Query psy11677
Match_columns 462
No_of_seqs 428 out of 3053
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 16:02:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0014 ProA Gamma-glutamyl ph 100.0 9.1E-57 2E-61 456.0 14.5 254 148-414 4-355 (417)
2 KOG4165|consensus 100.0 4.4E-49 9.5E-54 389.1 12.8 249 149-410 2-345 (433)
3 TIGR01092 P5CS delta l-pyrroli 100.0 8.7E-40 1.9E-44 362.5 25.0 304 31-349 166-549 (715)
4 PLN02418 delta-1-pyrroline-5-c 100.0 4.5E-38 9.8E-43 348.6 24.9 309 30-350 173-558 (718)
5 COG0263 ProB Glutamate 5-kinas 100.0 8.4E-32 1.8E-36 271.0 8.9 185 8-223 114-314 (369)
6 PRK13402 gamma-glutamyl kinase 99.9 1.8E-27 3.8E-32 245.8 8.9 178 14-223 118-311 (368)
7 TIGR01027 proB glutamate 5-kin 99.9 7.7E-26 1.7E-30 233.6 9.7 165 27-223 138-307 (363)
8 PRK05429 gamma-glutamyl kinase 99.9 3E-25 6.4E-30 229.9 9.7 155 28-183 147-306 (372)
9 cd04256 AAK_P5CS_ProBA AAK_P5C 99.9 8.9E-23 1.9E-27 204.4 12.5 110 29-138 175-284 (284)
10 KOG1154|consensus 99.9 1.1E-22 2.3E-27 194.8 10.3 133 10-142 127-278 (285)
11 PTZ00489 glutamate 5-kinase; P 99.9 2.4E-22 5.2E-27 199.4 13.1 131 10-141 114-261 (264)
12 PRK12314 gamma-glutamyl kinase 99.9 2.7E-22 5.8E-27 199.3 12.6 132 9-140 118-265 (266)
13 TIGR02518 EutH_ACDH acetaldehy 99.9 6.7E-22 1.5E-26 211.5 13.8 210 149-374 10-282 (488)
14 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 1.1E-21 2.3E-26 193.0 12.7 110 29-138 139-251 (251)
15 COG0014 ProA Gamma-glutamyl ph 99.8 3E-21 6.6E-26 197.2 11.5 95 364-459 6-100 (417)
16 cd04241 AAK_FomA-like AAK_FomA 99.8 2.4E-20 5.2E-25 183.0 11.8 127 9-137 112-252 (252)
17 KOG4165|consensus 99.8 1.9E-18 4E-23 172.2 10.1 95 365-460 4-98 (433)
18 TIGR02076 pyrH_arch uridylate 99.7 6.9E-18 1.5E-22 162.8 11.1 105 32-138 115-221 (221)
19 PRK14556 pyrH uridylate kinase 99.7 6.2E-18 1.3E-22 166.1 10.8 124 6-139 118-248 (249)
20 PRK00358 pyrH uridylate kinase 99.7 8.3E-18 1.8E-22 163.2 11.3 115 14-138 110-231 (231)
21 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.7 1.5E-17 3.3E-22 160.6 12.9 106 31-138 114-221 (221)
22 PRK14558 pyrH uridylate kinase 99.7 1.5E-17 3.3E-22 161.6 11.8 117 14-140 108-231 (231)
23 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.7 1.6E-17 3.4E-22 165.9 12.0 119 14-137 148-279 (279)
24 PRK14058 acetylglutamate/acety 99.7 1.7E-17 3.7E-22 164.9 11.6 120 11-139 136-267 (268)
25 PRK00942 acetylglutamate kinas 99.7 3E-17 6.5E-22 164.1 11.8 119 14-140 152-283 (283)
26 CHL00202 argB acetylglutamate 99.7 3.9E-17 8.4E-22 163.8 12.1 122 12-138 149-283 (284)
27 PRK12353 putative amino acid k 99.7 2.9E-17 6.3E-22 166.9 11.1 102 31-139 211-314 (314)
28 cd04239 AAK_UMPK-like AAK_UMPK 99.7 4.1E-17 8.9E-22 158.3 11.6 115 14-138 108-229 (229)
29 cd02115 AAK Amino Acid Kinases 99.7 1.7E-17 3.8E-22 161.0 8.8 121 9-137 113-248 (248)
30 TIGR00746 arcC carbamate kinas 99.7 6.1E-17 1.3E-21 164.1 12.6 101 31-138 208-309 (310)
31 cd04238 AAK_NAGK-like AAK_NAGK 99.7 7.4E-17 1.6E-21 158.9 11.6 122 8-137 122-256 (256)
32 COG1608 Predicted archaeal kin 99.7 7.6E-17 1.6E-21 155.8 10.9 122 14-138 117-251 (252)
33 PRK14557 pyrH uridylate kinase 99.7 1E-16 2.3E-21 157.8 11.7 126 7-142 108-241 (247)
34 cd04255 AAK_UMPK-MosAB AAK_UMP 99.7 5.9E-17 1.3E-21 160.8 8.8 104 29-138 158-262 (262)
35 PLN02512 acetylglutamate kinas 99.7 2.2E-16 4.8E-21 160.1 12.4 121 14-139 176-309 (309)
36 COG0528 PyrH Uridylate kinase 99.7 1.8E-16 4E-21 153.1 10.6 123 7-139 108-238 (238)
37 PRK12686 carbamate kinase; Rev 99.7 1.8E-16 3.9E-21 160.4 10.9 101 31-138 209-311 (312)
38 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.7 3.4E-16 7.3E-21 154.0 11.8 116 13-137 125-252 (252)
39 TIGR02075 pyrH_bact uridylate 99.7 3.5E-16 7.5E-21 152.5 11.5 117 12-138 109-233 (233)
40 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.6 8.9E-16 1.9E-20 149.4 11.9 115 14-138 110-231 (231)
41 cd04235 AAK_CK AAK_CK: Carbama 99.6 1.1E-15 2.4E-20 154.5 10.6 101 31-138 207-308 (308)
42 PRK12454 carbamate kinase-like 99.6 2.1E-15 4.5E-20 152.6 10.8 102 31-139 211-313 (313)
43 COG0548 ArgB Acetylglutamate k 99.6 2.7E-15 5.9E-20 148.3 11.1 104 30-139 160-265 (265)
44 PRK12354 carbamate kinase; Rev 99.6 2.8E-15 6.2E-20 151.2 10.7 101 31-142 202-303 (307)
45 PRK13805 bifunctional acetalde 99.6 9E-15 1.9E-19 166.5 14.2 160 209-394 105-293 (862)
46 PRK05279 N-acetylglutamate syn 99.6 7.4E-15 1.6E-19 155.4 11.6 124 13-141 157-293 (441)
47 cd04246 AAK_AK-DapG-like AAK_A 99.6 5.6E-15 1.2E-19 144.2 9.6 91 31-138 148-239 (239)
48 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.6 7.6E-15 1.6E-19 145.2 10.6 111 14-137 135-257 (257)
49 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.6 1.1E-14 2.5E-19 145.8 11.3 117 14-137 151-280 (280)
50 TIGR00407 proA gamma-glutamyl 99.6 1.4E-14 3E-19 151.7 12.2 193 155-359 12-268 (398)
51 cd04261 AAK_AKii-LysC-BS AAK_A 99.6 9.4E-15 2E-19 142.7 9.5 91 31-138 148-239 (239)
52 PRK12352 putative carbamate ki 99.6 1.4E-14 3.1E-19 147.2 11.0 101 32-139 214-315 (316)
53 cd04234 AAK_AK AAK_AK: Amino A 99.5 1.6E-14 3.4E-19 140.3 9.5 114 9-138 97-227 (227)
54 PF00696 AA_kinase: Amino acid 99.5 3.3E-14 7.2E-19 137.6 10.1 103 13-117 123-242 (242)
55 PRK09411 carbamate kinase; Rev 99.5 3.7E-14 8.1E-19 142.3 10.4 98 30-138 198-296 (297)
56 TIGR01890 N-Ac-Glu-synth amino 99.5 2.9E-13 6.4E-18 142.9 12.0 118 14-141 150-281 (429)
57 TIGR00761 argB acetylglutamate 99.5 2.4E-13 5.1E-18 132.1 9.6 95 14-115 125-231 (231)
58 cd04252 AAK_NAGK-fArgBP AAK_NA 99.4 4.3E-13 9.3E-18 132.1 11.4 114 13-137 119-248 (248)
59 cd04259 AAK_AK-DapDC AAK_AK-Da 99.4 2.2E-13 4.9E-18 137.4 8.9 92 31-138 203-295 (295)
60 cd04260 AAK_AKi-DapG-BS AAK_AK 99.4 3.4E-13 7.3E-18 132.4 9.4 91 31-138 153-244 (244)
61 PRK05925 aspartate kinase; Pro 99.4 2.6E-13 5.6E-18 143.8 9.2 96 30-141 186-282 (440)
62 cd07079 ALDH_F18-19_ProA-GPR G 99.4 1.4E-12 3.1E-17 136.9 12.9 187 163-358 26-273 (406)
63 cd04236 AAK_NAGS-Urea AAK_NAGS 99.4 1.2E-12 2.7E-17 130.5 9.8 99 28-137 168-271 (271)
64 cd04244 AAK_AK-LysC-like AAK_A 99.4 9.2E-13 2E-17 133.2 8.8 92 31-138 206-298 (298)
65 PRK08841 aspartate kinase; Val 99.4 1E-12 2.2E-17 137.5 9.4 92 31-139 150-242 (392)
66 PRK00197 proA gamma-glutamyl p 99.4 2.8E-12 6.2E-17 135.1 12.9 180 166-357 35-278 (417)
67 cd04243 AAK_AK-HSDH-like AAK_A 99.4 1.6E-12 3.5E-17 131.2 9.5 91 32-138 202-293 (293)
68 TIGR02078 AspKin_pair Pyrococc 99.4 4E-12 8.6E-17 130.0 12.4 92 32-141 179-272 (327)
69 cd04240 AAK_UC AAK_UC: Unchara 99.4 2.8E-12 6.1E-17 122.9 9.9 90 31-137 113-203 (203)
70 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.3 3.4E-12 7.4E-17 128.8 9.7 91 32-138 203-294 (294)
71 PRK15398 aldehyde dehydrogenas 99.3 4.9E-12 1.1E-16 135.1 11.3 138 210-356 127-292 (465)
72 PRK07431 aspartate kinase; Pro 99.3 3.6E-12 7.8E-17 139.6 10.4 95 31-142 152-247 (587)
73 PRK06635 aspartate kinase; Rev 99.3 3.5E-12 7.6E-17 133.4 9.8 94 30-140 149-243 (404)
74 cd04258 AAK_AKiii-LysC-EC AAK_ 99.3 8.5E-12 1.8E-16 125.9 11.9 92 31-138 200-292 (292)
75 cd07121 ALDH_EutE Ethanolamine 99.3 9.4E-12 2E-16 131.7 12.8 162 210-396 95-284 (429)
76 TIGR00656 asp_kin_monofn aspar 99.3 3.6E-12 7.8E-17 133.2 9.4 92 32-140 152-244 (401)
77 cd07077 ALDH-like NAD(P)+-depe 99.3 1.1E-11 2.5E-16 129.5 12.4 190 160-360 19-266 (397)
78 PRK06291 aspartate kinase; Pro 99.3 3.9E-12 8.5E-17 135.8 9.0 95 30-140 209-304 (465)
79 cd04245 AAK_AKiii-YclM-BS AAK_ 99.3 5.8E-12 1.3E-16 126.8 9.6 91 32-138 197-288 (288)
80 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.3 6.8E-12 1.5E-16 127.3 9.6 93 32-140 213-306 (306)
81 PRK04531 acetylglutamate kinas 99.3 1E-11 2.3E-16 130.1 11.0 104 31-142 147-252 (398)
82 cd07086 ALDH_F7_AASADH-like NA 99.3 4.5E-12 9.7E-17 135.6 8.2 132 209-348 130-291 (478)
83 TIGR00657 asp_kinases aspartat 99.3 7.8E-12 1.7E-16 132.5 9.2 94 32-141 191-285 (441)
84 cd07090 ALDH_F9_TMBADH NAD+-de 99.3 3.7E-12 8E-17 135.3 6.1 191 149-348 21-270 (457)
85 PRK08210 aspartate kinase I; R 99.3 1.4E-11 3E-16 129.2 9.5 93 32-141 156-249 (403)
86 cd07138 ALDH_CddD_SSP0762 Rhod 99.3 8.2E-12 1.8E-16 133.0 7.9 192 148-349 37-286 (466)
87 PRK08373 aspartate kinase; Val 99.3 1.8E-11 3.8E-16 125.9 9.9 92 32-141 189-281 (341)
88 PRK09084 aspartate kinase III; 99.2 3.8E-11 8.3E-16 127.8 12.3 93 32-140 197-290 (448)
89 TIGR01804 BADH glycine betaine 99.2 7E-12 1.5E-16 133.6 5.4 190 149-348 37-288 (467)
90 cd07141 ALDH_F1AB_F2_RALDH1 NA 99.2 6.1E-12 1.3E-16 134.7 4.6 133 209-348 142-301 (481)
91 COG0527 LysC Aspartokinases [A 99.2 2.8E-11 6.1E-16 128.5 9.5 95 32-142 197-292 (447)
92 cd07135 ALDH_F14-YMR110C Sacch 99.2 2.3E-11 5E-16 128.9 7.9 171 166-348 36-260 (436)
93 cd07131 ALDH_AldH-CAJ73105 Unc 99.2 2.3E-11 4.9E-16 130.0 7.2 133 209-348 132-290 (478)
94 PRK08961 bifunctional aspartat 99.2 3.3E-11 7.1E-16 137.5 8.5 94 31-140 212-306 (861)
95 PRK09034 aspartate kinase; Rev 99.2 6.6E-11 1.4E-15 126.1 9.7 94 32-141 197-291 (454)
96 TIGR02299 HpaE 5-carboxymethyl 99.2 2.7E-11 5.8E-16 129.9 6.5 191 149-348 40-290 (488)
97 cd07108 ALDH_MGR_2402 Magnetos 99.2 3.7E-11 8.1E-16 127.6 6.6 192 149-348 21-272 (457)
98 cd07125 ALDH_PutA-P5CDH Delta( 99.2 6.8E-11 1.5E-15 127.9 8.6 194 149-348 71-325 (518)
99 cd07088 ALDH_LactADH-AldA Esch 99.2 1.4E-10 3E-15 123.6 10.8 191 149-349 37-289 (468)
100 cd07109 ALDH_AAS00426 Uncharac 99.2 3.1E-11 6.7E-16 128.2 5.7 192 149-348 21-272 (454)
101 cd07093 ALDH_F8_HMSADH Human a 99.1 5.9E-11 1.3E-15 125.9 7.7 194 149-348 21-272 (455)
102 cd07101 ALDH_SSADH2_GabD2 Myco 99.1 5.1E-11 1.1E-15 126.6 7.2 197 149-355 20-278 (454)
103 COG0549 ArcC Carbamate kinase 99.1 1.8E-10 3.9E-15 114.2 10.0 102 31-139 210-312 (312)
104 PLN00412 NADP-dependent glycer 99.1 5.8E-11 1.3E-15 127.8 6.7 192 149-348 55-310 (496)
105 PRK09436 thrA bifunctional asp 99.1 9.8E-11 2.1E-15 132.8 8.8 93 32-140 205-298 (819)
106 cd07144 ALDH_ALD2-YMR170C Sacc 99.1 5.5E-11 1.2E-15 127.3 6.0 178 166-354 77-305 (484)
107 PLN02825 amino-acid N-acetyltr 99.1 2E-10 4.4E-15 123.7 10.2 123 13-141 158-366 (515)
108 PRK13252 betaine aldehyde dehy 99.1 5.5E-11 1.2E-15 127.5 5.8 188 149-348 46-296 (488)
109 TIGR01722 MMSDH methylmalonic 99.1 8.1E-11 1.8E-15 125.9 7.0 118 209-330 133-276 (477)
110 TIGR03216 OH_muco_semi_DH 2-hy 99.1 6.1E-11 1.3E-15 127.0 6.0 192 149-348 38-295 (481)
111 cd07085 ALDH_F6_MMSDH Methylma 99.1 9.3E-11 2E-15 125.4 7.2 190 149-345 40-287 (478)
112 cd07106 ALDH_AldA-AAD23400 Str 99.1 6.6E-11 1.4E-15 125.4 6.0 190 149-348 21-267 (446)
113 cd07114 ALDH_DhaS Uncharacteri 99.1 3.6E-11 7.9E-16 127.7 3.4 133 209-348 116-274 (457)
114 cd07130 ALDH_F7_AASADH NAD+-de 99.1 9.3E-11 2E-15 125.4 6.4 132 210-349 130-291 (474)
115 cd07143 ALDH_AldA_AN0554 Asper 99.1 9.2E-11 2E-15 125.7 6.1 174 166-349 77-301 (481)
116 cd07147 ALDH_F21_RNP123 Aldehy 99.1 1.9E-10 4.2E-15 122.0 7.5 132 209-348 120-275 (452)
117 PLN02551 aspartokinase 99.1 3.7E-10 8.1E-15 122.1 9.7 93 32-140 256-349 (521)
118 cd07091 ALDH_F1-2_Ald2-like AL 99.1 5.9E-11 1.3E-15 126.8 3.2 192 149-349 43-298 (476)
119 PTZ00381 aldehyde dehydrogenas 99.1 1.4E-10 3E-15 124.8 5.8 172 165-348 37-261 (493)
120 TIGR03240 arg_catab_astD succi 99.1 2E-10 4.4E-15 123.1 7.0 194 149-348 37-287 (484)
121 TIGR01780 SSADH succinate-semi 99.1 2.3E-10 5E-15 121.5 7.2 133 209-348 114-273 (448)
122 cd07132 ALDH_F3AB Aldehyde deh 99.0 5.8E-10 1.2E-14 118.5 9.1 174 163-348 26-252 (443)
123 cd07150 ALDH_VaniDH_like Pseud 99.0 7.5E-10 1.6E-14 117.4 9.9 190 149-348 23-274 (451)
124 cd06534 ALDH-SF NAD(P)+-depend 99.0 3.9E-10 8.5E-15 116.0 6.7 119 209-330 89-233 (367)
125 cd07111 ALDH_F16 Aldehyde dehy 99.0 7.9E-10 1.7E-14 118.6 9.2 190 149-348 61-301 (480)
126 cd07098 ALDH_F15-22 Aldehyde d 99.0 7.6E-10 1.7E-14 117.9 9.0 132 210-347 118-277 (465)
127 cd07092 ALDH_ABALDH-YdcW Esche 99.0 7.1E-10 1.5E-14 117.5 8.1 189 149-347 21-271 (450)
128 cd07099 ALDH_DDALDH Methylomon 99.0 5E-10 1.1E-14 118.8 6.7 131 209-348 116-272 (453)
129 PRK09466 metL bifunctional asp 99.0 1E-09 2.3E-14 124.2 9.5 92 32-139 208-300 (810)
130 cd07148 ALDH_RL0313 Uncharacte 99.0 4E-10 8.8E-15 119.9 5.6 128 209-348 121-277 (455)
131 TIGR01238 D1pyr5carbox3 delta- 99.0 3.9E-10 8.4E-15 121.6 5.3 192 149-348 76-318 (500)
132 cd07115 ALDH_HMSADH_HapE Pseud 99.0 5.2E-10 1.1E-14 118.8 6.1 194 149-348 21-272 (453)
133 cd07110 ALDH_F10_BADH Arabidop 99.0 1.8E-09 3.9E-14 114.8 10.0 133 209-348 117-275 (456)
134 PRK09407 gabD2 succinic semial 99.0 6.5E-10 1.4E-14 120.5 6.7 190 149-348 56-307 (524)
135 cd07142 ALDH_F2BC Arabidosis a 99.0 7.1E-10 1.5E-14 118.7 6.7 174 166-348 74-297 (476)
136 cd07078 ALDH NAD(P)+ dependent 98.9 7.4E-10 1.6E-14 116.3 5.9 163 166-330 29-237 (432)
137 cd07122 ALDH_F20_ACDH Coenzyme 98.9 2.2E-09 4.7E-14 114.1 8.5 142 209-363 92-262 (436)
138 cd07119 ALDH_BADH-GbsA Bacillu 98.9 6.1E-10 1.3E-14 119.2 4.0 132 209-348 131-289 (482)
139 cd07140 ALDH_F1L_FTFDH 10-form 98.9 7.8E-10 1.7E-14 118.9 4.7 133 209-348 144-303 (486)
140 cd07103 ALDH_F5_SSADH_GabD Mit 98.9 1.6E-09 3.4E-14 114.9 6.8 120 209-330 114-258 (451)
141 cd07104 ALDH_BenzADH-like ALDH 98.9 2.7E-09 5.9E-14 112.3 8.6 133 209-347 95-253 (431)
142 cd07137 ALDH_F3FHI Plant aldeh 98.9 1.4E-09 3.1E-14 115.2 6.4 130 209-348 98-254 (432)
143 cd07081 ALDH_F20_ACDH_EutE-lik 98.9 5.6E-09 1.2E-13 111.0 10.9 140 209-363 92-262 (439)
144 PLN02466 aldehyde dehydrogenas 98.9 1.4E-09 2.9E-14 118.4 5.8 178 166-349 128-352 (538)
145 cd07151 ALDH_HBenzADH NADP+-de 98.9 1.9E-09 4.1E-14 115.0 6.5 190 149-348 34-286 (465)
146 cd04248 AAK_AK-Ectoine AAK_AK- 98.9 5.3E-09 1.1E-13 105.8 9.0 90 32-138 212-304 (304)
147 cd07149 ALDH_y4uC Uncharacteri 98.9 1.1E-08 2.4E-13 108.4 11.9 120 209-330 120-262 (453)
148 cd07094 ALDH_F21_LactADH-like 98.9 8.6E-09 1.9E-13 109.5 10.8 118 210-330 121-262 (453)
149 PRK09181 aspartate kinase; Val 98.9 5.1E-09 1.1E-13 112.3 9.1 92 32-140 218-312 (475)
150 COG2054 Uncharacterized archae 98.9 6E-09 1.3E-13 97.4 7.9 95 32-140 116-211 (212)
151 PF00171 Aldedh: Aldehyde dehy 98.9 6.2E-10 1.4E-14 118.5 1.5 178 148-330 30-267 (462)
152 cd07105 ALDH_SaliADH Salicylal 98.9 2.5E-09 5.5E-14 113.0 5.8 173 166-348 31-256 (432)
153 cd07102 ALDH_EDX86601 Uncharac 98.8 3.7E-09 8E-14 112.2 6.1 118 209-330 113-256 (452)
154 cd07118 ALDH_SNDH Gluconobacte 98.8 3.7E-09 7.9E-14 112.6 5.8 133 209-348 116-274 (454)
155 PLN02315 aldehyde dehydrogenas 98.8 6.1E-09 1.3E-13 112.6 7.5 133 209-348 151-312 (508)
156 cd07152 ALDH_BenzADH NAD-depen 98.8 9.2E-09 2E-13 109.0 8.4 188 149-346 15-263 (443)
157 cd07133 ALDH_CALDH_CalB Conife 98.8 3.9E-09 8.5E-14 111.8 5.3 132 209-348 98-253 (434)
158 cd07082 ALDH_F11_NP-GAPDH NADP 98.8 8.2E-09 1.8E-13 110.3 7.6 161 166-330 70-280 (473)
159 PRK09406 gabD1 succinic semial 98.8 1.1E-08 2.4E-13 109.1 7.9 131 210-348 121-277 (457)
160 cd07097 ALDH_KGSADH-YcbD Bacil 98.8 6.6E-09 1.4E-13 111.1 5.7 133 209-348 132-290 (473)
161 cd07107 ALDH_PhdK-like Nocardi 98.8 1.5E-08 3.3E-13 107.8 8.2 115 209-325 113-251 (456)
162 PRK13473 gamma-aminobutyraldeh 98.7 9.4E-09 2E-13 110.0 6.0 134 209-348 135-292 (475)
163 cd07087 ALDH_F3-13-14_CALDH-li 98.7 1.1E-08 2.4E-13 108.0 5.3 132 209-348 97-252 (426)
164 cd07145 ALDH_LactADH_F420-Bios 98.7 3E-08 6.6E-13 105.5 8.5 120 209-330 120-264 (456)
165 cd07124 ALDH_PutA-P5CDH-RocA D 98.7 2.9E-08 6.4E-13 107.3 8.4 134 209-348 163-327 (512)
166 cd07083 ALDH_P5CDH ALDH subfam 98.7 3.5E-08 7.7E-13 106.4 8.6 133 210-348 152-315 (500)
167 cd07139 ALDH_AldA-Rv0768 Mycob 98.7 9.2E-09 2E-13 109.8 3.6 132 209-348 134-291 (471)
168 cd07120 ALDH_PsfA-ACA09737 Pse 98.7 9.2E-09 2E-13 109.7 3.0 132 209-347 114-272 (455)
169 TIGR03250 PhnAcAld_DH putative 98.7 2.2E-08 4.9E-13 107.2 5.7 132 209-348 135-292 (472)
170 PRK10090 aldehyde dehydrogenas 98.6 1.4E-08 3.1E-13 106.9 3.4 135 209-349 68-227 (409)
171 PRK09847 gamma-glutamyl-gamma- 98.6 1.8E-08 3.9E-13 108.6 3.8 134 209-349 154-315 (494)
172 PRK09457 astD succinylglutamic 98.6 7.2E-08 1.6E-12 103.7 8.2 133 209-348 131-289 (487)
173 cd07136 ALDH_YwdH-P39616 Bacil 98.6 4.3E-08 9.2E-13 104.6 6.3 133 209-349 97-253 (449)
174 PRK03137 1-pyrroline-5-carboxy 98.6 7.7E-08 1.7E-12 104.2 8.3 134 209-348 168-332 (514)
175 PLN02278 succinic semialdehyde 98.6 8.6E-08 1.9E-12 103.4 8.0 134 209-348 157-315 (498)
176 PLN02203 aldehyde dehydrogenas 98.6 7.7E-08 1.7E-12 103.6 7.4 177 165-350 36-266 (484)
177 PRK13968 putative succinate se 98.6 6.1E-08 1.3E-12 103.6 6.6 132 210-348 124-280 (462)
178 TIGR01237 D1pyr5carbox2 delta- 98.6 1E-07 2.3E-12 103.1 7.1 120 209-330 164-314 (511)
179 PLN02467 betaine aldehyde dehy 98.5 7E-08 1.5E-12 104.3 5.4 134 209-348 148-306 (503)
180 cd07100 ALDH_SSADH1_GabD1 Myco 98.5 2.1E-07 4.6E-12 98.4 7.9 117 210-330 94-236 (429)
181 cd07113 ALDH_PADH_NahF Escheri 98.5 9.4E-08 2E-12 102.4 5.2 131 209-348 139-296 (477)
182 cd07129 ALDH_KGSADH Alpha-Keto 98.5 3.7E-07 8.1E-12 97.4 9.6 119 209-330 102-257 (454)
183 cd07134 ALDH_AlkH-like Pseudom 98.5 3E-07 6.6E-12 97.5 8.6 132 209-348 97-252 (433)
184 cd07084 ALDH_KGSADH-like ALDH 98.5 2E-07 4.3E-12 99.2 6.8 132 209-347 97-253 (442)
185 cd07095 ALDH_SGSD_AstD N-succi 98.5 2.9E-07 6.3E-12 97.6 7.3 131 209-346 94-250 (431)
186 cd07089 ALDH_CddD-AldA-like Rh 98.4 2.6E-07 5.5E-12 98.7 6.6 134 209-348 120-278 (459)
187 cd07559 ALDH_ACDHII_AcoD-like 98.4 1.4E-07 3.1E-12 101.2 4.6 132 209-347 133-294 (480)
188 cd07146 ALDH_PhpJ Streptomyces 98.4 1.9E-07 4.1E-12 99.5 5.4 119 209-330 117-259 (451)
189 cd07117 ALDH_StaphAldA1 Unchar 98.4 3.8E-07 8.2E-12 97.9 6.4 134 209-348 133-290 (475)
190 cd07116 ALDH_ACDHII-AcoD Ralst 98.4 2.8E-07 6.1E-12 98.8 5.4 132 209-349 133-296 (479)
191 cd07127 ALDH_PAD-PaaZ Phenylac 98.4 1.8E-06 3.8E-11 94.4 11.6 120 209-330 190-337 (549)
192 PRK11809 putA trifunctional tr 98.4 5.5E-07 1.2E-11 106.3 7.0 183 166-356 713-937 (1318)
193 PRK11905 bifunctional proline 98.3 9.2E-07 2E-11 104.2 8.5 192 149-349 592-835 (1208)
194 TIGR02288 PaaN_2 phenylacetic 98.3 2.7E-06 5.9E-11 93.0 10.8 146 210-366 191-375 (551)
195 TIGR01092 P5CS delta l-pyrroli 98.3 2.9E-06 6.3E-11 95.5 10.6 95 362-457 287-381 (715)
196 PLN02174 aldehyde dehydrogenas 98.2 2E-06 4.3E-11 92.8 7.3 136 209-352 109-269 (484)
197 cd07112 ALDH_GABALDH-PuuC Esch 98.2 1.2E-06 2.6E-11 93.6 5.4 134 209-348 121-281 (462)
198 KOG0456|consensus 98.2 1.4E-06 3E-11 89.8 4.0 95 32-142 283-378 (559)
199 PLN02418 delta-1-pyrroline-5-c 98.2 9.6E-06 2.1E-10 91.4 10.8 94 363-457 296-389 (718)
200 TIGR00407 proA gamma-glutamyl 98.1 9.6E-06 2.1E-10 85.5 10.1 86 370-456 1-86 (398)
201 PRK11904 bifunctional proline 98.1 5E-06 1.1E-10 96.8 8.6 135 210-350 682-844 (1038)
202 cd07123 ALDH_F4-17_P5CDH Delta 98.1 6.5E-06 1.4E-10 89.5 6.8 134 209-348 166-330 (522)
203 PLN02766 coniferyl-aldehyde de 97.9 2.6E-05 5.6E-10 84.5 8.0 120 209-330 155-300 (501)
204 PRK11241 gabD succinate-semial 97.9 1.4E-05 3.1E-10 86.1 5.6 134 209-348 143-301 (482)
205 PRK00197 proA gamma-glutamyl p 97.8 0.00014 3E-09 77.1 11.4 92 364-456 7-98 (417)
206 cd07079 ALDH_F18-19_ProA-GPR G 97.7 0.00023 4.9E-09 75.2 11.4 90 366-456 3-92 (406)
207 TIGR03374 ABALDH 1-pyrroline d 97.7 0.00013 2.8E-09 78.5 9.7 120 209-330 134-277 (472)
208 PLN02419 methylmalonate-semial 97.5 0.00025 5.5E-09 78.5 8.9 119 209-330 246-389 (604)
209 COG1012 PutA NAD-dependent ald 97.4 0.0003 6.6E-09 75.8 7.6 181 209-399 130-338 (472)
210 KOG2456|consensus 97.3 0.002 4.3E-08 67.4 10.7 162 165-330 32-242 (477)
211 TIGR01236 D1pyr5carbox1 delta- 97.2 0.0014 3.1E-08 71.7 9.3 120 209-330 166-316 (533)
212 cd07077 ALDH-like NAD(P)+-depe 96.6 0.0089 1.9E-07 62.8 9.4 79 369-448 2-80 (397)
213 cd07126 ALDH_F12_P5CDH Delta(1 96.5 0.0035 7.6E-08 68.0 5.9 131 209-347 139-293 (489)
214 TIGR02518 EutH_ACDH acetaldehy 96.4 0.006 1.3E-07 66.1 6.5 74 363-444 10-87 (488)
215 cd07080 ALDH_Acyl-CoA-Red_LuxC 95.7 0.17 3.6E-06 54.0 13.5 117 209-330 109-258 (422)
216 cd07135 ALDH_F14-YMR110C Sacch 95.0 0.066 1.4E-06 57.2 7.7 80 365-448 9-88 (436)
217 TIGR02278 PaaN-DH phenylacetic 95.0 0.034 7.3E-07 62.6 5.6 118 209-330 140-290 (663)
218 cd07128 ALDH_MaoC-N N-terminal 94.7 0.047 1E-06 59.7 5.7 131 209-348 140-304 (513)
219 cd07132 ALDH_F3AB Aldehyde deh 94.3 0.061 1.3E-06 57.5 5.2 78 365-446 2-79 (443)
220 PRK11903 aldehyde dehydrogenas 93.8 0.088 1.9E-06 57.7 5.4 91 250-347 207-307 (521)
221 cd07129 ALDH_KGSADH Alpha-Keto 91.7 0.75 1.6E-05 49.4 8.9 72 366-443 4-76 (454)
222 PTZ00381 aldehyde dehydrogenas 91.4 0.4 8.6E-06 52.2 6.5 78 365-446 11-88 (493)
223 cd07137 ALDH_F3FHI Plant aldeh 91.3 0.32 6.9E-06 51.9 5.6 74 366-443 4-77 (432)
224 TIGR03216 OH_muco_semi_DH 2-hy 91.1 0.66 1.4E-05 50.1 7.8 74 365-444 40-116 (481)
225 PRK11563 bifunctional aldehyde 91.1 0.39 8.5E-06 54.2 6.2 131 210-348 145-308 (675)
226 KOG2436|consensus 90.6 0.16 3.4E-06 54.8 2.4 109 26-140 249-360 (520)
227 cd07133 ALDH_CALDH_CalB Conife 90.3 0.45 9.8E-06 50.8 5.6 48 365-412 2-49 (434)
228 PLN02203 aldehyde dehydrogenas 89.8 0.53 1.2E-05 51.1 5.7 77 365-445 10-86 (484)
229 cd07143 ALDH_AldA_AN0554 Asper 89.8 0.85 1.9E-05 49.4 7.3 72 366-448 49-122 (481)
230 cd07090 ALDH_F9_TMBADH NAD+-de 89.5 0.81 1.8E-05 49.0 6.8 47 365-411 23-69 (457)
231 cd07093 ALDH_F8_HMSADH Human a 89.4 0.87 1.9E-05 48.6 6.9 47 365-411 23-69 (455)
232 cd07086 ALDH_F7_AASADH-like NA 89.3 1.1 2.4E-05 48.4 7.6 42 365-406 39-80 (478)
233 cd07138 ALDH_CddD_SSP0762 Rhod 89.1 1.2 2.7E-05 47.7 7.9 75 365-445 40-116 (466)
234 TIGR02299 HpaE 5-carboxymethyl 88.4 0.95 2.1E-05 48.9 6.4 47 365-411 42-88 (488)
235 cd07152 ALDH_BenzADH NAD-depen 88.2 1.1 2.3E-05 47.9 6.6 49 364-412 16-64 (443)
236 cd07108 ALDH_MGR_2402 Magnetos 87.9 0.99 2.2E-05 48.3 6.1 50 364-413 22-71 (457)
237 cd07098 ALDH_F15-22 Aldehyde d 87.7 1.2 2.6E-05 47.7 6.6 75 365-443 22-96 (465)
238 cd07121 ALDH_EutE Ethanolamine 87.5 1.2 2.5E-05 47.8 6.3 64 365-432 8-71 (429)
239 cd07101 ALDH_SSADH2_GabD2 Myco 87.2 1.2 2.7E-05 47.5 6.3 48 365-412 22-69 (454)
240 PRK13252 betaine aldehyde dehy 86.5 1.4 3.1E-05 47.6 6.4 48 365-412 48-95 (488)
241 cd07106 ALDH_AldA-AAD23400 Str 86.5 2.7 5.8E-05 44.9 8.4 72 365-448 23-94 (446)
242 PLN00412 NADP-dependent glycer 86.3 1.5 3.1E-05 47.8 6.3 50 364-413 56-105 (496)
243 cd07102 ALDH_EDX86601 Uncharac 86.1 3 6.5E-05 44.5 8.5 74 365-444 22-96 (452)
244 cd07105 ALDH_SaliADH Salicylal 86.0 1.7 3.7E-05 46.2 6.6 47 365-411 4-50 (432)
245 cd07116 ALDH_ACDHII-AcoD Ralst 85.9 1.9 4E-05 46.6 6.9 75 365-443 42-116 (479)
246 KOG2450|consensus 85.8 2.9 6.3E-05 45.5 8.1 181 209-399 155-365 (501)
247 cd07087 ALDH_F3-13-14_CALDH-li 85.3 1.3 2.9E-05 47.0 5.4 76 365-444 2-77 (426)
248 TIGR01804 BADH glycine betaine 85.1 1.9 4.1E-05 46.3 6.5 47 365-411 39-85 (467)
249 cd07559 ALDH_ACDHII_AcoD-like 84.9 2.2 4.8E-05 46.2 6.9 74 366-443 43-116 (480)
250 cd07134 ALDH_AlkH-like Pseudom 84.8 1.7 3.7E-05 46.4 5.9 48 366-413 3-50 (433)
251 PRK09407 gabD2 succinic semial 84.6 1.9 4.1E-05 47.3 6.2 48 365-412 58-105 (524)
252 cd07125 ALDH_PutA-P5CDH Delta( 83.9 2.2 4.9E-05 46.6 6.5 46 366-411 74-119 (518)
253 cd07131 ALDH_AldH-CAJ73105 Unc 83.5 3.3 7.2E-05 44.6 7.5 42 365-406 41-82 (478)
254 cd07151 ALDH_HBenzADH NADP+-de 83.5 2.4 5.3E-05 45.5 6.4 47 365-411 36-82 (465)
255 cd07099 ALDH_DDALDH Methylomon 83.4 2.4 5.3E-05 45.2 6.4 47 365-411 22-68 (453)
256 cd07115 ALDH_HMSADH_HapE Pseud 83.3 3.2 6.8E-05 44.4 7.2 47 365-411 23-69 (453)
257 cd07092 ALDH_ABALDH-YdcW Esche 83.3 2.5 5.5E-05 45.0 6.4 48 364-411 22-69 (450)
258 cd07110 ALDH_F10_BADH Arabidop 82.8 2.7 5.9E-05 45.0 6.4 47 365-411 23-69 (456)
259 cd07085 ALDH_F6_MMSDH Methylma 82.6 3.6 7.8E-05 44.4 7.3 42 365-406 42-83 (478)
260 cd07109 ALDH_AAS00426 Uncharac 82.2 2.8 6.1E-05 44.8 6.3 47 365-411 23-70 (454)
261 TIGR03240 arg_catab_astD succi 81.9 2.9 6.4E-05 45.2 6.4 47 364-410 38-84 (484)
262 PF00171 Aldedh: Aldehyde dehy 81.8 3.5 7.7E-05 44.2 6.9 47 365-411 33-79 (462)
263 PRK15398 aldehyde dehydrogenas 81.4 3.3 7.2E-05 44.8 6.5 46 365-410 40-85 (465)
264 cd07150 ALDH_VaniDH_like Pseud 81.3 3.3 7.2E-05 44.1 6.4 77 364-445 24-100 (451)
265 cd07104 ALDH_BenzADH-like ALDH 80.5 3.7 8.1E-05 43.4 6.4 48 365-412 4-51 (431)
266 cd07082 ALDH_F11_NP-GAPDH NADP 80.4 3.4 7.3E-05 44.5 6.2 76 364-444 41-117 (473)
267 cd07078 ALDH NAD(P)+ dependent 80.4 3.8 8.2E-05 43.2 6.4 47 366-412 3-49 (432)
268 cd07114 ALDH_DhaS Uncharacteri 79.1 4 8.7E-05 43.7 6.2 71 365-447 23-95 (457)
269 COG1778 Low specificity phosph 77.9 2.7 5.9E-05 39.3 3.8 61 51-129 10-70 (170)
270 cd07144 ALDH_ALD2-YMR170C Sacc 77.1 5 0.00011 43.4 6.3 46 365-410 49-95 (484)
271 cd07130 ALDH_F7_AASADH NAD+-de 76.5 5.5 0.00012 43.0 6.3 40 365-404 38-77 (474)
272 cd07107 ALDH_PhdK-like Nocardi 75.9 6 0.00013 42.4 6.4 47 365-411 23-69 (456)
273 cd07094 ALDH_F21_LactADH-like 75.7 7.3 0.00016 41.6 7.0 47 364-410 24-70 (453)
274 cd07103 ALDH_F5_SSADH_GabD Mit 75.6 6.1 0.00013 42.1 6.3 47 365-411 23-69 (451)
275 cd07091 ALDH_F1-2_Ald2-like AL 75.5 4.1 8.8E-05 43.9 5.0 47 365-411 45-93 (476)
276 TIGR01780 SSADH succinate-semi 75.3 5.3 0.00012 42.7 5.8 41 364-404 22-62 (448)
277 cd07147 ALDH_F21_RNP123 Aldehy 74.7 6.8 0.00015 41.8 6.4 40 365-404 25-64 (452)
278 cd07122 ALDH_F20_ACDH Coenzyme 73.4 7.7 0.00017 41.7 6.4 40 365-404 3-42 (436)
279 TIGR01722 MMSDH methylmalonic 72.8 6.9 0.00015 42.3 5.9 42 365-406 42-83 (477)
280 cd07088 ALDH_LactADH-AldA Esch 72.4 8.3 0.00018 41.4 6.4 42 365-406 39-80 (468)
281 cd07142 ALDH_F2BC Arabidosis a 71.8 5.5 0.00012 43.0 4.9 45 366-410 46-92 (476)
282 cd07139 ALDH_AldA-Rv0768 Mycob 71.3 14 0.0003 39.7 7.8 45 365-409 40-86 (471)
283 cd07081 ALDH_F20_ACDH_EutE-lik 71.0 9.4 0.0002 41.1 6.4 45 366-410 4-48 (439)
284 cd07149 ALDH_y4uC Uncharacteri 70.8 9.7 0.00021 40.5 6.5 44 365-408 25-68 (453)
285 cd06534 ALDH-SF NAD(P)+-depend 70.2 6.9 0.00015 40.3 5.1 44 369-412 2-45 (367)
286 PRK09457 astD succinylglutamic 69.9 9.7 0.00021 41.3 6.3 45 365-409 41-85 (487)
