RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11676
(131 letters)
>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K)
domain of the bifunctional delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed of
an N-terminal G5K (ProB) and a C-terminal glutamyl 5-
phosphate reductase (G5PR, ProA), the first and second
enzyme catalyzing proline (and, in mammals, ornithine)
biosynthesis. G5K transfers the terminal phosphoryl
group of ATP to the gamma-carboxyl group of glutamate,
and is subject to feedback allosteric inhibition by
proline or ornithine. In plants, proline plays an
important role as an osmoprotectant and, in mammals,
ornithine biosynthesis is crucial for proper ammonia
detoxification, since a G5K mutation has been shown to
cause human hyperammonaemia.
Length = 284
Score = 151 bits (384), Expect = 9e-47
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81
R +LK+A+R+VVKLGSAV+TREDE GLALGRLASIVEQV+E +GRE I+VTSGAVAFG
Sbjct: 2 RSELKHAKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFG 61
Query: 82 KQKLAQELLMSLSMRETLSPKDHSR 106
KQ+L E+L+S SMR+TL
Sbjct: 62 KQRLRHEILLSSSMRQTLKSGQLKD 86
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 94.2 bits (234), Expect = 1e-23
Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81
R LK +R+VVK+G+AV+TR D LALGRL SI EQ++E + +GRE I+VTSGAVAFG
Sbjct: 1 RAFLKDVKRIVVKVGTAVVTRGDGR-LALGRLGSICEQLSELNSDGREVILVTSGAVAFG 59
Query: 82 KQKLAQELLMSLSMRETLSPK 102
+Q+L +L++ S + P+
Sbjct: 60 RQRLRHRILVNSSFADLQKPQ 80
>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K)
catalyzes glutamate-dependent ATP cleavage; G5K
transfers the terminal phosphoryl group of ATP to the
gamma-carboxyl group of glutamate, in the first and
controlling step of proline (and, in mammals,
ornithine) biosynthesis. G5K is subject to feedback
allosteric inhibition by proline or ornithine. In
microorganisms and plants, proline plays an important
role as an osmoprotectant and, in mammals, ornithine
biosynthesis is crucial for proper ammonia
detoxification, since a G5K mutation has been shown to
cause human hyperammonaemia. Microbial G5K generally
consists of two domains: a catalytic G5K domain and one
PUA (pseudo uridine synthases and archaeosine-specific
transglycosylases) domain, and some lack the PUA
domain. G5K requires free Mg for activity, it is
tetrameric, and it aggregates to higher forms in a
proline-dependent way. G5K lacking the PUA domain
remains tetrameric, active, and proline-inhibitable,
but the Mg requirement and the proline-triggered
aggregation are greatly diminished and abolished,
respectively, and more proline is needed for
inhibition. Although plant and animal G5Ks are part of
a bifunctional polypeptide, delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed
of an N-terminal G5K (ProB) and a C-terminal glutamyl
5- phosphate reductase (G5PR; ProA); bacterial and
yeast G5Ks are monofunctional single-polypeptide
enzymes. In this CD, all three domain architectures are
present: G5K, G5K+PUA, and G5K+G5PR.
