RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11676
(131 letters)
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter
jejuni [TaxId: 197]}
Length = 250
Score = 55.5 bits (132), Expect = 8e-11
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQK 84
+R+VVK+GS VI+ +E+ L+ RL ++V +A+ E E I+VTS A++ G K
Sbjct: 1 KRIVVKVGSHVIS--EENTLSFERLKNLVAFLAKLM-EKYEVILVTSAAISAGHTK 53
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 313
Score = 54.9 bits (131), Expect = 2e-10
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 29 RRLVVKLGSAVITREDEHGLA---LGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKL 85
+R+V+ LG + + + G + + Q+AE G E ++ G L
Sbjct: 2 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 61
Query: 86 AQEL 89
+
Sbjct: 62 HMDA 65
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 52.3 bits (124), Expect = 1e-09
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 29 RRLVVKLGSAVITREDEHGLA-LGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQ 87
+++VV LG I D A L + +G I+ G L Q
Sbjct: 2 KKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQ 61
Query: 88 ELLMS 92
+ S
Sbjct: 62 QAADS 66
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus
pyogenes [TaxId: 1314]}
Length = 238
Score = 50.4 bits (119), Expect = 4e-09
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 26 KYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83
KY +R+++KL + E G+ + + +I +++AE H+ G + +V G + +
Sbjct: 3 KY-QRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGE 59
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus
influenzae [TaxId: 727]}
Length = 236
Score = 50.0 bits (118), Expect = 6e-09
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 24 QLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83
Q Y +R+++KL + ED G+ L + ++ E G E +V G F
Sbjct: 2 QPIY-KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGA 60
Query: 84 KLAQELLMSLSMRETLSPKDHSRSNHFDSENPKTNIYTHIILMFVDSQ 131
KLA+ + + + ++ ++ F +
Sbjct: 61 KLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG 108
>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria
meningitidis [TaxId: 487]}
Length = 236
Score = 48.9 bits (115), Expect = 1e-08
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 24 QLKYARRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGK 82
Q+KY +R+++KL + D G+ + V ++AE G + +V G F
Sbjct: 1 QIKY-KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRG 58
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 42.6 bits (99), Expect = 2e-06
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQEL 89
++V+ LG +V++ E E ++ + + + + ++V G +A K A+EL
Sbjct: 2 KVVLSLGGSVLSNESE------KIREFAKTIESVAQQNQVFVVVGGGKLAREYIKSAREL 55
Query: 90 LMSLSMRETLSPKDHSRSNHFDSE 113
S + + + +
Sbjct: 56 GASETFCDYIGIAATRLNAMLLIS 79
>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus
furiosus [TaxId: 2261]}
Length = 225
Score = 39.6 bits (91), Expect = 3e-05
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 30 RLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQEL 89
R+V +G +V+ E+ + + I Q+ + + ++V G +A ++A++
Sbjct: 2 RIVFDIGGSVLVPENPD---IDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKF 58
Query: 90 LMSLSMR 96
S + +
Sbjct: 59 NSSETFK 65
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia
coli [TaxId: 562]}
Length = 258
Score = 38.2 bits (87), Expect = 8e-05
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQE 88
L++KLG ++ E+ L + + + +++ G + +
Sbjct: 3 NPLIIKLGGVLLDSEE-------ALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGL 55
Query: 89 LLMS 92
L
Sbjct: 56 NLPV 59
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 35.6 bits (81), Expect = 7e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83
+ +VVK G +T + + +A G ++V G
Sbjct: 26 KVVVVKYGGNAMTDDT-------LRRAFAADMAFLRNCGIHPVVVHGGGPQITAM 73
>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase
{Thermotoga maritima [TaxId: 2336]}
Length = 282
Score = 33.2 bits (75), Expect = 0.005
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83
+ V+K G + + +E+ + ++ + G + I+V G A +
Sbjct: 22 KTFVIKFGGSAMKQEN-------AKKAFIQDIILLKYTGIKPIIVHGGGPAISQM 69
>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 300
Score = 30.1 bits (67), Expect = 0.067
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 29 RRLVVKLGSAVITREDEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQ 83
+ LV+K G + E+ A V G ++V G G
Sbjct: 27 KTLVIKYGGNAMESEE-------LKAGFARDVVLMKAVGINPVVVHGGGPQIGDL 74
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 28.3 bits (63), Expect = 0.18
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 44 DEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLMSLSMR 96
D +GR+AS VAE L+G +V + ++ +
Sbjct: 10 DARDCIMGRVASQ---VAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVD 59
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 24.8 bits (53), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 52 RLASIVEQVAECH-LEGRECIMVTSGA 77
R A ++ + A +GR ++VTSG
Sbjct: 1 RWAEVMARFAARLGAQGRRVVLVTSGG 27
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 24.5 bits (53), Expect = 4.0
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 56 IVEQVAECHLEGRECIMVTS 75
+ E VA+ ++ G+ ++ T
Sbjct: 23 VAEDVAQRYMTGQPVLVGTV 42
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 23.8 bits (51), Expect = 5.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 44 DEHGLALGRLASIVEQVAECHLEGRECIMVTSGAVAF 80
+ GL LGRLAS V ++ LEG E ++V +
Sbjct: 5 NADGLILGRLASRVAKML---LEGEEVVIVNAEKAVI 38
>d1k46a_ d.195.1.1 (A:) YopH tyrosine phosphatase N-terminal
domain {Yersinia pseudotuberculosis [TaxId: 633]}
Length = 124
Score = 23.8 bits (51), Expect = 6.6
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 47 GLALGRLASIVEQVAECHLEGRECIMVTSGAVAFGKQKLAQELLMSLSMRET 98
L+L L V ++ + E +C G VA K+ Q L ++ RE+
Sbjct: 1 NLSLSDLHRQVSRLVQ--QESGDCTGKLRGNVAANKETTFQGLTIASGARES 50
>d1h9ra2 b.40.6.2 (A:200-261) C-terminal domain of
molybdate-dependent transcriptional regulator ModE
{Escherichia coli [TaxId: 562]}
Length = 62
Score = 22.3 bits (48), Expect = 9.4
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 37 SAVITREDEHGLALGRLA 54
A + + L G+
Sbjct: 31 CATVPVNEATSLQQGQNV 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.359
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 421,972
Number of extensions: 16400
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 21
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)