BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11677
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V+TREE+ DL ++K IDLIIPRGSS LVR IQ+ ++ IPV GH+EGICH YVD +A +
Sbjct: 204 VNTREEVEDLCRLDKXIDLIIPRGSSQLVRDIQKAAKGIPVXGHSEGICHXYVDSEASVD 263
Query: 315 KAIKIAR 321
K ++ R
Sbjct: 264 KVTRLVR 270
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAXXXXXXXXXX 430
RSG R L L PE RA+ I++LADLL ++ ++L AN KDL +A + +A
Sbjct: 39 RSGGRXLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA-EGRLAAPLLKRLSLS 97
Query: 431 XXXXXXXXXXXXQIAESSHTNVGKFVK 457
QIA SS +VG+ ++
Sbjct: 98 TSKLNSLAIGLRQIAASSQDSVGRVLR 124
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 320 ARSGSRVLQGLNPEDRAKAIYNLAD 344
ARSG R L L PE RA+ I++LAD
Sbjct: 38 ARSGGRXLATLEPEQRAEIIHHLAD 62
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
+ TR+++SDLL +++IDL++PRGS+ LVR I+ ++ IPVLGHA+GIC +Y+D+DAD+
Sbjct: 195 IETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTK-IPVLGHADGICSIYLDEDADLI 253
Query: 315 KAIKIA 320
KA +I+
Sbjct: 254 KAKRIS 259
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYT----KAPWEEGAKMIWTYTSEMRDTVQ 84
I + DND+L+A+ A AD L+L++D G+YT P E K ++ +R +
Sbjct: 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALR-AIA 202
Query: 85 FGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQS 144
S +GTGGM +K+ +A A G+ +I G + I ++ G +GT F AQ+
Sbjct: 203 GDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLF---HAQA 259
Query: 145 GGTPVE 150
TP+E
Sbjct: 260 --TPLE 263
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYT----KAPWEEGAKMIWTYTSEMRDTVQ 84
I + DND+L+A+ A AD L+L++D G+YT P E K ++ +R +
Sbjct: 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALR-AIA 202
Query: 85 FGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S +GTGGM +K+ +A A G+ +I G + I ++ G +GT F
Sbjct: 203 GDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLF 255
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 254 QVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADI 313
+ + R + L++M +++D+I+PRG L+ + +++ +P++ H +GICHVYVD A +
Sbjct: 203 ETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEAR-VPMIKHLDGICHVYVDDRASV 261
Query: 314 RKAIKI 319
KA+ +
Sbjct: 262 TKALTV 267
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMI--WTYTSE--MRDTV 83
I DNDSL+A ADLL+++SD++G Y K P E AK + T+ E ++ T+
Sbjct: 137 IVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATI 196
Query: 84 QFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQ 143
+ G S+ GTGG+ +K+ +A + L+ + +G K + K Q
Sbjct: 197 KTG--SEHGTGGIVTKLKAAKFLLEHNKKXFLASGFDLSVAKTFLLEDK----------Q 244
Query: 144 SGGTPVE 150
GGT E
Sbjct: 245 IGGTLFE 251
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 256 STREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRK 315
+ R + + + + +++ L+IPRG L+ S + + +PVL G CH++VD+ AD++K
Sbjct: 193 TDRSLVLEXIRLREYLSLVIPRGGYGLI-SFVRDNATVPVLETGVGNCHIFVDESADLKK 251
Query: 316 AIKI 319
A+ +
Sbjct: 252 AVPV 255
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGV 419
R VL+ ++ KAI +A+ L ++ ++L+AN D+ A + GV
Sbjct: 24 REAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGV 72
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS-EMRDTVQFGQKSKVGT 93
D+ AA +A + A+ LIL++DV+G+ K+I T T E + ++ G T
Sbjct: 182 DTAAAEIAKSLMAEKLILLTDVDGVLKD------GKLISTLTPDEAEELIRDGTV----T 231
Query: 94 GGMDSKVNSATWALDRGVSVV--ICNGMQKEAIKQIVAGRKIGTFFTD 139
GGM KV A A+ GV V I G++ + +I + + IGT +
Sbjct: 232 GGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 35 DSLAAMLAAEIQAD-LLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ AAEI+AD +L + V+G+Y P ++ + + D + G+ K G
Sbjct: 144 DTTAALRAAEIEADAILXAKNGVDGVYNADPKKDANAVKF-------DELTHGEVIKRGL 196
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSG 145
D+ ++T + D + +V+ N + I+++V G IGT ++ G
Sbjct: 197 KIXDA--TASTLSXDNDIDLVVFNXNEAGNIQRVVFGEHIGTTVSNKVCDEG 246
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D++AA+LA ++ADLL+++++V+G+YT P
Sbjct: 120 TDAVAALLAEFLKADLLVVITNVDGVYTADP 150
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D++AA+LA ++ADLL+++++V+G+YT P
Sbjct: 121 TDAVAALLAEFLKADLLVVITNVDGVYTADP 151
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D++AA+LA ++ADLL+++++V+G+YT P
Sbjct: 122 TDAVAALLAEFLKADLLVVITNVDGVYTADP 152
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D++AA+LA ++ADLL+++++V+G+YT P
Sbjct: 139 TDAVAALLAEFLKADLLVVITNVDGVYTADP 169
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA A EI AD++++ V+G++ + P + T S R+ + G +
Sbjct: 185 TDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSH-REVLDRGLRV---- 239