Length = 251
Score = 84.0 bits (209), Expect = 7e-21
Identities = 35/59 (59%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQE 88
R+VVK+GS+++T ED GL LGRLAS+VEQ+AE +G+E I+V+SGAVA G+Q+L E
Sbjct: 1 RIVVKVGSSLLTDEDG-GLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLE 58
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 85.2 bits (211), Expect = 2e-20
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81
R L+ +R+V+K+G+AV+TR+D LALGRL ++ EQ+ E + +G E I+V+SGAV G
Sbjct: 9 RAFLRDVKRVVIKVGTAVVTRDDGR-LALGRLGALCEQIKELNSDGYEVILVSSGAVGVG 67
Query: 82 KQKLAQELLMSLSMRETLSPKDH 104
+Q+L L++ S + P+
Sbjct: 68 RQRLRYRRLVNSSFADLQKPQME 90
>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
Length = 372
Score = 78.2 bits (194), Expect = 3e-18
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 22 RGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81
R L ARR+VVK+GS+++T GL R+A + Q+A G E ++V+SGAVA G
Sbjct: 2 RQALSDARRIVVKVGSSLLTGGGG-GLDRARIAELARQIAALRAAGHEVVLVSSGAVAAG 60
Query: 82 KQKL 85
+++L
Sbjct: 61 RERL 64
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
Length = 266
Score = 72.2 bits (178), Expect = 3e-16
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 20 SDRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVA 79
R QL+ A+R+V+K+GS+ ++ E + L R+ +V +++ +G+E I+V+SGA+
Sbjct: 1 MMRRQLENAKRIVIKVGSSTLSYE-NGKINLERIEQLVFVISDLMNKGKEVILVSSGAIG 59
Query: 80 FGKQKLAQE 88
G KL +
Sbjct: 60 AGLTKLKLD 68
>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and
metabolism].
Length = 369
Score = 66.5 bits (163), Expect = 6e-14
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 24 QLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83
+L ARR+VVK+GS+ +T GL +L +V QVA H G E ++V+SGA+A G+
Sbjct: 2 KLSSARRIVVKIGSSSLTDGT-GGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRT 60
Query: 84 KL 85
+L
Sbjct: 61 RL 62
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit
the full length of this model, but the ProB-like domain
of delta 1-pyrroline-5-carboxylate synthetase does not
hit the C-terminal 100 residues of this model. The
noise cutoff is set low enough to hit delta
1-pyrroline-5-carboxylate synthetase and other partial
matches to this family [Amino acid biosynthesis,
Glutamate family].
Length = 363
Score = 62.3 bits (152), Expect = 2e-12
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85
+R+VVK+GS+ +T L +A +VEQVA H G E ++V+SGA+A G + L
Sbjct: 1 QRIVVKVGSSSLTG-SSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEAL 56
>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
Length = 368
Score = 53.5 bits (129), Expect = 2e-09
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85
+R+VVK+GS+++T G + L +V+Q+ +G + ++V+SGAVA G KL
Sbjct: 6 KRIVVKVGSSLLT-PHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKL 61
>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family. This family
includes kinases that phosphorylate a variety of amino
acid substrates, as well as uridylate kinase and
carbamate kinase. This family includes: Aspartokinase
EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8,
Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase
EC:2.7.4.-, Carbamate kinase EC:2.7.2.2.
Length = 230
Score = 38.6 bits (90), Expect = 3e-04
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQE 88
+R+V+KLG + +T +DE + + E++A+ G + ++V+ G K A
Sbjct: 1 KRIVIKLGGSSLTDKDE-------IKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYG 53
Query: 89 LL 90
+
Sbjct: 54 IE 55
>gnl|CDD|240438 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional.
Length = 264
Score = 37.7 bits (87), Expect = 7e-04
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 25 LKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGR-ECIMVTSGAVAFGKQ 83
LK +R+VVK+GS+++ E +A R+ ++ +A+ L+ + E I+VTSGAVA G
Sbjct: 5 LKSVKRIVVKVGSSILVDNQE--IAAHRIEALCRFIAD--LQTKYEVILVTSGAVAAGYT 60
Query: 84 K 84
K
Sbjct: 61 K 61
>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic
domain; present in such enzymes like N-acetylglutamate
kinase (NAGK), carbamate kinase (CK), aspartokinase
(AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK).
The AAK superfamily includes kinases that phosphorylate
a variety of amino acid substrates. These kinases
catalyze the formation of phosphoric anhydrides,
generally with a carboxylate, and use ATP as the source
of the phosphoryl group; are involved in amino acid
biosynthesis. Some of these kinases control the process
via allosteric feed-back inhibition.