287 cd07136 ALDH_YwdH-P39616 Bacil 68.7 9.4 0.0002 41.1 5.9 46 365-410 2-47 (449)
288 cd07100 ALDH_SSADH1_GabD1 Myco 68.6 11 0.00024 40.0 6.4 46 365-410 3-48 (429)
289 PF05893 LuxC: Acyl-CoA reduct 68.4 1.1E+02 0.0023 32.6 13.6 170 209-394 84-284 (399)
290 cd07127 ALDH_PAD-PaaZ Phenylac 68.3 12 0.00025 41.7 6.5 49 363-411 86-134 (549)
291 PRK13968 putative succinate se 68.1 11 0.00025 40.5 6.4 47 365-411 33-79 (462)
292 cd07145 ALDH_LactADH_F420-Bios 68.1 12 0.00025 40.1 6.4 46 365-410 25-70 (456)
293 PLN02174 aldehyde dehydrogenas 67.9 10 0.00022 41.4 5.9 47 365-411 14-60 (484)
294 cd07111 ALDH_F16 Aldehyde dehy 67.9 11 0.00025 40.8 6.3 42 365-406 63-104 (480)
295 PRK13473 gamma-aminobutyraldeh 67.6 11 0.00024 40.6 6.1 41 365-405 43-83 (475)
296 TIGR02288 PaaN_2 phenylacetic 67.4 13 0.00027 41.4 6.6 47 364-410 87-133 (551)
297 cd07119 ALDH_BADH-GbsA Bacillu 65.5 9.3 0.0002 41.2 5.1 47 365-411 39-87 (482)
298 TIGR02726 phenyl_P_delta pheny 65.1 14 0.0003 34.6 5.5 68 51-138 9-78 (169)
299 cd07113 ALDH_PADH_NahF Escheri 64.9 14 0.0003 39.9 6.3 45 365-409 41-86 (477)
300 PRK14501 putative bifunctional 63.9 46 0.001 38.0 10.5 73 35-131 478-552 (726)
301 KOG2454|consensus 63.9 24 0.00053 37.6 7.4 119 210-330 186-332 (583)
302 cd07097 ALDH_KGSADH-YcbD Bacil 63.7 16 0.00035 39.4 6.4 46 365-410 41-86 (473)
303 cd07089 ALDH_CddD-AldA-like Rh 63.2 16 0.00035 39.2 6.3 46 365-410 23-69 (459)
304 KOG2451|consensus 63.1 50 0.0011 35.3 9.5 120 209-330 156-303 (503)
305 PRK09406 gabD1 succinic semial 62.7 18 0.00038 39.0 6.5 45 365-409 27-71 (457)
306 TIGR01237 D1pyr5carbox2 delta- 61.8 18 0.0004 39.5 6.5 44 365-408 73-116 (511)
307 cd07140 ALDH_F1L_FTFDH 10-form 61.8 11 0.00024 40.9 4.8 75 366-444 48-124 (486)
308 cd07095 ALDH_SGSD_AstD N-succi 61.6 18 0.00039 38.6 6.3 45 365-409 4-48 (431)
309 PF02601 Exonuc_VII_L: Exonucl 61.4 90 0.0019 31.7 11.1 33 382-414 193-225 (319)
310 cd07117 ALDH_StaphAldA1 Unchar 61.3 17 0.00037 39.3 6.1 42 365-406 42-83 (475)
311 PLN02466 aldehyde dehydrogenas 60.9 9.9 0.00021 42.0 4.3 49 366-414 100-154 (538)
312 cd07141 ALDH_F1AB_F2_RALDH1 NA 60.8 15 0.00032 39.7 5.6 41 366-406 49-92 (481)
313 PRK11241 gabD succinate-semial 59.0 21 0.00046 38.7 6.4 46 365-410 52-97 (482)
314 PLN02278 succinic semialdehyde 58.9 22 0.00047 38.8 6.4 47 365-411 66-112 (498)
315 cd07084 ALDH_KGSADH-like ALDH 58.3 20 0.00043 38.4 6.0 41 365-405 3-43 (442)
316 TIGR03374 ABALDH 1-pyrroline d 58.2 23 0.0005 38.3 6.5 44 366-409 43-86 (472)
317 PRK13805 bifunctional acetalde 57.0 21 0.00046 41.6 6.3 44 365-408 16-59 (862)
318 COG4230 Delta 1-pyrroline-5-ca 56.5 60 0.0013 36.4 9.0 114 210-326 234-376 (769)
319 PRK03137 1-pyrroline-5-carboxy 56.4 23 0.0005 38.8 6.1 41 365-405 77-117 (514)
320 TIGR01238 D1pyr5carbox3 delta- 56.4 25 0.00053 38.5 6.4 45 366-410 79-123 (500)
321 cd07083 ALDH_P5CDH ALDH subfam 56.0 27 0.00059 38.0 6.6 42 365-406 59-100 (500)
322 KOG2450|consensus 55.5 17 0.00038 39.7 4.9 36 369-404 66-103 (501)
323 PLN02315 aldehyde dehydrogenas 54.9 27 0.00058 38.3 6.4 45 366-410 61-105 (508)
324 cd07148 ALDH_RL0313 Uncharacte 54.1 25 0.00054 37.7 5.9 44 366-409 26-70 (455)
325 PLN02467 betaine aldehyde dehy 53.7 25 0.00054 38.5 5.9 44 367-410 51-99 (503)
326 cd07128 ALDH_MaoC-N N-terminal 51.7 26 0.00057 38.4 5.7 41 365-405 40-81 (513)
327 cd07124 ALDH_PutA-P5CDH-RocA D 51.2 35 0.00076 37.2 6.5 45 365-409 73-117 (512)
328 cd07123 ALDH_F4-17_P5CDH Delta 48.9 39 0.00084 37.1 6.4 43 367-409 75-118 (522)
329 PRK11903 aldehyde dehydrogenas 48.9 33 0.00071 37.8 5.8 41 365-405 44-85 (521)
330 cd07118 ALDH_SNDH Gluconobacte 48.7 25 0.00055 37.7 4.9 45 366-410 24-70 (454)
331 PLN02419 methylmalonate-semial 47.3 40 0.00088 37.9 6.3 41 366-406 156-196 (604)
332 TIGR01236 D1pyr5carbox1 delta- 47.2 41 0.00089 37.1 6.3 44 366-409 74-118 (533)
333 COG1012 PutA NAD-dependent ald 46.0 41 0.0009 36.6 6.0 42 369-410 44-85 (472)
334 COG0432 Uncharacterized conser 44.8 35 0.00076 31.2 4.4 50 5-55 52-106 (137)
335 PLN02766 coniferyl-aldehyde de 44.2 32 0.0007 37.5 4.9 45 367-411 64-110 (501)
336 PRK09847 gamma-glutamyl-gamma- 43.6 34 0.00073 37.3 4.9 41 366-406 62-104 (494)
337 PRK00286 xseA exodeoxyribonucl 42.4 2.4E+02 0.0052 30.1 11.1 24 271-296 193-228 (438)
338 cd07112 ALDH_GABALDH-PuuC Esch 41.8 38 0.00082 36.4 4.9 46 365-410 28-75 (462)
339 PRK11563 bifunctional aldehyde 41.8 51 0.0011 37.5 6.1 41 365-405 44-85 (675)
340 KOG2452|consensus 40.9 63 0.0014 35.3 6.2 117 209-330 560-684 (881)
341 TIGR02278 PaaN-DH phenylacetic 38.2 48 0.001 37.7 5.2 40 366-405 41-81 (663)
342 PF01751 Toprim: Toprim domain 37.7 48 0.001 27.7 4.0 42 2-57 29-70 (100)
343 TIGR01670 YrbI-phosphatas 3-de 36.1 83 0.0018 28.4 5.6 68 51-138 3-72 (154)
344 COG1570 XseA Exonuclease VII, 35.6 2.5E+02 0.0053 30.6 9.7 28 267-296 190-229 (440)
345 PF09413 DUF2007: Domain of un 35.3 74 0.0016 24.5 4.4 19 303-322 46-64 (67)
346 cd07120 ALDH_PsfA-ACA09737 Pse 34.0 51 0.0011 35.5 4.4 44 367-411 25-70 (455)
347 PRK11904 bifunctional proline 31.1 94 0.002 37.4 6.3 47 363-409 587-633 (1038)
348 PRK05265 pyridoxine 5'-phospha 30.7 3.1E+02 0.0068 27.4 8.8 88 13-127 111-201 (239)
349 PRK04523 N-acetylornithine car 29.5 35 0.00075 35.6 2.1 43 258-301 92-146 (335)
350 PF03437 BtpA: BtpA family; I 28.4 82 0.0018 31.7 4.5 44 97-142 189-235 (254)
351 TIGR03250 PhnAcAld_DH putative 27.0 1.2E+02 0.0027 32.7 5.9 30 379-408 54-83 (472)
352 PRK11905 bifunctional proline 27.0 1.2E+02 0.0027 37.0 6.3 48 362-409 591-638 (1208)
353 PLN02527 aspartate carbamoyltr 27.0 42 0.00091 34.5 2.2 44 258-302 83-128 (306)
354 PLN02423 phosphomannomutase 25.9 1.7E+02 0.0037 28.7 6.2 22 110-131 39-60 (245)
355 PLN02151 trehalose-phosphatase 25.5 2.7E+02 0.0059 29.4 7.8 66 40-129 89-154 (354)
356 PRK11809 putA trifunctional tr 25.4 1.4E+02 0.0031 36.8 6.6 48 362-409 683-730 (1318)
357 TIGR00237 xseA exodeoxyribonuc 25.3 4.5E+02 0.0098 28.3 9.7 30 385-414 305-334 (432)
358 cd07146 ALDH_PhpJ Streptomyces 24.6 74 0.0016 34.1 3.6 27 378-404 35-61 (451)
359 TIGR02329 propionate_PrpR prop 24.4 8.7E+02 0.019 26.9 11.9 169 268-452 52-238 (526)
360 TIGR00620 sporelyase spore pho 23.8 1.7E+02 0.0037 28.4 5.5 53 53-113 33-87 (199)
361 PRK00856 pyrB aspartate carbam 23.7 62 0.0013 33.2 2.7 43 258-301 87-132 (305)
362 PRK14804 ornithine carbamoyltr 23.4 60 0.0013 33.4 2.5 38 262-302 91-129 (311)
363 PRK10187 trehalose-6-phosphate 23.0 1.9E+02 0.0041 28.7 6.0 22 109-130 52-73 (266)
364 cd07406 MPP_CG11883_N Drosophi 22.9 1.2E+02 0.0025 29.9 4.4 95 210-310 127-237 (257)
365 TIGR00559 pdxJ pyridoxine 5'-p 22.5 5.6E+02 0.012 25.6 8.9 90 14-129 109-201 (237)
366 PF02548 Pantoate_transf: Keto 22.4 1.2E+02 0.0025 30.8 4.3 58 262-325 101-170 (261)
367 PLN03064 alpha,alpha-trehalose 21.8 4.9E+02 0.011 31.1 9.8 86 31-131 573-660 (934)
368 cd00003 PNPsynthase Pyridoxine 21.7 6E+02 0.013 25.4 8.9 91 13-129 108-201 (234)
369 PF14841 FliG_M: FliG middle d 21.6 1.8E+02 0.0039 23.6 4.6 31 364-394 18-50 (79)
370 PF03740 PdxJ: Pyridoxal phosp 21.6 3.4E+02 0.0074 27.1 7.3 94 13-131 109-206 (239)
371 PLN03017 trehalose-phosphatase 21.5 2.9E+02 0.0064 29.3 7.2 67 39-129 101-167 (366)
372 PF01894 UPF0047: Uncharacteri 21.4 1.9E+02 0.0041 25.7 4.9 51 5-55 34-89 (118)
373 PRK03669 mannosyl-3-phosphogly 21.2 2E+02 0.0043 28.3 5.6 28 102-129 32-59 (271)
374 PF11567 PfUIS3: Plasmodium fa 20.4 3E+02 0.0066 23.4 5.6 49 365-413 26-81 (101)
375 PLN03063 alpha,alpha-trehalose 20.1 5.6E+02 0.012 29.9 9.8 73 38-131 496-570 (797)
376 PRK12702 mannosyl-3-phosphogly 20.1 2.7E+02 0.0058 28.8 6.4 26 104-129 28-53 (302)
377 PLN02580 trehalose-phosphatase 20.0 3.9E+02 0.0084 28.6 7.8 66 41-130 111-176 (384)
No 1
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-57 Score=455.98 Aligned_cols=254 Identities=21% Similarity=0.305 Sum_probs=219.7
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhc
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGR 195 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~ 195 (462)
.++.++++||+|++.|.. ||++|+.+.+.||+||.+|+++ |++|++|+
T Consensus 4 ~~~~~~~~Ak~A~~~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~Dl~~are~gl~~~m~DRL~L~~~Ri~~ma~gl 83 (417)
T COG0014 4 ELEELGKRAKAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLSEAMLDRLALTPSRIEAMADGL 83 (417)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHcCCcHHHHHHHcCCHHHHHHHHHHH
Confidence 478899999999999888 9999999999999999999998 99999999
Q ss_pred cccccccccCCC-----------------CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHH
Q psy11677 196 KIGTFFTDASAQ-----------------SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKY 241 (462)
Q Consensus 196 ~i~t~~a~~~d~-----------------~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~ 241 (462)
+ +|+.|||| ++|||+|||||||||| ||||+| |||.||| ++
T Consensus 84 ~---~Va~L~DPvGev~~~~~~~nGL~i~~~rvPLGVigvIYEsR--PnVtvdaaaLclKsGNAvILRGGsea~~Sn-~a 157 (417)
T COG0014 84 R---QVAALPDPVGEVIDGWTLPNGLQIYRVRVPLGVIGVIYESR--PNVTVDAAALCLKSGNAVILRGGSEAIHSN-AA 157 (417)
T ss_pred H---HHhcCCCchHhhhccccCCCCCEEEEEEccceEEEEEEecC--CccHHHHHHHHHhcCCEEEEeCcHHHhhhH-HH
Confidence 9 99999997 4699999999999999 999999 9999999 99
Q ss_pred HH----hhcCCC----CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC
Q psy11677 242 FT----KMLPRY----PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA 311 (462)
Q Consensus 242 l~----~al~~~----~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a 311 (462)
|+ ++|+++ ++||+|+ +|+.+.+||++++||||||||||++||++|+++++ ||||+||.||||+|||++|
T Consensus 158 i~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~iIPRGg~~Li~~v~~~a~-vPVi~~~~G~CHiyvd~~A 236 (417)
T COG0014 158 IVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVENAT-VPVIEHGVGNCHIYVDESA 236 (417)
T ss_pred HHHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeEEEcCCcHHHHHHHHhCCc-CCEEecCcceEEEEecccC
Confidence 99 777777 8999999 59999999999999999999999999999999996 9999999999999999999
Q ss_pred CHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChhhHHHHHHh-HHHHHHHHHHHHHHHhc-----------
Q psy11677 312 DIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCLLLFIRL-GSLFISGTRSGSRVLQG----------- 379 (462)
Q Consensus 312 d~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ar~As~~L~~----------- 379 (462)
|++||++|++|||||||++ |||+|+++.+..++..|+|.|...++. |..|- .-.++...|..
T Consensus 237 Dld~A~~ii~nAKtqrPs~-----CNA~EtLLVh~~ia~~fLp~l~~~l~~~gvelr-~d~~~~~~~~~~~~~A~e~Dw~ 310 (417)
T COG0014 237 DLDKALKIIVNAKTQRPSV-----CNAAETLLVHRAIAKSFLPKLANALQEAGVELR-GDAEALALLPDAVKPATEEDWD 310 (417)
T ss_pred CHHHHHHHHHcccCCCCcc-----cchHHHHHcCHHHHHHhHHHHHHHHHhcCeEEE-cCHHHHHhccccCCCCchhhHH
Confidence 9999999999999999988 999999999999999999999877663 22221 11111111211
Q ss_pred ----------CCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHH
Q psy11677 380 ----------LNPEDRAKAIYNLADLLISKQADLLDANSKDLSDA 414 (462)
Q Consensus 380 ----------ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a 414 (462)
-.-+.-.+++.+|..-=..|.+-|+.+|..--+..
T Consensus 311 tEyLd~ilavkvVd~ld~AI~HIn~y~S~HsdaIiTe~~~~a~~F 355 (417)
T COG0014 311 TEYLDLILAVKVVDSLDEAIAHINTYGSGHSDAIITEDYANAERF 355 (417)
T ss_pred HHhhhheeEEEEeCCHHHHHHHHHHhCCCCCcceeeCCHHHHHHH
Confidence 11223456777777777788888888887765544
No 2
>KOG4165|consensus
Probab=100.00 E-value=4.4e-49 Score=389.12 Aligned_cols=249 Identities=32% Similarity=0.425 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhcc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRK 196 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~ 196 (462)
.+++++.||.+++.|+. +|++|..+.+.|++||++|++. ++.|++|++
T Consensus 2 ~e~~a~~aR~a~r~LqaLs~e~R~~il~~iad~L~~~~~~I~~aN~~Dla~Ake~GL~~sll~RL~l~~~K~~sl~~g~~ 81 (433)
T KOG4165|consen 2 VEEMAENAREAGRILQALSNEDRADILHHIADLLVDNEKEILAANKKDLAEAKEAGLAESLLKRLDLSPGKISSLAAGLR 81 (433)
T ss_pred HHHHHHHHHHHhhHHHhcChhhHHHHHHHHHHHHHhhHHHHHhcchhhHHHHHhcCccHHHHHHhcCChHHHHHHHHHHH
Confidence 57899999999999988 9999999999999999999987 999999999
Q ss_pred ccccccccCCC-----------------CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHH
Q psy11677 197 IGTFFTDASAQ-----------------SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYF 242 (462)
Q Consensus 197 i~t~~a~~~d~-----------------~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l 242 (462)
+|++++|| +++||+||+.|||||| |+|+++ |||.||| ++|
T Consensus 82 ---~ia~~edpvGRVl~~~~ladgL~L~qvt~PiGvLLVIFESR--Pd~l~qiasLAi~SgN~llLKGGkEa~~Sn-~~L 155 (433)
T KOG4165|consen 82 ---QIAELEDPVGRVLKKTRLADGLELEQVTVPIGVLLVIFESR--PDCLPQIASLAIASGNGLLLKGGKEAAHSN-AAL 155 (433)
T ss_pred ---HHHhcccchhhheeeeeccCCceEEEeeccceEEEEEeccC--chHHHHHHHHHHhcCCeEeecCchhhhhhH-HHH
Confidence 99999985 4699999999999999 999888 9999999 999
Q ss_pred H----hhcCCC----CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHH
Q psy11677 243 T----KMLPRY----PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314 (462)
Q Consensus 243 ~----~al~~~----~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~ 314 (462)
+ ++|..+ ++||+|++||+|.+||++++||||||||||+.||+.|+++++ |||+||++|+||+|||++||++
T Consensus 156 ~~~v~~al~~~~~~~~aV~LV~sREev~dLl~ld~~IDLvIPRGSs~LVr~Ik~~tk-IPVLGHA~GichvYvd~dad~~ 234 (433)
T KOG4165|consen 156 HKLVQEALGTHGGPGKAVQLVTSREEVSDLLKLDDYIDLVIPRGSSDLVRSIKDTTK-IPVLGHAEGICHVYVDKDADLD 234 (433)
T ss_pred HHHHHHHhhhccCchhhhhheecHHHHHHHhhhhhheeEEecCCcHHHHHHHhhccc-CcccccccceeEEEeccccCHH
Confidence 9 888877 799999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCCchhHHHHHHhhhccc-ccccChhhHHHH-HHhHHHHHHHHHHHHHHHhcCCHHHH-------
Q psy11677 315 KAIKIARSGSRVLQGLNPEDRAKAIYNLADQGE-MDVSGLPCLLLF-IRLGSLFISGTRSGSRVLQGLNPEDR------- 385 (462)
Q Consensus 315 ~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~Ar~As~~L~~ls~~~r------- 385 (462)
||.+|+.|+||.||++ |||+|.++.+.- ..-.+.+.++.+ .+.|+-+ ..-...+..|.-..++.+
T Consensus 235 kA~riv~DaK~dYPAa-----CNAmETLLIh~dl~~~~~~~~l~~~l~~~gVtl-~agpkl~~~l~~~p~e~~s~~~Ey~ 308 (433)
T KOG4165|consen 235 KAKRIVRDAKCDYPAA-----CNAMETLLIHKDLEQSPFFDDLINMLKEEGVTL-HAGPKLAALLKFSPPEAKSFNTEYG 308 (433)
T ss_pred HHHHHHhcccCCCchh-----hhhHHHHhccHhhhhcchHHHHHHHHHhcCeEE-ecChhHHhhcCcCCchhhhhhhhhc
Confidence 9999999999999998 999999998874 333344444433 3333322 222233333333223322
Q ss_pred ------------HHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 386 ------------AKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 386 ------------n~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.+|-.-=..+.+-|+.+|..-
T Consensus 309 ~l~~~ievV~~v~~Ai~HI~~hgS~HTD~IvTe~~~~ 345 (433)
T KOG4165|consen 309 SLECTIEVVDSVQSAIDHIHTHGSSHTDCIVTENEAT 345 (433)
T ss_pred chheeeeecccHHHHHHHHHhcCCcccceEEecCHHH
Confidence 3455555555556777777777654
No 3
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=100.00 E-value=8.7e-40 Score=362.46 Aligned_cols=304 Identities=35% Similarity=0.559 Sum_probs=259.9
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH-hhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD-TVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~-~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
|+|||++|+++|..++||+|+++|||||||++||++|++++|++++..+.. .+..+..+.+++|||.+|++++..+.++
T Consensus 166 ~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~ 245 (715)
T TIGR01092 166 FWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYG 245 (715)
T ss_pred ecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHC
Confidence 789999999999999999999999999999999988999999999876554 4444556678999999999999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCc------HHHHHHHHHHHHHHHHH------------HHHHHH
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP------VEVLAENVNLKMEILVN------------SATWAL 171 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~------~~~ia~~AK~As~~L~~------------iA~aL~ 171 (462)
|++++|++|..++.|.+++.|+..||+|.++.+ ++. +..++.+|+.|.+.+.. +++.|+
T Consensus 246 gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~---~~~~~~~~~~~~~~~~A~~A~~~w~~~~~~~R~~~L~~la~~l~ 322 (715)
T TIGR01092 246 GTPVIIASGTAPKNITKVVEGKKVGTLFHEDAH---LWPTVEQTGERDMAVAARESSRMLQALSSEQRKEILHDIADALE 322 (715)
T ss_pred CCeEEEeCCCCcchHHHHhcCCCCceEecccch---hhhhhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 222 45567788888775443 999999
Q ss_pred hCCchhhcCchhcHHH--------------------HHHHHhhccccccccccCCC-----------------CCCCCce
Q psy11677 172 DRGVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDASAQ-----------------SGGTPVE 214 (462)
Q Consensus 172 ~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~~d~-----------------~~~~PlG 214 (462)
++.++|+.+|.+|+.. ++.+++.++ .++.+.++ .++.|+|
T Consensus 323 ~~~eei~~e~gkdl~~a~~~~~~~~~~~el~~~~~ei~~~~~~l~---~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~G 399 (715)
T TIGR01092 323 DNEDEILAENKKDVAAAQGAGYAASLVARLSMSPSKISSLAISLR---QLAAMEDPIGRVLKRTRIADNLILEKTSVPIG 399 (715)
T ss_pred HHHHHHHHHHhhhHHHHHhcCcchhHHHHHhCCHHHHHHHHHHHH---HHhcCCCcccccccccccCCCceeEEEEeece
Confidence 9999999999999973 556777777 76654321 2378999
Q ss_pred eeEEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC---CeEEeecCHHHHHHHhcCCCC
Q psy11677 215 VLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY---PLHSQVSTREEISDLLSMEKH 270 (462)
Q Consensus 215 Vi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~---~~v~~v~~r~~~~~ll~~~~~ 270 (462)
|+++|++.+ |.++.. +++-+|+ ..|+ ++|.+. +++++|++++.+.++|..+..
T Consensus 400 VV~~I~PwN--P~~~~~~~~~ALaaGN~vvlKpse~tp~t~-~~l~~l~~~alp~g~~~~~~~~v~~~~~~~~~l~~~~~ 476 (715)
T TIGR01092 400 VLLIVFESR--PDALVQIASLAIRSGNGLLLKGGKEAARSN-AILHKVITEAIPIHVGKKLIGLVTSREEIPDLLKLDDV 476 (715)
T ss_pred EEEEEeCCC--hHHHHHHHHHHHHhCCEEEEcCcccchHHH-HHHHHHHHHHcCCCCCCcEEEEeCChHHHHHHHhcCCC
Confidence 999999998 875422 7777888 7777 555543 589999888889999999999
Q ss_pred ccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhccccc
Q psy11677 271 IDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 271 iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
||+|.++||....+.|.+.+. +||..+..|+|++||++|||+++|++++.+++... ...|++...+..++.|.
T Consensus 477 vd~I~fTGS~~vG~~i~~~A~-~pv~lElgGk~p~iV~~dADl~~A~~~i~~~~~~~-----GQ~C~a~~rvlV~~~i~ 549 (715)
T TIGR01092 477 IDLVIPRGSNKLVSQIKKSTK-IPVLGHADGICHVYVDKSASVDMAKRIVRDAKCDY-----PAACNAMETLLVHKDLL 549 (715)
T ss_pred ccEEEEcCCHHHHHHHHHhCC-CCEEEEcCCcceEEECCCCCHHHHHHHHHHHhCCC-----CCccccCcEEEEehhhc
Confidence 999999999999999999995 99999999999999999999999999999999775 35688888888888873
No 4
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=100.00 E-value=4.5e-38 Score=348.65 Aligned_cols=309 Identities=35% Similarity=0.540 Sum_probs=252.7
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH-hhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD-TVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~-~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.|+|||++|+++|..++||.|+|+|||||||++||++|++++|++++..+.. .+..++.+.++||||.+|+++|..+.+
T Consensus 173 ~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~ 252 (718)
T PLN02418 173 IFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAAS 252 (718)
T ss_pred eecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988999999999875543 233445667899999999999999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCC---cHHHHHHHHHHHHHHHHH------------HHHHHHhC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGT---PVEVLAENVNLKMEILVN------------SATWALDR 173 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~---~~~~ia~~AK~As~~L~~------------iA~aL~~~ 173 (462)
+|++++|++|..++.|.++++|+..||+|.+++|--.++ .+..+...|+.|.+.+.. +|+.|.++
T Consensus 253 ~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~~~~~~~~~~~~~aA~~A~~~W~~~~~~eR~~~L~~~a~~l~~~ 332 (718)
T PLN02418 253 AGIPVVITSGYALDNIRKVLRGERVGTLFHQDAHLWAPSKEVGAREMAVAARESSRKLQALSSEERKKILLDVADALEAN 332 (718)
T ss_pred CCCcEEEeCCCCcchHHHHhcCCCCceEeccccchhhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999876621112 145556788888776544 89999999
Q ss_pred CchhhcCchhcHHH--------------------HHHHHhhccccccccccCC-----------------CCCCCCceee
Q psy11677 174 GVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDASA-----------------QSGGTPVEVL 216 (462)
Q Consensus 174 ~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~~d-----------------~~~~~PlGVi 216 (462)
.++|.+.|.+|++. ++.+++.++ ..+.+.+ ..++.|+|||
T Consensus 333 ~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~~~~~~---~~a~~~~~~g~~~~~~~~~~~~~~~~~r~PlGVV 409 (718)
T PLN02418 333 EELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASLAASIR---QLADMEDPIGRVLKRTEVADGLVLEKTSCPLGVL 409 (718)
T ss_pred HHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHHHHHHH---HHhcCccccCccccccccCCCceEEEEEEeeeEE
Confidence 99999998665442 234444444 3333221 1237999999
Q ss_pred EEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC---CeEEeecCHHHHHHHhcCCCCcc
Q psy11677 217 AEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY---PLHSQVSTREEISDLLSMEKHID 272 (462)
Q Consensus 217 ~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~---~~v~~v~~r~~~~~ll~~~~~iD 272 (462)
++||+.+ |..+.. +++-.|+ ..|+ ++|.+. +++++|+.++.+.++|..+.+||
T Consensus 410 ~~I~Pwn--P~~~~~kiapALaaGNtVVlKPse~tp~s~-~~l~~l~~eAlP~gv~~~v~nvv~g~~~~g~~L~~~~~v~ 486 (718)
T PLN02418 410 LIIFESR--PDALVQIASLAIRSGNGLLLKGGKEAARSN-AILHKVITDAIPKTVGGKLIGLVTSRDEIPDLLKLDDVID 486 (718)
T ss_pred EEEeCCC--cHHHHHHHHHHHHhCCEEEEeCCccchHHH-HHHHHHHHHHccccCCcceEEEeCCcHHHHHHHhhCCCCC
Confidence 9999997 975433 6777888 7777 444432 35999987778899999999999
Q ss_pred EEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccc
Q psy11677 273 LIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDV 350 (462)
Q Consensus 273 liIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (462)
+|.++||...|+++...+ .+||+.+..|+||+||++|||+++|++.+++++..+ ..+|++++.+..|..|..
T Consensus 487 ~V~FTGSt~~i~~~aa~~-~k~v~lELGGk~p~iV~~DADld~A~~~i~~~~~~n-----GQ~C~a~~RllVh~~i~d 558 (718)
T PLN02418 487 LVIPRGSNKLVSQIKAST-KIPVLGHADGICHVYVDKSADMDMAKRIVVDAKTDY-----PAACNAMETLLVHKDLVQ 558 (718)
T ss_pred EEEEeCCHHHHHHHHHhc-CCCEEEeCCCcceEEEeCCCCHHHHHHHHHHHhCCC-----CCccccCcEEEEeccccc
Confidence 999999999999999887 499999999999999999999999999999999985 247999999999988843
No 5
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.4e-32 Score=271.03 Aligned_cols=185 Identities=25% Similarity=0.341 Sum_probs=159.3
Q ss_pred hhhhhHHHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccc
Q psy11677 8 LCEQHFLTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTY 75 (462)
Q Consensus 8 ~~~~~~~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I 75 (462)
-+-.|.+++|+++++.+ .++||+|||||+|||++|.+++||+|++|||+||+||+||+ ||+|++|+++
T Consensus 114 ~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V 193 (369)
T COG0263 114 RRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEV 193 (369)
T ss_pred HHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhh
Confidence 34456677777777766 47789999999999999999999999999999999999998 9999999999
Q ss_pred cH--HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHH
Q psy11677 76 TS--EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLA 153 (462)
Q Consensus 76 ~~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia 153 (462)
+. .|++.++++++|..|||||.+|+.||+.|+++|++|+|++|..|+.+.+++.|+..||+|.+.... .
T Consensus 194 ~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~~----~----- 264 (369)
T COG0263 194 EEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAKE----R----- 264 (369)
T ss_pred cccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCCcc----h-----
Confidence 86 467899999999999999999999999999999999999999999999999999999999987653 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcCchhcHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 154 ENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 154 ~~AK~As~~L~~iA~aL~~~~~~IL~AN~~D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
.++|+ .|++..+...|..++++|+. +.+.++ .+.-.|.||+.|- |...
T Consensus 265 ~~ark-----~Wi~~~~~~~G~i~iD~GA~-----~Al~~~------------gkSLLpaGV~~V~G~F~rG 314 (369)
T COG0263 265 LNARK-----QWIAGALPPAGEITVDAGAV-----EALLEQ------------GKSLLPAGVTSVEGNFSRG 314 (369)
T ss_pred hhhhH-----HHhhcCCCCCceEEECccHH-----HHHHhc------------CCccccccceEeeeeecCC
Confidence 33554 78888888899999999984 666644 2447788888887 6555
No 6
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.94 E-value=1.8e-27 Score=245.79 Aligned_cols=178 Identities=28% Similarity=0.361 Sum_probs=151.1
Q ss_pred HHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccH--Hh
Q psy11677 14 LTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTS--EM 79 (462)
Q Consensus 14 ~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~--~e 79 (462)
++.+..+++.+ .++|+.|||||++|+++|.+++||.|+++|||||||++||+ +|++++|++|+. .+
T Consensus 118 ~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e 197 (368)
T PRK13402 118 RNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAE 197 (368)
T ss_pred HHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHH
Confidence 45555566553 23567889999999999999999999999999999999998 899999999986 56
Q ss_pred HHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHH
Q psy11677 80 RDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLK 159 (462)
Q Consensus 80 ~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~A 159 (462)
+..+.++.++.++||||.+|+++|..|.++|++++|++|..|+.|.+++.|+..||+|.+...+ ..+|+
T Consensus 198 ~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~----------~~~rk- 266 (368)
T PRK13402 198 IYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEEKP----------MQEKK- 266 (368)
T ss_pred HHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCCCC----------ccHHH-
Confidence 6677766677899999999999999999999999999999999999999999999999987664 44554
Q ss_pred HHHHHHHHHHHHhCCchhhcCchhcHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 160 s~~L~~iA~aL~~~~~~IL~AN~~D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
.|++..+..+|..++++++. +++.++ .+.-.|.||++|. |+..