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
+ + + +D G+ +++ N + I + V G KIGT T
Sbjct: 240 ----ADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280
>pdb|2E9Y|A Chain A, Crystal Structure Of Project Ape1968 From Aeropyrum Pernix
K1
pdb|2E9Y|B Chain B, Crystal Structure Of Project Ape1968 From Aeropyrum Pernix
K1
Length = 316
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 24 IFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTV 83
+ + + ++ D D +++LA ++ ADLL++++DV G+ EG + W + +
Sbjct: 206 VLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAVNY-GREGER--WLRRAAASELK 262
Query: 84 QFGQKSKVGTGGMDSKVNSATWALDR 109
++ ++ G M KV +A ++R
Sbjct: 263 KYLREGHFPPGSMGPKVEAAISFVER 288
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP--WEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D+ A + A EI +DL+I + V+GIY K P +++ K+ DT+ +
Sbjct: 145 DTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKL---------DTLSYNDALIGD 195
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTF 136
MD + + A D + +V+CN +K + Q++ ++ G F
Sbjct: 196 IEVMDD--TAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQ-GVF 236
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIW---TYTSEMRDTVQFGQKSKV 91
DS A + EI+A++++ + V+G++T P ++ ++ TY+ + ++
Sbjct: 146 DSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKV------ 199
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139
MD + + T A D + + + N + A++++V G K GT T+
Sbjct: 200 ----MD--LAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE 241
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIW---TYTSEMRDTVQFGQKSKV 91
DS A + EI+A++++ + V+G++T P ++ ++ TY+ + ++
Sbjct: 146 DSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKV------ 199
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139
MD + + T A D + + + N + A++++V G K GT T+
Sbjct: 200 ----MD--LAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE 241
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIW---TYTSEMRDTVQFGQKSKV 91
DS A + EI+A++++ + V+G++T P ++ + TY+ + ++
Sbjct: 146 DSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATXYEQLTYSEVLEKELKV------ 199
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139
+ + T A D + + + N + A++++V G K GT T+
Sbjct: 200 ------XDLAAFTLARDHKLPIRVFNXNKPGALRRVVXGEKEGTLITE 241
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 112 SVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKMEILVN---SAT 168
S G++ EA + A + G F D + T E L + L+ E+ V + T
Sbjct: 147 SAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFT 206
Query: 169 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 203
A D + + + N + A++++V G K GT T+
Sbjct: 207 LARDHKLPIRVFNXNKPGALRRVVXGEKEGTLITE 241
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
I D + A +A ++ D+ + ++DV+GIY+K P ++ ++ + F +
Sbjct: 144 IYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL---RDIDTNITFDRVQN 200
Query: 91 VGTGGMDSKVNSAT---WALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
TGG+ K S ++ GV ++ NG E I I IGT
Sbjct: 201 DVTGGIGKKFESMVKMKSSVKNGVYLI--NGNHPERIGDIGKESFIGT 246
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS--EMRDTVQFGQKSKVG 92
DS A + EI+AD+++ + V+G+Y P + ++ S E+ D ++ KV
Sbjct: 145 DSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVID-----KELKV- 198
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD +++ T A D G+ + + N + A++Q+V G + GT
Sbjct: 199 ---MD--LSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGT 236
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
DS AA+ A EI ADLL+ + V+G+Y K P
Sbjct: 145 TDSGAALRAIEIGADLLLKATKVDGVYDKDP 175
>pdb|3LL5|A Chain A, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|B Chain B, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|C Chain C, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|D Chain D, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
Length = 249
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
I D + A A ++ D+ + ++DV+GIY+K P ++ ++ + F +
Sbjct: 144 IYSGDDIXADXAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL---RDIDTNITFDRVQN 200
Query: 91 VGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAIKQIVAGRKIGT 135
TGG+ K S + V + NG E I I IGT
Sbjct: 201 DVTGGIGKKFESXVKXKSSVKNGVYLINGNHPERIGDIGKESFIGT 246
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase
pdb|3LL9|B Chain B, X-Ray Structures Of Isopentenyl Phosphate Kinase
Length = 269
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQF-GQK 88
S+ D L + + + +IL +DV+G+YT+ P + + + D G