Length = 248
Score = 37.0 bits (86), Expect = 0.001
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 32 VVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLM 91
V+K G + ++ E+ RL ++ + + EG ++V + LA L+
Sbjct: 1 VIKFGGSSVSSEE-------RLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL 53
Query: 92 SLSMRETLSP 101
+ ++
Sbjct: 54 GYARGLRITD 63
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a
fosfomycin biosynthetic gene product, FomA, and similar
proteins found in a wide range of organisms. Together,
the fomA and fomB genes in the fosfomycin biosynthetic
gene cluster of Streptomyces wedmorensis confer
high-level fosfomycin resistance. FomA and FomB
proteins converted fosfomycin to fosfomycin
monophosphate and fosfomycin diphosphate in the
presence of ATP and a magnesium ion, indicating that
FomA and FomB catalyzed phosphorylations of fosfomycin
and fosfomycin monophosphate, respectively. FomA and
related sequences in this CD are members of the Amino
Acid Kinase Superfamily (AAK).
Length = 252
Score = 32.6 bits (75), Expect = 0.032
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 30 RLVVKLGSAVITREDEHGLA-LGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81
+++KLG +VIT +D L I ++AE E +++ G +FG
Sbjct: 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSFG 50
>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and
metabolism].
Length = 238
Score = 32.6 bits (75), Expect = 0.035
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 23 GQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRE-CIMVTSGAVAFG 81
+ KY R+++KL + E G+ L I ++ E G E ++V G +A G
Sbjct: 1 AKPKY-MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARG 59
Query: 82 KQKLA 86
A
Sbjct: 60 YIGAA 64
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 32.0 bits (74), Expect = 0.054
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76
+R+++KL + E G+ L I E++ E G E +V G
Sbjct: 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG 48
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 30.1 bits (68), Expect = 0.25
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGREC-IMVTSGAVAFGKQ---- 83
+R+++KL ++ E E G R+ +V ++ G + I++ +G + G +
Sbjct: 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKEL 60
Query: 84 --KLAQELLMSLSMRETLSPKDHSRSNHFDSENPKTNIYTHII 124
A ++ M ++ L KD F+ K I + I+
Sbjct: 61 SPTRADQIGMLGTVINALYLKD-----IFEKSGLKAVIVSQIV 98
>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like,
the microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis. Regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinases of E.
coli (Ec) and Pyrococcus furiosus (Pf) are known to
function as homohexamers, with GTP and UTP being
allosteric effectors. Like other related enzymes
(carbamate kinase, aspartokinase, and N-acetylglutamate
kinase) the E. coli and most bacterial UMPKs have a
conserved, N-terminal, lysine residue proposed to
function in the catalysis of the phosphoryl group
transfer, whereas most archaeal UMPKs appear to lack
this residue and the Pyrococcus furiosus structure has
an additional Mg ion bound to the ATP molecule which is
proposed to function as the catalysis instead. Also
included in this CD are the alpha and beta subunits of
the Mo storage protein (MosA and MosB) characterized as
an alpha4-beta4 octamer containing an ATP-dependent,
polynuclear molybdenum-oxide cluster. These and related
sequences in this CD are members of the Amino Acid
Kinase Superfamily (AAK).
Length = 229
Score = 29.4 bits (67), Expect = 0.37
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSG 76
R+V+KL + E G+ L I ++ E G E +V G
Sbjct: 1 RIVLKLSGEALAGEGG-GIDPEVLKEIAREIKEVVDLGVEVAIVVGG 46
>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function
prediction only].
Length = 252
Score = 29.6 bits (67), Expect = 0.37
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 32 VVKLGSAVITREDEHG-LALGRLASIVEQVAECHLEGRECIMVTSGAVAFG 81
++KLG +VIT +D+ + RL I +++ E ++V G +FG
Sbjct: 4 ILKLGGSVITDKDKPRTVREDRLRRIAREISN---GKPEKLIVVHGGGSFG 51
>gnl|CDD|235793 PRK06394, rpl13p, 50S ribosomal protein L13P; Reviewed.
