T ss_pred CCeEEEEeCccC--CcCCC-CcCcH----HHHHHHHHHHHcCCeEEEEcCCCHHH
Confidence 344555556 43 33333 23333 34466889999999999999877654
No 484
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=1.6e+02 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=34.8
Q ss_pred CccccccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 36 GSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 36 GSs~Lt~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
|++++.++.-+.+|...+-.....|+++..+|++||+.|=-+
T Consensus 556 ~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHnt 597 (758)
T COG4694 556 NKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNT 597 (758)
T ss_pred CeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccc
Confidence 566666655567899999889999999999999999998764
No 485
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.28 E-value=2.9e+02 Score=19.64 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=29.3
Q ss_pred CeEEEEccchHHHhhhhccccccCChHHHhhhccCCCc-ccccccCcchhhhHHhHHHHhhhc
Q psy11676 68 RECIMVTSGAVAFGKQKLAQELLMSLSMRETLSPKDHS-RSNHFDSENPKTNIYTHIILMFVD 129 (131)
Q Consensus 68 ~eVILVSSGAVaaG~~~L~~~~l~~~~~~qalaa~~ll-T~~Df~~r~r~~Na~nTi~~~~~~ 129 (131)
-|++|+=+|+= +..| +....+.|...|.- --+| ..||+.|.|+|..+
T Consensus 53 peiliiGTG~~--------~~~~-~~~~~~~l~~~gI~vE~m~------T~aAcrTyNiL~~E 100 (109)
T cd00248 53 PDILLIGTGAE--------IAFL-PRALRAALRAAGIGVEVMS------TGAACRTYNVLLSE 100 (109)
T ss_pred CCEEEEcCCCC--------CCcC-CHHHHHHHHHcCCeEEEeC------cHHHHHHHHHHHhC
Confidence 89999988862 1222 23556666666643 1122 24899999998754
No 486
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=20.20 E-value=1.9e+02 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=29.5
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhC-CCeEEEEccc
Q psy11676 40 ITREDEHGLALGRLASIVEQVAECHLE-GRECIMVTSG 76 (131)
Q Consensus 40 Lt~~~~~~l~~~~l~~l~~qIa~L~~~-G~eVILVSSG 76 (131)
|.++...++|...-..+.+.+.+++++ |.-+|+||-=
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345555679988888899999998876 8999999964
No 487
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.19 E-value=2e+02 Score=22.43 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=24.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
++...++|......+.+.+.++. +|.-||++|-
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH 207 (254)
T PRK14273 175 DEPTSALDPISTGKIEELIINLK-ESYTIIIVTH 207 (254)
T ss_pred eCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeC
Confidence 55557799998899999999995 4766666653
No 488
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.16 E-value=2e+02 Score=22.31 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=25.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|......+.+.+.++.+ |.-||+||.
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh 203 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTH 203 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 3444567999888889898988854 776666664
No 489
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.12 E-value=2.1e+02 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=25.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEcc
Q psy11676 41 TREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 41 t~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSS 75 (131)
.++...++|...-..+.+.+.++.+ +.-||+||.
T Consensus 171 lDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH 204 (251)
T PRK14270 171 MDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTH 204 (251)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEc
Confidence 3554567999888889999998876 566666664
No 490
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=20.11 E-value=1.3e+02 Score=24.62 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
..+.+.+..|+++|+.+.|||++..
T Consensus 147 pGv~elL~~L~~~g~~l~IvTn~~~ 171 (286)
T PLN02779 147 PGVLRLMDEALAAGIKVAVCSTSNE 171 (286)
T ss_pred hhHHHHHHHHHHCCCeEEEEeCCCH
Confidence 4566778889999999999999853
No 491
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=20.11 E-value=1.1e+02 Score=24.40 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCeEEEEcc
Q psy11676 55 SIVEQVAECHLEGRECIMVTS 75 (131)
Q Consensus 55 ~l~~qIa~L~~~G~eVILVSS 75 (131)
.-.+.|.+|+++|+.|+++|.
T Consensus 21 ~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 21 EAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred CHHHHHHHHHHCCCeEEEEeC
Confidence 346888999999999999994
No 492
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.10 E-value=99 Score=22.69 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHHHhh
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVAFGK 82 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVaaG~ 82 (131)
+.|.+.+.++.+ +.++||+| |.++.|.
T Consensus 54 ~~i~~~l~~~~~-~~DliItt-GG~g~g~ 80 (144)
T TIGR00177 54 EEIREILRKAVD-EADVVLTT-GGTGVGP 80 (144)
T ss_pred HHHHHHHHHHHh-CCCEEEEC-CCCCCCC
Confidence 456666666654 68888887 5566664
No 493
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=20.08 E-value=2.6e+02 Score=21.14 Aligned_cols=38 Identities=21% Similarity=0.045 Sum_probs=26.9
Q ss_pred ccccCCCCCCcHHHHHHHHH-HHHHHHhCCCeEEEEccc
Q psy11676 39 VITREDEHGLALGRLASIVE-QVAECHLEGRECIMVTSG 76 (131)
Q Consensus 39 ~Lt~~~~~~l~~~~l~~l~~-qIa~L~~~G~eVILVSSG 76 (131)
+|.++...++|...-..+.. .+..+.+.|.-++++|-=
T Consensus 112 lllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 112 VLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 44566667789877677764 466777778888877763
No 494
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.06 E-value=1.6e+02 Score=19.62 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
+.+.+-+..|.+.|++++.+|+.-+.
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~~ 78 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDELA 78 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHHH
Confidence 34555566778899999999987653
No 495
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.02 E-value=2.2e+02 Score=22.15 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=25.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCeEEEEccc
Q psy11676 42 REDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76 (131)
Q Consensus 42 ~~~~~~l~~~~l~~l~~qIa~L~~~G~eVILVSSG 76 (131)
++...++|......+.+-+.++. +|.-||+||.=
T Consensus 172 DEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~ 205 (251)
T PRK14249 172 DEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHN 205 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 55556799888888888888884 57777777753
No 496
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=20.02 E-value=1.2e+02 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEccchHH
Q psy11676 54 ASIVEQVAECHLEGRECIMVTSGAVA 79 (131)
Q Consensus 54 ~~l~~qIa~L~~~G~eVILVSSGAVa 79 (131)
..-.+.|.+|++.|+.++++|+-...
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~ 43 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRA 43 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 34678889999999999999876544
No 497
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=20.01 E-value=1.2e+02 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEccch
Q psy11676 52 RLASIVEQVAECHLEGRECIMVTSGA 77 (131)
Q Consensus 52 ~l~~l~~qIa~L~~~G~eVILVSSGA 77 (131)
.+..|++ .|.++|++|.+++++.
T Consensus 24 ~~~~l~~---~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 24 VVAALTE---GLVARGHEVTLFASGD 46 (335)
T ss_pred HHHHHHH---HHHhcCceEEEEecCC
Confidence 3445554 4557899999999764
No 498
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=20.00 E-value=1.1e+02 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccchH
Q psy11676 53 LASIVEQVAECHLEGRECIMVTSGAV 78 (131)
Q Consensus 53 l~~l~~qIa~L~~~G~eVILVSSGAV 78 (131)
++.+++.+.+..+ |..|++++||=-
T Consensus 53 ~~~~~~~i~~~~~-g~~vv~l~~GDP 77 (204)
T TIGR02467 53 LDELLEFIAATRK-EKRVVVLASGDP 77 (204)
T ss_pred HHHHHHHHHHhcC-CCCEEEEecCCC
Confidence 3456666666555 999999999854
Done!