T Consensus 267 ----~Wi~~~~~~~G~i~vd~ga~-----~al~~~------------~~sLl~~gi~~v~g~F~~g 311 (368)
T PRK13402 267 ----HWMAHTSGPQGEIVVENDFD-----RALDNH------------SEQLTSDDVVEIKGDFSVG 311 (368)
T ss_pred ----HHHhCCCCCCeeEEECccHH-----HHHHhc------------CCcccccceEEEeCEecCC
Confidence 78888899999999999994 566543 3457889999987 7777
No 7
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.92 E-value=7.7e-26 Score=233.59 Aligned_cols=165 Identities=28% Similarity=0.378 Sum_probs=136.4
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHH--hHHhhhhcCCCCCCCCcchHHHHHH
Q psy11677 27 KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSE--MRDTVQFGQKSKVGTGGMDSKVNSA 103 (462)
Q Consensus 27 ~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~--e~~~l~~~~~s~~gtGGM~~Kl~AA 103 (462)
.++.|+|||++|+++|.+++||.|+|+|||||||++||+ +|++++|++++.. +...+.+++++.+++|||.+|++|+
T Consensus 138 ~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa 217 (363)
T TIGR01027 138 EEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAA 217 (363)
T ss_pred eecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHH
Confidence 356789999999999999999999999999999999997 8999999999864 3445665556679999999999999
Q ss_pred HHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcCchh
Q psy11677 104 TWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGM 183 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~As~~L~~iA~aL~~~~~~IL~AN~~ 183 (462)
..|.++|++++|+||..|+.|.+++.|+..||+|.+...+ ..+|+ .|++..+..+|..++++++.
T Consensus 218 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~----------~~~~k-----~wi~~~~~~~G~i~vD~gA~ 282 (363)
T TIGR01027 218 DLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQARR----------LRNRK-----FWIAFASEPAGEITVDAGAE 282 (363)
T ss_pred HHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCCCC----------ccHHH-----HHHhCCCCcCCeEEEChhHH
Confidence 9999999999999999999999999999999999986653 33453 67777777888888888873
Q ss_pred cHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 184 QKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 184 D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
+.+.+. ..--.|.||+.+. |+..
T Consensus 283 -----~al~~~------------g~sLl~~Gi~~v~g~F~~g 307 (363)
T TIGR01027 283 -----EALLER------------GKSLLPAGIVGVEGNFSRG 307 (363)
T ss_pred -----HHHHhc------------CCccCCccceeeECcccCC
Confidence 555542 1235677777776 6555
No 8
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.92 E-value=3e-25 Score=229.94 Aligned_cols=155 Identities=32% Similarity=0.493 Sum_probs=121.3
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccH--HhHHhhhhcCCCCCCCCcchHHHHHHH
Q psy11677 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTS--EMRDTVQFGQKSKVGTGGMDSKVNSAT 104 (462)
Q Consensus 28 ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~ 104 (462)
++.|+|||++|+++|..++||.|+|+|||||||++||+ +|++++|++++. .++.++.+++++.++||||.+|+++|.
T Consensus 147 ~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~ 226 (372)
T PRK05429 147 EIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAAR 226 (372)
T ss_pred cccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHH
Confidence 46789999999999999999999999999999999998 799999999987 567777766667899999999999999
Q ss_pred HHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCCchhhcCch
Q psy11677 105 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKMEILVN--SATWALDRGVSVVICNG 182 (462)
Q Consensus 105 ~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~As~~L~~--iA~aL~~~~~~IL~AN~ 182 (462)
.+.++|++++|+||..|+.|.++|+|+..||+|.+...+ .+..++||++..+..+....+ ++++|..++.+++..+.
T Consensus 227 ~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~-~~~~k~wi~~~~~~~g~i~vd~gA~~al~~~g~sLl~~Gi 305 (372)
T PRK05429 227 IATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEKP-LSARKRWIAGALQPAGEIVVDAGAVKALLERGKSLLPAGV 305 (372)
T ss_pred HHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCcc-chHHHHHHhcCCCCCCeEEECccHHHHHHhcCCccCccch
Confidence 999999999999999999999999999999999987663 111244444433332222222 44444444444444444
Q ss_pred h
Q psy11677 183 M 183 (462)
Q Consensus 183 ~ 183 (462)
.
T Consensus 306 ~ 306 (372)
T PRK05429 306 T 306 (372)
T ss_pred h
Confidence 3
No 9
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.88 E-value=8.9e-23 Score=204.44 Aligned_cols=110 Identities=57% Similarity=0.927 Sum_probs=102.1
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
++|+|||++|+++|..++||+|+++|||||||++||++|++++|++++..+...+..+..+.++||||.+|+++|..+.+
T Consensus 175 ~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~ 254 (284)
T cd04256 175 ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQ 254 (284)
T ss_pred ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988999999999987776665555677899999999999999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+|++++|++|..|+.|.+++.|+.+||+|.
T Consensus 255 ~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 255 GGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred CCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 999999999999999999999999999984
No 10
>KOG1154|consensus
Probab=99.88 E-value=1.1e-22 Score=194.83 Aligned_cols=133 Identities=47% Similarity=0.725 Sum_probs=118.2
Q ss_pred hhhHHHhHHHHHHHH---------------hcCCccccC---hHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcc
Q psy11677 10 EQHFLTNFNELFRSI---------------FQKLISIKD---NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM 71 (462)
Q Consensus 10 ~~~~~~~~~e~~~~~---------------~~~ei~~gd---nD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~Akl 71 (462)
..+.+.|++.++.++ +..+++|+| ||+|||++|.+++||+||+||||||+|+.+|.....++
T Consensus 127 d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~l 206 (285)
T KOG1154|consen 127 DEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKL 206 (285)
T ss_pred hHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCccee
Confidence 456777777777666 356778888 99999999999999999999999999998887666899
Q ss_pred cccccHHhHH-hhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 72 IWTYTSEMRD-TVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 72 I~~I~~~e~~-~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
|+.+++.+.. ...++++|.+|||||.+|+.||..|...|++|+|++|..|..|.+++.|..+||.|....+
T Consensus 207 i~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~~~ 278 (285)
T KOG1154|consen 207 IHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENITDIVEGKKVGTFFEQLKR 278 (285)
T ss_pred eeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHHHHHhhhhhhhhhhhccc
Confidence 9999987765 6667889999999999999999999999999999999999999999999999999986654
No 11
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.88 E-value=2.4e-22 Score=199.39 Aligned_cols=131 Identities=26% Similarity=0.459 Sum_probs=109.6
Q ss_pred hhhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcc---ccc
Q psy11677 10 EQHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKM---IWT 74 (462)
Q Consensus 10 ~~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~Akl---I~~ 74 (462)
-.+.++.++++++.+. ..|+.|+|||++|+++|..++||+|+++|||||||++||+ +|+|++ +++
T Consensus 114 ~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~ 193 (264)
T PTZ00489 114 TINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHE 193 (264)
T ss_pred hHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeecc
Confidence 3455666777777762 2267889999999999999999999999999999999997 789998 667
Q ss_pred ccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCC--ccccccccCC
Q psy11677 75 YTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR--KIGTFFTDAS 141 (462)
Q Consensus 75 I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~--~~GT~I~~~~ 141 (462)
+++.+.... .+..+.++||||.+|+++|..+.++|++++|++|+.|+.|.+++.|+ ..||+|.+.-
T Consensus 194 i~~~~~~~~-~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~~ 261 (264)
T PTZ00489 194 LSPDDLVAE-ATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPRV 261 (264)
T ss_pred CCHHHHHHh-cCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeecC
Confidence 777655433 34456789999999999999999999999999999999999999875 4799997653
No 12
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.88 E-value=2.7e-22 Score=199.26 Aligned_cols=132 Identities=33% Similarity=0.549 Sum_probs=110.1
Q ss_pred hhhhHHHhHHHHHHHHh-----------cCCcc--ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccc
Q psy11677 9 CEQHFLTNFNELFRSIF-----------QKLIS--IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWT 74 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~-----------~~ei~--~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~ 74 (462)
...+.++.++++++.+. ..++. |+|||++|+++|.+++||.|+|+|||||||++||+ +|++++|++
T Consensus 118 ~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~ 197 (266)
T PRK12314 118 SRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSE 197 (266)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEE
Confidence 33444555666666542 22333 89999999999999999999999999999999998 799999999
Q ss_pred ccH--HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 75 YTS--EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 75 I~~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|+. .+..++...+.+.++||||.+|++++..+.++|++++|+||+.|+.|.++++|+..||+|.+.
T Consensus 198 I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 198 VTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred ecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence 985 444455444566789999999999999999999999999999999999999999999999764
No 13
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=99.87 E-value=6.7e-22 Score=211.53 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhc-Cchh-------cH--------HHHHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVI-CNGM-------QK--------EAIKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~-AN~~-------D~--------~~~~~~~~~~~i~t~ 200 (462)
++.+..+||.|.+.+.. +|+.|.++.++|.. +|.. |- +.+..++.+.+ .
T Consensus 10 v~~av~~A~~A~~~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~~~~~~~~~~~~~~~~~~~~---~ 86 (488)
T TIGR02518 10 VRNLIRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDKVIKNVFAATIVYDSIKDMK---T 86 (488)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhhCc---c
Confidence 55566777777776554 88888888877776 3321 10 11445655555 3
Q ss_pred ccccC-C-----CCCCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHH----hhcCCC--
Q psy11677 201 FTDAS-A-----QSGGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY-- 249 (462)
Q Consensus 201 ~a~~~-d-----~~~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~-- 249 (462)
+-... + ..+++|+|||++|| +++ |++++. +++.+|| ..++ ++|.++
T Consensus 87 ~G~~~~~~~~~~~~~~~PlGVV~~I~P~n~--P~~~~~~k~~~AL~aGNaVIlKps~~a~~s~-~~~~~~l~~~l~eaGl 163 (488)
T TIGR02518 87 IGILSEDKEKKVIEIAVPVGVVAGLIPSTN--PTSTAIYKTLISIKARNAIVFSPHPNAKKCI-IETVKLMRKAAEEAGA 163 (488)
T ss_pred cceecCCCCcceEEEEecceEEEEEcccCC--hHHHHHHHHHHHHHcCCcEEEECCccchHHH-HHHHHHHHHHHHHcCc
Confidence 21111 1 13689999999999 999 997555 8999999 7754 666776
Q ss_pred --CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 --PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 --~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++|+|+ +++....|++.++ ||+|+||||.++++++.+ + ++||++++.|+||+|||+|||+++|++.+++||+
T Consensus 164 P~gvv~~v~g~~~e~~~~L~~~~~-vd~V~fTGs~~v~~~a~~-~-~~pv~~e~gGn~p~iV~~dADld~Aa~~iv~sk~ 240 (488)
T TIGR02518 164 PEGAIGCITVPTIEGTNELMKNKD-TSLILATGGEAMVKAAYS-S-GTPAIGVGPGNGPAYIERTANVKKAVRDIIDSKT 240 (488)
T ss_pred CcccEEEEcCCCHHHHHHHHhCCC-cCEEEEeCCHHHHHHHHH-c-CCCEEEEcCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 9999998 6999999999887 999999999999999954 4 5999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHhhhcccccccChhhHHHHHHhHHHHHHHHHHHH
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGS 374 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As 374 (462)
++ ++.+|++.+.+..+.. ++...+.+|.+.|++|+..++...
T Consensus 241 ~~----~Gq~C~a~~rllV~~~---i~d~f~~~L~~~g~~~~~~~~~~~ 282 (488)
T TIGR02518 241 FD----NGTICASEQSIIVEEC---NKDAVVEELKKQGGYFLTAEEAEK 282 (488)
T ss_pred cC----CCCCCCCCCEEEEeHH---HHHHHHHHHHHhhhhhcCHHHHHh
Confidence 94 3345666666655554 455889999999999998776543
No 14
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.86 E-value=1.1e-21 Score=193.01 Aligned_cols=110 Identities=42% Similarity=0.676 Sum_probs=102.5
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccccc--HHhHHhhhhcCCCCCCCCcchHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYT--SEMRDTVQFGQKSKVGTGGMDSKVNSATW 105 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~--~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~ 105 (462)
+.++|+|++|+.+|..++||+|+|+|||||||++||+ +|++++|++++ ..++.+++.+..+.+++|||.+|++++..
T Consensus 139 ~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~ 218 (251)
T cd04242 139 IRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARI 218 (251)
T ss_pred cccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHH
Confidence 5678899999999999999999999999999999998 79999999999 88888876556678999999999999999
Q ss_pred HHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 106 ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 106 a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+.++|++++|+||..|+.|.++|+|+..||+|.
T Consensus 219 a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 219 ATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251 (251)
T ss_pred HHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEeC
Confidence 999999999999999999999999999999984
No 15
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=99.85 E-value=3e-21 Score=197.18 Aligned_cols=95 Identities=34% Similarity=0.583 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..+.++||+|++.|+.+|+++||++|.+||+.|++++++||+||++||++|+++|++++|+|||.||++||++|+++|++
T Consensus 6 ~~~~~~Ak~A~~~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~Dl~~are~gl~~~m~DRL~L~~~Ri~~ma~gl~~ 85 (417)
T COG0014 6 EELGKRAKAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLSEAMLDRLALTPSRIEAMADGLRQ 85 (417)
T ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHcCCcHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccchhcc
Q psy11677 444 IAESSHTNVGKFVKTI 459 (462)
Q Consensus 444 ia~l~dDPvg~v~~~~ 459 (462)
|+.|| ||||+++..|
T Consensus 86 Va~L~-DPvGev~~~~ 100 (417)
T COG0014 86 VAALP-DPVGEVIDGW 100 (417)
T ss_pred HhcCC-CchHhhhccc
Confidence 99999 8999999855
No 16
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.83 E-value=2.4e-20 Score=183.03 Aligned_cols=127 Identities=28% Similarity=0.388 Sum_probs=108.8
Q ss_pred hhhhHHHhHHHHHHHHh------------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCccccccc
Q psy11677 9 CEQHFLTNFNELFRSIF------------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYT 76 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~------------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~ 76 (462)
++...++.++++++.+. ..++.++|+|++|+.+|..++||+|+|+|||||||++|| |++++|++++
T Consensus 112 ~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P--~~~~~i~~i~ 189 (252)
T cd04241 112 IVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP--PDAKLIPEID 189 (252)
T ss_pred eeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCC--CCCeEcceeC
Confidence 34455677778888742 123567899999999999999999999999999999999 8899999999
Q ss_pred HHhHHhhhh--cCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 77 SEMRDTVQF--GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 77 ~~e~~~l~~--~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
..+++++.. ++++.++||||.+|+++|..++++|++++|++|..|+.+.++++|+.+||+|
T Consensus 190 ~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 190 VGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred ccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence 977776642 1235678999999999999999999999999999999999999999999986
No 17
>KOG4165|consensus
Probab=99.76 E-value=1.9e-18 Score=172.23 Aligned_cols=95 Identities=42% Similarity=0.683 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
.++..||.++++|+.||+|+|.++|..+|++|..++.+|++||++||+.|++.||.++|++||.|++.||++|+.|+++|
T Consensus 4 ~~a~~aR~a~r~LqaLs~e~R~~il~~iad~L~~~~~~I~~aN~~Dla~Ake~GL~~sll~RL~l~~~K~~sl~~g~~~i 83 (433)
T KOG4165|consen 4 EMAENAREAGRILQALSNEDRADILHHIADLLVDNEKEILAANKKDLAEAKEAGLAESLLKRLDLSPGKISSLAAGLRQI 83 (433)
T ss_pred HHHHHHHHHhhHHHhcChhhHHHHHHHHHHHHHhhHHHHHhcchhhHHHHHhcCccHHHHHHhcCChHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcccchhccc
Q psy11677 445 AESSHTNVGKFVKTIL 460 (462)
Q Consensus 445 a~l~dDPvg~v~~~~~ 460 (462)
|+++ ||||+|+++|.
T Consensus 84 a~~e-dpvGRVl~~~~ 98 (433)
T KOG4165|consen 84 AELE-DPVGRVLKKTR 98 (433)
T ss_pred Hhcc-cchhhheeeee
Confidence 9999 89999999875
No 18
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.74 E-value=6.9e-18 Score=162.80 Aligned_cols=105 Identities=28% Similarity=0.376 Sum_probs=94.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCC-cchHHHHHHHHHHHc
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTG-GMDSKVNSATWALDR 109 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtG-GM~~Kl~AA~~a~~~ 109 (462)
.|||++|+++|.+++||.|+++|||||||++||+ +|++++|+++++.++.++... +..++| +|..|+.+++.+.+.
T Consensus 115 ~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~--~~~~~g~~~~~~~~a~~~~~~~ 192 (221)
T TIGR02076 115 HTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGS--SSVKAGSNEVVDPLAAKIIERS 192 (221)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcC--CCccCCCCceeHHHHHHHHHHC
Confidence 4999999999999999999999999999999997 899999999999988887532 345667 677899999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|++|+.|+.|.+++.|+..||.|.
T Consensus 193 ~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 193 KIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred CCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 99999999999999999999999999873
No 19
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.74 E-value=6.2e-18 Score=166.12 Aligned_cols=124 Identities=26% Similarity=0.242 Sum_probs=105.8
Q ss_pred cchhhhhHHHhHHHHHHHH----hc--CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHH
Q psy11677 6 TRLCEQHFLTNFNELFRSI----FQ--KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSE 78 (462)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~~----~~--~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~ 78 (462)
...||++.++.+.++++.+ +. -+.++++||++|+++|..++||.|+++|||||||++||+ +|+|++|+++++.
T Consensus 118 ~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~ 197 (249)
T PRK14556 118 DGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFS 197 (249)
T ss_pred CcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchh
Confidence 4579999888888888885 22 247899999999999999999999999999999999998 8999999999987
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+.... . ...| +..++..+.++|++++|+||.+|+.|.+++.|+..||+|.-
T Consensus 198 e~~~~-----~---l~vm--d~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 198 EVVSK-----E---LNVM--DLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred hhccc-----c---hHhH--HHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 76432 0 1123 35688889999999999999999999999999999999963
No 20
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.74 E-value=8.3e-18 Score=163.19 Aligned_cols=115 Identities=23% Similarity=0.243 Sum_probs=98.2
Q ss_pred HHhHHHHHHHHhc------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIFQ------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~~------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+++.++++.+.. .+.++++||++|+++|..++||.|+++|||||||++||+ +|++++|++++++|+.++
T Consensus 110 ~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~--- 186 (231)
T PRK00358 110 RRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK--- 186 (231)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---
Confidence 4556677776531 355678999999999999999999999999999999998 899999999998875443
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|....|+.+++.|.++|++++|+||..|+.|.++++|+..||+|.
T Consensus 187 -------g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 187 -------GLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred -------CCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 223358889999999999999999999999999999999999984
No 21
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.74 E-value=1.5e-17 Score=160.62 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=93.6
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCc-chHHHHHHHHHHH
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGG-MDSKVNSATWALD 108 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGG-M~~Kl~AA~~a~~ 108 (462)
..+||++|+++|..++||.|+++|||||||++||+ +|++++|+++++.++.++....+ .+.|+ |..++.+++.+.+
T Consensus 114 ~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~--~~~g~~~~~d~~a~~~~~~ 191 (221)
T cd04253 114 GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSS--WKAGSNEPFDPLAAKIIER 191 (221)
T ss_pred CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCC--cCCCCCcchHHHHHHHHHH
Confidence 46999999999999999999999999999999998 89999999999998887753322 22333 6788999999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.|++++|+||+.|+.|.++|+|+..||.|.
T Consensus 192 ~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~ 221 (221)
T cd04253 192 SGIKTIVVDGRDPENLERALKGEFVGTIIE 221 (221)
T ss_pred CCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 999999999999999999999999999884
No 22
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.73 E-value=1.5e-17 Score=161.60 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=99.1
Q ss_pred HHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
++.++++++.+. ..++++++||++|+++|..++||.|+++|||||||++||+ +|+|++|++++..|..++
T Consensus 108 ~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~--- 184 (231)
T PRK14558 108 YDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM--- 184 (231)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---
Confidence 455666666642 1257899999999999999999999999999999999998 899999999998877664
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
+...| +..++..|.++|++++|+||.+|+.|.+++.|+..||+|.++
T Consensus 185 -----g~~~~--d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 185 -----GLKVM--DTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVPD 231 (231)
T ss_pred -----Ccccc--cHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence 12234 356888888999999999999999999999999999999763
No 23
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.73 E-value=1.6e-17 Score=165.88 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=101.9
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.+. .++..++|+|.+|+.+|..++||+|+|+|||||||+++|+ ++++|++++..|+.+
T Consensus 148 ~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~--~~~~i~~i~~~e~~~ 225 (279)
T cd04250 148 PELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND--PGSLISEISLKEAEE 225 (279)
T ss_pred HHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC--CccccccCCHHHHHH
Confidence 456667777652 2233457999999999999999999999999999999884 479999999999888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
+.. +.+++|||.+|+++|..++++|+ +|+|++|..|+. +.++|++++.||+|
T Consensus 226 l~~---~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 226 LIA---DGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHH---cCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 763 34789999999999999999998 699999999996 79999999999986
No 24
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.73 E-value=1.7e-17 Score=164.92 Aligned_cols=120 Identities=28% Similarity=0.393 Sum_probs=102.9
Q ss_pred hhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHh
Q psy11677 11 QHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM 79 (462)
Q Consensus 11 ~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e 79 (462)
.--.+.++.+++.+. ..++.++|+|.+|+.+|.+++||+|+|+|||||||+++|. ++++|++++..+
T Consensus 136 ~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~--~~~~i~~i~~~e 213 (268)
T PRK14058 136 EVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD--EGSLIERITPEE 213 (268)
T ss_pred EECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC--CCcCccCcCHHH
Confidence 333566777777752 2245678999999999999999999999999999999884 478999999988
Q ss_pred HHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 80 RDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 80 ~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+.++. .+++|||.+|+++|..+.++|+ +++|++|+.|+.|..++.|. ||+|.+
T Consensus 214 ~~~l~-----~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 214 AEELS-----KAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GTVIVN 267 (268)
T ss_pred HHHHh-----hccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEEec
Confidence 87764 2589999999999999999999 99999999999999999875 999975
No 25
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.72 E-value=3e-17 Score=164.12 Aligned_cols=119 Identities=28% Similarity=0.334 Sum_probs=104.9
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.+. ..++.++|+|++|+.+|..++|++|+|+|||||||++ ++++|++++..|+.+
T Consensus 152 ~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~-----~~~~i~~i~~~e~~~ 226 (283)
T PRK00942 152 PALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD-----KGQLISELTASEAEE 226 (283)
T ss_pred HHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC-----CCcccccCCHHHHHH
Confidence 567778888762 3356779999999999999999999999999999986 489999999999887
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~ 140 (462)
+.. ..+++|||.+|+++|..++++|+ +|+|++|..|+. |.++|+|+++||+|.++
T Consensus 227 ~~~---~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 227 LIE---DGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHH---cCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 763 34789999999999999999998 799999999999 99999999999999863
No 26
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.71 E-value=3.9e-17 Score=163.75 Aligned_cols=122 Identities=25% Similarity=0.351 Sum_probs=101.1
Q ss_pred hHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhH
Q psy11677 12 HFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR 80 (462)
Q Consensus 12 ~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~ 80 (462)
-..+.++.+++.+. ..+....|+|++|+.+|..++||+|+|+|||||||+++ .+| +++|++++..|+
T Consensus 149 v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~d~-~~~i~~i~~~e~ 226 (284)
T CHL00202 149 VDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADI-NDP-NSLISTLNIKEA 226 (284)
T ss_pred cCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCC-CCC-CCccccccHHHH
Confidence 33456677777652 11223469999999999999999999999999999842 334 489999999888
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFT 138 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~ 138 (462)
.++.. +.+++|||.+|+++|..++++|+ +++|++|+.|+. +.++|++++.||+|.
T Consensus 227 ~~l~~---~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 227 RNLAS---TGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHh---cCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 88762 34789999999999999999999 689999999997 799999999999985
No 27
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.71 E-value=2.9e-17 Score=166.90 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=90.1
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH--H
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL--D 108 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~--~ 108 (462)
|+|||++|+++|..++||+|+++|||||||+++| +|++++|++++..++..+... +.+++|||.+|+++|..++ +
T Consensus 211 ~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~-~~~a~~i~~i~~~e~~~~~~~--~~~~tGGM~~Kl~aA~~a~~~~ 287 (314)
T PRK12353 211 VIDKDFASAKLAELVDADLLIILTAVDKVYINFG-KPNQKKLDEVTVSEAEKYIEE--GQFAPGSMLPKVEAAISFVESR 287 (314)
T ss_pred ecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC-CCCCeECcCcCHHHHHHHHhc--CCcCCCCcHHHHHHHHHHHHHc
Confidence 5888999999999999999999999999999765 688999999999888777632 3578999999999999988 6
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
.|++++|++ ++.+.+++.|+ .||+|.+
T Consensus 288 ~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 288 PGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 688999997 67888999998 8999964
No 28
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.71 E-value=4.1e-17 Score=158.32 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=98.6
Q ss_pred HHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+++.++++.+. ..++++++||++|+++|..++||+|+++|||||||++||+ +|++++|+++++.|+.++..
T Consensus 108 ~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~- 186 (229)
T cd04239 108 RRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL- 186 (229)
T ss_pred HHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc-
Confidence 455666666642 2256789999999999999999999999999999999998 79999999999988877631
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|..+..++..+.+.|++++|+||+.|+.+.++++|+..||+|.
T Consensus 187 ---------~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 187 ---------KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ---------CCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 4556778888999999999999999999999999998999874
No 29
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.71 E-value=1.7e-17 Score=161.04 Aligned_cols=121 Identities=27% Similarity=0.362 Sum_probs=105.4
Q ss_pred hhhhHHHhHHHHHHHHh--------------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccc
Q psy11677 9 CEQHFLTNFNELFRSIF--------------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIW 73 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~--------------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~ 73 (462)
.++...+.++++++.+. ..++.++++|++|+.+|..++|++|+|+|||||||++||+ +|++++|+
T Consensus 113 ~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~ 192 (248)
T cd02115 113 ITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLS 192 (248)
T ss_pred ceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECC
Confidence 34445666777777651 2335679999999999999999999999999999999998 79999999
Q ss_pred cccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 74 TYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 74 ~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
++++.|+.++.. .|+|..|++++..+.++|++++|+|+..|+.| ++|++++.||+|
T Consensus 193 ~i~~~e~~~l~~-------~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 193 ELTYEEAAELAY-------AGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred cCCHHHHHHHHH-------cCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 999988887752 47799999999999999999999999999999 999999999986
No 30
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.71 E-value=6.1e-17 Score=164.08 Aligned_cols=101 Identities=26% Similarity=0.376 Sum_probs=89.8
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++|||++|+++|..++||+||++|||||||++ |.+|++++|++++..++..+.. .+.+++|||.+|+++|..+++.|
T Consensus 208 ~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~~~p~a~~i~~it~~e~~~~~~--~g~~~tGgM~~Kl~AA~~~~~~g 284 (310)
T TIGR00746 208 VIDKDLASEKLAEEVNADILVILTDVDAVYIN-YGKPDEKALREVTVEELEDYYK--AGHFAAGSMGPKVEAAIEFVESG 284 (310)
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-CCCCCCcCCcCcCHHHHHHHHh--cCCcCCCCcHHHHHHHHHHHHhC
Confidence 35999999999999999999999999999986 5678999999999999888763 35688999999999998888775
Q ss_pred -CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 -VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 -v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+++|++ ++.+.+++.|+ .||+|.
T Consensus 285 ~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 285 GKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 5999997 68899999999 999985
No 31
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.70 E-value=7.4e-17 Score=158.92 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=103.3
Q ss_pred hhhhhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCccccccc
Q psy11677 8 LCEQHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYT 76 (462)
Q Consensus 8 ~~~~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~ 76 (462)
.++.-..+.++++++.+. ..++.++|+|++|+.+|..++||+|+|+|||||||++ ++++|++++
T Consensus 122 ~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~-----~~~~i~~i~ 196 (256)
T cd04238 122 EVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD-----PGSLISELT 196 (256)
T ss_pred ceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCCccccCC
Confidence 344445667778888752 2346788999999999999999999999999999986 379999999
Q ss_pred HHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcC-Ccccccc
Q psy11677 77 SEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAG-RKIGTFF 137 (462)
Q Consensus 77 ~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g-~~~GT~I 137 (462)
..|+.++.. +.+++|||.+|+++|..+++.|+ +++|++|+.|+.|.+++.| ++.||+|
T Consensus 197 ~~e~~~~~~---~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 197 PKEAEELIE---DGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred HHHHHHHHH---cCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 988887763 34779999999999999999987 7999999999999888877 6789986
No 32
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.70 E-value=7.6e-17 Score=155.83 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=105.9
Q ss_pred HHhHHHHHHHHhcC------------CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhH
Q psy11677 14 LTNFNELFRSIFQK------------LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMR 80 (462)
Q Consensus 14 ~~~~~e~~~~~~~~------------ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~ 80 (462)
.+.+.++++.++.. ++.+.|.|.++..+|..+++|+++|+|||||||++||. .|+++.++++...
T Consensus 117 l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~-- 194 (252)
T COG1608 117 LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGR-- 194 (252)
T ss_pred HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhh--
Confidence 45667777777432 46789999999999999999999999999999999997 8888888877654
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
...+++++.++||||..|++++....+.|.+++|+||..|++|.+++.|+.+||.|.
T Consensus 195 -~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 195 -VALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred -hhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHHhcCCCCceEec
Confidence 233455667999999999999999999999999999999999999999999999985
No 33
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.69 E-value=1e-16 Score=157.77 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=102.6
Q ss_pred chhhhhHHHhHHHHHHHH----hcC--CccccChHHHHHHHHHHcCCCeEEEE-ecCcccccCCCC-CCCCcccccccHH
Q psy11677 7 RLCEQHFLTNFNELFRSI----FQK--LISIKDNDSLAAMLAAEIQADLLILM-SDVNGIYTKAPW-EEGAKMIWTYTSE 78 (462)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~----~~~--ei~~gdnD~lAa~lA~~l~Ad~LIiL-TDVdGVY~~dP~-~p~AklI~~I~~~ 78 (462)
..|++....++.+.++.+ +.. +.++.++|++|+++|..++||.|+++ |||||||++||+ +|+|++|+++++.
T Consensus 108 ~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~ 187 (247)
T PRK14557 108 AVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYN 187 (247)
T ss_pred cccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChh
Confidence 455665556677777774 223 46889999999999999999999999 599999999998 8999999999987
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
|.... + ..-|. ..|+..|.++|++++|+||.+|+.|.+++.|+..||+|.+.+.
T Consensus 188 e~~~~----~----~~~~~--~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 188 DVVRQ----N----IQVMD--QAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 241 (247)
T ss_pred hhccc----C----HHHHH--HHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence 66210 0 11243 3588889999999999999999999999999999999987764
No 34
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.68 E-value=5.9e-17 Score=160.83 Aligned_cols=104 Identities=24% Similarity=0.277 Sum_probs=89.4
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL 107 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~ 107 (462)
.+++|||++|+++|..++||.|+++|||||||++||+ +|++++|++++..++.++... ....++||.+|++++.
T Consensus 158 ~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~--~~~~~~~~~~~l~aa~--- 232 (262)
T cd04255 158 IPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLD--DLVLERPVLDLLQNAR--- 232 (262)
T ss_pred CCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcC--CCCCcHHHHHHHHHhC---
Confidence 5688999999999999999999999999999999998 799999999999887766411 1124788888887753
Q ss_pred HcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 108 DRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 108 ~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
..++++|++|+.|+.|.+++.|+..||+|.
T Consensus 233 -~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 233 -HVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred -CCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence 225999999999999999999999999984
No 35
>PLN02512 acetylglutamate kinase
Probab=99.68 E-value=2.2e-16 Score=160.11 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=100.4
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.+. ..+....|+|++|+.+|..|+||+|+|+|||||||+++| +++++|++++..|+.+
T Consensus 176 ~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~--~~~~lI~~i~~~e~~~ 253 (309)
T PLN02512 176 PTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKD--DPGSLVKELDIKGVRK 253 (309)
T ss_pred HHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC--CCcCCCcccCHHHHHH
Confidence 455666666642 112233599999999999999999999999999998764 3478999999998888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTD 139 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~ 139 (462)
+.. ..+++|||.+|+++|..+++.|+ +++|++|..|+. +.++|++++.||+|.+
T Consensus 254 l~~---~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 254 LIA---DGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHh---CCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 762 35789999999999999999999 699999999988 5689999999999863
No 36
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.67 E-value=1.8e-16 Score=153.05 Aligned_cols=123 Identities=23% Similarity=0.261 Sum_probs=108.3
Q ss_pred chhhhhHHHhHHHHHHHH----hcC--CccccChHHHHHHHHHHcCCCeEEEEec-CcccccCCCC-CCCCcccccccHH
Q psy11677 7 RLCEQHFLTNFNELFRSI----FQK--LISIKDNDSLAAMLAAEIQADLLILMSD-VNGIYTKAPW-EEGAKMIWTYTSE 78 (462)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~----~~~--ei~~gdnD~lAa~lA~~l~Ad~LIiLTD-VdGVY~~dP~-~p~AklI~~I~~~ 78 (462)
..|+++.++...++++.+ +.. .-||+++|+.|++.|..++||.|+..|+ |||||++||+ +|+|++++++++.
T Consensus 108 ~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~ 187 (238)
T COG0528 108 QVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYD 187 (238)
T ss_pred cccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHH
Confidence 358999999999999987 444 7899999999999999999999999995 9999999998 8999999999999
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|+.+.. ..-| ...|+..+.++|++++++|+..+++|.+++.|+..||.|.+
T Consensus 188 e~l~~~--------l~vm--D~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 188 EVLKIG--------LKVM--DPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred HHHHhc--------Ceee--cHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 997652 1223 24688889999999999999999999999999999999863
No 37
>PRK12686 carbamate kinase; Reviewed
Probab=99.67 E-value=1.8e-16 Score=160.38 Aligned_cols=101 Identities=26% Similarity=0.333 Sum_probs=89.0
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc-
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR- 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~- 109 (462)
|+|+|.+|+++|..++||+|+|||||||||++ |.+|++++|++++..++..+... +.+++|||.+|+++|..+.+.
T Consensus 209 vid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~~p~ak~I~~I~~~e~~~li~~--g~~~tGGM~pKveAA~~av~~g 285 (312)
T PRK12686 209 VIDKDFASEKLAEQIDADLLIILTGVENVFIN-FNKPNQQKLDDITVAEAKQYIAE--GQFAPGSMLPKVEAAIDFVESG 285 (312)
T ss_pred ccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CCCCCCeECCccCHHHHHHHhhC--CCccCCCcHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999994 66789999999999998887642 457899999999999999976
Q ss_pred -CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 -GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 -Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|.+++|++ ++.+.+++.|+ .||+|.
T Consensus 286 ~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 286 EGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred CCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 45888887 67788999998 799985
No 38
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.67 E-value=3.4e-16 Score=154.03 Aligned_cols=116 Identities=27% Similarity=0.298 Sum_probs=99.3
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD 81 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~ 81 (462)
..+.++++++.++ ..++.+.++|++|+.+|..++|+ ++++|||||||++| +++|++++..|++
T Consensus 125 ~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~-----~~~i~~i~~~e~~ 198 (252)
T cd04249 125 DPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDAD-----KQLISELNAKQAA 198 (252)
T ss_pred cHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCC-----CcCccccCHHHHH
Confidence 3566777777752 34567789999999999999999 68999999999874 4799999998888
Q ss_pred hhhhcCCCCCCCCcchHHHHHHHHHHHcC-CeEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 82 TVQFGQKSKVGTGGMDSKVNSATWALDRG-VSVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 82 ~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G-v~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
++.. +..++|||.+|+.+|..+++.| ++++|++|+.|+.|.++|+|++.||+|
T Consensus 199 ~~~~---~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 199 ELIE---QGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred HHHh---cCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 8763 3478999999999999988876 599999999999999999999999986
No 39
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.66 E-value=3.5e-16 Score=152.48 Aligned_cols=117 Identities=23% Similarity=0.239 Sum_probs=98.8
Q ss_pred hHHHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEec-CcccccCCCC-CCCCcccccccHHhHHhh
Q psy11677 12 HFLTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSD-VNGIYTKAPW-EEGAKMIWTYTSEMRDTV 83 (462)
Q Consensus 12 ~~~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTD-VdGVY~~dP~-~p~AklI~~I~~~e~~~l 83 (462)
+..+.++++++.+. ..+++++|||.+|+++|..++||.|+++|| |||||++||+ +|++++|+++++.|....