Sbjct: 156 SVISGDQLINHFSLRLXPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTL 215
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKI-GTFFT 138
+ TGG K+ ++GV I N I++ + G ++ GT T
Sbjct: 216 NTDVTGGXVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 30 SIKDNDSLAAMLAAEIQADLLILMSDVNG--IYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
++ D D LA E+ AD+ ++++DVNG +Y E+ W ++ + ++ +
Sbjct: 211 AVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQ-----WLREVKVEELRKYYE 265
Query: 88 KSKVGTGGMDSKVNSA----TWALDRGV 111
+ G M KV +A W +R +
Sbjct: 266 EGHFKAGSMGPKVLAAIRFIEWGGERAI 293
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D+ AA+LA I+AD+ I ++V+G+Y+ P
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADP 146
>pdb|1O9J|A Chain A, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|B Chain B, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|C Chain C, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|D Chain D, The X-Ray Crystal Structure Of Eta-Crystallin
Length = 501
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 293 IPVLGHA--EGICHVYVDKDADIRKAIKIARSGSRV---LQGLNPEDRAKAIYNLADQGE 347
PV A E IC V D+ KA+K AR ++ + ++ +R + IY LAD E
Sbjct: 38 FPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIE 97
Query: 348 MD 349
D
Sbjct: 98 RD 99
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ AA+ AE D+ + ++V+G+YT P ++ + + +T+ F +
Sbjct: 144 DTAAALRGAEXNCDVXLKATNVDGVYTADPKKDPSATRY-------ETITFDEALL---- 192
Query: 95 GMDSKVNSAT-WAL--DRGVSVVICNGMQKEAIKQIVAGRKIGTF 136
+ KV AT +AL +R +++V+ ++ ++K+++ G GT
Sbjct: 193 -KNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTL 236
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 344 DQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQGLNPEDRA-------KAIYNLADLL 396
D E + PC+ I L + + R+ RV+ +D+A K +Y + D
Sbjct: 285 DDDETPIFLSPCMRALIHLAGVSLGQRRATRRVMGATKEKDKAPTKATTTKLVYQIFDTF 344
Query: 397 ISKQADLLDANSKD 410
S+Q + D K+
Sbjct: 345 FSEQIEKYDKEDKE 358
>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1AG8|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria
pdb|1A4Z|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|B Chain B, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|C Chain C, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
pdb|1A4Z|D Chain D, Aldehyde Dehydrogenase From Bovine Mitochondria Complex
With Nad (Reduced) And Samarium (Iii)
Length = 499
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRV---LQGLNPEDRAKAIYNLADQGEMDVSGLPCL 356
ICHV AD+ +A+K AR+ ++ + ++ +R + + LAD E D + L L
Sbjct: 47 ICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAAL 104
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 209 GGTPVEVLAEIWKNETLNTTVPKKHAKTSQCKYFTKMLPRYPLHSQVSTREE 260
GG V +A W ET + +YF P + LH VSTR E
Sbjct: 296 GGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIE 347
>pdb|3URM|A Chain A, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
pdb|3URM|B Chain B, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
pdb|3UUG|A Chain A, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
pdb|3UUG|B Chain B, Crystal Structure Of The Periplasmic Sugar Binding Protein
Chve
Length = 330
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 16/136 (11%)
Query: 133 IGTFFTDASAQSGGTPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIV 192
+ ++TDA + +P + L+ + + L D+ + VV + ++K I+
Sbjct: 196 LSAYYTDAKVDAVLSPYDGLSIGI---ISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSII 252
Query: 193 AGRKIGTFFTDASAQSGGTPVEVLAEIWKNETLNTTVPKKHAKTSQCKYF---TKMLPRY 249
AG + T F D LA++ N +N + K + + K + K++P Y
Sbjct: 253 AGEQYSTIFKDTRE---------LAKVTVN-MVNAVMEGKEPEVNDTKTYENGVKVVPSY 302
Query: 250 PLHSQVSTREEISDLL 265
L T+E +L
Sbjct: 303 LLKPVAVTKENYKQVL 318
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 214 EVLAEIWKNETLNTTVPKKHAKTSQCKYFTKMLPRYPLHSQVSTREEISDLLSMEKH 270
E L E+ K E+ T+PK + C YF K L YP + + T+EE + + +H
Sbjct: 292 EKLREVVK-ESDAFTLPK--YPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRH 345
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 214 EVLAEIWKNETLNTTVPKKHAKTSQCKYFTKMLPRYPLHSQVSTREEISDLLSMEKH 270
E L E+ K E+ T+PK + C YF K L YP + + T+EE + + +H
Sbjct: 292 EKLREVVK-ESDAFTLPK--YPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRH 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,999,928
Number of Sequences: 62578
Number of extensions: 472617
Number of successful extensions: 1258
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 54
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)