Length = 146
Score = 27.5 bits (62), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 44 DEHGLALGRLASIVEQVAECHLEGRECIMV 73
D G LGRLAS V + LEG E ++V
Sbjct: 8 DAEGQILGRLASYVAKRL---LEGEEVVIV 34
>gnl|CDD|233253 TIGR01057, topA_arch, DNA topoisomerase I, archaeal. This model
describes topoisomerase I from archaea. These enzymes
are involved in the control of DNA topology. DNA
topoisomerase I belongs to the type I topoisomerases,
which are ATP-independent [DNA metabolism, DNA
replication, recombination, and repair].
Length = 618
Score = 27.5 bits (61), Expect = 2.3
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 28 ARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTS 75
A++ + K+ R D+ G+ LG+ VE V +C G + + +
Sbjct: 557 AKKRLRKILEEFKKRLDDIGIELGKSLGSVEVVGKCPKCGGKLVSKYA 604
>gnl|CDD|233497 TIGR01624, LRP1_Cterm, LRP1 C-terminal domain. This model
represents a tightly conserved small domain found in
LRP1 and related plant proteins. This family also
contains a well-conserved putative zinc finger domain
(TIGR01623). The rest of the sequence of most members
consists of highly divergent, low-complexity sequence.
Length = 50
Score = 24.8 bits (54), Expect = 4.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 5 IRSLQTAERRRVTSFSDRGQLKYARRLVVKLGSAV 39
+ + + RVT+ D Q +YA + V +G V
Sbjct: 6 VSAPAVFKCVRVTAIDDGEQAEYAYQATVTIGGHV 40
>gnl|CDD|238915 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like.
Fructoselysine is a fructoseamine formed by glycation, a
non-enzymatic reaction of glucose with a primary amine
followed by an Amadori rearrangement, resulting in a
protein that is modified at the amino terminus and at
the lysine side chains. Fructoseamines are typically
metabolized by fructoseamine-3-kinase, especially in
higher eukaryotes. In E. coli, fructoselysine kinase has
been shown in vitro to catalyze the phosphorylation of
fructoselysine. It is proposed that fructoselysine is
released from glycated proteins during human digestion
and is partly metabolized by bacteria in the hind gut
using a protein such as fructoselysine kinase. This
family is found only in bacterial sequences, and its
oligomeric state is currently unknown.
Length = 264
Score = 26.5 bits (59), Expect = 4.6
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 2 NQAIRSLQTAERRRVTSFSDRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVA 61
+A+++L A FSDR Y + + + A + D +
Sbjct: 128 EKALQALVGAGALISFDFSDRWDDDYLQLVCPYVDFAFFSASDLSDEEVKAKL------K 181
Query: 62 ECHLEGRECIMVTSGA 77
E G + ++VT G
Sbjct: 182 EAVSRGAKLVIVTRGE 197
>gnl|CDD|238988 cd02030, NDUO42, NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is
a family of proteins that are highly similar to
deoxyribonucleoside kinases (dNK). Members of this
family have been identified as one of the subunits of
NADH:Ubiquinone oxioreductase (complex I), a
multi-protein complex located in the inner mitochondrial
membrane. The main function of the complex is to
transport electrons from NADH to ubiquinone, which is
accompanied by the translocation of protons from the
mitochondrial matrix to the inter membrane space.
Length = 219
Score = 26.2 bits (58), Expect = 6.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 71 IMVTSGAVAFGKQKLAQELLMSLSMRETLSPKDH 104
++ G +A GK KLA+EL L M+ H
Sbjct: 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIH 34
>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic.
This model represents ribosomal protein of L13 from the
Archaea and from the eukaryotic cytosol. Bacterial and
organellar forms are represented by model TIGR01066
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 142
Score = 25.5 bits (56), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 44 DEHGLALGRLASIVEQVAECHLEGRECIMV 73
D G LGRLAS+ VA+ L G + ++V
Sbjct: 4 DGSGHILGRLASV---VAKQLLNGEKVVVV 30
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 26.0 bits (58), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 18 SFSDRGQLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQV 60
F+D LK A+R ++ +G + R D + L A + E+V
Sbjct: 429 EFADV--LKAAKRPMIIVGQGALARADGAAV-LALAAKLAEKV 468
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.359
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,387,579
Number of extensions: 554507
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 35
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)