T Consensus 109 ~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~ 188 (233)
T TIGR02075 109 YIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK 188 (233)
T ss_pred cCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc
Confidence 33566777777642 225789999999999999999999999999 9999999998 799999999998886542
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 84 QFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 84 ~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+.. ..++.++..+.++|++++|+||.+|+.|.+++.|+.+||+|.
T Consensus 189 --------~~~--~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 189 --------NLK--VMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred --------CHH--HHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 111 246778888999999999999999999999999999999984
No 40
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.65 E-value=8.9e-16 Score=149.37 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=96.2
Q ss_pred HHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+.+.++++.+. ..+.++.+||++|+++|..++||.|+++|||||||++||+ +|++++|++++..+..+.
T Consensus 110 ~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~--- 186 (231)
T cd04254 110 RRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK--- 186 (231)
T ss_pred HHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---
Confidence 355666666642 1135678999999999999999999999999999999998 799999999999877542
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+..+ .++.++..+.+.|++++|+||..|+.|.+++.|+..||+|.
T Consensus 187 -----~~~~--~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 187 -----GLKV--MDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred -----chhh--hHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 1223 46778888999999999999999999999999999999984
No 41
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.63 E-value=1.1e-15 Score=154.48 Aligned_cols=101 Identities=28% Similarity=0.422 Sum_probs=87.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+|+|++|+++|..++||.|+++|||||||+++ .+|++++|++++..++..+.. .+.+++|||.+|+++|..+.+.|
T Consensus 207 Vid~D~~AallA~~l~Ad~LiilTdVdGVy~~~-~~pda~~i~~Is~~e~~~l~~--~g~~~tGGM~pKv~aA~~~a~~g 283 (308)
T cd04235 207 VIDKDLASALLAEEINADLLVILTDVDNVYINF-GKPNQKALEQVTVEELEKYIE--EGQFAPGSMGPKVEAAIRFVESG 283 (308)
T ss_pred ccCccHHHHHHHHHcCCCEEEEEecCCeEECCC-CCCCCeEcCCcCHHHHHHHHh--cCccccCCcHHHHHHHHHHHHhC
Confidence 357799999999999999999999999999954 468999999999999887753 34678999999999999888875
Q ss_pred -CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 -VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 -v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 284 g~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 284 GKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred CCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 5888876 67799999998 799873
No 42
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.61 E-value=2.1e-15 Score=152.58 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=88.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+|+|.+|+++|..++||+|||+|||||||++ |.+|++++|++++..|+..+.. ...+.+|||.+|+++|..+++.|
T Consensus 211 ViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~~p~~~~i~~It~~e~~~~i~--~g~~~~GgM~pKv~AA~~~v~~g 287 (313)
T PRK12454 211 VIDKDLASELLAEELNADIFIILTDVEKVYLN-YGKPDQKPLDKVTVEEAKKYYE--EGHFKAGSMGPKILAAIRFVENG 287 (313)
T ss_pred ecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CCCCCCeEccccCHHHHHHHHh--cCCcCCCChHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999986 5578999999999999887753 23578999999999999888876
Q ss_pred C-eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 111 V-SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 111 v-~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
. +++|++ ++.+.+++.|+ .||+|.+
T Consensus 288 g~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 288 GKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 5 899985 56799999998 7999964
No 43
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.61 E-value=2.7e-15 Score=148.28 Aligned_cols=104 Identities=30% Similarity=0.372 Sum_probs=93.7
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
...+.|+.|..+|..|+|++||++|||+|||+++|+ | .+|++++..+++++.. ....+|||.+|+++|..|+++
T Consensus 160 ~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~-~--s~i~~~~~~~~~~li~---~~~i~~GMi~Kv~~a~~A~~~ 233 (265)
T COG0548 160 LNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGD-P--SLISELDAEEAEELIE---QGIITGGMIPKVEAALEALES 233 (265)
T ss_pred EeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCC-c--eeeccCCHHHHHHHHh---cCCccCccHHHHHHHHHHHHh
Confidence 447999999999999999999999999999997542 2 7999999999998873 347899999999999999999
Q ss_pred CC-eEEEEeCCChhH-HHHHHcCCcccccccc
Q psy11677 110 GV-SVVICNGMQKEA-IKQIVAGRKIGTFFTD 139 (462)
Q Consensus 110 Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~ 139 (462)
|+ +++|+||+.++. +.++|++.++||+|.+
T Consensus 234 Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 234 GVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred CCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 99 899999999999 8899999999999863
No 44
>PRK12354 carbamate kinase; Reviewed
Probab=99.60 E-value=2.8e-15 Score=151.23 Aligned_cols=101 Identities=29% Similarity=0.362 Sum_probs=87.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+|+|.+|+++|..++||+|+|||||||||++ |.+|++++|++++..++.++ .+++|||.+|+++|..+.+.|
T Consensus 202 ViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~-~~~p~~k~i~~it~~e~~~~------~f~~GgM~pKV~AA~~~~~~g 274 (307)
T PRK12354 202 VIDKDLAAALLAEQLDADLLLILTDVDAVYLD-WGKPTQRAIAQATPDELREL------GFAAGSMGPKVEAACEFVRAT 274 (307)
T ss_pred cCCccHHHHHHHHHcCCCEEEEEeCCcceecC-CCCCCCeECCCCCHHHHHhh------CCCcCChHHHHHHHHHHHHhC
Confidence 67999999999999999999999999999996 44688999999999888776 468999999999998887765
Q ss_pred C-eEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 111 V-SVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 111 v-~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
. +++|.+ ++.+.++|.|+ .||+|.+...
T Consensus 275 g~~viI~~---~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 275 GKIAGIGS---LEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CCEEEECC---HHHHHHHHCCC-CceEEecCCC
Confidence 5 788853 56789999997 7999987543
No 45
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=99.59 E-value=9e-15 Score=166.45 Aligned_cols=160 Identities=20% Similarity=0.166 Sum_probs=125.3
Q ss_pred CCCCceeeEEE-EeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHH
Q psy11677 209 GGTPVEVLAEI-WKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TRE 259 (462)
Q Consensus 209 ~~~PlGVi~~I-yEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~ 259 (462)
++.|+|||++| ++.+ |..+.. +++.+|+ ..++ ++|.++ ++||+|+ +++
T Consensus 105 ~~~P~GVv~~I~pwn~--P~~~~~~~~~~ALaaGN~vVlKps~~a~~t~-~~~~~l~~~~l~~aG~p~g~v~vv~g~~~~ 181 (862)
T PRK13805 105 IAEPVGVIAGITPTTN--PTSTAIFKALIALKTRNPIIFSFHPRAQKSS-IAAAKIVLDAAVAAGAPKDIIQWIEEPSVE 181 (862)
T ss_pred EeecceEEEEEeCCCC--hhHHHHHHHHHHHHhCCcEEEECCcchHHHH-HHHHHHHHHHHHHcCcCcccEEEecCCCHH
Confidence 48999999999 9999 986433 7888898 7777 555565 8999998 688
Q ss_pred HHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 260 ~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
...+|++.++ ||+|+++||.++++++.++ .+||++++.|+||+|||+|||+++|++.++++|++. ....|++.
T Consensus 182 ~~~~L~~~~~-vd~I~fTGs~~v~~~a~~~--~~pv~~e~gGk~p~iV~~dADl~~Aa~~i~~~k~~n----~GQ~C~a~ 254 (862)
T PRK13805 182 LTNALMNHPG-IALILATGGPGMVKAAYSS--GKPALGVGAGNVPAYIDKTADIKRAVNDILLSKTFD----NGMICASE 254 (862)
T ss_pred HHHHHHcCCC-ccEEEecCCHHHHHHHHhc--CCCeEEECCCCCeEEEeCCCCHHHHHHHHHHhhhcc----CCCccCCC
Confidence 8999998776 9999999999999988654 599999999999999999999999999999999994 44467777
Q ss_pred HHhhhcccccccChhhHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11677 340 YNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQGLNPEDRAKAIYNLAD 394 (462)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~ 394 (462)
+.+..++.|. ...+.+|.+.|. ...+.+++.++...+.+
T Consensus 255 ~~v~V~~~i~---d~f~~~l~~~g~-------------~l~~~~~~~~v~~~i~~ 293 (862)
T PRK13805 255 QAVIVDDEIY---DEVKEEFASHGA-------------YFLNKKELKKLEKFIFG 293 (862)
T ss_pred ceEEEehhhH---HHHHHHHHHhCC-------------eeCCHHHHHHHHHHHhh
Confidence 7776666654 444445555553 23555555555554443
No 46
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.58 E-value=7.4e-15 Score=155.38 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=101.4
Q ss_pred HHHhHHHHHHHHhc-----------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH
Q psy11677 13 FLTNFNELFRSIFQ-----------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD 81 (462)
Q Consensus 13 ~~~~~~e~~~~~~~-----------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~ 81 (462)
-.+.++.++++++. ++....|.|++|+.+|..|+|++|+|+|||||||++ ++++|++++..+.+
T Consensus 157 ~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~-----~~~~i~~i~~~~~~ 231 (441)
T PRK05279 157 DAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE-----DGELIRELSPNEAQ 231 (441)
T ss_pred eHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC-----CCchhhhCCHHHHH
Confidence 34556667776632 233457999999999999999999999999999964 58999999999988
Q ss_pred hhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHH-HHHHcCCccccccccCC
Q psy11677 82 TVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 82 ~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~ 141 (462)
++.....+.+.+|||.+|+++|..++++|+ +++|++|..|+.| .++++.++.||.|.++.
T Consensus 232 ~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~ 293 (441)
T PRK05279 232 ALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMES 293 (441)
T ss_pred HHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCc
Confidence 776322245679999999999999999999 8999999999995 55666778999999863
No 47
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.57 E-value=5.6e-15 Score=144.19 Aligned_cols=91 Identities=23% Similarity=0.254 Sum_probs=81.5
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|+||++|+.+|.+++||.|+++|||||||++||+ +|++++|+++++.|+.++.. .|.+..|..++..+.++
T Consensus 148 ~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~-------~G~~~~~~~a~~~a~~~ 220 (239)
T cd04246 148 RGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMAS-------LGAKVLHPRSVELAKKY 220 (239)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHh-------CCCcccCHHHHHHHHHC
Confidence 45899999999999999999999999999999998 79999999999999988752 25577889999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+++|+ .||+|+
T Consensus 221 gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 221 NVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred CCeEEEecCCCCC----------CCcEeC
Confidence 9999999998872 599884
No 48
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.57 E-value=7.6e-15 Score=145.20 Aligned_cols=111 Identities=29% Similarity=0.403 Sum_probs=95.5
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.+++.++ ..+..+.|+|++|+.+|..|+||+|+|+|||||||++ +++|++++..|+.+
T Consensus 135 ~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~------~~~i~~i~~~e~~~ 208 (257)
T cd04251 135 SDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD------GRVIERITVSDAES 208 (257)
T ss_pred HHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC------CcccCccCHHHHHH
Confidence 455666666642 2344568999999999999999999999999999973 78999999988887
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
+. .+.+|||.+|+++|..++++|+ +++|++|+.|+.+.+++.|+ ||.|
T Consensus 209 l~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 209 LL-----EKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNGG--GTVI 257 (257)
T ss_pred HH-----hhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC--CcCC
Confidence 75 2489999999999999999999 89999999999999999875 9976
No 49
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.57 E-value=1.1e-14 Score=145.76 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=97.0
Q ss_pred HHhHHHHHHHHhc-----------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIFQ-----------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~~-----------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.++++++. ++....+.|++|+.+|..++|++|+|+|||||||++ ++++|++++..++++
T Consensus 151 ~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~-----~~~~i~~i~~~e~~~ 225 (280)
T cd04237 151 ADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD-----DGELIRELTAQEAEA 225 (280)
T ss_pred HHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC-----CCCccccCCHHHHHH
Confidence 4445666666531 122346899999999999999999999999999974 478999999988888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
+... ....+|||.+|+++|..+++.|+ +++|++|+.|+. +.++|+.++.||+|
T Consensus 226 l~~~--~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 226 LLET--GALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHc--CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 7632 12249999999999999999999 999999999988 77899999999986
No 50
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=99.57 E-value=1.4e-14 Score=151.75 Aligned_cols=193 Identities=31% Similarity=0.428 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhccccccccccCC--------
Q psy11677 155 NVNLKMEILVNSATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDASA-------- 206 (462)
Q Consensus 155 ~AK~As~~L~~iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~~d-------- 206 (462)
....-.+.|..+|+.|+++.++|...|..|++. ++.+++.++ ..+...+
T Consensus 12 ~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~~ev~~~~~~~~---~~a~~a~~~g~~~~~ 88 (398)
T TIGR00407 12 STAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTEGRLKGIADGVK---DVIELADPVGKVIDG 88 (398)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHH---HHhcCCCCCcccccc
Confidence 333444556669999999999998888777654 334444444 3331110
Q ss_pred ---------CCCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHhh----cCCC----CeE
Q psy11677 207 ---------QSGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTKM----LPRY----PLH 252 (462)
Q Consensus 207 ---------~~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~a----l~~~----~~v 252 (462)
...+.|+|||++|++-. |+.+.. +.+-+|+ ..|++. |.++ +++
T Consensus 89 ~~~~~~~~~~~~~~PlGVV~~I~pw~--p~~~~~~~~~ALaaGN~vVlKps~~tp~~~-~~l~~~~~~al~eaGlP~gvv 165 (398)
T TIGR00407 89 RELDSGLTLERVRVPLGVLGVIYEAR--PNVTVDIASLCLKTGNAVILRGGKEAVRSN-KALVEVIQDALAQTGLPVGAV 165 (398)
T ss_pred eecCCCceEEEEEeCcEEEEEEeCCC--chHHHHHHHHHHHhCCeEEECCChhhHHHH-HHHHHHHHHHHHHcCCChhHE
Confidence 12489999999999886 875333 5666777 777744 5565 999
Q ss_pred Eeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 253 SQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 253 ~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
|+|+ +++.+.++|..+.+||+|.++||..+.+.+.+++ ++||+..+.|++++||++|||+++|++.++.+|.+.
T Consensus 166 ~~v~g~~~~~~~~~l~~~~~v~~v~fTGs~~vg~~~~~~~-~~~~~~e~gGk~p~iV~~dADl~~Aa~~iv~~~~~~--- 241 (398)
T TIGR00407 166 QLIETPSRELVSELLDLDEYIDLLIPRGGNGLVRLIKQTS-TIPVLGHGDGICHIYLDESADLIKAIKVIVNAKTQR--- 241 (398)
T ss_pred EEecCCCHHHHHHHHhCCCCeeEEEecCCHHHHHHHHHhC-CCCEEEecCCcceEEEeCCCCHHHHHHHHHhhhcCC---
Confidence 9998 4778999999999999999999999999998877 489999999999999999999999999999999853
Q ss_pred CCchhHHHHHHhhhcccccccChhhHHHH
Q psy11677 331 NPEDRAKAIYNLADQGEMDVSGLPCLLLF 359 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (462)
...|.++..+..++.|.-.+.+.+.+.
T Consensus 242 --GQ~C~a~~rv~V~~~v~d~f~~~l~~~ 268 (398)
T TIGR00407 242 --PSTCNAIETLLVNKAIAREFLPVLENQ 268 (398)
T ss_pred --CCcccccceEEEeHHHHHHHHHHHHHH
Confidence 357888888888877765555544433
No 51
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.56 E-value=9.4e-15 Score=142.71 Aligned_cols=91 Identities=25% Similarity=0.277 Sum_probs=81.3
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|+||++|+.+|..++||.|+++|||||||++||+ +|++++|+++++.|+.++.. .|.+..|..|+..+.++
T Consensus 148 rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~-------~G~~~~~~~a~~~~~~~ 220 (239)
T cd04261 148 RGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMAS-------LGAKVLHPRSVELAKKY 220 (239)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHh-------ccccccCHHHHHHHHHc
Confidence 34899999999999999999999999999999998 79999999999999988752 25567888999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+.+|+ .||+|.
T Consensus 221 ~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 221 GVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred CCeEEEecCCCCC----------CCcEeC
Confidence 9999999998882 599884
No 52
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.56 E-value=1.4e-14 Score=147.20 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=88.1
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV 111 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv 111 (462)
+|.|..|+.+|..|+||+|||||||+|||.++| +|++++|++++..|++++... .....|||.+|+++|..+++.|+
T Consensus 214 InaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~-~~~~~li~~lt~~e~~~li~~--g~i~~GgM~pKl~aA~~al~~Gv 290 (316)
T PRK12352 214 IDKDLSTALLAREIHADILVITTGVEKVCIHFG-KPQQQALDRVDIATMTRYMQE--GHFPPGSMLPKIIASLTFLEQGG 290 (316)
T ss_pred ecHHHHHHHHHHHhCCCEEEEEeCchhhccCCC-CCCcccccccCHHHHHHHHhc--CCcCCCCCHHHHHHHHHHHHhCC
Confidence 569999999999999999999999999998754 467889999999999888631 23457999999999999999998
Q ss_pred -eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 112 -SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 112 -~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
++||++ ++.+.++|+|+ .||+|..
T Consensus 291 ~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 291 KEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred CeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 899996 77799999998 8999863
No 53
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.54 E-value=1.6e-14 Score=140.27 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=92.4
Q ss_pred hhhhHHHhHHHHHHH-Hh---c---------CC---ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcc
Q psy11677 9 CEQHFLTNFNELFRS-IF---Q---------KL---ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKM 71 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~-~~---~---------~e---i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~Akl 71 (462)
......+.++++++. +. . ++ +.+|++|++|+.+|..++||.|+++|||||||++||+ +|++++
T Consensus 97 ~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~ 176 (227)
T cd04234 97 IIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARL 176 (227)
T ss_pred HHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceE
Confidence 444556667777777 41 1 11 2346899999999999999999999999999999998 799999
Q ss_pred cccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 72 IWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 72 I~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|+++++.|+.++.. .|.++| +..|+..+.++|++++|.|+.+|+ ..||+|.
T Consensus 177 i~~i~~~e~~~l~~-----~G~~~~--~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 177 IPEISYDEALELAY-----FGAKVL--HPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred cCcCCHHHHHHHHh-----CCcccc--CHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 99999999988752 346666 467999999999999999999885 3599874
No 54
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.53 E-value=3.3e-14 Score=137.58 Aligned_cols=103 Identities=32% Similarity=0.397 Sum_probs=88.2
Q ss_pred HHHhHHHHHHHHh------------cCCc---cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccccc
Q psy11677 13 FLTNFNELFRSIF------------QKLI---SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYT 76 (462)
Q Consensus 13 ~~~~~~e~~~~~~------------~~ei---~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~ 76 (462)
..+.++++++.+. .+++ ..+++|++|+.+|..++|++|+|+|||||||+.||+ +|++++|++++
T Consensus 123 ~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~ 202 (242)
T PF00696_consen 123 DKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELS 202 (242)
T ss_dssp HHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEE
T ss_pred HHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEee
Confidence 3566777777551 2233 678999999999999999999999999999999998 79999999999
Q ss_pred HHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc-CCeEEEEe
Q psy11677 77 SEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR-GVSVVICN 117 (462)
Q Consensus 77 ~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~-Gv~v~I~s 117 (462)
+.|+.++.. .+.+++|||..|+.+|..+++. +++|+|+|
T Consensus 203 ~~e~~~l~~--~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 203 YDEAEELAS--KSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp HHHHHHHHH--HTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999998763 4568999999999999998888 55999986
No 55
>PRK09411 carbamate kinase; Reviewed
Probab=99.52 E-value=3.7e-14 Score=142.27 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=84.9
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
-++|+|.+|+.+|..++||+|+|+|||||||++ |.+|++++|++++..++..+.. .+|||.+|+++|..+.+.
T Consensus 198 ~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n-~~~p~~~~I~~it~~e~~~~~~------~~GgM~pKVeAA~~~v~~ 270 (297)
T PRK09411 198 AVIDKDLAAALLAEQINADGLVILTDADAVYEN-WGTPQQRAIRHATPDELAPFAK------ADGAMGPKVTAVSGYVRS 270 (297)
T ss_pred EecCHHHHHHHHHHHhCCCEEEEEeCchhhccC-CCCCCCcCCCCcCHHHHHHhcc------CCCCcHHHHHHHHHHHHh
Confidence 378999999999999999999999999999985 4578899999999999877642 589999999999887776
Q ss_pred -CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 -GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 -Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 271 ~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 271 RGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred CCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 55888864 66788999998 799985
No 56
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.46 E-value=2.9e-13 Score=142.90 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=98.0
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.++++++ ..++...|.|++|+.+|.+|+|++|||+|||+|||++ ++++|++++..++++
T Consensus 150 ~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~-----~g~~i~~i~~~~~~~ 224 (429)
T TIGR01890 150 TEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP-----DGTLAAELSPQEVES 224 (429)
T ss_pred HHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC-----CCCCcccCCHHHHHH
Confidence 445566666652 2345668999999999999999999999999999974 478999999988887
Q ss_pred hhhcCCCCCCCCc-chHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGG-MDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGG-M~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~ 141 (462)
+... ..|| |.+|+++|..|++.|+ +++|++|+.|+. +.++|+.++.||+|..+.
T Consensus 225 l~~~-----~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 225 LAER-----LGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHh-----ccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 7632 2345 5999999999999998 899999999998 667889999999998765
No 57
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.45 E-value=2.4e-13 Score=132.06 Aligned_cols=95 Identities=32% Similarity=0.344 Sum_probs=80.0
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.++ ..++.+.|+|++|+.+|..++||+|+|+|||||||++|| +++|++++..|+.+
T Consensus 125 ~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~----~~~i~~i~~~e~~~ 200 (231)
T TIGR00761 125 KALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDG----QSLISEIPLEEIEQ 200 (231)
T ss_pred HHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCC----CeeccccCHHHHHH
Confidence 566777777641 335677899999999999999999999999999999875 47999999988888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEE
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVI 115 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I 115 (462)
+.. ..++||||.+|+++|..+++.|+ ++||
T Consensus 201 l~~---~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 201 LIE---QGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred HHH---cCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 763 34689999999999999999999 5654
No 58
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.45 E-value=4.3e-13 Score=132.08 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHH-hH
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MR 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~-e~ 80 (462)
..+.++.+++.++ ..++...|.|++|+.+|..|+|++|+|+|||+|||++ ++++|++++.. +.
T Consensus 119 ~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~-----~g~~i~~i~~~~~~ 193 (248)
T cd04252 119 NKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDG-----TGKKISAINLDEEY 193 (248)
T ss_pred CHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCC-----CCCcccccCHHHHH
Confidence 3455667777762 2334568999999999999999999999999999975 47899999874 56
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHc--CC-eEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDR--GV-SVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~--Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
+++.. +.+.||||.+|++++..+.+. ++ .++|++ ++. +.++|+.++.||+|
T Consensus 194 ~~l~~---~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 194 DDLMK---QPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred HHHHH---cCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCCccC
Confidence 56652 347899999999999888887 44 788887 355 67789988999986
No 59
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.44 E-value=2.2e-13 Score=137.44 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=83.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|+||..|+.+|..++||.++++|||||||++||+ .|++++|+++++.|+.++.. .|++..+.+++..+.++
T Consensus 203 rggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~-------~Ga~v~h~~a~~~a~~~ 275 (295)
T cd04259 203 RGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIAT-------MGAKVLHPRCIPPARRA 275 (295)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHH-------cCCcccCHHHHHHHHHC
Confidence 37999999999999999999999999999999998 79999999999999988852 46677888899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+.+|+ ..||+|.
T Consensus 276 ~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 276 NIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred CCCEEEEeCCCCC---------CCCcEeC
Confidence 9999999999884 5699884
No 60
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.43 E-value=3.4e-13 Score=132.39 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=78.2
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|++|++|+.+|..|+|+.|+++|||||||++||+ +|++++|++++++|+.++... |--..|..|+..+.+.
T Consensus 153 rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~-------g~~v~~~~a~~~~~~~ 225 (244)
T cd04260 153 RGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ-------GAKVIHPRAVEIAMQA 225 (244)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc-------CchhcCHHHHHHHHHc
Confidence 45899999999999999999999999999999998 789999999999999887621 1123567888999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+++|. .||+|.
T Consensus 226 ~i~v~I~~~~~~~----------~gt~i~ 244 (244)
T cd04260 226 NIPIRIRSTMSEN----------PGTLIT 244 (244)
T ss_pred CCeEEEecCCCCC----------CCCEeC
Confidence 9999999998762 589874
No 61
>PRK05925 aspartate kinase; Provisional
Probab=99.43 E-value=2.6e-13 Score=143.85 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=84.3
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|+||+.|+++|..++||.++++|||||||++||+ +|+|++|++++++|+.+++. .++..++++| ...+.+
T Consensus 186 grGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~-~Ga~vl~~~~------~~~a~~ 258 (440)
T PRK05925 186 GRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLAS-FGAKVLHPPM------LKPCVR 258 (440)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHh-CCCCcCCHHH------HHHHHH
Confidence 469999999999999999999999999999999998 89999999999999988763 3566777776 467889
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
+|++++|.|+++|+ ..||+|.+..
T Consensus 259 ~~Ipi~I~~~~~p~---------~~GT~i~~~~ 282 (440)
T PRK05925 259 AGIPIFVTSTFDVT---------KGGTWIYASD 282 (440)
T ss_pred CCCcEEEecCCCCC---------CCccEEecCC
Confidence 99999999999886 4699998643
No 62
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=99.41 E-value=1.4e-12 Score=136.87 Aligned_cols=187 Identities=25% Similarity=0.403 Sum_probs=140.0
Q ss_pred HHHHHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhcc--------cccccccc--CC----CC
Q psy11677 163 LVNSATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRK--------IGTFFTDA--SA----QS 208 (462)
Q Consensus 163 L~~iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~--------i~t~~a~~--~d----~~ 208 (462)
|..+++.|.++.++|..++..|+.+ ++.+++.++ +|+.+... +. ..
T Consensus 26 L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ 105 (406)
T cd07079 26 LLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGLRQVAALPDPVGEVLRGWTLPNGLQIEK 105 (406)
T ss_pred HHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHHHHHHhcCCCCcccccceeccCccceeE
Confidence 3338999999999999998655421 444455444 11111110 10 12
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHh----hcCCC----CeEEeec--CHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTK----MLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~----al~~~----~~v~~v~--~r~~~ 261 (462)
++.|+|||++|+... |+.+.. ..+-.|+ ..+++ +|.++ +++|+|+ +++.+
T Consensus 106 ~~~PlGVV~~I~p~~--p~~~~~~~~~ALaaGN~vVlKps~~tp~~~-~~l~~~~~~~l~~aG~P~gvv~~v~g~~~~~~ 182 (406)
T cd07079 106 VRVPLGVIGIIYESR--PNVTVDAAALCLKSGNAVILRGGSEALHSN-RALVEIIQEALEEAGLPEDAVQLIPDTDREAV 182 (406)
T ss_pred EecceEEEEEecCCC--cchHHHHHHHHHHhCCEEEEeCCchhhhHH-HHHHHHHHHHHHHcCCCcccEEEecCCChHHH
Confidence 489999999999755 764322 5556666 66664 44455 9999998 46788
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.++|..+..||+|...||....+.|.+.+ .+||+....|+++++|++|||+++|++-++.+|..+.| .|.+++.
T Consensus 183 ~~~l~~~~~v~~i~fTGS~~~G~~i~~~a-~~pv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~G-----~C~a~~r 256 (406)
T cd07079 183 QELLKLDDYIDLIIPRGGAGLIRFVVENA-TIPVIKHGDGNCHVYVDESADLEMAVRIVVNAKTQRPS-----VCNALET 256 (406)
T ss_pred HHHHcCCCCccEEEeCCCHHHHHHHHHhc-CCCEEeecCCcceEEEeCCCCHHHHHHHHHHcccCCCc-----cccccee
Confidence 99999999999999999999999999988 59999999999999999999999999999999988655 4888888
Q ss_pred hhhcccccccChhhHHH
Q psy11677 342 LADQGEMDVSGLPCLLL 358 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (462)
+..|+.|...+...|.+
T Consensus 257 v~V~~si~d~f~~~l~~ 273 (406)
T cd07079 257 LLVHRDIAEEFLPKLAE 273 (406)
T ss_pred EEEeHHHHHHHHHHHHH
Confidence 87777775555555444
No 63
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.38 E-value=1.2e-12 Score=130.54 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=88.0
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccH-HhHHhhhhcCCCCCCCCcc---hHHHHHH
Q psy11677 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS-EMRDTVQFGQKSKVGTGGM---DSKVNSA 103 (462)
Q Consensus 28 ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~-~e~~~l~~~~~s~~gtGGM---~~Kl~AA 103 (462)
++...+.|++|+.+|..|+|++|||+||++|||++ ++++|++++. .|...+. ....++||| .+|++++
T Consensus 168 ~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~-----~g~lI~~l~~~~e~~~li---~~g~i~gGm~~ki~ki~~~ 239 (271)
T cd04236 168 RSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ-----KHKVLPQVHLPADLPSLS---DAEWLSETEQNRIQDIATL 239 (271)
T ss_pred CEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC-----CCCCccccCcHHHHHHHH---hCCEEcCCeeechHHHHHH
Confidence 45568899999999999999999999999999974 4789999995 8888775 456889999 9999999
Q ss_pred HHHHHcCCeEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 104 TWALDRGVSVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
..++.+|++|+|++ |+. +.++|+..+.||+|
T Consensus 240 l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 240 LNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred HHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 99999999999998 555 88999999999987
No 64
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.38 E-value=9.2e-13 Score=133.19 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=82.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|++|+.|+.+|..++|+.++++|||||||+.||+ +|++++|+++++.|+.++.. .|++..+..+...+.++
T Consensus 206 RggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~-------~Ga~vlhp~ai~~a~~~ 278 (298)
T cd04244 206 RGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAY-------FGAKVLHPRTVEPAMEK 278 (298)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHh-------CCCcccCHHHHHHHHHc
Confidence 36899999999999999999999999999999998 79999999999999998852 35667777899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+++|+ ..||+|.
T Consensus 279 ~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 279 GIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999884 5699884
No 65
>PRK08841 aspartate kinase; Validated
Probab=99.38 E-value=1e-12 Score=137.53 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=81.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|++|+.|+.+|..++||.|+++|||||||++||+ .|+|++|+++++.|+.+++. .|.+..+..++..+.++
T Consensus 150 rggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~-------~Ga~vlhp~ai~~a~~~ 222 (392)
T PRK08841 150 RGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMAR-------KGAKVLHLPSVQHAWKH 222 (392)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHh-------cCccccCHHHHHHHHHC
Confidence 46899999999999999999999999999999998 89999999999999988852 25556677899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|++++|.|+..+ ..||+|..
T Consensus 223 ~Ipi~i~n~~~~----------~~GT~I~~ 242 (392)
T PRK08841 223 SVPLRVLSSFEV----------GEGTLIKG 242 (392)
T ss_pred CCeEEEEecCCC----------CCCeEEEe
Confidence 999999998765 35999964
No 66
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=99.38 E-value=2.8e-12 Score=135.06 Aligned_cols=180 Identities=25% Similarity=0.412 Sum_probs=137.9
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhcccccccccc-------------CC----CC
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDA-------------SA----QS 208 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~-------------~d----~~ 208 (462)
+++.|.++.++|..++..|+++ ++.+++.++ ..+.+ +. ..
T Consensus 35 ~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~~~~~~~---~~a~~~~~~g~~~~~~~~~~~~~~~~ 111 (417)
T PRK00197 35 IADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEGIAEGLR---QVAALPDPVGEVLDGWTLPNGLRIGR 111 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHHH---HHhhcCCCccccccceecCCCceEEE
Confidence 8899999999998888766422 344545444 33221 11 12
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC----CeEEeec--CHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~~~ 261 (462)
.+.|+|||++|+... |+.+.. +.+-.|+ ..++ ++|.++ +++|+|+ +.+.+
T Consensus 112 ~~~PlGVv~~I~p~p--~~~~~~~~~~ALaaGN~vVlKPs~~tp~t~-~~l~~l~~~~l~~aGlP~gv~~~v~g~~~~~~ 188 (417)
T PRK00197 112 VRVPLGVIGVIYESR--PNVTVDAAALCLKSGNAVILRGGSEAIHSN-RALVAVIQEALEEAGLPADAVQLVETTDRAAV 188 (417)
T ss_pred EecCceEEEEEcCCC--chHHHHHHHHHHHhCCeEEEecChhhhHHH-HHHHHHHHHHHHHcCcChhhEEEecCCChHHH
Confidence 478999999999754 764322 4455666 6655 445665 8999998 47889
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.++|..+..||.|...||....+.|.+++ ..||+....|++++||++|||+++|++-++.+|.++.|+ |.+...
T Consensus 189 ~~~l~~~~~v~~V~fTGS~~~g~~i~~~a-~~~~~lELGGk~p~IV~~dAdl~~Aa~~iv~~~~~n~G~-----C~a~~r 262 (417)
T PRK00197 189 GELLKLDGYVDVIIPRGGAGLIRRVVENA-TVPVIEHGDGICHIYVDESADLDKALKIVLNAKTQRPSV-----CNALET 262 (417)
T ss_pred HHHhccCCCccEEEecCCHHHHHHHHHhc-CCCEEeecCCcceEEEeCCCCHHHHHHHHHHhccCCCcc-----cccceE
Confidence 99999999999999999999999999988 599999999999999999999999999999999997765 777777
Q ss_pred hhhcccccccChhhHH
Q psy11677 342 LADQGEMDVSGLPCLL 357 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~ 357 (462)
+..|..|...+.+.|.
T Consensus 263 v~V~~~i~d~f~~~l~ 278 (417)
T PRK00197 263 LLVHEAIAEEFLPKLA 278 (417)
T ss_pred EEEEHHHhHHHHHHHH
Confidence 7777776555555443
No 67
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.37 E-value=1.6e-12 Score=131.15 Aligned_cols=91 Identities=23% Similarity=0.388 Sum_probs=78.4
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+||+.|+.+|..++||.++++|||||||++||+ +|++++|+++++.|+.++.. .|..-|.++ +...+.++|
T Consensus 202 ggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~-----~Gakvl~p~--ai~~a~~~~ 274 (293)
T cd04243 202 GGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAY-----FGAKVLHPR--TIQPAIRKN 274 (293)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHh-----CCCcccCHH--HHHHHHHCC
Confidence 6789999999999999999999999999999998 89999999999999988752 233344543 667889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++++|.|+.+|+ ..||+|.
T Consensus 275 i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 275 IPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred CcEEEecCCCCC---------CCCCEeC
Confidence 999999999884 5699884
No 68
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.37 E-value=4e-12 Score=130.00 Aligned_cols=92 Identities=25% Similarity=0.323 Sum_probs=80.5
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcch-HHHHHHHHHHHc
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMD-SKVNSATWALDR 109 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~-~Kl~AA~~a~~~ 109 (462)
|+||+.|+.+|..++|+.++++|||||||++||+ .|++++|+++++.|+.+++ ..||. .+..++..+.++
T Consensus 179 GgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela--------~~Gakvlhp~a~~~a~~~ 250 (327)
T TIGR02078 179 GGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAA--------KLGMKALQWKAADLAKEY 250 (327)
T ss_pred CChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHH--------HCCchhhHHHHHHHHHHC
Confidence 4789999999999999999999999999999998 8999999999999987664 24674 678899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
|++++|.|.+.| ..||+|....
T Consensus 251 ~Ipi~I~~t~~~----------~~GT~I~~~~ 272 (327)
T TIGR02078 251 KIPVLFGRTRDW----------RMGTLISNRS 272 (327)
T ss_pred CCeEEEEeCCCc----------CCCcEEecCC
Confidence 999999998766 2599997543
No 69
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.36 E-value=2.8e-12 Score=122.86 Aligned_cols=90 Identities=27% Similarity=0.387 Sum_probs=74.7
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++++|++|+++|..++|++|+++|||||||++ ++++|++++..++.. .+.|.. .+++.+.++|
T Consensus 113 ~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~-----da~~i~~i~~~e~~~----------~~~id~--~~~~~~~~~g 175 (203)
T cd04240 113 EVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEK-----DGKLVNEIAAAELLG----------ETSVDP--AFPRLLTKYG 175 (203)
T ss_pred ccCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCcCccccCHHHhCC----------CCeehh--hHHHHHHhCC
Confidence 47999999999999999999999999999986 389999999876532 122211 2344567889
Q ss_pred CeEEEEeCCChhHHHHHHcCC-cccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGR-KIGTFF 137 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~-~~GT~I 137 (462)
++++|++|+.|+.|.+++.|+ ..||+|
T Consensus 176 i~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 176 IRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 999999999999999999998 789986
No 70
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.34 E-value=3.4e-12 Score=128.84 Aligned_cols=91 Identities=23% Similarity=0.368 Sum_probs=77.3
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|.+|+++|..++||.++++|||||||++||+ +|+|++|+++++.|+.++. ..|+.-+.++ +...+.++|
T Consensus 203 GGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~-----~~Gakv~h~~--~~~~a~~~~ 275 (294)
T cd04257 203 NGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELS-----YFGAKVLHPK--TIQPVAKKN 275 (294)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHH-----hCCCcccCHH--HHHHHHHCC
Confidence 6789999999999999999999999999999998 8999999999999998875 2333334443 555889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++++|.|+.+|+ ..||+|.
T Consensus 276 Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 276 IPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred CCEEEeeCCCCC---------CCCCEeC
Confidence 999999999884 5699884
No 71
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=99.33 E-value=4.9e-12 Score=135.11 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=109.0
Q ss_pred CCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHh----hcCCC----CeEEeec--CHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTK----MLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~----al~~~----~~v~~v~--~r~~~ 261 (462)
+.|+||+++|++.- .|-.+ +.+++-+|+ ..+++ +|.++ +++++|+ +++..
T Consensus 127 ~~P~GVV~~I~PwN-~P~~~~~~~ia~ALaaGN~VVlKps~~tp~t~-~~l~~ll~~~l~eaGlP~gvv~vv~g~~~~~~ 204 (465)
T PRK15398 127 YAPFGVIGAVTPST-NPTETIINNAISMLAAGNSVVFSPHPGAKKVS-LRAIELLNEAIVAAGGPENLVVTVAEPTIETA 204 (465)
T ss_pred ecccEEEEEeeCCC-CchHHHHHHHHHHHHhCCcEEEECCccchHHH-HHHHHHHHHHHHHcCCCCCeEEEecCCCHHHH
Confidence 58999999999863 25321 117777888 77774 44444 9999997 57777
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
..|++..+ ||.|+++||....+.|.+ + ..|++..+.|+||+||++|||+++|++.++++|..+ ....|.+.+.
T Consensus 205 ~~L~~~~~-vd~I~fTGS~~~G~~v~~-~-~k~~~~elGGk~p~IV~~dADld~Aa~~i~~g~~~n----~GQ~C~A~~r 277 (465)
T PRK15398 205 QRLMKHPG-IALLVVTGGPAVVKAAMK-S-GKKAIGAGAGNPPVVVDETADIEKAARDIVKGASFD----NNLPCIAEKE 277 (465)
T ss_pred HHHHcCCC-ccEEEeeCCHHHHHHHHH-c-CCceeeecCCCceEEEecCCCHHHHHHHHHHhcccC----CCCcCCCCce
Confidence 77887654 999999999999999999 4 599999999999999999999999999999999875 4457887777
Q ss_pred hhhcccccccChhhH
Q psy11677 342 LADQGEMDVSGLPCL 356 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (462)
+..++.|...+.+.+
T Consensus 278 vlV~~si~d~f~~~l 292 (465)
T PRK15398 278 VIVVDSVADELMRLM 292 (465)
T ss_pred EEEeHHHHHHHHHHH
Confidence 777776654443333
No 72
>PRK07431 aspartate kinase; Provisional
Probab=99.33 E-value=3.6e-12 Score=139.64 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=82.6
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|++|+.|+.+|..++||.|+++|||||||++||+ .|++++|+++++.|+.++. ..|.++|. ..++..+.++
T Consensus 152 rggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~-----~~G~~v~~--~~a~~~~~~~ 224 (587)
T PRK07431 152 RGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELA-----SLGASVLH--PRAVEIARNY 224 (587)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHH-----hCCCceEh--HHHHHHHHHc
Confidence 45689999999999999999999999999999998 7999999999999998885 25678887 5699999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
|++++|.|+.. +..||+|.++..
T Consensus 225 ~i~i~i~~~~~----------~~~GT~i~~~~~ 247 (587)
T PRK07431 225 GVPLVVRSSWS----------DAPGTLVTSPPP 247 (587)
T ss_pred CCcEEEecCCC----------CCCCeEEEeCCc
Confidence 99999999872 235999986543
No 73
>PRK06635 aspartate kinase; Reviewed
Probab=99.33 E-value=3.5e-12 Score=133.44 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=81.5
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|++|++|+.+|..++||.|+++|||||||++||+ +|++++|+++++.|+.++.. .|.+..+..++..+.+
T Consensus 149 ~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~-------~g~~~~~~~a~~~~~~ 221 (404)
T PRK06635 149 GRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELAS-------LGAKVLHPRSVEYAKK 221 (404)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHH-------cCCcccCHHHHHHHHH
Confidence 346899999999999999999999999999999998 79999999999999988852 2445677789999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
.|++++|.|++.+ ..||+|...
T Consensus 222 ~~i~~~i~~~~~~----------~~gT~i~~~ 243 (404)
T PRK06635 222 YNVPLRVRSSFSD----------NPGTLITGE 243 (404)
T ss_pred cCceEEEEcCCCC----------CCCCEEeeC
Confidence 9999999998754 359999754
No 74
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.33 E-value=8.5e-12 Score=125.86 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=79.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|+||..|+.+|..++|+.++++|||||||+.||+ +|++++|+++++.|+.+++. .|..-|.++ +...+.+.
T Consensus 200 rggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~-----~Gakvlhp~--a~~~~~~~ 272 (292)
T cd04258 200 RGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT-----FGAKVLHPA--TLLPAIRK 272 (292)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH-----CCCcccCHH--HHHHHHHc
Confidence 48899999999999999999999999999999998 89999999999999998852 333445554 67788999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+++++|.|..+|+ ..||+|.
T Consensus 273 ~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 273 NIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred CCcEEEEeCCCCC---------CCCceeC
Confidence 9999999998874 5699884
No 75
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=99.33 E-value=9.4e-12 Score=131.67 Aligned_cols=162 Identities=21% Similarity=0.179 Sum_probs=121.2
Q ss_pred CCCceeeEEEEeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~~~ 261 (462)
+.|+|||++|++.- .|-.+.- .++-+|+ ..++ +++.++ +++|+|+ +++..
T Consensus 95 ~~PlGVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKpse~tp~t~-~~l~~l~~~~~~~aGlP~gvv~~v~g~~~~~~ 172 (429)
T cd07121 95 YAPFGVIGAITPST-NPTETIINNSISMLAAGNAVVFNPHPGAKKVS-AYAVELINKAIAEAGGPDNLVVTVEEPTIETT 172 (429)
T ss_pred EcccceEEEEccCC-CchhHHHHHHHHHHHcCCCEEEECCccchhHH-HHHHHHHHHHHHHcCCCcceEEEecCCChHHH
Confidence 68999999999763 3642111 7777888 7776 444554 9999998 47777
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
..|++.++ ||.|.++||....+.|.++ ..|++..+.|++++||++|||+++|++.++.++..+ ....|.+.+.
T Consensus 173 ~~L~~~~~-v~~I~fTGs~~~g~~v~~~--~k~~~lelGGk~p~iV~~dADld~Aa~~i~~~~~~n----~GQ~C~a~~r 245 (429)
T cd07121 173 NELMAHPD-INLLVVTGGPAVVKAALSS--GKKAIGAGAGNPPVVVDETADIEKAARDIVQGASFD----NNLPCIAEKE 245 (429)
T ss_pred HHHHcCCC-ccEEEeeCCHHHHHHHHhC--CCceEeecCCCceEEEecCCCHHHHHHHHHhccccc----CCCCCCccce
Confidence 78887664 9999999999999999987 489999999999999999999999999999988774 4557777777
Q ss_pred hhhcccccccChhhHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11677 342 LADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLL 396 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L 396 (462)
+..++.|. .+.+.+|.+.+.+ ..+.++.++++..+.+..
T Consensus 246 v~V~~~i~---d~f~~~L~~~~~~-------------~i~~~~~~~v~~~i~~a~ 284 (429)
T cd07121 246 VIAVDSVA---DYLIAAMQRNGAY-------------VLNDEQAEQLLEVVLLTN 284 (429)
T ss_pred EEEeHHHH---HHHHHHHHHCCCE-------------EcCHHHHHHHHHhhcccC
Confidence 77766664 3444445544321 355666666655554443
No 76
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.32 E-value=3.6e-12 Score=133.24 Aligned_cols=92 Identities=29% Similarity=0.348 Sum_probs=80.8
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++|+.|+++|||||||++||+ +|++++|+++++.|+.++.. .|....+.+++..|.+++
T Consensus 152 g~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~-------~G~~v~~~~a~~~a~~~~ 224 (401)
T TIGR00656 152 GGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELAT-------FGAKVLHPRTVEPAMRSG 224 (401)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHH-------cCCcccCHHHHHHHHHCC
Confidence 5789999999999999999999999999999998 79999999999999998862 133455667999999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|+.+|+ .||+|.+.
T Consensus 225 i~i~i~~~~~~~----------~gT~I~~~ 244 (401)
T TIGR00656 225 VPIEVRSSFDPE----------EGTLITNS 244 (401)
T ss_pred CeEEEEECCCCC----------CCeEEEeC
Confidence 999999999883 49999754
No 77
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=99.31 E-value=1.1e-11 Score=129.46 Aligned_cols=190 Identities=21% Similarity=0.139 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhCCchhhcCchhcHHH-------------------HHHHHhhcccccccccc---------CC----C
Q psy11677 160 MEILVNSATWALDRGVSVVICNGMQKEA-------------------IKQIVAGRKIGTFFTDA---------SA----Q 207 (462)
Q Consensus 160 s~~L~~iA~aL~~~~~~IL~AN~~D~~~-------------------~~~~~~~~~i~t~~a~~---------~d----~ 207 (462)
...|..+++.|.++.+++.+++..|.-+ +..+++.++ ..+.. ++ .
T Consensus 19 ~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~~~~~~~~~~~~~~~ev~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~ 95 (397)
T cd07077 19 DLIINAIANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESKLYKNIDTER---GITASVGHIQDVLLPDNGETY 95 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHhCCcHHHHHHHHHHHH---HHHHhcCcccceEecCCCceE
Confidence 3344558888889999998888887762 444454444 33211 11 1
Q ss_pred CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC---CeEEeec--CHHHH
Q psy11677 208 SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY---PLHSQVS--TREEI 261 (462)
Q Consensus 208 ~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~---~~v~~v~--~r~~~ 261 (462)
..+.|+||+++|++.. .|-.... +++-.|+ ..+. +++... +++++++ +++..
T Consensus 96 ~~~~P~Gvv~~i~p~N-~P~~~~~~~~~aL~aGN~vilKps~~~p~~~-~~l~~~~~~~~~~g~p~~~v~~v~~~~~~~~ 173 (397)
T cd07077 96 VRAFPIGVTMHILPST-NPLSGITSALRGIATRNQCIFRPHPSAPFTN-RALALLFQAADAAHGPKILVLYVPHPSDELA 173 (397)
T ss_pred EEEecceEEEEEeCCC-CchHHHHHHHHHHHcCCcEEEEcCcchhhHH-HHHHHHHHHHhhcCCCCceEEEecCCCHHHH
Confidence 2589999999999877 3432111 5666777 7766 333322 8999997 56667
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
..|++..+ ||+|+.+||...++.+.+++..+|++.++.|++++|||++||+++|++.+++++..+ |= .|.+...
T Consensus 174 ~~l~~~~~-vd~v~ftGs~~~~~~v~~~~~~~~~~~~~gg~~~~iv~~dad~~~a~~~~~~~~~~~-GQ----~C~a~~~ 247 (397)
T cd07077 174 EELLSHPK-IDLIVATGGRDAVDAAVKHSPHIPVIGFGAGNSPVVVDETADEERASGSVHDSKFFD-QN----ACASEQN 247 (397)
T ss_pred HHHHcCCC-CCEEEecCCHHHHHHHHHcCCCCceEEecCCcceEEEcCCCCHHHHHHHHHHhhccC-Cc----cCCCCeE
Confidence 77887766 999999999999999999874489999999999999999999999999999999996 54 4666666
Q ss_pred hhhcccccccChhhHHHHH
Q psy11677 342 LADQGEMDVSGLPCLLLFI 360 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~ 360 (462)
+..|+.|...+.+.|.+.+
T Consensus 248 v~V~~~i~d~~~~~l~~~~ 266 (397)
T cd07077 248 LYVVDDVLDPLYEEFKLKL 266 (397)
T ss_pred EEEehhhhHHHHHHHHHHH
Confidence 6666655444444444433
No 78
>PRK06291 aspartate kinase; Provisional
Probab=99.31 E-value=3.9e-12 Score=135.83 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=84.8
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|++|+.|+.+|..++||.++++|||||||++||+ +|++++|+++++.|+.++.. .|.+..+..++..+.+
T Consensus 209 grggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~-------~G~~v~~~~a~~~~~~ 281 (465)
T PRK06291 209 GRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSY-------FGAKVLHPRTIEPAME 281 (465)
T ss_pred cCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHh-------CCCcccCHHHHHHHHH
Confidence 346999999999999999999999999999999998 79999999999999988742 3567788889999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
+|++++|.|+.+|+ ..||+|...
T Consensus 282 ~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 282 KGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred cCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999883 569999754
No 79
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.31 E-value=5.8e-12 Score=126.81 Aligned_cols=91 Identities=27% Similarity=0.325 Sum_probs=80.7
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++|+.+.++|||||||++||+ .|+|+.|+++++.|+.+++ ..|..-|.++ +...+.+++
T Consensus 197 ggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela-----~~GakVlhp~--ai~~a~~~~ 269 (288)
T cd04245 197 GGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELS-----YAGFSVFHDE--ALIPAIEAG 269 (288)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHH-----HCCCcccCHH--HHHHHHHCC
Confidence 5899999999999999999999999999999998 8999999999999999885 2455557776 778899999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++++|.|..+|+ ..||+|.
T Consensus 270 Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 270 IPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CcEEEeeCCCCC---------CCCceeC
Confidence 999999998885 5699874
No 80
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.30 E-value=6.8e-12 Score=127.28 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=81.0
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|..|+++|..++|+.++++|||||||++||+ +|++++|+++++.|+.+++. .|..-++++ +...+.+.+
T Consensus 213 gGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~-----~GakVlHp~--ti~pa~~~~ 285 (306)
T cd04247 213 GYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTY-----YGSEVIHPF--TMEQVIKAR 285 (306)
T ss_pred CchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHh-----CcCcccCHH--HHHHHHHcC
Confidence 7899999999999999999999999999999998 89999999999999998852 333445664 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|+++|.|..+|+ ..||+|.++
T Consensus 286 Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 286 IPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred CcEEEecCCCCC---------CCCcEEcCC
Confidence 999999998874 569999763
No 81
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.30 E-value=1e-11 Score=130.09 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccH-HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS-EMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~-~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
..|.|++|+.+|..|+|++|||+|||+|||+. ++++|++++. .+...+.. +...+|||..|+++|..+++.
T Consensus 147 NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~-----~g~~i~~i~~~~e~~~l~~---~~~vtgGM~~KL~~a~~al~~ 218 (398)
T PRK04531 147 NINADVAANELVSALQPYKIIFLTGTGGLLDA-----DGKLISSINLSTEYDHLMQ---QPWINGGMKLKLEQIKELLDR 218 (398)
T ss_pred EECHHHHHHHHHHHcCCCEEEEEECCCCccCC-----CCCCcccCCHHHHHHHHHh---cCCCCccHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999975 4789999996 45555542 356899999999999999975
Q ss_pred CCeEEEEeCCChhH-HHHHHcCCccccccccCCC
Q psy11677 110 GVSVVICNGMQKEA-IKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 110 Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~~ 142 (462)
..+++++++..|+. +.++|+.++.||+|.....
T Consensus 219 ~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~ 252 (398)
T PRK04531 219 LPLESSVSITSPSDLAKELFTHKGSGTLVRRGER 252 (398)
T ss_pred CCcEEEEEecCCCHHHHHHccCCCCCeEEecCCc
Confidence 45788888888888 5668888889999998765
No 82
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=99.29 E-value=4.5e-12 Score=135.59 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=101.4
Q ss_pred CCCCceeeEEEEe-CCCCcccc-c-----------------ccccccchHHHHH----hhcCCC----CeEEeecCHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTV-P-----------------KKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~-~-----------------~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~ 261 (462)
++.|+||+++|++ .. |..+ . .+++-.|+ ..++ ++|+++ +++|+|+....+
T Consensus 130 ~~~P~GVv~~I~pwN~--P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~al~~~glP~gvv~~v~g~~~~ 206 (478)
T cd07086 130 QWNPLGVVGVITAFNF--PVAVPGWNAAIALVCGNTVVWKPSETTPLTA-IAVTKILAEVLEKNGLPPGVVNLVTGGGDG 206 (478)
T ss_pred EEecceeEEEECCCCc--HHHHHHHHHHHHHHcCCeEEEECCCcchHHH-HHHHHHHHHhhhccCCCccceEEEecCchh
Confidence 4799999999997 55 7521 1 16677777 6666 777766 999999943338
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKA 338 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~ 338 (462)
.++|..+..||+|.++||...-+.|.+.+ .+.++++.| |++++||++|||+++|++.++.+|+.+.|- .|.+
T Consensus 207 ~~~L~~~~~vd~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-G~~p~iV~~dAdl~~Aa~~i~~~~~~~~GQ----~C~a 281 (478)
T cd07086 207 GELLVHDPRVPLVSFTGSTEVGRRVGETVARRFGRVLLELG-GNNAIIVMDDADLDLAVRAVLFAAVGTAGQ----RCTT 281 (478)
T ss_pred HHHHhcCCCCCEEEEECcHHHHHHHHHHHhccCCcEEeecC-CCCcEEEcCCCCHHHHHHHHHHHHHhccCC----CCcC
Confidence 89998889999999999999988876633 125666666 999999999999999999999999998775 3555
Q ss_pred HHHhhhcccc
Q psy11677 339 IYNLADQGEM 348 (462)
Q Consensus 339 ~~~~~~~~~~ 348 (462)
...+..++.|
T Consensus 282 ~~rv~V~~~i 291 (478)
T cd07086 282 TRRLIVHESV 291 (478)
T ss_pred CeEEEEcHHH
Confidence 5555444444
No 83
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.28 E-value=7.8e-12 Score=132.53 Aligned_cols=94 Identities=26% Similarity=0.283 Sum_probs=82.1
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++|+.|+++|||||||++||+ .|++++++++++.|+.++.. .|.+..+..++..+.+.|
T Consensus 191 ggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~-------~G~~v~~~~a~~~~~~~~ 263 (441)
T TIGR00657 191 GGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELAS-------FGAKVLHPRTLEPAMRAK 263 (441)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHh-------cCCcccCHHHHHHHHHcC
Confidence 5799999999999999999999999999999998 79999999999999988852 234556677899999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|+.+|+ ..||+|.+..
T Consensus 264 i~i~i~~~~~~~---------~~GT~I~~~~ 285 (441)
T TIGR00657 264 IPIVVKSTFNPE---------APGTLIVAST 285 (441)
T ss_pred CeEEEecCCCCC---------CCceEEEeCC
Confidence 999999998873 4599998653
No 84
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=99.27 E-value=3.7e-12 Score=135.29 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|...+.. +++.|.++.++|..++..|.-. +...++.++ ..+.+
T Consensus 21 v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~~~~~~~~ 97 (457)
T cd07090 21 VDLAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEEARVDIDSSADCLE---YYAGLAPTL 97 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556666666554333 8888888888888776544322 222323222 11111
Q ss_pred -------CC----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----Ce
Q psy11677 205 -------SA----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 205 -------~d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~ 251 (462)
+. ...+.|+|||++|+..- .|-. + +.+++.+|+ ..+.+.+.++ ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N-~P~~~~~~~~~~ALaaGN~Vv~Kps~~~~~~~-~~l~~~~~~aGlP~g~ 175 (457)
T cd07090 98 SGEHVPLPGGSFAYTRREPLGVCAGIGAWN-YPIQIASWKSAPALACGNAMVYKPSPFTPLTA-LLLAEILTEAGLPDGV 175 (457)
T ss_pred CCeeeccCCCceEEEEEeecceEEEECCCc-cHHHHHHHHHHHHHhcCCeeeecCCCcCcHHH-HHHHHHHHHcCCCccc
Confidence 10 12489999999998211 2321 1 116777787 7777888777 99
Q ss_pred EEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCC
Q psy11677 252 HSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQG 329 (462)
Q Consensus 252 v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~ 329 (462)
+|+|+....+.+.|-.+..||+|.++||...-+.|.+.+. .+|++....|+|++||++|||+++|++.++.++..+-|
T Consensus 176 ~~~v~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dAdl~~Aa~~i~~~~~~~~G 255 (457)
T cd07090 176 FNVVQGGGETGQLLCEHPDVAKVSFTGSVPTGKKVMSAAAKGIKHVTLELGGKSPLIIFDDADLENAVNGAMMANFLSQG 255 (457)
T ss_pred EEEEeCChhhHHHHhcCCCCCEEEEECcHHHHHHHHHHHhccCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCC
Confidence 9999843346666667778999999999998888777652 37999999999999999999999999999999987655
Q ss_pred CCCchhHHHHHHhhhcccc
Q psy11677 330 LNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~ 348 (462)
- .|.+++.+..+..|
T Consensus 256 Q----~C~a~~rv~V~~~i 270 (457)
T cd07090 256 Q----VCSNGTRVFVQRSI 270 (457)
T ss_pred C----CCCCCeEEEEcHHH
Confidence 3 56666666555554
No 85
>PRK08210 aspartate kinase I; Reviewed
Probab=99.26 E-value=1.4e-11 Score=129.16 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=78.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..|+|+.++++|||||||++||+ .|++++|+++++.|+.++... |--..+..++..+.++|
T Consensus 156 g~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~-------G~~v~~~~a~~~~~~~~ 228 (403)
T PRK08210 156 GGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQ-------GAKVIHPRAVEIAMQAN 228 (403)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHC-------CccccCHHHHHHHHHCC
Confidence 5899999999999999999999999999999998 799999999999999888621 11234456888999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|++.+ ..||+|.+..
T Consensus 229 i~i~i~~~~~~----------~~gT~I~~~~ 249 (403)
T PRK08210 229 IPLRIRSTYSD----------SPGTLITSLG 249 (403)
T ss_pred CeEEEEecCCC----------cCCcEEEecC
Confidence 99999998764 2399997653
No 86
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=99.26 E-value=8.2e-12 Score=133.04 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=138.6
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccc
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGT 199 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t 199 (462)
.+.+....|++|.+.+.. +|+.|.++.++|......|.-. ++.++..++
T Consensus 37 ~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~--- 113 (466)
T cd07138 37 DVDRAVAAARRAFPAWSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLGIGHLRAAADALK--- 113 (466)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 356666777777654433 8888888888887766554211 333444333
Q ss_pred cccccCC----CCCCCCceeeEEEEeC-CCCcc-cc-----------------cccccccchHHHHHhhcCCC----CeE
Q psy11677 200 FFTDASA----QSGGTPVEVLAEIWKN-ETLNT-TV-----------------PKKHAKTSQCKYFTKMLPRY----PLH 252 (462)
Q Consensus 200 ~~a~~~d----~~~~~PlGVi~~IyEs-r~~Pn-v~-----------------~~~ea~~sn~~~l~~al~~~----~~v 252 (462)
.+..-.. ...+.|+|||++|++. . |- .+ +.+.+-.|+ ..+.+.+.++ +++
T Consensus 114 ~~~~~~~~~~~~~~~~P~GVv~~I~p~N~--P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~-~~l~~~~~~aGlP~g~v 190 (466)
T cd07138 114 DFEFEERRGNSLVVREPIGVCGLITPWNW--PLNQIVLKVAPALAAGCTVVLKPSEVAPLSA-IILAEILDEAGLPAGVF 190 (466)
T ss_pred hccccccCceEEEEEeecceEEEECCCcc--HHHHHHHHHHHHHhcCCEEEEECCCcCcHHH-HHHHHHHHHcCCCCCcE
Confidence 2211110 1258999999999873 4 72 11 116677777 7777888877 899
Q ss_pred Eeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCC
Q psy11677 253 SQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQG 329 (462)
Q Consensus 253 ~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~ 329 (462)
++|+ +.+.+.+.|-.+..||.|.++||....+.|.+.+. ..||+....|+|++||++|||+++|++.++.+|..+-|
T Consensus 191 ~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~v~lElgG~~p~iV~~dADl~~aa~~i~~~~~~~~G 270 (466)
T cd07138 191 NLVNGDGPVVGEALSAHPDVDMVSFTGSTRAGKRVAEAAADTVKRVALELGGKSANIILDDADLEKAVPRGVAACFANSG 270 (466)
T ss_pred EEEeCCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhccCCeEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhccC
Confidence 9999 46668788878889999999999999888887653 37888888899999999999999999999999999655
Q ss_pred CCCchhHHHHHHhhhccccc
Q psy11677 330 LNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ 349 (462)
- .|.++..+..++.|.
T Consensus 271 Q----~C~a~~rv~V~~~i~ 286 (466)
T cd07138 271 Q----SCNAPTRMLVPRSRY 286 (466)
T ss_pred C----CCcCCcEEEEeHhHH
Confidence 4 566666666666554
No 87
>PRK08373 aspartate kinase; Validated
Probab=99.26 E-value=1.8e-11 Score=125.92 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=78.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++|+.+.++|||||||++||+ .|+|++|+++++.|+.+++ .+||..+...|...++.|
T Consensus 189 GGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela--------~~Gakvlhp~ai~~a~~~ 260 (341)
T PRK08373 189 GGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAA--------KLGMKALHWKAIEPVKGK 260 (341)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHH--------HCcChhhhHHHHHHHHcC
Confidence 4789999999999999999999999999999998 8999999999999998875 577877777776655449
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|...| ..||+|....
T Consensus 261 Ipi~v~~t~~~----------~~GT~I~~~~ 281 (341)
T PRK08373 261 IPIIFGRTRDW----------RMGTLVSNES 281 (341)
T ss_pred CcEEEecCCCC----------CCCcEEecCC
Confidence 99999987665 3599997643
No 88
>PRK09084 aspartate kinase III; Validated
Probab=99.25 E-value=3.8e-11 Score=127.76 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=78.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++||.++++|||||||++||+ .|+|++|+++++.|+.+++. .|..-+.+ .+...+.+.|
T Consensus 197 ggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~-----~Ga~vlh~--~~~~~~~~~~ 269 (448)
T PRK09084 197 GGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMAT-----FGAKVLHP--ATLLPAVRSN 269 (448)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHh-----CCCcccCH--HHHHHHHHcC
Confidence 6899999999999999999999999999999998 89999999999999988852 22222444 3566788999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|+.+|+ ..||+|..+
T Consensus 270 i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 270 IPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred CcEEEEeCCCCC---------CCceEEecC
Confidence 999999998884 569999754
No 89
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=99.23 E-value=7e-12 Score=133.57 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~--- 204 (462)
+......|++|.+.+.. +++.|.+++++|......|.-. ++.+++.++ ..+.+
T Consensus 37 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~---~~a~~~~~ 113 (467)
T TIGR01804 37 VERAIAAARRAQGEWASMTPEERGRILRRIAELIRERNEELAKLETLDTGKTLEETSVADMDDIADVFE---FFAGLADK 113 (467)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554332 8888888888887766544321 233333333 22211
Q ss_pred --------CC----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 205 --------SA----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 205 --------~d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
+. ...+.|+|||++|...- .|-. + +.+++-.|+ ..+++.+.++ +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N-~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~-~~l~~~~~~aglP~g 191 (467)
T TIGR01804 114 DGGEIIPLPIPSFSYTIREPLGVCVGIGAWN-YPLQIASWKIAPALAAGNAMVFKPSEITPLTA-LKVAELMEEAGLPDG 191 (467)
T ss_pred hCCccccCCCCceEEEEEeeeeEEEEECCCc-hHHHHHHHHHHHHHhcCCEEEeeCCccCcHHH-HHHHHHHHHcCcCcC
Confidence 10 13479999999994211 1211 1 116667777 7777888887 9
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++|+|+. ...+.+.|-.+..||.|.++||...-+.|.+.+. +.++++.| |++++||++|||++.|++.++.++..
T Consensus 192 v~~~v~g~~~~~~~~L~~~~~v~~V~fTGs~~~g~~v~~~a~~~l~~~~lElG-G~~~~iV~~dADl~~Aa~~i~~~~~~ 270 (467)
T TIGR01804 192 VFNVVLGKGAEVGEPLVNHKDVAKVSFTGGVPTGKKIMAAAADHLKHVTMELG-GKSPLIVFDDADLELAVDQAMNGNFF 270 (467)
T ss_pred cEEEEeCCcHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEecC-CCCeeEECCCCCHHHHHHHHHHHHHH
Confidence 9999984 3557777777778999999999999888887662 25677777 99999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+.|= .|.+...+..+..|
T Consensus 271 ~~GQ----~C~a~~rv~V~~~i 288 (467)
T TIGR01804 271 SAGQ----VCSNGTRVFVHNKI 288 (467)
T ss_pred hcCC----CCCCCCEEEEcHHH
Confidence 7764 45555555555444
No 90
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=99.22 E-value=6.1e-12 Score=134.66 Aligned_cols=133 Identities=20% Similarity=0.117 Sum_probs=105.0
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+||+++|+ +.. |..+.- ..+-+|+ ..|++.+.++ +++|+|+. ...+.+.
T Consensus 142 ~~~P~GVv~~I~p~N~--P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~ 218 (481)
T cd07141 142 RHEPVGVCGQIIPWNF--PLLMAAWKLAPALACGNTVVLKPAEQTPLTA-LYLASLIKEAGFPPGVVNVVPGYGPTAGAA 218 (481)
T ss_pred EEeceeEEEEEccChh--HHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHHcCcCccceEEEecCchHHHHH
Confidence 478999999999 466 754311 6677788 7788888776 99999983 4456777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|-.+..||+|+++||....+.|.+.+. -.||+....|++++||++|||+++|++.++.++..+.|- .|.+++.
T Consensus 219 L~~~~~vd~V~ftGs~~~g~~i~~~aa~~~~~~~~lElGG~~~~iV~~dADl~~A~~~i~~~~~~~~GQ----~C~a~~r 294 (481)
T cd07141 219 ISSHPDIDKVAFTGSTEVGKLIQQAAGKSNLKRVTLELGGKSPNIVFADADLDYAVEQAHEALFFNMGQ----CCCAGSR 294 (481)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHhhhhcCceEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----cccCCeE
Confidence 777888999999999999999977653 156666666999999999999999999999999998885 4666555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..++.|
T Consensus 295 v~V~~~i 301 (481)
T cd07141 295 TFVQESI 301 (481)
T ss_pred EEEcHHH
Confidence 5555544
No 91
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.22 E-value=2.8e-11 Score=128.51 Aligned_cols=95 Identities=25% Similarity=0.340 Sum_probs=82.5
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++||.+-++|||||||+.||+ .|+|++|+.++++|+.+++ ..|..-+++ ++...+.++|
T Consensus 197 GGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA-----~~GAkVLHp--rav~pa~~~~ 269 (447)
T COG0527 197 GGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELA-----YLGAKVLHP--RAVEPAMRSG 269 (447)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHH-----HCCchhcCH--HHHHHHHhcC
Confidence 7889999999999999999999999999999999 8999999999999999885 233444455 4778899999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
||++|.|..+|+ ..||+|.....
T Consensus 270 Ip~~i~~t~~p~---------~~GTlI~~~~~ 292 (447)
T COG0527 270 IPLRIKNTFNPD---------APGTLITAETE 292 (447)
T ss_pred CcEEEEecCCCC---------CCceEEecCCc
Confidence 999999998884 47999998754
No 92
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=99.20 E-value=2.3e-11 Score=128.87 Aligned_cols=171 Identities=20% Similarity=0.160 Sum_probs=125.6
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccccCC-------------CCCCCCceee
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDASA-------------QSGGTPVEVL 216 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~~d-------------~~~~~PlGVi 216 (462)
+++.|.+++++|..++..|..+ ++.++..++ ++....+ ..++.|+||+
T Consensus 36 ~a~~l~~~~~~l~~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv 112 (436)
T cd07135 36 LYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSGVKNDILHMLKNLK---KWAKDEKVKDGPLAFMFGKPRIRKEPLGVV 112 (436)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHH---HhhCCcccCCcccccCCCceEEEeccCcEE
Confidence 8888999998888888766432 444444444 3221110 1247999999
Q ss_pred EEEEe-CCCCcccc------------------cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCccE
Q psy11677 217 AEIWK-NETLNTTV------------------PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHIDL 273 (462)
Q Consensus 217 ~~IyE-sr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDl 273 (462)
++|++ .. |-.+ +.+++-+|+ ..+.+.+.+. +++|+|+ +.+.+.+|+... ||.
T Consensus 113 ~~I~p~N~--P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~-~~l~~l~~~~lP~g~v~vv~g~~~~~~~l~~~~--vd~ 187 (436)
T cd07135 113 LIIGPWNY--PVLLALSPLVGAIAAGCTVVLKPSELTPHTA-ALLAELVPKYLDPDAFQVVQGGVPETTALLEQK--FDK 187 (436)
T ss_pred EEECCCcc--hHHHHHHHHHHHHHcCCEEEEECCccChHHH-HHHHHHHHHhCCcCEEEEEcCCchhHHHHHhCC--CCE
Confidence 99997 44 6421 116777787 7777544444 9999998 577788888765 999
Q ss_pred EeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 274 IIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 274 iIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|.++||....+.|.+.+. .+|++....|++++||++|||+++|++.++.+++.+.|- .|.+...+..|+.|
T Consensus 188 v~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~~~iV~~dADl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V~~~i 260 (436)
T cd07135 188 IFYTGSGRVGRIIAEAAAKHLTPVTLELGGKSPVIVTKNADLELAAKRILWGKFGNAGQ----ICVAPDYVLVDPSV 260 (436)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCeEEEccCCCcEEECCCCCHHHHHHHHHHHHhccCCc----eecCCCEEeccHHH
Confidence 999999999888876442 479988888999999999999999999999999997774 45555555555544
No 93
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=99.19 E-value=2.3e-11 Score=130.00 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=101.7
Q ss_pred CCCCceeeEEEEe-CCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
++.|+||+++|++ .. |..+.- +.+-.|+ ..+++.|.++ +++|+|+. .+.+.+.
T Consensus 132 ~~~P~GVv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~ 208 (478)
T cd07131 132 RRQPIGVVALITPWNF--PVAIPSWKIFPALVCGNTVVFKPAEDTPACA-LKLVELFAEAGLPPGVVNVVHGRGEEVGEA 208 (478)
T ss_pred EeeceeEEEEECCcCc--HHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHhcCcCCCcEEEEecCchHHHHH
Confidence 5899999999997 44 643211 6777788 8888888887 99999994 3447777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|..+..||+|+++||...-+.|.+.+ +..|++....|+|++||+++||+++|++.++.++..+-|- .|.+...+
T Consensus 209 L~~~~~vd~V~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dADl~~Aa~~i~~~~~~~~GQ----~C~a~~rv 284 (478)
T cd07131 209 LVEHPDVDVVSFTGSTEVGERIGETCARPNKRVALEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQ----RCTATSRL 284 (478)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCeEE
Confidence 77777899999999999766654432 1356665566999999999999999999999999886554 46666666
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|..|
T Consensus 285 ~V~~~i 290 (478)
T cd07131 285 IVHESV 290 (478)
T ss_pred EEehhh
Confidence 666555
No 94
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.19 E-value=3.3e-11 Score=137.48 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=85.0
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|+||+.|+.+|..++||.++++|||||||++||+ .|++++|+++++.|+.+++. .|++..+..++..+.++
T Consensus 212 rggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~-------~g~~v~~~~a~~~a~~~ 284 (861)
T PRK08961 212 RGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIAT-------TGAKVLHPRSIKPCRDA 284 (861)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHH-------CCCeEECHHHHHHHHHC
Confidence 48999999999999999999999999999999998 79999999999999988852 47788899999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|++++|.|+..|+ ..||+|..+
T Consensus 285 ~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 285 GIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred CCCEEEEeCCCCC---------CCccEEeCC
Confidence 9999999998873 458888654
No 95
>PRK09034 aspartate kinase; Reviewed
Probab=99.18 E-value=6.6e-11 Score=126.13 Aligned_cols=94 Identities=26% Similarity=0.299 Sum_probs=82.6
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++||.+.++|||||||+.||+ .|+|+.+++++++|+.+++ ..|..-|.++ +...|.+++
T Consensus 197 ggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela-----~~Gakvlhp~--ai~~a~~~~ 269 (454)
T PRK09034 197 GGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELS-----YAGFSVFHDE--ALIPAYRGG 269 (454)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHH-----hCCcccCCHH--HHHHHHHcC
Confidence 7899999999999999999999999999999999 8999999999999999885 2445557775 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|..+|. ..||+|..+.
T Consensus 270 Ipi~v~~~~~p~---------~~GT~I~~~~ 291 (454)
T PRK09034 270 IPINIKNTNNPE---------DPGTLIVPDR 291 (454)
T ss_pred CCEEEEcCCCCC---------CCccEEEecc
Confidence 999999998773 5699997553
No 96
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=99.17 E-value=2.7e-11 Score=129.88 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccc-----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTD----- 203 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~----- 203 (462)
++.....|++|.+.+.. +++.|.++.++|..++..|.-. +...++.++ ..+.
T Consensus 40 v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~~~~~~~~ 116 (488)
T TIGR02299 40 VDRAAKAAKEAFKRWAELKAAERKRYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQVIRAAENFR---FFADKCEEA 116 (488)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 55666677776664433 8899999999998877665321 222222222 1110
Q ss_pred -----cCC-----CCCCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----Ce
Q psy11677 204 -----ASA-----QSGGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 204 -----~~d-----~~~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~ 251 (462)
++. ..++.|+||+++|+..- .|-. +.. +++-.|. ..+.+++.++ ++
T Consensus 117 ~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N-~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~aGlP~gv 194 (488)
T TIGR02299 117 MDGRTYPVDTHLNYTVRVPVGPVGLITPWN-APFMLSTWKIAPALAFGNTVVLKPAEWSPLTA-ARLAEIAKEAGLPDGV 194 (488)
T ss_pred cCCccccCCCceEEEEEEecceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECchhchHHH-HHHHHHHHHcCcChhh
Confidence 110 12479999999997221 2311 100 4444555 5556888887 89
Q ss_pred EEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 252 HSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 252 v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
+|+|+. ...+.+.|-.+..||.|.++||...-+.|.+.+ +-+||.....|+|++||++|||+++|++.++.++..+-
T Consensus 195 v~~v~g~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~aa~~l~~~~lElGGknp~iV~~dAdl~~A~~~i~~~~~~~~ 274 (488)
T TIGR02299 195 FNLVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRNGADTLKRFSMELGGKSPVIVFDDADLERALDAVVFMIFSFN 274 (488)
T ss_pred eeEEeCCchHHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHhcCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcc
Confidence 999983 334545566678899999999999999998763 24788888889999999999999999999999998854
Q ss_pred CCCCchhHHHHHHhhhcccc
Q psy11677 329 GLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~ 348 (462)
| ..|.+++.+..|..|
T Consensus 275 G----Q~C~a~~rv~V~~~v 290 (488)
T TIGR02299 275 G----ERCTASSRLLVQESI 290 (488)
T ss_pred C----CCCCCCcEEEEcHHH
Confidence 4 467776666666544
No 97
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=99.15 E-value=3.7e-11 Score=127.63 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~--- 204 (462)
+.+....|++|.+.... +++.|.++.++|..++..|.-. +..+++.++ ..+.+
T Consensus 21 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~a~~ev~~~~~~~~---~~~~~~~~ 97 (457)
T cd07108 21 VDRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEELARLLALETGNALRTQARPEAAVLADLFR---YFGGLAGE 97 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554333 8889999999888776655421 223333333 22111
Q ss_pred ------C--C----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---Ce
Q psy11677 205 ------S--A----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PL 251 (462)
Q Consensus 205 ------~--d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~ 251 (462)
+ . ...+.|+||+++|+..- .|-. + +.+++-.|+ ..+++.+.++ ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~~~~~~lP~~~ 175 (457)
T cd07108 98 LKGETLPFGPDVLTYTVREPLGVVGAILPWN-APLMLAALKIAPALVAGNTVVLKAAEDAPLAV-LLLAEILAQVLPAGV 175 (457)
T ss_pred hCCceeccCCCeeEEEEeecceEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCcCc
Confidence 1 0 12478999999997322 2321 1 116666777 6666555554 99
Q ss_pred EEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 252 HSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 252 v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
+++|+ +...+.+.|-.+..+|.|.++||....+.|.+.+. .+||+.+..|++++||++|||+++|++.++.+|...
T Consensus 176 ~~~v~g~~~~~~~~L~~~~~vd~v~ftGs~~~g~~v~~~aa~~l~~~~lelgG~~~~iV~~dAdl~~Aa~~iv~~~~f~- 254 (457)
T cd07108 176 LNVITGYGEECGAALVDHPDVDKVTFTGSTEVGKIIYRAAADRLIPVSLELGGKSPMIVFPDADLDDAVDGAIAGMRFT- 254 (457)
T ss_pred EEEEeCCchHHHHHHhcCCCcCEEEEECcHHHHHHHHHHHhccCCeEEEECCCCCeeEECCCCCHHHHHHHHHHhhHhh-
Confidence 99998 33335565556667999999999999999988762 379999999999999999999999999999997321
Q ss_pred CCCCchhHHHHHHhhhcccc
Q psy11677 329 GLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~ 348 (462)
|....|.++..+..|+.|
T Consensus 255 --~~GQ~C~a~~rv~V~~~i 272 (457)
T cd07108 255 --RQGQSCTAGSRLFVHEDI 272 (457)
T ss_pred --cCCCCCCCCeEEEEehHH
Confidence 234456666666666554
No 98
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=99.15 E-value=6.8e-11 Score=127.88 Aligned_cols=194 Identities=15% Similarity=0.107 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccc----cccc--
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIG----TFFT-- 202 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~----t~~a-- 202 (462)
+......|++|.+.+.. +++.|.++.++|..++..|.-. +..+++.++.- ..+.
T Consensus 71 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~i~~l~~~~~~~~~~~~~ 150 (518)
T cd07125 71 VDAALAIAAAAFAGWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQARELFSD 150 (518)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55556667776654332 8899999999998887766311 22222222100 0110
Q ss_pred -ccCCC------CCCCCceeeEEEEeCCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEE
Q psy11677 203 -DASAQ------SGGTPVEVLAEIWKNETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 203 -~~~d~------~~~~PlGVi~~IyEsr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.++.+ ..+.|+||+++|-..- .|- |+ +.+.+-.|. ..+++.+.++ ++++
T Consensus 151 ~~~~~~~g~~~~~~~~P~GVV~~I~p~N-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~ll~eaGlP~gvv~ 228 (518)
T cd07125 151 PELPGPTGELNGLELHGRGVFVCISPWN-FPLAIFTGQIAAALAAGNTVIAKPAEQTPLIA-ARAVELLHEAGVPRDVLQ 228 (518)
T ss_pred ccccCCCCceeEEEEecccEEEEECCcc-hHHHHHHHHHHHHHHcCCEEEEeCCCcCcHHH-HHHHHHHHHcCCCCCcEE
Confidence 12221 2378999999993110 121 11 116666777 7777877776 9999
Q ss_pred eec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 254 QVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 254 ~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
+|+ +.+.+.+.|-.+..||+|.++||....+.|.+++. .+||+....|++++||++|||+++|++.++++|+.+
T Consensus 229 vv~g~~~~~~~~L~~~~~vd~V~ftGs~~~g~~i~~~aa~~~~~~~~v~lElgGk~p~iV~~dADl~~Aa~~iv~g~f~n 308 (518)
T cd07125 229 LVPGDGEEIGEALVAHPRIDGVIFTGSTETAKLINRALAERDGPILPLIAETGGKNAMIVDSTALPEQAVKDVVQSAFGS 308 (518)
T ss_pred EEecCchhhHHHHhcCCCcCEEEEECCHHHHHHHHHHhhhccCCCceEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 999 46667777777788999999999999999988642 379999999999999999999999999999999998
Q ss_pred CCCCCchhHHHHHHhhhcccc
Q psy11677 328 QGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.|- .|.+...+..+..|
T Consensus 309 sGQ----~C~a~~rv~V~~~i 325 (518)
T cd07125 309 AGQ----RCSALRLLYLQEEI 325 (518)
T ss_pred CCC----CCCCCeEEEEcchh
Confidence 775 35555555555544
No 99
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=99.15 E-value=1.4e-10 Score=123.63 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhc----CchhcHHH-----------HHHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVI----CNGMQKEA-----------IKQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~----AN~~D~~~-----------~~~~~~~~~--i~t 199 (462)
+......|++|.+.+.. +++.|.++.++|.. ++.+.+.. ++.++...+ .|
T Consensus 37 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~a~~~~~- 115 (468)
T cd07088 37 ADRAVDAAEAAQKAWERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEWARRIEG- 115 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 45555666666554332 88888888877775 44444322 333333222 01
Q ss_pred cccccC--C---CCCCCCceeeEEEE-eCCCCccccc------------------ccccccchHHHHHhhcCCC----Ce
Q psy11677 200 FFTDAS--A---QSGGTPVEVLAEIW-KNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 200 ~~a~~~--d---~~~~~PlGVi~~Iy-Esr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~ 251 (462)
.+...+ . ...+.|+||+++|+ +.. |..+. .+++-+|+ ..+++.+.++ ++
T Consensus 116 ~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~--P~~~~~~~~~~AL~aGN~VVlKps~~~p~~~-~~l~~~~~~aglP~gv 192 (468)
T cd07088 116 EIIPSDRPNENIFIFKVPIGVVAGILPWNF--PFFLIARKLAPALVTGNTIVIKPSEETPLNA-LEFAELVDEAGLPAGV 192 (468)
T ss_pred ccccCccccceeEEEEecceeEEEEccCch--HHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCcCccc
Confidence 110000 0 13479999999998 566 75321 16677787 7777777776 89
Q ss_pred EEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHH----HhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 252 HSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSI----QQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 252 v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v----~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++|+. .+.+.+.|-.+..||+|.++||...-+.| .++. .|++....|++++||++|||+++|++.++.++..
T Consensus 193 v~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~aa~~~--~~~~lelGG~~~~iV~~dadl~~aa~~iv~~~~~ 270 (468)
T cd07088 193 LNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAENI--TKVSLELGGKAPAIVMKDADLDLAVKAIVDSRII 270 (468)
T ss_pred eEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHhcC--CcEEEECCCCCeEEECCCCCHHHHHHHHHHHHhc
Confidence 999984 45566666667789999999997755544 4443 5666666699999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhccccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
+.|- .|.+...+..|+.|.
T Consensus 271 ~~GQ----~C~a~~rv~V~~~i~ 289 (468)
T cd07088 271 NCGQ----VCTCAERVYVHEDIY 289 (468)
T ss_pred ccCc----CCcCCeEEEEcHHHH
Confidence 8774 466666565555543
No 100
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=99.15 E-value=3.1e-11 Score=128.16 Aligned_cols=192 Identities=15% Similarity=0.078 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHH-H------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcc---------cc
Q psy11677 149 VEVLAENVNLKMEILV-N------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRK---------IG 198 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~-~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~---------i~ 198 (462)
+......|++|.+... . +++.|.++.+++..+...|.-. +..+++.++ -|
T Consensus 21 v~~av~~a~~A~~~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~g 100 (454)
T cd07109 21 VDRAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPLTQARADVEAAARYFEYYGGAADKLHG 100 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555566666655433 1 8888888888888777665422 222222222 00
Q ss_pred ccccccCC---CCCCCCceeeEEEE-eCCCCccc-c-----------------cccccccchHHHHHhhcCCC----CeE
Q psy11677 199 TFFTDASA---QSGGTPVEVLAEIW-KNETLNTT-V-----------------PKKHAKTSQCKYFTKMLPRY----PLH 252 (462)
Q Consensus 199 t~~a~~~d---~~~~~PlGVi~~Iy-Esr~~Pnv-~-----------------~~~ea~~sn~~~l~~al~~~----~~v 252 (462)
..+...++ ...+.|+|||++|. ... |-. + +.+.+-+|+ ..+++.+.++ +++
T Consensus 101 ~~~~~~~~~~~~~~~~P~GVv~~I~P~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gv~ 177 (454)
T cd07109 101 ETIPLGPGYFVYTVREPHGVTGHIIPWNY--PLQITGRSVAPALAAGNAVVVKPAEDAPLTA-LRLAELAEEAGLPAGAL 177 (454)
T ss_pred cccccCCCceEEEEEeeeeEEEEECCCch--HHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCcCccce
Confidence 01110011 13488999999998 445 721 1 116666777 7777888886 899
Q ss_pred Eeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 253 SQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 253 ~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
|+|+ +++....|+ .+..||.|...||...-+.|.+.+ +.+|++....|++++||++|||+++|++.++.+++.+.
T Consensus 178 ~~v~g~~~~~~~~L~-~~~~v~~v~ftGs~~~g~~i~~~aa~~~~p~~lElgG~~~~iV~~daDl~~Aa~~i~~~~~~~~ 256 (454)
T cd07109 178 NVVTGLGAEAGAALV-AHPGVDHISFTGSVETGIAVMRAAAENVVPVTLELGGKSPQIVFADADLEAALPVVVNAIIQNA 256 (454)
T ss_pred EEEecCchHHHHHHh-cCCCCCEEEEECCHHHHHHHHHHHhhcCCcEEEECCCCCceEECCCCCHHHHHHHHHHHHHhcc
Confidence 9998 466666666 566799999999999877777654 25899888889999999999999999999999999988
Q ss_pred CCCCchhHHHHHHhhhcccc
Q psy11677 329 GLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~ 348 (462)
|- .|.++..+..++.|
T Consensus 257 GQ----~C~a~~rv~V~~~i 272 (454)
T cd07109 257 GQ----TCSAGSRLLVHRSI 272 (454)
T ss_pred CC----CCccCcEEEEcHHH
Confidence 85 35554444444443
No 101
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=99.15 E-value=5.9e-11 Score=125.90 Aligned_cols=194 Identities=18% Similarity=0.097 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcc----cccccc-
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRK----IGTFFT- 202 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~----i~t~~a- 202 (462)
+.+....|++|...+.. +++.|.++.++|..++..|.-. +...++.++ ......
T Consensus 21 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~~~~~~~~~ 100 (455)
T cd07093 21 VDAAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADELALLESLDTGKPITLARTRDIPRAAANFRFFADYILQLDG 100 (455)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhHHHhCC
Confidence 55666667766665443 8888888888887666544321 111111111 000100
Q ss_pred -ccCC--C----CCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----CeEE
Q psy11677 203 -DASA--Q----SGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 203 -~~~d--~----~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.++. . ..+.|+||+++|+..- .|-. + +.+.+-.|+ ..+.+.+.++ +++|
T Consensus 101 ~~~~~~~~~~~~~~~~P~GVv~~i~p~N-~P~~~~~~~~~~AL~aGN~VIlkps~~~p~~~-~~l~~~l~~aglP~g~v~ 178 (455)
T cd07093 101 ESYPQDGGALNYVLRQPVGVAGLITPWN-LPLMLLTWKIAPALAFGNTVVLKPSEWTPLTA-WLLAELANEAGLPPGVVN 178 (455)
T ss_pred ccccCCCCceEEEEEEeeeEEEEECCCC-hHHHHHHHHHHHHHhcCCEEEeECCCcCcHHH-HHHHHHHHhcCCCccceE
Confidence 0111 1 2379999999998422 2421 1 115666676 7777888877 8999
Q ss_pred eecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+++. ...+.+.|-.+..||+|..+||....++|.+.+. .+||+....|++++||+++||+++|++.++.++..+-|-
T Consensus 179 ~v~g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dAdl~~a~~~i~~~~~~~~GQ 258 (455)
T cd07093 179 VVHGFGPEAGAALVAHPDVDLISFTGETATGRTIMRAAAPNLKPVSLELGGKNPNIVFADADLDRAVDAAVRSSFSNNGE 258 (455)
T ss_pred EEecCchHHHHHHhcCCCccEEEEECCHHHHHHHHHHHhhcccceEeecCCCCceEECCCCCHHHHHHHHHHHHHhccCC
Confidence 9983 3346666666677999999999999999988652 589998888999999999999999999999999886554
Q ss_pred CCchhHHHHHHhhhcccc
Q psy11677 331 NPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (462)
.|.+...+..++.+
T Consensus 259 ----~C~a~~~v~v~~~i 272 (455)
T cd07093 259 ----VCLAGSRILVQRSI 272 (455)
T ss_pred ----CcCCCceEEEcHHH
Confidence 45555555555444
No 102
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=99.15 E-value=5.1e-11 Score=126.56 Aligned_cols=197 Identities=14% Similarity=0.050 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~--i~t 199 (462)
+......|++|.+.+.. +++.|.++.++|..++..|.-. ++.++..++ .+.
T Consensus 20 v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~~~~ 99 (454)
T cd07101 20 VEAAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETGKARRHAFEEVLDVAIVARYYARRAERLLKP 99 (454)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555666666554332 8899999999888887766421 122222111 000
Q ss_pred c-c-cccCC----CCCCCCceeeEEEEe-CCCCcc-ccc-----------------ccccccchHHHHHhhcCCC----C
Q psy11677 200 F-F-TDASA----QSGGTPVEVLAEIWK-NETLNT-TVP-----------------KKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 200 ~-~-a~~~d----~~~~~PlGVi~~IyE-sr~~Pn-v~~-----------------~~ea~~sn~~~l~~al~~~----~ 250 (462)
. . ..++. ...+.|+||+++|+. .. |- .+. .+.+-.|+ ..|.+.+.++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~--P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~-~~l~~~~~~aglP~g 176 (454)
T cd07101 100 RRRRGAIPVLTRTTVNRRPKGVVGVISPWNY--PLTLAVSDAIPALLAGNAVVLKPDSQTALTA-LWAVELLIEAGLPRD 176 (454)
T ss_pred ccccccCCCCceEEEEEEeccEEEEECCCcc--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCcCCC
Confidence 0 0 01111 124799999999986 44 62 111 16666677 6777777776 8
Q ss_pred eEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ .++....|++ .+|.|.++||....+.|.+++. .+||+.+..|++++||++|||+++|++.++.++..
T Consensus 177 v~~~v~g~~~~~~~~l~~---~~~~V~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~iV~~dAdl~~a~~~i~~~~~~ 253 (454)
T cd07101 177 LWQVVTGPGSEVGGAIVD---NADYVMFTGSTATGRVVAERAGRRLIGCSLELGGKNPMIVLEDADLDKAAAGAVRACFS 253 (454)
T ss_pred cEEEEeCCcHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHhcCCcEEEECCCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 999998 3555666675 3799999999999999888652 48999999999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHhhhcccccccChhh
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEMDVSGLPC 355 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (462)
+-|- .|.+...+..|+.|.-.+.+.
T Consensus 254 ~sGQ----~C~a~~rv~V~~~i~d~f~~~ 278 (454)
T cd07101 254 NAGQ----LCVSIERIYVHESVYDEFVRR 278 (454)
T ss_pred cCCC----CcccCeEEEEcHHHHHHHHHH
Confidence 6553 566666666666554333333
No 103
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.14 E-value=1.8e-10 Score=114.16 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=87.9
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++|.|-.++++|.+++||.|++|||||+||-.. ..|+.+.|++++.+|++++.. ...+..|.|.+|++||....+++
T Consensus 210 VIDKDlasalLA~~i~AD~liILTdVd~Vy~n~-gkp~q~~L~~v~~~e~~~yl~--eg~Fa~GSM~PKVeAai~Fv~~~ 286 (312)
T COG0549 210 VIDKDLASALLAEQIDADLLIILTDVDAVYVNF-GKPNQQALDRVTVDEMEKYLA--EGQFAAGSMGPKVEAAISFVENT 286 (312)
T ss_pred EEccHHHHHHHHHHhcCCEEEEEeccchheecC-CCccchhhcccCHHHHHHHHh--cCCCCCCCccHHHHHHHHHHHcC
Confidence 489999999999999999999999999999753 357889999999999988763 45688999999999999888874
Q ss_pred -CeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 111 -VSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 111 -v~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
-+++|.+ .+.+.+++.|+ .||.|.+
T Consensus 287 gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 287 GKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred CCceEECc---HHHHHHHhccC-CCcEecC
Confidence 4788875 57788999998 7999864
No 104
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=5.8e-11 Score=127.80 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhCCchhhcCchhcHHH---------------HHHHHhh-ccc---
Q psy11677 149 VEVLAENVNLKMEILV------------NSATWALDRGVSVVICNGMQKEA---------------IKQIVAG-RKI--- 197 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~------------~iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~-~~i--- 197 (462)
+......|++|.+... .+++.|++++++|..++..|.-+ ++..+.- .+.
T Consensus 55 v~~av~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~Ev~~~~~~l~~~a~~~~~~~~~ 134 (496)
T PLN00412 55 VNKAMESAKAAQKAWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGVRILGE 134 (496)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455556665554322 28899999999988888776422 2222211 110
Q ss_pred ccccc--ccCC-------CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC
Q psy11677 198 GTFFT--DASA-------QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY 249 (462)
Q Consensus 198 ~t~~a--~~~d-------~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~ 249 (462)
|..+. .++. ...+.|+||+++| |+.. +..+.. +.+..++ ..+++.+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P--~~~~~~~i~~ALaaGN~VIlKPs~~t~~~~-~~l~~~l~~a 211 (496)
T PLN00412 135 GKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYP--VNLAVSKIAPALIAGNAVVLKPPTQGAVAA-LHMVHCFHLA 211 (496)
T ss_pred CcccccccCCCccCCceeEEEEecceEEEEECCCCch--HHHHHHHHHHHHHcCCEEEEECCccCcHHH-HHHHHHHHHh
Confidence 00000 0111 1236999999999 7655 442111 5555566 6677777766
Q ss_pred ----CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHccc
Q psy11677 250 ----PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGS 324 (462)
Q Consensus 250 ----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak 324 (462)
+++|+|+. ...+.++|..+..||.|.++|| .--+.|.+.+..+||.....|++++||++|||+++|++.++++|
T Consensus 212 glP~g~~~~v~g~~~~~~~~l~~~~~v~~V~ftGs-~~g~~v~~~a~~~~~~lElGG~~p~iV~~dADl~~Aa~~i~~~~ 290 (496)
T PLN00412 212 GFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGG-DTGIAISKKAGMVPLQMELGGKDACIVLEDADLDLAAANIIKGG 290 (496)
T ss_pred CCCcccEEEEecCchHHHHHHhcCCCcCEEEEeCh-HHHHHHHHHhCCCcEEEEcCCCceEEEcCCCCHHHHHHHHHHHH
Confidence 99999984 5568888888888999999999 55555555555699999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHhhhcccc
Q psy11677 325 RVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
..+.|- .|.+...+..|..|
T Consensus 291 ~~~~GQ----~C~a~~rv~V~~~i 310 (496)
T PLN00412 291 FSYSGQ----RCTAVKVVLVMESV 310 (496)
T ss_pred HhcCCC----CCccCeEEEEcHHH
Confidence 998774 35555555544444
No 105
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.13 E-value=9.8e-11 Score=132.85 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=81.6
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++||.++++|||||||++||+ +|+|++|+++++.|+.++.. . |-+..+..++..+.++|
T Consensus 205 gGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~-----~--G~kvlhp~a~~~a~~~~ 277 (819)
T PRK09436 205 NGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSY-----F--GAKVLHPRTIAPIAQFQ 277 (819)
T ss_pred CCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHh-----c--CCccchHHHHHHHHHCC
Confidence 5679999999999999999999999999999998 89999999999999988742 2 33566778999999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|+.+|+ ..||+|...
T Consensus 278 Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 278 IPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred ceEEEccCCCCC---------CCceEEEec
Confidence 999999998884 468888653
No 106
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=99.12 E-value=5.5e-11 Score=127.35 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=123.0
Q ss_pred HHHHHHhCCchhhcCchhcHH---------HHHHHHhhcccccccccc-----------CC----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKE---------AIKQIVAGRKIGTFFTDA-----------SA----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~---------~~~~~~~~~~i~t~~a~~-----------~d----~~~~~PlGVi~~IyE 221 (462)
+++.|.++.++|..++..|.- .+..+++.++ ..+.. +. ...+.|+|||++|++
T Consensus 77 ~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~l~---~~~~~~~~~~g~~~~~~~~~~~~~~~~P~GvV~~I~p 153 (484)
T cd07144 77 LADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIR---YYAGWADKIQGKTIPTSPNKLAYTLHEPYGVCGQIIP 153 (484)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH---HHHHHHHHhcCceecCCCCceEEEEEecceEEEEECc
Confidence 888888888888877654421 1333333333 22110 10 124799999999997
Q ss_pred -CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeec
Q psy11677 222 -NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 222 -sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPr 277 (462)
.. |-.+. ..++-.|+ ..|.+.+.++ +.+|+|.. ...+.+.|..+..||+|.++
T Consensus 154 ~N~--P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~~vd~V~fT 230 (484)
T cd07144 154 WNY--PLAMAAWKLAPALAAGNTVVIKPAENTPLSL-LYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEHPDVDKIAFT 230 (484)
T ss_pred CCC--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHhCcCCCcEEEEecCCchHHHHHhcCCCcCEEEEE
Confidence 55 75321 16666777 7777777776 99999983 44466777777789999999
Q ss_pred CChhHHHHHHhhC--CCcce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChh
Q psy11677 278 GSSDLVRSIQQKS--QHIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLP 354 (462)
Q Consensus 278 G~~~lv~~v~~~s--~~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (462)
||...-+.|.+.+ +..|+ ++.| |++++||++|||+++|++-++.++..+.| ..|.+...+..|..|.-.+.+
T Consensus 231 GS~~~g~~i~~~a~~~~~~~~lElG-Gk~p~iV~~dADl~~Aa~~i~~~~f~~~G----Q~C~a~~rv~V~~~i~d~f~~ 305 (484)
T cd07144 231 GSTATGRLVMKAAAQNLKAVTLECG-GKSPALVFEDADLDQAVKWAAAGIMYNSG----QNCTATSRIYVQESIYDKFVE 305 (484)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHhcCC----CCCCCCceEEEcHHHHHHHHH
Confidence 9999988887743 13555 7777 99999999999999999999988887544 466666666666655433333
No 107
>PLN02825 amino-acid N-acetyltransferase
Probab=99.12 E-value=2e-10 Score=123.70 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=94.6
Q ss_pred HHHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH
Q psy11677 13 FLTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD 81 (462)
Q Consensus 13 ~~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~ 81 (462)
-.+-++.+++.+ .+.++-..+.|++|+.+|.+|+||+|||+||++ +++. ++++|++++..|++
T Consensus 158 d~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~-----~g~li~~l~~~e~~ 231 (515)
T PLN02825 158 DVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE-----NGRLIRFMTLEEAD 231 (515)
T ss_pred cHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC-----CCCCcCcCCHHHHH
Confidence 344455566655 134455689999999999999999999999977 4543 47899999999887
Q ss_pred hhhhcC--------C---------------CC-------------------------------C----------------
Q psy11677 82 TVQFGQ--------K---------------SK-------------------------------V---------------- 91 (462)
Q Consensus 82 ~l~~~~--------~---------------s~-------------------------------~---------------- 91 (462)
+++... . -. .
T Consensus 232 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
T PLN02825 232 MLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEE 311 (515)
T ss_pred HHHHhhhhcchhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchh
Confidence 665210 0 00 0
Q ss_pred ---CCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccCC
Q psy11677 92 ---GTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 92 ---gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~ 141 (462)
.+.+..+|+.+|..||+.|| |+|++++..++. |.++|+.+++||+|..+.
T Consensus 312 ~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~ 366 (515)
T PLN02825 312 RLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDM 366 (515)
T ss_pred hchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccCh
Confidence 12234567999999999999 899999999999 889999999999999764
No 108
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=99.12 E-value=5.5e-11 Score=127.53 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~--- 204 (462)
+......|++|.+.+.. +++.|.++.+++......|.-. +...++.++ ..+.+
T Consensus 46 v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~---~~~~~~~~ 122 (488)
T PRK13252 46 VEAAVASAKQGQKIWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKPIQETSVVDIVTGADVLE---YYAGLAPA 122 (488)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554322 8888888888887766654432 111122222 11111
Q ss_pred --------CC----CCCCCCceeeEEEEeCCCCcccc-------------------c--ccccccchHHHHHhhcCCC--
Q psy11677 205 --------SA----QSGGTPVEVLAEIWKNETLNTTV-------------------P--KKHAKTSQCKYFTKMLPRY-- 249 (462)
Q Consensus 205 --------~d----~~~~~PlGVi~~IyEsr~~Pnv~-------------------~--~~ea~~sn~~~l~~al~~~-- 249 (462)
+. ...+.|+||+++|. . +|.- . .+++-.|+ ..+++.+.++
T Consensus 123 ~~g~~~~~~~~~~~~~~~~PlGVv~~I~--p--~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~t~-~~l~~~~~~agl 197 (488)
T PRK13252 123 LEGEQIPLRGGSFVYTRREPLGVCAGIG--A--WNYPIQIACWKSAPALAAGNAMIFKPSEVTPLTA-LKLAEIYTEAGL 197 (488)
T ss_pred hcCceeccCCCceEEEEEeeeeEEEEEC--C--CchHHHHHHHHHHHHHhcCCeEEEeCCccCcHHH-HHHHHHHHHcCc
Confidence 11 12478999999993 2 3421 1 16667787 7777888776
Q ss_pred --CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 --PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 --~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++|+|.....+.+.|-.+..||.|..+||...-+.|.+++. ..||+.-..|++++||++|||+++|++.++.++.
T Consensus 198 P~g~v~~v~g~~~~~~~L~~~~~vd~V~fTGS~~~g~~i~~~aa~~l~~~~lElgG~~p~iV~~dAdl~~A~~~i~~~~~ 277 (488)
T PRK13252 198 PDGVFNVVQGDGRVGAWLTEHPDIAKVSFTGGVPTGKKVMAAAAASLKEVTMELGGKSPLIVFDDADLDRAADIAMLANF 277 (488)
T ss_pred CcccEEEEecCcHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEEcCCCCeeEECCCCCHHHHHHHHHHHHH
Confidence 999999843337777777788999999999999999888663 3688888999999999999999999999999998
Q ss_pred CCCCCCCchhHHHHHHhhhcccc
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.+-| ..|.+...+..|..|
T Consensus 278 ~~~G----Q~C~a~~rv~V~~~i 296 (488)
T PRK13252 278 YSSG----QVCTNGTRVFVQKSI 296 (488)
T ss_pred hhcC----CCCCCCeEEEEcHHH
Confidence 8544 456666666666554
No 109
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=99.12 E-value=8.1e-11 Score=125.92 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=96.0
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+ +.. |..+.- +.+-.|. ..+.+++.++ +++|+|+ +++....|
T Consensus 133 ~~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~l~~aglP~g~~~~v~g~~~~~~~L 209 (477)
T TIGR01722 133 IRQPLGVCAGITPFNF--PAMIPLWMFPIAIACGNTFVLKPSEKVPSAA-VKLAELFSEAGAPDGVLNVVHGDKEAVDRL 209 (477)
T ss_pred EEcccceEEEEccCCh--HHHHHHHHHHHHHhcCCEEEeeCcccChHHH-HHHHHHHHHhCcCCCeEEEEeCCHHHHHHH
Confidence 589999999999 577 864221 4555565 6666888777 9999998 67777777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
++..+ ||.|.++||....+.|.+.+. ..||+.+..|+|++||++|||+++|++.++.++..+-|=
T Consensus 210 ~~~~~-v~~V~ftGS~~~g~~v~~~a~~~~~~v~lElGG~n~~iV~~dADl~~a~~~i~~~~f~~~GQ 276 (477)
T TIGR01722 210 LEHPD-VKAVSFVGSTPIGRYIHTTGSAHGKRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQ 276 (477)
T ss_pred HcCCC-cCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCceEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 77655 999999999999999977642 469999999999999999999999999999997765444
No 110
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=99.12 E-value=6.1e-11 Score=126.99 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHH-HHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcc-cc
Q psy11677 149 VEVLAENVNLKMEI-LVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRK-IG 198 (462)
Q Consensus 149 ~~~ia~~AK~As~~-L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~-i~ 198 (462)
+......|++|.+. +.. +++.|.++.+++..++..|.-. ++.++..++ ++
T Consensus 38 v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~~~~ 117 (481)
T TIGR03216 38 VDAAVAAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFADVVKNAP 117 (481)
T ss_pred HHHHHHHHHHHhHhhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556655543 222 8888888888888777654422 222233222 00
Q ss_pred ccccc--cCC------CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---
Q psy11677 199 TFFTD--ASA------QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 199 t~~a~--~~d------~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~--- 249 (462)
..... .+. ...+.|+||+++|+..- .|-. + +.+++-.|+ ..+.+.+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N-~Pl~~~~~~~~~ALaaGN~vvlKPs~~tp~t~-~~l~~l~~~aglP 195 (481)
T TIGR03216 118 TECFEMATPDGKGALNYAVRKPLGVVGVISPWN-LPLLLMTWKVGPALACGNTVVVKPSEETPGTA-TLLGEVMNAVGVP 195 (481)
T ss_pred CccccccCCCCCCceeEEEEeccceEEEECCCC-cHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCCC
Confidence 00000 011 12478999999998211 2311 1 116667787 7777888776
Q ss_pred -CeEEeec--CHHHHHHHhcCCCCccEEe----ecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHc
Q psy11677 250 -PLHSQVS--TREEISDLLSMEKHIDLII----PRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARS 322 (462)
Q Consensus 250 -~~v~~v~--~r~~~~~ll~~~~~iDliI----PrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~n 322 (462)
+++++|+ .++.+.++|..+..||.|. |++|..+.+.+.++.+ .++++.| |++++||++|||+++|++.++.
T Consensus 196 ~g~~~~v~g~~~~~~~~~l~~~~~vd~v~fTGS~~~G~~i~~~aa~~~~-~~~lElg-G~n~~iV~~dadl~~aa~~i~~ 273 (481)
T TIGR03216 196 KGVYNVVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMKAAADGVK-PVSFELG-GKNAAIVFADCDFDAAVAGILR 273 (481)
T ss_pred cCceEEEecCChhHHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhcCCC-eEEEECC-CCCeEEECCCCCHHHHHHHHHH
Confidence 8999998 3667899999999999999 7777888888877643 4456666 9999999999999999999999
Q ss_pred ccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 323 GSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 323 ak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
++..+ ....|.+...+..+..|
T Consensus 274 ~~f~~----~GQ~C~a~~rv~V~~~i 295 (481)
T TIGR03216 274 SAFLN----TGQVCLGTERVYVERPI 295 (481)
T ss_pred HHHhc----CCCCCCCCeEEEEcHHH
Confidence 99764 44466666666666654
No 111
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=99.11 E-value=9.3e-11 Score=125.44 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcC----chhcHHH----HHHHHhhcc---------ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVIC----NGMQKEA----IKQIVAGRK---------IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~A----N~~D~~~----~~~~~~~~~---------i~t 199 (462)
+......|++|.+.+.. +++.|.++.+++... +.+.+.. +...++.++ .|.
T Consensus 40 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~~g~ 119 (478)
T cd07085 40 VDAAVAAAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSIPHLLKGE 119 (478)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 55556666666554332 888888888877764 4444322 111222221 011
Q ss_pred ccccc-CC---CCCCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----CeEE
Q psy11677 200 FFTDA-SA---QSGGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 200 ~~a~~-~d---~~~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.+... +. ...+.|+||+++|+..- .|-.+. .+.+-.|+ ..+++.+.++ ++++
T Consensus 120 ~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~i~~ALaaGN~VvlKps~~tp~~~-~~l~~~l~~aGlP~gvv~ 197 (478)
T cd07085 120 YLENVARGIDTYSYRQPLGVVAGITPFN-FPAMIPLWMFPMAIACGNTFVLKPSERVPGAA-MRLAELLQEAGLPDGVLN 197 (478)
T ss_pred ecccCCCCceeEEEEecceEEEEECCCC-hHHHHHHHHHHHHHhcCCEEEEECCCcCcHHH-HHHHHHHHHhCCCCCcEE
Confidence 11110 10 13489999999998632 263211 15566677 7777777776 9999
Q ss_pred eec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+|+ +++....|++.. .||.|..+||....+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+.|-
T Consensus 198 ~v~g~~~~~~~L~~~~-~v~~V~fTGs~~~g~~i~~~aa~~~~~~~lElgGk~p~iV~~dADl~~aa~~i~~~~~~~~GQ 276 (478)
T cd07085 198 VVHGGKEAVNALLDHP-DIKAVSFVGSTPVGEYIYERAAANGKRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQ 276 (478)
T ss_pred EEecCHHHHHHHhcCC-CcCEEEEECCHHHHHHHHHHHhhcCCcEEecCCCCCceEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 998 676666677655 4999999999999999987652 489999999999999999999999999999999998775
Q ss_pred CCchhHHHHHHhhhc
Q psy11677 331 NPEDRAKAIYNLADQ 345 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~ 345 (462)
.|.+...+..+
T Consensus 277 ----~C~a~~rv~V~ 287 (478)
T cd07085 277 ----RCMALSVAVAV 287 (478)
T ss_pred ----CCCCCeEEEEe
Confidence 34444444433
No 112
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=99.11 E-value=6.6e-11 Score=125.38 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH--------HHHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE--------AIKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~--------~~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|++|.+.... +++.|.++.++|..+=..|.- .+...++.++ ..+.+.
T Consensus 21 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~---~~~~~~~~~ 97 (446)
T cd07106 21 LDQAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAEAQFEVGGAVAWLR---YTASLDLPD 97 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHhhhhcC
Confidence 55555666665554332 777777777777665332210 1333444443 322221
Q ss_pred -------C---CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEe
Q psy11677 206 -------A---QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQ 254 (462)
Q Consensus 206 -------d---~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~ 254 (462)
. ...+.|+||+++|++.- .|-. + +..++-+|+ ..+++.+.++ +++++
T Consensus 98 ~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~~~~~lP~g~~~~ 175 (446)
T cd07106 98 EVIEDDDTRRVELRRKPLGVVAAIVPWN-FPLLLAAWKIAPALLAGNTVVLKPSPFTPLCT-LKLGELAQEVLPPGVLNV 175 (446)
T ss_pred ccccCCCCceEEEEEEcceEEEEEcCCC-hHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHhCCcCeEEE
Confidence 0 12478999999998633 3421 1 116666777 6666655555 99999
Q ss_pred ecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCC
Q psy11677 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLN 331 (462)
Q Consensus 255 v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~ 331 (462)
|+....+.+.|..+..||.|+.+||....+.|.+++. +.++++.| |++++||++|||+++|++.++.+|..+-|-
T Consensus 176 v~g~~~~~~~l~~~~~vd~V~fTGs~~~g~~v~~~aa~~~~~~~lElG-G~~p~iV~~dADl~~aa~~iv~~~~~~~GQ- 253 (446)
T cd07106 176 VSGGDELGPALTSHPDIRKISFTGSTATGKKVMASAAKTLKRVTLELG-GNDAAIVLPDVDIDAVAPKLFWGAFINSGQ- 253 (446)
T ss_pred eeCChhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeeEEecC-CCCeeEECCCCCHHHHHHHHHHHHHHhcCC-
Confidence 9843346677767778999999999999999888652 14467785 999999999999999999999999996554
Q ss_pred CchhHHHHHHhhhcccc
Q psy11677 332 PEDRAKAIYNLADQGEM 348 (462)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (462)
.|.+...+..|+.|
T Consensus 254 ---~C~a~~rv~V~~~v 267 (446)
T cd07106 254 ---VCAAIKRLYVHESI 267 (446)
T ss_pred ---CCCCCcEEEEcccc
Confidence 55555555555554
No 113
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=99.10 E-value=3.6e-11 Score=127.74 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=103.7
Q ss_pred CCCCceeeEEE--EeCCCCcccc-----------------cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTTV-----------------PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv~-----------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+||+++| |... +..+ +.+.+..++ ..|++.+.++ +.+|+|+. .+.+.+.
T Consensus 116 ~~~P~Gvv~~I~p~N~P--~~~~~~~~~~AL~aGN~Vilkps~~~p~~~-~~l~~~l~~aglP~~vv~~v~g~~~~~~~~ 192 (457)
T cd07114 116 RREPLGVVAAITPWNSP--LLLLAKKLAPALAAGNTVVLKPSEHTPAST-LELAKLAEEAGFPPGVVNVVTGFGPETGEA 192 (457)
T ss_pred EEecceEEEEECCCccH--HHHHHHHHHHHHhcCCeEEeECCccchHHH-HHHHHHHHHcCcCCCcEEEEeCCCchHHHH
Confidence 47899999999 4443 3211 115666677 7777777776 99999983 4456676
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|-.+..+|.|..+||....+.|.+++. .+||+....|++++||++|||++.|++.++.+++.+-|- .|.++..+
T Consensus 193 l~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dAdl~~aa~~i~~~~~~~~GQ----~C~a~~~v 268 (457)
T cd07114 193 LVEHPLVAKIAFTGGTETGRHIARAAAENLAPVTLELGGKSPNIVFDDADLDAAVNGVVAGIFAAAGQ----TCVAGSRL 268 (457)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeEEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC----CCCCCceE
Confidence 666678999999999999999998762 489999999999999999999999999999999986554 56666555
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..++.|
T Consensus 269 ~V~~~v 274 (457)
T cd07114 269 LVQRSI 274 (457)
T ss_pred EEcHHH
Confidence 555544
No 114
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=99.10 E-value=9.3e-11 Score=125.43 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=98.9
Q ss_pred CCCceeeEEEEe-CCCCcccc------------------cccccccchHHHHH----hhcCCC----CeEEeecCHHHHH
Q psy11677 210 GTPVEVLAEIWK-NETLNTTV------------------PKKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEIS 262 (462)
Q Consensus 210 ~~PlGVi~~IyE-sr~~Pnv~------------------~~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~~ 262 (462)
+.|+||+++|++ .. |-.+ +.+++-.|+ ..++ +++.++ +++|+|.....+.
T Consensus 130 ~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~l~~~~~~~aglP~gv~~~v~g~~~~~ 206 (474)
T cd07130 130 WNPLGVVGVITAFNF--PVAVWGWNAAIALVCGNVVVWKPSPTTPLTA-IAVTKIVARVLEKNGLPGAIASLVCGGADVG 206 (474)
T ss_pred EecceeEEEEccCCC--HHHHHHHHhhHHHHcCCeEEeeCCccCHHHH-HHHHHHHHHHHHhcCCCCCcEEEEeCChhHH
Confidence 689999999987 44 6321 016666776 5555 566666 8999998433356
Q ss_pred HHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 263 DLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 263 ~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
+.|-.+..||+|.++||....+.|.+.+ -+.|+++.| |++++||++|||+++|++.+++++..+-| ..|.++
T Consensus 207 ~~L~~~~~vd~V~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~p~iV~~dadl~~Aa~~i~~~~~~~~G----Q~C~a~ 281 (474)
T cd07130 207 EALVKDPRVPLVSFTGSTAVGRQVGQAVAARFGRSLLELG-GNNAIIVMEDADLDLAVRAVLFAAVGTAG----QRCTTT 281 (474)
T ss_pred HHHhcCCCCCEEEEECchHHHHHHHHHHHhcCCCEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHhcCC----CCCcCC
Confidence 6666777899999999999999887653 124666655 99999999999999999999999998544 467776
Q ss_pred HHhhhccccc
Q psy11677 340 YNLADQGEMD 349 (462)
Q Consensus 340 ~~~~~~~~~~ 349 (462)
..+..|..|.
T Consensus 282 ~rv~V~~~i~ 291 (474)
T cd07130 282 RRLIVHESIY 291 (474)
T ss_pred eEEEEcHhHH
Confidence 6666666553
No 115
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=99.09 E-value=9.2e-11 Score=125.75 Aligned_cols=174 Identities=17% Similarity=0.100 Sum_probs=124.0
Q ss_pred HHHHHHhCCchhhcCchhcHHH---------HHHHHhhccccccccccCC---------------CCCCCCceeeEEEE-
Q psy11677 166 SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDASA---------------QSGGTPVEVLAEIW- 220 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~~d---------------~~~~~PlGVi~~Iy- 220 (462)
+++.|+++.++|..++..|.-+ +...++.++ ..+.+.+ ...+.|+||+++|+
T Consensus 77 ~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~~~---~~a~~a~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~P 153 (481)
T cd07143 77 LADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFR---YYGGWADKIHGQVIETDIKKLTYTRHEPIGVCGQIIP 153 (481)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH---HHHHHHHHhcCccccCCCCceEEEEEecceeEEEECC
Confidence 8889999998888877665321 333333333 2222110 12479999999998
Q ss_pred eCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeec
Q psy11677 221 KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 221 Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPr 277 (462)
+.. |-.+.- +++-.|+ ..+++.+.++ +++|+|. +...+.+.|-.+..||.|...
T Consensus 154 ~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~l~~aGlP~g~v~~v~g~~~~~~~~L~~~~~vd~V~fT 230 (481)
T cd07143 154 WNF--PLLMCAWKIAPALAAGNTIVLKPSELTPLSA-LYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDIDKVAFT 230 (481)
T ss_pred CcC--hHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHhcCcCcccEEEEeCCchhHHHHHhcCCCCCEEEEE
Confidence 445 754311 5555666 6667878776 8999998 345677777777889999999
Q ss_pred CChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhccccc
Q psy11677 278 GSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 278 G~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
||...-+.|.+.+. ..|+..-..|++++||++|||+++|++-+..++..+-|- .|.++..+..|+.|.
T Consensus 231 Gs~~~G~~i~~~aa~~~~~~~~lElGG~~p~iV~~dADl~~Aa~~i~~~~~~naGQ----~C~a~~rv~V~~~i~ 301 (481)
T cd07143 231 GSTLVGRKVMEAAAKSNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNHGQ----VCCAGSRIYVQEGIY 301 (481)
T ss_pred CchHHHHHHHHHHHHhcCCEEEeecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC----CCCCCcEEEEeHhHH
Confidence 99999988887542 246555555999999999999999999999998876553 666666666666653
No 116
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=99.07 E-value=1.9e-10 Score=121.97 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=100.7
Q ss_pred CCCCceeeEEE--EeCCCCccc---------------c--cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTT---------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv---------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++| |... +.. + +.+++-.|+ ..|++.|.++ +++|+|+ +.+. .+.
T Consensus 120 ~~~P~Gvv~~I~p~N~P--~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~l~~~l~~ag~P~g~v~~v~g~~~~-~~~ 195 (452)
T cd07147 120 RRFPIGPVSAITPFNFP--LNLVAHKVAPAIAAGCPFVLKPASRTPLSA-LILGEVLAETGLPKGAFSVLPCSRDD-ADL 195 (452)
T ss_pred EEeceeEEEEEcCCCcH--HHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHcCCCcCcEEEEeCCccc-hhH
Confidence 46899999999 5332 221 1 116777787 8888888776 9999998 4554 455
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
|-.+..+|+|..+||....+.|.+.+...||.....|++++||+++||+++|++-++.++..+-| ..|.+...+..
T Consensus 196 l~~~~~v~~v~fTGs~~~g~~v~~~a~~~~v~lelgG~~p~iV~~dadl~~aa~~i~~~~~~~~G----Q~C~a~~~v~V 271 (452)
T cd07147 196 LVTDERIKLLSFTGSPAVGWDLKARAGKKKVVLELGGNAAVIVDSDADLDFAAQRIIFGAFYQAG----QSCISVQRVLV 271 (452)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHhCcCceEeecCCCCcEEECCCCCHHHHHHHHHHHHHhccC----CCCcCCcEEEE
Confidence 55566799999999999999999875457998888899999999999999999988888876443 45666666655
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|+.|
T Consensus 272 ~~~i 275 (452)
T cd07147 272 HRSV 275 (452)
T ss_pred chhH
Confidence 5544
No 117
>PLN02551 aspartokinase
Probab=99.07 E-value=3.7e-10 Score=122.15 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=82.0
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..|+|+.+.++|||||||+.||+ .|+++.|+++++.|+.+++ .+|..-++++ +...+.+.+
T Consensus 256 GGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA-----~~GakVlhp~--ai~pa~~~~ 328 (521)
T PLN02551 256 GGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELA-----YFGAQVLHPQ--SMRPAREGD 328 (521)
T ss_pred ChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHH-----hCCCcccCHH--HHHHHHHCC
Confidence 6789999999999999999999999999999999 8999999999999999885 3555667775 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|..+|+ ..||+|...
T Consensus 329 Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 329 IPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred ceEEEEecCCCC---------CCCcEEecc
Confidence 999999988773 579999754
No 118
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=99.06 E-value=5.9e-11 Score=126.83 Aligned_cols=192 Identities=17% Similarity=0.130 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc-
Q psy11677 149 VEVLAENVNLKMEILVN--------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~--------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~- 204 (462)
+......||+|.+...| +++.|.++.++|..+...|.-. +..+++.++ ..+.+
T Consensus 43 v~~av~~A~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~---~~a~~~ 119 (476)
T cd07091 43 VDAAVKAARAAFETGWWRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLR---YYAGWA 119 (476)
T ss_pred HHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 55555666666554333 7888888888877765544311 223333333 22111
Q ss_pred ----------CC----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---
Q psy11677 205 ----------SA----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 205 ----------~d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~--- 249 (462)
+. ...+.|+|||++|-..- .|-. + +.+.+-.|+ ..+++.+.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~~~~AL~aGN~VvlKps~~~p~~~-~~l~~~~~~aglP 197 (476)
T cd07091 120 DKIQGKTIPIDGNFLAYTRREPIGVCGQIIPWN-FPLLMLAWKLAPALAAGNTVVLKPAEQTPLSA-LYLAELIKEAGFP 197 (476)
T ss_pred HHhcCccccCCCCceEEEEEeceeEEEEECCCc-CHHHHHHHHHHHHHHcCCEEEEeCCCCChHHH-HHHHHHHHHcCcC
Confidence 11 12489999999993211 1321 1 116666777 7777877776
Q ss_pred -CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHccc
Q psy11677 250 -PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGS 324 (462)
Q Consensus 250 -~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak 324 (462)
+++++|+. -+.+.+.|..+..+|.|...||...-+.|.+.+. ..||+.-..|++++||++|||++.|++.++.+|
T Consensus 198 ~g~~~~v~g~~~~~~~~L~~~~~vd~V~fTGs~~~g~~v~~~aa~~~~~~~~lElgG~~~~iV~~dADl~~Aa~~i~~~~ 277 (476)
T cd07091 198 PGVVNIVPGFGPTAGAAISSHMDVDKIAFTGSTAVGRTIMEAAAKSNLKKVTLELGGKSPNIVFDDADLDKAVEWAAFGI 277 (476)
T ss_pred CCcEEEEeCCChhHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHhcCCceEEEecCCCCeEEECCCCCHHHHHHHHHHHH
Confidence 89999983 4456666667778999999999999888887542 267877777999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHhhhccccc
Q psy11677 325 RVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
..+.|- .|.++..+..++.|.
T Consensus 278 ~~~~GQ----~C~a~~rv~V~~~v~ 298 (476)
T cd07091 278 FFNQGQ----CCCAGSRIFVQESIY 298 (476)
T ss_pred HhccCC----CCcCCcEEEEeHHHH
Confidence 997664 566666666665553
No 119
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=99.06 E-value=1.4e-10 Score=124.84 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=126.2
Q ss_pred HHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccccC----------C--CCCCCCceee
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDAS----------A--QSGGTPVEVL 216 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~~----------d--~~~~~PlGVi 216 (462)
.+++.|++++++|.++...|+-+ ++.+++.++ .+.... . ...+.|+||+
T Consensus 37 ~l~~~l~~~~~~i~~a~~~d~Gk~~~ea~~~Ev~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~PlGVV 113 (493)
T PTZ00381 37 NLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVLLTVAEIEHLLKHLD---EYLKPEKVDTVGVFGPGKSYIIPEPLGVV 113 (493)
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCcccCCccccCCCceEEEEecCcEE
Confidence 38888999999999888877633 444444444 332211 0 1248899999
Q ss_pred EEEEe-CCCCcc-c---------------ccc--cccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCccE
Q psy11677 217 AEIWK-NETLNT-T---------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHIDL 273 (462)
Q Consensus 217 ~~IyE-sr~~Pn-v---------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDl 273 (462)
++|.. .. |- . +.. ..+-+|+ ..+.+.+.++ +++++|+ +++....|++.. +|.
T Consensus 114 ~iI~PwN~--Pl~l~~~~l~~ALaaGN~VIlKPse~tp~t~-~~l~~ll~~~lp~~~v~vv~g~~~~~~~l~~~~--~d~ 188 (493)
T PTZ00381 114 LVIGAWNY--PLNLTLIPLAGAIAAGNTVVLKPSELSPHTS-KLMAKLLTKYLDPSYVRVIEGGVEVTTELLKEP--FDH 188 (493)
T ss_pred EEECCCch--HHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCcCEEEEecCCHHHHHHHHhCC--CCE
Confidence 99985 33 52 1 111 5666777 7777666655 9999998 677778888753 999
Q ss_pred EeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 274 IIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 274 iIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|..+||...-+.|.+.+. .+||.....|.+++||++|||+++|++.++.+|..+-| ..|.|...+..++.+
T Consensus 189 i~FTGS~~vG~~V~~~aa~~l~pv~lElGGk~p~iV~~dAdl~~Aa~~i~~g~~~naG----Q~C~A~~~vlV~~~i 261 (493)
T PTZ00381 189 IFFTGSPRVGKLVMQAAAENLTPCTLELGGKSPVIVDKSCNLKVAARRIAWGKFLNAG----QTCVAPDYVLVHRSI 261 (493)
T ss_pred EEEECCHHHHHHHHHHHHhcCCcEEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhhcC----CcCCCCCEEEEeHHH
Confidence 999999999888876642 48999999999999999999999999999999998644 356555555555554
No 120
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=99.06 E-value=2e-10 Score=123.12 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH-----H---HHHHHhhcc---------ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE-----A---IKQIVAGRK---------IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~-----~---~~~~~~~~~---------i~t 199 (462)
+......|++|.+.+.. +++.|.++.++|...-..|.- . +..+++.++ .|.
T Consensus 37 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~~g~ 116 (484)
T TIGR03240 37 VEAAVAAARAAFPAWARLSLEERIAVVQRFAALLEERKEALARVIARETGKPLWETRTEVASMIGKVAISIKAYHERTGE 116 (484)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55666667766654322 788888888777765444321 1 333333322 011
Q ss_pred cccccCC---CCCCCCceeeEEE--EeCC-CCcc------------cc-c-ccccccchHHHHHhhcCCC----CeEEee
Q psy11677 200 FFTDASA---QSGGTPVEVLAEI--WKNE-TLNT------------TV-P-KKHAKTSQCKYFTKMLPRY----PLHSQV 255 (462)
Q Consensus 200 ~~a~~~d---~~~~~PlGVi~~I--yEsr-~~Pn------------v~-~-~~ea~~sn~~~l~~al~~~----~~v~~v 255 (462)
.....+. ...+.|+||+++| |..- -+|. |+ + ...+-.|+ ..+++.+.++ +++|+|
T Consensus 117 ~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~t~-~~l~~~~~~aGlP~gvv~~v 195 (484)
T TIGR03240 117 SENPMPDGRAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVA-EETVKLWEKAGLPAGVLNLV 195 (484)
T ss_pred cccCCCCceeEEEEecccEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccccHHH-HHHHHHHHHhCcCcccEEEE
Confidence 1101111 0126799999999 4310 0011 11 1 15567777 7777777776 899999
Q ss_pred cCHHHHHHHhcCCCCccEEeecCChhH----HHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCC
Q psy11677 256 STREEISDLLSMEKHIDLIIPRGSSDL----VRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLN 331 (462)
Q Consensus 256 ~~r~~~~~ll~~~~~iDliIPrG~~~l----v~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~ 331 (462)
+....+.+.|-.+..||.|.++||..- .+.+..+-...++++.| |++++||++|||+++|++.++.+|..+-
T Consensus 196 ~g~~~~~~~L~~~~~vd~V~fTGS~~~G~~i~~~aa~~~~~~~~lElG-Gk~p~iV~~dADl~~aa~~i~~~~~~~~--- 271 (484)
T TIGR03240 196 QGARETGVALAAHPDIDGLLFTGSSNTGHLLHRQFAGRPEKILALEMG-GNNPLIVDEVADIDAAVHLIIQSAFISA--- 271 (484)
T ss_pred eCCHHHHHHHhcCCCCCEEEEECCHHHHHHHHHHhhhcCCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHHhcC---
Confidence 954445666666778999999999994 44433332224578888 9999999999999999999999998754
Q ss_pred CchhHHHHHHhhhcccc
Q psy11677 332 PEDRAKAIYNLADQGEM 348 (462)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (462)
...|.+...+..|+.+
T Consensus 272 -GQ~C~a~~rv~V~~~~ 287 (484)
T TIGR03240 272 -GQRCTCARRLLVPDGA 287 (484)
T ss_pred -CCCCcCCcEEEEeccc
Confidence 4467776666666554
No 121
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=99.06 E-value=2.3e-10 Score=121.49 Aligned_cols=133 Identities=18% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeecC--HHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVST--REEISD 263 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~ 263 (462)
++.|+||+++|+. .. |-.+. ...+-.|+ ..+++.+.++ +++++|+. ...+.+
T Consensus 114 ~~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~ 190 (448)
T TIGR01780 114 IKQPVGVCAAITPWNF--PAAMITRKAGAALAAGCTVVVKPAEQTPLSA-LALARLAEQAGIPKGVLNVITGSRAKEVGK 190 (448)
T ss_pred EEeeeeEEEEEcCCCh--HHHHHHHHHHHHHHcCCeEeeECCccchHHH-HHHHHHHHHcCCCccceEEEeCCCchHHHH
Confidence 4699999999997 44 65322 16667777 7777777776 89999983 466767
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.|-.+..||.|..+||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+.|- .|.++..
T Consensus 191 ~l~~~~~i~~v~ftGs~~~g~~v~~~aa~~~~~~~lElGGk~~~iV~~dadl~~aa~~iv~~~f~~sGQ----~C~a~~r 266 (448)
T TIGR01780 191 VLCTSPLVRKISFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFDDADIDQAVEGAMASKFRNAGQ----TCVCANR 266 (448)
T ss_pred HHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCceEeecCCCCeeEECCCCCHHHHHHHHHHHHHHhcCC----cccCCce
Confidence 7767778999999999999999888653 368877777999999999999999999999999987655 4555555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..+..|
T Consensus 267 v~V~~~i 273 (448)
T TIGR01780 267 LYVHDGI 273 (448)
T ss_pred eechHHH
Confidence 5555443
No 122
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=99.03 E-value=5.8e-10 Score=118.49 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccc-------c---CC--CCCCCCce
Q psy11677 163 LVNSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTD-------A---SA--QSGGTPVE 214 (462)
Q Consensus 163 L~~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~-------~---~d--~~~~~PlG 214 (462)
|..+++.|+++.++|.+++.+|..+ ++..++.++ .+.. . .. ...+.|+|
T Consensus 26 L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~G 102 (443)
T cd07132 26 LEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEILLVKNEIKYAISNLP---EWMKPEPVKKNLATLLDDVYIYKEPLG 102 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCccCCCccccCCCceEEEEeccc
Confidence 4448888999999988888776543 233333333 2211 0 00 12378999
Q ss_pred eeEEEEe-CCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCc
Q psy11677 215 VLAEIWK-NETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHI 271 (462)
Q Consensus 215 Vi~~IyE-sr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~i 271 (462)
|+++|++ .. |-. + +.+.+..|+ ..+.+.+.++ +++++++ +.+....|++. .|
T Consensus 103 Vv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~~~~~-~~l~~~~~~~lp~gv~~vv~g~~~~~~~l~~~--~v 177 (443)
T cd07132 103 VVLIIGAWNY--PLQLTLVPLVGAIAAGNCVVIKPSEVSPATA-KLLAELIPKYLDKECYPVVLGGVEETTELLKQ--RF 177 (443)
T ss_pred EEEEEcCCch--hHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCcCeEEEEeCCHHHHHHHHhC--CC
Confidence 9999997 44 621 1 116667777 7777666555 9999998 57778888863 59
Q ss_pred cEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 272 DLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 272 DliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|.|.++||....+.|.+.+. ..||+....|++++||++|||++.|++-++.++..+.|- .|.+...+..|+.|
T Consensus 178 d~V~fTGs~~~g~~i~~~a~~~~~~~~lElgG~~p~iV~~dADl~~aa~~i~~~~f~~~GQ----~C~a~~rv~V~~~i 252 (443)
T cd07132 178 DYIFYTGSTSVGKIVMQAAAKHLTPVTLELGGKSPCYVDKSCDIDVAARRIAWGKFINAGQ----TCIAPDYVLCTPEV 252 (443)
T ss_pred CEEEEECChHHHHHHHHHHHhhCCceEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCC----ceeCCcEEEEcHHH
Confidence 99999999999888766541 489999999999999999999999999999999997765 45555555555444
No 123
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=99.03 E-value=7.5e-10 Score=117.39 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH-----H----------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE-----A----------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~-----~----------~~~~~~~~~i~t~~ 201 (462)
+++....|++|...... +++.|..+.+++.+....|.- . ++.++...+ .+
T Consensus 23 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~---~~ 99 (451)
T cd07150 23 AERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGECR---RV 99 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55556666666554332 888888888888776555431 1 333333222 21
Q ss_pred cc--cCC-------CCCCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----C
Q psy11677 202 TD--ASA-------QSGGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 202 a~--~~d-------~~~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~ 250 (462)
.. ++. ...+.|+||+++|+..- .|-.+. ..++..|+ ..|.+.+.++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~t~-~~l~~~~~~ag~P~g 177 (451)
T cd07150 100 RGETLPSDSPGTVSMSVRRPLGVVAGITPFN-YPLILATKKVAFALAAGNTVVLKPSEETPVIG-LKIAEIMEEAGLPKG 177 (451)
T ss_pred cCccccCCCCCceeEEEEecccEEEEECCCc-cHHHHHHHHHHHHHhcCCeEEEECCccCcHHH-HHHHHHHHHhCCCcC
Confidence 11 111 13489999999998522 254211 15677777 7777777776 8
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+. ...+.+.|-.+..||.|..+||...-+.|.+.+. ..| +++.| |++++||++|||++.|++.++.++..
T Consensus 178 ~v~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~aa~~~~~~~lelG-G~~~~iV~~dadl~~aa~~i~~~~~~ 256 (451)
T cd07150 178 VFNVVTGGGAEVGDELVDDPRVRMVTFTGSTAVGREIAEKAGRHLKKITLELG-GKNPLIVLADADLDYAVRAAAFGAFM 256 (451)
T ss_pred cEEEeeCCCcHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCceEeecC-CCCeeEECCCCChHHHHHHHHHHHHh
Confidence 9999994 5567777777778999999999986555543321 234 55665 99999999999999999999999887
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+-|- .|.+...+..+..+
T Consensus 257 ~~GQ----~C~a~~rv~V~~~i 274 (451)
T cd07150 257 HQGQ----ICMSASRIIVEEPV 274 (451)
T ss_pred hcCC----CCCCCeeEEEcHHH
Confidence 5443 55555555544443
No 124
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=99.01 E-value=3.9e-10 Score=116.03 Aligned_cols=119 Identities=23% Similarity=0.208 Sum_probs=95.1
Q ss_pred CCCCceeeEEEEeCCCCccc-cc-----------------ccccccchHHHHHhhcCCC----CeEEeecC--HHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTT-VP-----------------KKHAKTSQCKYFTKMLPRY----PLHSQVST--REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv-~~-----------------~~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~l 264 (462)
.+.|+||+++|+... .|-. .. .+.+..++ ..+++.|.++ +++++++. ++....|
T Consensus 89 ~~~p~Gvv~~i~p~n-~p~~~~~~~~~~aL~~GN~vilk~s~~~~~~~-~~l~~~l~~ag~p~~~v~~~~~~~~~~~~~l 166 (367)
T cd06534 89 RREPLGVVGVITPWN-FPLLLAAWKLAPALAAGNTVVLKPSELTPLTA-LALAELLQEAGLPPGVVNVVPGGGDEVGAAL 166 (367)
T ss_pred EEEeeeEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHhcCCCcCeEEEEEcCchhHHHHH
Confidence 378999999999876 3422 01 15666777 7777777776 89999983 3345556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+... .||.|+..||...++.|.+.+. .+|++.++.|++++||+++||+++|++.+.++++.+-|-
T Consensus 167 ~~~~-~vd~v~~tGs~~~~~~v~~~~~~~~~~~~~e~~g~~~~iV~~~ad~~~aa~~i~~~~~~~~gq 233 (367)
T cd06534 167 LSHP-RVDKISFTGSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQ 233 (367)
T ss_pred hcCC-CcCEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 6555 5999999999999999887653 389999999999999999999999999999999987554
No 125
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=99.01 E-value=7.9e-10 Score=118.63 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcC----chhcHHH-----HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVIC----NGMQKEA-----IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~A----N~~D~~~-----~~~~~~~~~i~t~~a~~--- 204 (462)
+......|+++.+.+.. +++.|.++.++|... +.+.+.. +...+..++ .-+..
T Consensus 61 v~~ai~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~---~~~~~~~~ 137 (480)
T cd07111 61 VDAAVAAARTAFESWSALPGHVRARHLYRIARHIQKHQRLFAVLESLDNGKPIRESRDCDIPLVARHFY---HHAGWAQL 137 (480)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554322 788888888777432 4344321 111111111 11111
Q ss_pred --CCCCCCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeecCHHH
Q psy11677 205 --SAQSGGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVSTREE 260 (462)
Q Consensus 205 --~d~~~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~ 260 (462)
.....+.|+||+++|-..- .|-.+ +...+..|+ ..+++.+.++ +++|+|+....
T Consensus 138 ~~~~~~~~~P~GVV~~I~PwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~ 215 (480)
T cd07111 138 LDTELAGWKPVGVVGQIVPWN-FPLLMLAWKICPALAMGNTVVLKPAEYTPLTA-LLFAEICAEAGLPPGVLNIVTGNGS 215 (480)
T ss_pred hcCCcccceecceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHhcCCCcccEEEEeCCch
Confidence 0123478999999993111 13111 116667777 7777888877 89999984334
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
+.+.|-.+..+|.|...||....+.|.+.+ +..| +++.| |++++||+++||+++|++.++.++..+-|- .|.
T Consensus 216 ~~~~l~~~~~v~~v~ftGs~~~g~~v~~~aa~~~~~~~lElG-Gk~p~iV~~daDl~~aa~~i~~~~f~~~GQ----~C~ 290 (480)
T cd07111 216 FGSALANHPGVDKVAFTGSTEVGRALRRATAGTGKKLSLELG-GKSPFIVFDDADLDSAVEGIVDAIWFNQGQ----VCC 290 (480)
T ss_pred HHHHHhcCCCcCEEEEECCHHHHHHHHHHHhccCCcEEEEcC-CCceEEECCCCCHHHHHHHHHHHHHhcCCC----cCc
Confidence 566666677899999999999999988764 1244 56666 999999999999999999999999986444 455
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
+...+..+..|
T Consensus 291 a~~ri~V~~~i 301 (480)
T cd07111 291 AGSRLLVQESV 301 (480)
T ss_pred CCceEEEcHHH
Confidence 55555444443
No 126
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=99.01 E-value=7.6e-10 Score=117.91 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=99.0
Q ss_pred CCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHH----hhcCCC----CeEEeecCHHHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEISD 263 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~~~ 263 (462)
+.|+||+++|+..- .|-. + +...+.+|+ ..++ ++|.++ +++|+|+...++.+
T Consensus 118 ~~P~GVv~~I~p~n-~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~~~~~~~~~l~~aGlP~gvv~~v~g~~~~~~ 195 (465)
T cd07098 118 YEPLGVVGAIVSWN-YPFHNLLGPIIAALFAGNAIVVKVSEQVAWSS-GFFLSIIRECLAACGHDPDLVQLVTCLPETAE 195 (465)
T ss_pred EecceeEEEEcccC-cHHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHHHHHhcCCCCCeEEEEECCHHHHH
Confidence 58999999998632 2421 1 115566666 5544 666666 99999994335666
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.|-.+..||.|.++||...-++|.+.+ +.+||+.-..|++++||+++||+++|++.++++++.+.|- .|.++..
T Consensus 196 ~L~~~~~v~~V~ftGs~~~g~~v~~~a~~~~~~~~lelgG~~~~iV~~dadl~~a~~~i~~~~~~~~GQ----~C~a~~r 271 (465)
T cd07098 196 ALTSHPVIDHITFIGSPPVGKKVMAAAAESLTPVVLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQ----NCIGIER 271 (465)
T ss_pred HHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CCcCCcE
Confidence 666777899999999999888877743 2589999999999999999999999999999999998875 3555444
Q ss_pred hhhccc
Q psy11677 342 LADQGE 347 (462)
Q Consensus 342 ~~~~~~ 347 (462)
+..+..
T Consensus 272 v~V~~~ 277 (465)
T cd07098 272 VIVHEK 277 (465)
T ss_pred EEEcHH
Confidence 444443
No 127
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=99.00 E-value=7.1e-10 Score=117.51 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH---------HHHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE---------AIKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~---------~~~~~~~~~~i~t~~a~~--- 204 (462)
+......|++|...... +++.|.++.++|..+...|.- .+...++.++ ..+.+
T Consensus 21 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~i~~~~---~~~~~~~~ 97 (450)
T cd07092 21 VDAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHLVRDDELPGAVDNFR---FFAGAART 97 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44555566665543332 788888888888776654321 1222333222 11111
Q ss_pred ----------CC---CCCCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC---
Q psy11677 205 ----------SA---QSGGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 205 ----------~d---~~~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~--- 249 (462)
+. ...+.|+|||++|+. .. |-.+. .+.+-.|+ ..+++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~--P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~-~~l~~~~~~glP~ 174 (450)
T cd07092 98 LEGPAAGEYLPGHTSMIRREPIGVVAQIAPWNY--PLMMAAWKIAPALAAGNTVVLKPSETTPLTT-LLLAELAAEVLPP 174 (450)
T ss_pred hcCcccCccCCCceeEEEEeccceEEEECCCCc--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHhcCCc
Confidence 10 124799999999987 34 74321 15666677 7777665554
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|. +.+.+.+.|-.+..+|.|...||....+.|.+.+. ..|++.-..|++++||++|||+++|++.++.++..
T Consensus 175 g~~~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~v~~~a~~~~~~~~lelgG~~p~iV~~dAdl~~aa~~iv~~~~~ 254 (450)
T cd07092 175 GVVNVVCGGGASAGDALVAHPRVRMVSLTGSVRTGKKVARAAADTLKRVHLELGGKAPVIVFDDADLDAAVAGIATAGYY 254 (450)
T ss_pred ccEEEeecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHh
Confidence 9999998 45556666656667999999999999998888653 36887778999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGE 347 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~ 347 (462)
+-|- .|.++..+..++.
T Consensus 255 ~~GQ----~C~a~~~v~V~~~ 271 (450)
T cd07092 255 NAGQ----DCTAACRVYVHES 271 (450)
T ss_pred hCCC----CCCCCcEEEEeHH
Confidence 7665 4444444444433
No 128
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=98.99 E-value=5e-10 Score=118.76 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=98.9
Q ss_pred CCCCceeeEEEEe-CCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+||+++|+. .. |..+.- +++-.+. ..+++.+.++ +++++|+. .+....|
T Consensus 116 ~~~P~Gvv~~I~p~N~--P~~~~~~~l~~ALaaGN~vilKps~~~p~~~-~~l~~~l~~ag~P~g~~~vv~g~~~~~~~l 192 (453)
T cd07099 116 EYRPYGVVGVISPWNY--PLLTPMGDIIPALAAGNAVVLKPSEVTPLVG-ELLAEAWAAAGPPQGVLQVVTGDGATGAAL 192 (453)
T ss_pred EEecceEEEEECCCCh--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCCCCCeEEEEeCCchHHHHH
Confidence 4789999999986 44 653211 4555666 6666777776 99999983 4555556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
++ + .||.|..+||....+.|.+.+. .+||+....|++++||++|||+++|++.+++++..+-|- .|.+...+
T Consensus 193 ~~-~-~vd~V~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dadl~~a~~~i~~~~~~~~GQ----~C~a~~ri 266 (453)
T cd07099 193 ID-A-GVDKVAFTGSVATGRKVMAAAAERLIPVVLELGGKDPMIVLADADLERAAAAAVWGAMVNAGQ----TCISVERV 266 (453)
T ss_pred hc-C-CCCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCcEE
Confidence 65 3 4999999999999888877552 479998888999999999999999999999999986654 45554444
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|+.|
T Consensus 267 ~V~~~i 272 (453)
T cd07099 267 YVHESV 272 (453)
T ss_pred EEcHHH
Confidence 444443
No 129
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.99 E-value=1e-09 Score=124.17 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=80.8
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..|+|+.+.+||||||||++||+ .|+|++|+++++.|+.+++ ..|..-++++ +...+.+.+
T Consensus 208 GGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela-----~~GakVlHp~--ti~pa~~~~ 280 (810)
T PRK09466 208 NGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELA-----RLAAPVLHAR--TLQPVSGSD 280 (810)
T ss_pred ChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHH-----HcCccccCHH--HHHHHHHcC
Confidence 6789999999999999999999999999999999 8999999999999999885 3455557775 677889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|+++|.|..+|+ ..||+|..
T Consensus 281 Ipi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 281 IDLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred CeEEEecCCCCC---------CCceEEec
Confidence 999999988773 45898865
No 130
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=98.98 E-value=4e-10 Score=119.90 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=95.7
Q ss_pred CCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+|||++| |... .+.... +++-.|+ ..+++.+.++ +++++|. +.+ +.+.
T Consensus 121 ~~~P~Gvv~~I~p~N~P--~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~-~~~~ 196 (455)
T cd07148 121 TREPIGVVVAISAFNHP--LNLIVHQVAPAIAAGCPVIVKPALATPLSC-LAFVDLLHEAGLPEGWCQAVPCENA-VAEK 196 (455)
T ss_pred EEecceEEEEECCCCcH--HHHHHHHHHHHHHcCCEEEeeCCCcccHHH-HHHHHHHHHcCCCcCcEEEEeCChH-HHHH
Confidence 47899999999 6555 432111 6777888 8888777776 8999998 555 4566
Q ss_pred hcCCCCccEEeecCChhH----HHHHHhhCCCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDL----VRSIQQKSQHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~l----v~~v~~~s~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
|-.+..||+|.+.||..- .+.... +.| ++++| |++++||++|||+++|++.++.++..+-| ..|.+.
T Consensus 197 L~~~~~v~~v~fTGs~~~G~~i~~~aa~---~~~~~lElG-G~~p~iV~~dADl~~aa~~i~~~~f~~~G----Q~C~a~ 268 (455)
T cd07148 197 LVTDPRVAFFSFIGSARVGWMLRSKLAP---GTRCALEHG-GAAPVIVDRSADLDAMIPPLVKGGFYHAG----QVCVSV 268 (455)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHhhc---CCcEEEecC-CCCceEECCCCCHHHHHHHHHHHHHhcCC----CCccCC
Confidence 667778999999999974 343332 245 66777 99999999999999999999999998654 356666
Q ss_pred HHhhhcccc
Q psy11677 340 YNLADQGEM 348 (462)
Q Consensus 340 ~~~~~~~~~ 348 (462)
..+..|..|
T Consensus 269 ~rv~V~~~i 277 (455)
T cd07148 269 QRVFVPAEI 277 (455)
T ss_pred eEEEEcHhH
Confidence 666555554
No 131
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=98.98 E-value=3.9e-10 Score=121.63 Aligned_cols=192 Identities=12% Similarity=0.099 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|++|...... +++.|.++.++|...-..|.-+ +..+++.++ ..+...
T Consensus 76 v~~av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~---~~a~~~~~~ 152 (500)
T TIGR01238 76 VQAAIDSAQQAFPTWNATPAKERAAKLDRLADLLELHMPELMALCVREAGKTIHNAIAEVREAVDFCR---YYAKQVRDV 152 (500)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556666666653322 7777777777664433222211 333344443 222221
Q ss_pred -CCCCCCCceeeEEEEeCCCCccccc---------------ccccccchH--HHHHhhcCCC----CeEEeecC-HHHHH
Q psy11677 206 -AQSGGTPVEVLAEIWKNETLNTTVP---------------KKHAKTSQC--KYFTKMLPRY----PLHSQVST-REEIS 262 (462)
Q Consensus 206 -d~~~~~PlGVi~~IyEsr~~Pnv~~---------------~~ea~~sn~--~~l~~al~~~----~~v~~v~~-r~~~~ 262 (462)
....+.|+||+++|-..- .|-.+. =|.+-++.. ..+++.+.++ +.+|+|+. ...+.
T Consensus 153 ~~~~~~~P~GVV~~I~pwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~ 231 (500)
T TIGR01238 153 LGEFSVESRGVFVCISPWN-FPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQLLPGRGADVG 231 (500)
T ss_pred cCceeccCcceEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEeCCCCccHHHHHHHHHHHHcCCCCCceEEEecCcchHH
Confidence 123489999999995322 232110 033333331 4444777776 99999984 33556
Q ss_pred HHhcCCCCccEEeecCChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 263 DLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 263 ~ll~~~~~iDliIPrG~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
+.|-.+..||.|.++||....++|.+.+. .+||+....|++++||+++||+++|++.++.++..+-|= .|.
T Consensus 232 ~~l~~~~~v~~V~ftGs~~~g~~v~~~aa~~~~~~~~v~lElGGknp~IV~~dAdld~Aa~~i~~~~f~nsGQ----~C~ 307 (500)
T TIGR01238 232 AALTSDPRIAGVAFTGSTEVAQLINQTLAQREDAPVPLIAETGGQNAMIVDSTALPEQVVRDVLRSAFDSAGQ----RCS 307 (500)
T ss_pred HHHhcCCCcCeEEEECCHHHHHHHHHHHhhcccCCceEEEecCCcCcEEECCCCCHHHHHHHHHHHHHhcCCC----CCC
Confidence 66656778999999999999999987442 179999999999999999999999999999999987664 466
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
++..+..|+.|
T Consensus 308 a~~rv~V~~~i 318 (500)
T TIGR01238 308 ALRVLCVQEDV 318 (500)
T ss_pred CCceeEEcHhh
Confidence 66666666555
No 132
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=98.98 E-value=5.2e-10 Score=118.81 Aligned_cols=194 Identities=18% Similarity=0.129 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcc---------cc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRK---------IG 198 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~---------i~ 198 (462)
++.....|++|...... +++.|.++.++|..++..|.-. +...++.++ .|
T Consensus 21 v~~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~i~~l~~~~~~~~~~~g 100 (453)
T cd07115 21 VDAAVAAARAAFEAWSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRAARRLDVPRAADTFRYYAGWADKIEG 100 (453)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55556666666554333 8888888888888776554321 112222222 01
Q ss_pred ccccccCC---CCCCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEE
Q psy11677 199 TFFTDASA---QSGGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 199 t~~a~~~d---~~~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
..+...+. ...+.|+||+++|+..- .|-.+ +.+.+-.|+ ..+++.+.++ ++++
T Consensus 101 ~~~~~~~~~~~~~~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~-~~l~~~~~~aGlP~~~~~ 178 (453)
T cd07115 101 EVIPVRGPFLNYTVREPVGVVGAIVPWN-FPLMFAAWKVAPALAAGNTVVLKPAELTPLSA-LRIAELMAEAGFPAGVLN 178 (453)
T ss_pred ceecCCCCceEEEEecceeEEEEEcCCC-CHHHHHHHHHHHHHhcCCEEEEECCCCCcHHH-HHHHHHHHhcCcCchheE
Confidence 11000000 13478999999998322 34211 116667777 7777877776 8999
Q ss_pred eecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+|+. .+.+.+.|-.+..||.|.++||....+.|.+.+. .+||..-..|+..+||++|||+++|++.++.+|+.+-|-
T Consensus 179 ~v~g~~~~~~~~l~~~~~id~v~fTGs~~~g~~v~~~aa~~~~~~~lElgG~~p~iV~~dAdl~~aa~~i~~~~~~~~GQ 258 (453)
T cd07115 179 VVTGFGEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAAGNLKRVSLELGGKSANIVFADADLDAAVRAAATGIFYNQGQ 258 (453)
T ss_pred EEecCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCeEEEecCCCCceEECCCCCHHHHHHHHHHHHHhccCC
Confidence 9983 3456666666678999999999999999987653 256554444999999999999999999999999986544
Q ss_pred CCchhHHHHHHhhhcccc
Q psy11677 331 NPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (462)
.|.++..+..++.|
T Consensus 259 ----~C~a~~~v~V~~~i 272 (453)
T cd07115 259 ----MCTAGSRLLVHESI 272 (453)
T ss_pred ----CCCCCeEEEEcHHH
Confidence 55555555555544
No 133
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=98.97 E-value=1.8e-09 Score=114.80 Aligned_cols=133 Identities=21% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+|||++|.. .. |-.+. ...+-.|+ ..+++.+.++ +++++|+. .+.+.+.
T Consensus 117 ~~~P~GVV~~I~p~N~--P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~ 193 (456)
T cd07110 117 RREPVGVVGLITPWNF--PLLMAAWKVAPALAAGCTVVLKPSELTSLTE-LELAEIAAEAGLPPGVLNVVTGTGDEAGAP 193 (456)
T ss_pred EEecceeEEEECCCCh--HHHHHHHHHHHHHHcCCEEEEECcccchHHH-HHHHHHHHHcCCCCCcEEEEecCchHHHHH
Confidence 4889999999986 33 64321 16666777 7777777777 89999983 4556666
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|-.+..||.|...||...-+.|.+.+. ..||+....|++++||+++||+++|++.++.++..+-|- .|.++..+
T Consensus 194 L~~~~~v~~V~fTGs~~~g~~v~~~aa~~~~~~~lElgG~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv 269 (456)
T cd07110 194 LAAHPGIDKISFTGSTATGSQVMQAAAQDIKPVSLELGGKSPIIVFDDADLEKAVEWAMFGCFWNNGQ----ICSATSRL 269 (456)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHHhhcCCeEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCceE
Confidence 666778999999999998877766541 379998889999999999999999999999999886554 55555555
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..+..|
T Consensus 270 ~V~~~i 275 (456)
T cd07110 270 LVHESI 275 (456)
T ss_pred EEcHHH
Confidence 444443
No 134
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=98.97 E-value=6.5e-10 Score=120.45 Aligned_cols=190 Identities=14% Similarity=0.048 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------H-------HHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------I-------KQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~-------~~~~~~~~--i~t 199 (462)
+......|++|.+.... +++.|.++.+++..++..|.-. + +..+..++ .+.
T Consensus 56 v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~ 135 (524)
T PRK09407 56 VEAAFARARAAQRAWAATPVRERAAVLLRFHDLVLENREELLDLVQLETGKARRHAFEEVLDVALTARYYARRAPKLLAP 135 (524)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 55556666666654333 8888988888888777665532 1 11111111 000
Q ss_pred c-cc-ccCC----CCCCCCceeeEEEEe-CCCCcc-ccc-----------------ccccccchHHHHHhhcCCC----C
Q psy11677 200 F-FT-DASA----QSGGTPVEVLAEIWK-NETLNT-TVP-----------------KKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 200 ~-~a-~~~d----~~~~~PlGVi~~IyE-sr~~Pn-v~~-----------------~~ea~~sn~~~l~~al~~~----~ 250 (462)
+ +. ..+. ...+.|+|||++|+. .. |- .+. ...+-.|+ ..+++.+.++ +
T Consensus 136 ~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~--Pl~~~~~~~~~ALaaGN~VIlKPs~~tp~~~-~~l~~ll~eaGlP~g 212 (524)
T PRK09407 136 RRRAGALPVLTKTTELRQPKGVVGVISPWNY--PLTLAVSDAIPALLAGNAVVLKPDSQTPLTA-LAAVELLYEAGLPRD 212 (524)
T ss_pred ccccccCCCCceEEEEEecceEEEEEeCCCC--hHHHHHHHHHHHHHcCCEEEEECCCCCHHHH-HHHHHHHHHcCCCcc
Confidence 0 00 0110 124799999999987 44 62 111 16666777 7777877776 9
Q ss_pred eEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ +++....|++ .+|.|...||.+..+.|.+++. -+||.....|++++||++|||+++|++.++.++..
T Consensus 213 vv~~v~g~~~~~~~~L~~---~~d~V~fTGs~~~g~~v~~~aa~~~~~v~lElGGknp~iV~~dADl~~Aa~~i~~~~f~ 289 (524)
T PRK09407 213 LWQVVTGPGPVVGTALVD---NADYLMFTGSTATGRVLAEQAGRRLIGFSLELGGKNPMIVLDDADLDKAAAGAVRACFS 289 (524)
T ss_pred cEEEEecCCchHHHHHHh---cCCEEEEECCHHHHHHHHHHHHhcCCcEEEECCCCceeEECCCCCHHHHHHHHHHHHHh
Confidence 999998 3566666775 3899999999999999888652 38999999999999999999999999999999988
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+-|- .|.+...+..+..|
T Consensus 290 ~sGQ----~C~a~~rv~V~~~v 307 (524)
T PRK09407 290 NAGQ----LCISIERIYVHESI 307 (524)
T ss_pred cCCC----CCCCCcEEEEcHHH
Confidence 6544 45555555444443
No 135
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=98.97 E-value=7.1e-10 Score=118.67 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=122.7
Q ss_pred HHHHHHhCCchhhcCchhcH----HH-----HHHHHhhccccccccc---------cC-C-----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQK----EA-----IKQIVAGRKIGTFFTD---------AS-A-----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~----~~-----~~~~~~~~~i~t~~a~---------~~-d-----~~~~~PlGVi~~IyE 221 (462)
+++.|.++.++|......|. .. +...++.++ ..+. ++ . ...+.|+||+++|..
T Consensus 74 ~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~---~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~p 150 (476)
T cd07142 74 FADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFR---YYAGWADKIHGMTLPADGPHHVYTLHEPIGVVGQIIP 150 (476)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHHHHhcCcccccCCCceEEEEEeceeeEEEECC
Confidence 78888888888877766652 11 222222222 1111 11 1 124799999999986
Q ss_pred CCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeecC
Q psy11677 222 NETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPRG 278 (462)
Q Consensus 222 sr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG 278 (462)
.- .|-.+.- ..+-.++ ..+++.+.++ +.+++|+. .+.+.+.|..+..||.|...|
T Consensus 151 wN-~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~~v~~v~fTG 228 (476)
T cd07142 151 WN-FPLLMFAWKVGPALACGNTIVLKPAEQTPLSA-LLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHMDVDKVAFTG 228 (476)
T ss_pred Cc-cHHHHHHHHHHHHHHcCCEEEEECCCcccHHH-HHHHHHHHHcCcCcccEEEEeCCchhHHHHHhcCCCCCEEEEEC
Confidence 22 2643211 5556677 7777888776 89999994 566788887888899999999
Q ss_pred ChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 279 SSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 279 ~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|...-+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+-|- .|.+...+..+..|
T Consensus 229 s~~~G~~v~~~aa~~~~~~v~lElgGk~p~iV~~dADl~~Aa~~i~~~~f~~aGQ----~C~a~~rv~V~~~i 297 (476)
T cd07142 229 STEVGKIIMQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQ----CCCAGSRTFVHESI 297 (476)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEECCCCCeeEECCCCCHHHHHHHHHHHHhcCCCC----CCCCCeeEEEeHHH
Confidence 9998888877542 379999999999999999999999999999999886444 55555555554443
No 136
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=98.95 E-value=7.4e-10 Score=116.33 Aligned_cols=163 Identities=16% Similarity=0.145 Sum_probs=113.7
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcc----ccccccc---cCC------CCCCCCceeeEEEEeCCC
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRK----IGTFFTD---ASA------QSGGTPVEVLAEIWKNET 224 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~----i~t~~a~---~~d------~~~~~PlGVi~~IyEsr~ 224 (462)
+++.|..+.+.+..++..|.-. +..+++.++ ....+.. .+. ...+.|+||+++|+...
T Consensus 29 ~~~~l~~~~~~l~~~~~~etG~~~~~~~~ei~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N- 107 (432)
T cd07078 29 LADLLEERREELAALETLETGKPIEEALGEVARAADTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWN- 107 (432)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCceEEEEEeecceEEEECCCc-
Confidence 7788888888887776655321 222233222 0001110 110 12378999999998743
Q ss_pred Cccc-cc-----------------ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeecCChh
Q psy11677 225 LNTT-VP-----------------KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSD 281 (462)
Q Consensus 225 ~Pnv-~~-----------------~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~ 281 (462)
.|-. +. .+.+..+. ..+++.|.++ +++++++ +.+.+.+.|-...++|.|+..||..
T Consensus 108 ~P~~~~~~~~~~AL~aGN~vilkps~~~~~~~-~~l~~~l~~ag~p~~~~~~~~~~~~~~~~~l~~~~~i~~v~ftGs~~ 186 (432)
T cd07078 108 FPLLLAAWKLAPALAAGNTVVLKPSELTPLTA-LLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDKISFTGSTA 186 (432)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCCCcCcEEEEecCchHHHHHHhcCCCCCEEEEECcHH
Confidence 3621 11 16667777 7777777776 8999998 3443555444556799999999999
Q ss_pred HHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 282 LVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 282 lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
..+.|.+.+. ..|++.+..|++++||+++||++.|++-+.++++.+-|-
T Consensus 187 ~~~~v~~~a~~~~~~~~~e~gg~~~~iV~~~ad~~~aa~~i~~~~~~~~Gq 237 (432)
T cd07078 187 VGKAIMRAAAENLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAGQ 237 (432)
T ss_pred HHHHHHHHHhhccCcEEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 9888877663 389999999999999999999999999999999997665
No 137
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=98.93 E-value=2.2e-09 Score=114.06 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=106.6
Q ss_pred CCCCceeeEEE-EeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHH
Q psy11677 209 GGTPVEVLAEI-WKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TRE 259 (462)
Q Consensus 209 ~~~PlGVi~~I-yEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~ 259 (462)
.+.|+||+++| .+.. |..+.- ..+-.|+ ..++ ++|.++ +++|+|+ +++
T Consensus 92 ~~~P~GVv~~I~pwN~--P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~-~~~~~~~~~~l~eaG~P~g~v~~v~g~~~~ 168 (436)
T cd07122 92 IAEPVGVIAALIPSTN--PTSTAIFKALIALKTRNAIIFSPHPRAKKCS-IEAAKIMREAAVAAGAPEGLIQWIEEPSIE 168 (436)
T ss_pred EeecccEEEEEeCCCC--chHHHHHHHHHHHHcCCcEEEECCcchhhHH-HHHHHHHHHHHHHcCCCchhEEEecCCChH
Confidence 47999999966 6777 864322 5556666 5655 555565 8999998 356
Q ss_pred HHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 260 ~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
....|++.+ .||.|...||....+...++ ..|++..+.|++++||++|||+++|++.+++++..+.|- .|.++
T Consensus 169 ~~~~l~~~~-~v~~v~ftGs~~v~~~a~~~--~~~~~~elgG~~p~iV~~dADl~~A~~~i~~~~f~~~GQ----~C~a~ 241 (436)
T cd07122 169 LTQELMKHP-DVDLILATGGPGMVKAAYSS--GKPAIGVGPGNVPAYIDETADIKRAVKDIILSKTFDNGT----ICASE 241 (436)
T ss_pred HHHHHHcCC-CcCEEEEcCCHHHHHHHHhc--CCCEEEecCCCCeEEEcCCCCHHHHHHHHHHHhhccCCC----CCCCC
Confidence 566677655 59999999999998877665 599999999999999999999999999999999997664 55555
Q ss_pred HHhhhcccccccChhhHHHHHHhH
Q psy11677 340 YNLADQGEMDVSGLPCLLLFIRLG 363 (462)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~ 363 (462)
+.+..|..| +.+.+.+|.+.+
T Consensus 242 ~rv~V~~~i---~d~f~~~l~~~~ 262 (436)
T cd07122 242 QSVIVDDEI---YDEVRAELKRRG 262 (436)
T ss_pred CEEEEechh---HHHHHHHHHHhc
Confidence 555555533 445555555544
No 138
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=98.92 E-value=6.1e-10 Score=119.22 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=95.0
Q ss_pred CCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|+..- .|-.+. ...+-.|+ ..+++.+.++ +++++|+ +.+.+.+.|
T Consensus 131 ~~~P~GvV~~I~p~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~l 208 (482)
T cd07119 131 VREPVGVCGLITPWN-YPLLQAAWKLAPALAAGNTVVIKPSEVTPLTT-IALFELIEEAGLPAGVVNLVTGSGATVGAEL 208 (482)
T ss_pred EEeeeeeEEEEcCCc-hHHHHHHHHHHHHHhcCCEEEEECCccccHHH-HHHHHHHHHcCCCcCcEEEEecCcHHHHHHH
Confidence 589999999998632 264221 15555677 6777877776 9999998 455566666
Q ss_pred cCCCCccEEeecCChhHHHHHHh----hCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQ----KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~----~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
-.+..||.|...||...-+.|.+ +.+ -++++.| |...++|++|||+++|++-++.+++.+-|- .|.++..
T Consensus 209 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~-~~~lElG-Gkn~~iV~~dADl~~Aa~~i~~~~~~~~GQ----~C~a~~~ 282 (482)
T cd07119 209 AESPDVDLVSFTGGTATGRSIMRAAAGNVK-KVALELG-GKNPNIVFADADFETAVDQALNGVFFNAGQ----VCSAGSR 282 (482)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCC-cEEEECC-CCCceEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCeE
Confidence 66668999999999985444444 432 3456666 888889999999999999999999986443 5666666
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..++.|
T Consensus 283 v~V~~~i 289 (482)
T cd07119 283 LLVEESI 289 (482)
T ss_pred EEEcHHH
Confidence 6555554
No 139
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=98.92 E-value=7.8e-10 Score=118.87 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=103.7
Q ss_pred CCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|.. .. |-.+. .+++-.|+ ..+++++.++ +++++|+ +.+.+.+.
T Consensus 144 ~r~P~GVv~~I~PwN~--P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~ 220 (486)
T cd07140 144 KREPIGVCGIVIPWNY--PLMMLAWKMAACLAAGNTVVLKPAQVTPLTA-LKFAELTVKAGFPKGVINILPGSGSLVGQR 220 (486)
T ss_pred EeeccceEEEEcCCch--HHHHHHHHHHHHHHhCCEEEEECCccCcHHH-HHHHHHHHHcCcCCCcEEEEecCchHHHHH
Confidence 4789999999984 55 75311 16666777 7777888776 9999999 56677777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|..+..||.|.++||...-+.|.+.+. -.||.....|++++||++|||++.|++.++.++..+ ....|.++..
T Consensus 221 L~~~~~v~~v~ftGs~~~g~~i~~~aa~~~l~~v~lElGGk~~~iV~~dadl~~a~~~i~~~~~~~----~GQ~C~a~~r 296 (486)
T cd07140 221 LSDHPDVRKLGFTGSTPIGKHIMKSCAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFN----KGENCIAAGR 296 (486)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHHHhcCCCeEEEEcCCCCceEECCCCCHHHHHHHHHHHHHhc----cCCCCCCCcE
Confidence 777888999999999999999987763 257776667999999999999999999999999874 3445666666
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..+..|
T Consensus 297 l~V~~~i 303 (486)
T cd07140 297 LFVEESI 303 (486)
T ss_pred EEEcHHH
Confidence 6655544
No 140
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=98.91 E-value=1.6e-09 Score=114.89 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|+..- .|-.+ +...+..++ ..+++.+.++ +++|+|+. ...+.+.|
T Consensus 114 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~-~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l 191 (451)
T cd07103 114 IKQPVGVVAAITPWN-FPAAMITRKIAPALAAGCTVVLKPAEETPLSA-LALAELAEEAGLPAGVLNVVTGSPAEIGEAL 191 (451)
T ss_pred EEeeceEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCccCcHHH-HHHHHHHHHcCCCcccEEEEecCchhHHHHH
Confidence 478999999998732 26421 116667788 8888888776 99999984 44466666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||+|...||...-+.+.+.+ +..|++....|++++||+++||++.|++.++.++..+.|-
T Consensus 192 ~~~~~vd~V~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dadl~~aa~~i~~~~~~~~GQ 258 (451)
T cd07103 192 CASPRVRKISFTGSTAVGKLLMAQAADTVKRVSLELGGNAPFIVFDDADLDKAVDGAIASKFRNAGQ 258 (451)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHHhcCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 5666799999999887766655532 1356544445999999999999999999999999988775
No 141
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=98.91 E-value=2.7e-09 Score=112.29 Aligned_cols=133 Identities=20% Similarity=0.173 Sum_probs=92.3
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
++.|+||+++|...- .|-. +.. ..+-.+.+..|.+.|.++ +++|+|+ +.+.+.+.|
T Consensus 95 ~~~P~GVv~~i~p~N-~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L 173 (431)
T cd07104 95 RRVPLGVVGVISPFN-FPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNVVPGGGSEIGDAL 173 (431)
T ss_pred EEeeeeeEEEECCCC-cHHHHHHHHHHHHHHcCCeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEEEeeCCchhHHHHH
Confidence 478999999996322 2421 111 333444313455777776 8999999 455565555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
-.+..+|+|..+||.+..++|.+.+. +-++++.| |++++||+++||+++|++.++.++..+-|- .|.+...+
T Consensus 174 ~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~~~lelg-G~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~~v 248 (431)
T cd07104 174 VEHPRVRMISFTGSTAVGRHIGELAGRHLKKVALELG-GNNPLIVLDDADLDLAVSAAAFGAFLHQGQ----ICMAAGRI 248 (431)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHhhcCCcEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CcccCcEE
Confidence 55667999999999999998876431 24455555 999999999999999999999999987665 44444444
Q ss_pred hhccc
Q psy11677 343 ADQGE 347 (462)
Q Consensus 343 ~~~~~ 347 (462)
..++.
T Consensus 249 ~v~~~ 253 (431)
T cd07104 249 LVHES 253 (431)
T ss_pred EEcHH
Confidence 44433
No 142
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=98.91 E-value=1.4e-09 Score=115.22 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=101.0
Q ss_pred CCCCceeeEEEEeCCCCccc-------------------cc--ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTT-------------------VP--KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISD 263 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv-------------------~~--~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ 263 (462)
++.|+||+++|.. +|. +. .+.+-.|+ ..+.+.+.+. +++|+|. +++....
T Consensus 98 ~r~P~GVv~~I~p----~N~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~-~~l~~~~~~~~P~gvv~~v~g~~~~~~~ 172 (432)
T cd07137 98 VSEPLGVVLVISA----WNFPFLLSLEPVIGAIAAGNAVVLKPSELAPATS-ALLAKLIPEYLDTKAIKVIEGGVPETTA 172 (432)
T ss_pred EEecCcEEEEEcC----CchHHHHHHHHHHHHHhcCCEEEEECCCcChHHH-HHHHHHHHHhCCcCeEEEEeCCHHHHHH
Confidence 5899999999952 342 10 05566677 6666555554 9999998 6777778
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|+.. .||.|.++||....+.|.+.+. .+|++....|++++||++|||+++|++.++.++... |....|.+...
T Consensus 173 L~~~--~i~~v~fTGs~~~g~~v~~~aa~~~~~~~lElgG~np~iV~~dAdl~~aa~~i~~~~f~~---~~GQ~C~a~~r 247 (432)
T cd07137 173 LLEQ--KWDKIFFTGSPRVGRIIMAAAAKHLTPVTLELGGKCPVIVDSTVDLKVAVRRIAGGKWGC---NNGQACIAPDY 247 (432)
T ss_pred HHhC--CCCEEEEECChHHHHHHHHHHHhcCCcEEEEccCCCcEEEcCCCCHHHHHHHHHHHhhhc---cCCCcccCCCE
Confidence 8873 4999999999999999877762 489999999999999999999999999999998731 23446777777
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..|+.|
T Consensus 248 v~V~~~i 254 (432)
T cd07137 248 VLVEESF 254 (432)
T ss_pred EEEcHHH
Confidence 7666655
No 143
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=98.91 E-value=5.6e-09 Score=111.05 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=108.1
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TRE 259 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~ 259 (462)
++.|+||+++|+ +.. |-.+.- ..+-.|. ..++ ++|.++ +++|+|+ +++
T Consensus 92 ~~~P~GVV~~I~PwN~--P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~l~~~~l~~aG~P~gvv~~v~g~~~~ 168 (439)
T cd07081 92 IAEPIGVVASITPSTN--PTSTVIFKSLISLKTRNSIIFSPHPRAKKVT-QRAATLLLQAAVAAGAPENLIGWIDNPSIE 168 (439)
T ss_pred EEecceEEEEECCCcc--hHHHHHHHHHHHHhcCCeEEEECCccchHHH-HHHHHHHHHHHHHcCCChhhEEEEcCCCHH
Confidence 489999999998 566 753211 4555565 5555 555665 8999998 456
Q ss_pred HHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 260 ~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
....|++..+ ||+|..+||..+.+...++ ..||+..+.|++++||++|||+++|++-++.++..+.|-
T Consensus 169 ~g~~L~~~~~-V~~V~FTGs~~v~~~aa~~--~k~~~lElGGk~p~IV~~dADl~~Aa~~iv~~~~~~~GQ--------- 236 (439)
T cd07081 169 LAQRLMKFPG-IGLLLATGGPAVVKAAYSS--GKPAIGVGAGNTPVVIDETADIKRAVQSIVKSKTFDNGV--------- 236 (439)
T ss_pred HHHHHHcCCC-CCEEEEECCHHHHHHHHhc--CCCEEEEcCCCCeEEEcCCCCHHHHHHHHHHHHhcCCCC---------
Confidence 5566666554 9999999999988888776 479999999999999999999999999999999999888
Q ss_pred HHhhhcccc--cccChhhHHHHHHhH
Q psy11677 340 YNLADQGEM--DVSGLPCLLLFIRLG 363 (462)
Q Consensus 340 ~~~~~~~~~--~~~~~~~~~~~~~~~ 363 (462)
.|.+.+-++ +.++.+.+.+|.+.+
T Consensus 237 ~C~a~~rv~V~~~i~d~f~~~l~~~~ 262 (439)
T cd07081 237 ICASEQSVIVVDSVYDEVMRLFEGQG 262 (439)
T ss_pred CCCCCCEEEEcHHHHHHHHHHHHHcC
Confidence 566655544 455666777776664
No 144
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=98.90 E-value=1.4e-09 Score=118.42 Aligned_cols=178 Identities=19% Similarity=0.114 Sum_probs=123.9
Q ss_pred HHHHHHhCCchhhcC----chhcHHH-----HHHHHhhcc---------ccccccccCC---CCCCCCceeeEEEEeCCC
Q psy11677 166 SATWALDRGVSVVIC----NGMQKEA-----IKQIVAGRK---------IGTFFTDASA---QSGGTPVEVLAEIWKNET 224 (462)
Q Consensus 166 iA~aL~~~~~~IL~A----N~~D~~~-----~~~~~~~~~---------i~t~~a~~~d---~~~~~PlGVi~~IyEsr~ 224 (462)
+++.|+++.++|..+ +.+.+.. +...+.-++ -|..+-.-.. ...+.|+||+++|-.-.
T Consensus 128 ~a~~l~~~~~ela~~~~~e~GK~~~~a~~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVV~~I~PwN- 206 (538)
T PLN02466 128 FADLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWN- 206 (538)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCceEEEEEecceEEEEECCCc-
Confidence 888888888888776 6555432 222222111 0111100000 12488999999994211
Q ss_pred Ccccc----------------c--ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeecCChh
Q psy11677 225 LNTTV----------------P--KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPRGSSD 281 (462)
Q Consensus 225 ~Pnv~----------------~--~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~ 281 (462)
.|-.+ . ...+-.|+ ..+++.+.++ +++|+|+. .+.+.+.|..+..||.|...||..
T Consensus 207 ~P~~l~~~~i~pALaaGN~VVlKPs~~tp~~~-~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~~~vd~V~FTGS~~ 285 (538)
T PLN02466 207 FPLLMFAWKVGPALACGNTIVLKTAEQTPLSA-LYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTD 285 (538)
T ss_pred hHHHHHHHHHhHHHHcCCEEEeECCCCCcHHH-HHHHHHHHhcCCCcccEEEEecCchhHHHHHhcCCCcCEEEEECCHH
Confidence 25321 1 15666677 7777888887 99999984 556777777888899999999999
Q ss_pred HHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhccccc
Q psy11677 282 LVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 282 lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
..+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+.|- .|.+...+..|+.|.
T Consensus 286 ~G~~v~~~aa~~~l~pv~lElGGknp~iV~~dADl~~Aa~~i~~~~f~~~GQ----~C~a~~rv~V~~~i~ 352 (538)
T PLN02466 286 TGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQ----CCCAGSRTFVHERVY 352 (538)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCeEEEcCCCCHHHHHHHHHHHHHhhcCC----CcCcCcEEEEcHHHH
Confidence 9998877552 379999999999999999999999999999999987766 566655565555553
No 145
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=98.89 E-value=1.9e-09 Score=115.05 Aligned_cols=190 Identities=19% Similarity=0.097 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|.+.+.. +++.|.++.++|......|.-. +...++.++ ..+.+
T Consensus 34 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~---~~~~~~~~~ 110 (465)
T cd07151 34 VDEAYRAAAAAQKEWAATLPQERAEILEKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITR---EAATFPLRM 110 (465)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 55656667766654332 8888888888888776655311 333333333 22221
Q ss_pred ---------CC---CCCCCCceeeEEEEe-CCCCccc----------------ccc--cccccchHHHHHhhcCCC----
Q psy11677 205 ---------SA---QSGGTPVEVLAEIWK-NETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 205 ---------~d---~~~~~PlGVi~~IyE-sr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---- 249 (462)
+. ...+.|+||+++|.. .. |-. +.. ..+-.+....+.+.+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aG~P~ 188 (465)
T cd07151 111 EGRILPSDVPGKENRVYREPLGVVGVISPWNF--PLHLSMRSVAPALALGNAVVLKPASDTPITGGLLLAKIFEEAGLPK 188 (465)
T ss_pred cCccccCCCCCceeEEEEecceEEEEECCCCh--HHHHHHHHHHHHHHcCCEEEEECCCCCcHhHHHHHHHHHHHcCcCc
Confidence 11 124899999999986 44 621 111 233333202344777776
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++|+|+ +...+.+.|-.+..+|.|.-.||...-+.|.+.+ -+-++++.| |++++||++|||+++|++-++.++.
T Consensus 189 gvv~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~p~iV~~daDl~~Aa~~i~~~~f 267 (465)
T cd07151 189 GVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTPVGRHIGELAGRHLKKVALELG-GNNPFVVLEDADIDAAVNAAVFGKF 267 (465)
T ss_pred cceEEEecCchhhHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHH
Confidence 8999998 3455655555566699999999998777665442 114456666 9999999999999999999999998
Q ss_pred CCCCCCCchhHHHHHHhhhcccc
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.+-|- .|.+...+..|..|
T Consensus 268 ~~~GQ----~C~a~~rv~V~~~i 286 (465)
T cd07151 268 LHQGQ----ICMAINRIIVHEDV 286 (465)
T ss_pred hcCCC----CCcCCcEEEEeHHH
Confidence 75444 56665555555544
No 146
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=98.88 E-value=5.3e-09 Score=105.78 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=78.7
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-C--CCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-E--EGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~--p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
|.+|..|+.+|..++|+.+.++|||+ ||+.||+ . |+++.|++++++|+.+++ .+|..-++++ +...+.+
T Consensus 212 GGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA-----~~GakvLHP~--ai~pa~~ 283 (304)
T cd04248 212 GYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLA-----NLGMEAIHPK--AAKGLRQ 283 (304)
T ss_pred CcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHH-----HcChhhcCHH--HHHHHHH
Confidence 78999999999999999999999996 9999998 5 689999999999999885 3455556775 7888999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+|+++|.|..+|+ ..||+|.
T Consensus 284 ~~IPi~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 284 AGIPLRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred cCCeEEEecCCCCC---------CCCceeC
Confidence 99999999998874 5699884
No 147
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=98.88 E-value=1.1e-08 Score=108.42 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCCceeeEEEEeCCCCcc-c---------------cc--ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT-T---------------VP--KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn-v---------------~~--~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|...- .|- . +. .+.+-.+. ..|.+.+.++ +++++|+ +.+.+.+.|
T Consensus 120 ~~~P~GVv~~i~p~N-~P~~~~~~~~~~ALaaGN~VI~Kps~~~p~~~-~~l~~~l~~ag~P~gvv~~v~g~~~~~~~~l 197 (453)
T cd07149 120 IREPIGVVAAITPFN-FPLNLVAHKVGPAIAAGNAVVLKPASQTPLSA-LKLAELLLEAGLPKGALNVVTGSGETVGDAL 197 (453)
T ss_pred EeecceEEEEECCCC-ChHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCcCccceEEeecCchHHHHHH
Confidence 378999999994322 232 1 11 15555666 6677777775 9999999 456666666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..+|.|+..||....+.|.+.+...|++....|++++||++|||+++|++-++.++..+.|-
T Consensus 198 ~~~~~v~~V~ftGs~~~g~~i~~~a~~~~~~lelGGk~p~iV~~dadl~~aa~~i~~~~~~~~GQ 262 (453)
T cd07149 198 VTDPRVRMISFTGSPAVGEAIARKAGLKKVTLELGSNAAVIVDADADLEKAVERCVSGAFANAGQ 262 (453)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHcCCCceeeecCCCceEEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 66777999999999999999998875357777777999999999999999999999999998766
No 148
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=98.88 E-value=8.6e-09 Score=109.48 Aligned_cols=118 Identities=23% Similarity=0.280 Sum_probs=90.7
Q ss_pred CCCceeeEEEEeCCCCc-cc---------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLN-TT---------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~P-nv---------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|...- .| .. +.. ..+-.|+ ..+++.+.++ +++++|+ +.+.+.+.|-
T Consensus 121 ~~P~Gvv~~I~p~N-~P~~~~~~~~~~AL~aGN~VI~Kps~~~p~~~-~~l~~~l~~ag~P~g~~~~v~g~~~~~~~~l~ 198 (453)
T cd07094 121 REPVGVVLAITPFN-FPLNLVAHKLAPAIATGCPVVLKPASKTPLSA-LELAKILVEAGVPEGVLQVVTGEREVLGDAFA 198 (453)
T ss_pred EeccceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCCCcCcEEEEeCCCchHHHHHh
Confidence 78999999994222 24 11 111 5566676 6667777775 9999998 4555666666
Q ss_pred CCCCccEEeecCChhHHHHHHhhCCCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.+..+|.|+..||...-+.|.+.+...| +++.| |++++||+++||+++|++-++.++..+-|-
T Consensus 199 ~~~~v~~V~fTGs~~~g~~v~~~a~~~~~~lelG-Gk~~~iV~~dadl~~aa~~i~~~~~~~~GQ 262 (453)
T cd07094 199 ADERVAMLSFTGSAAVGEALRANAGGKRIALELG-GNAPVIVDRDADLDAAIEALAKGGFYHAGQ 262 (453)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHcCCCceEEecC-CCCceEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 6678999999999999999999885345 45555 999999999999999999999999987665
No 149
>PRK09181 aspartate kinase; Validated
Probab=98.88 E-value=5.1e-09 Score=112.29 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=80.2
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-C--CCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-E--EGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~--p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
|.+|+.|+.+|..|+||.+.+||||+ ||+.||+ . |+++.|+++++.|+.+|+ ..|..-++++ +...+.+
T Consensus 218 GGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA-----~~GAkVLHp~--ti~pa~~ 289 (475)
T PRK09181 218 GYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLA-----NLGMEAIHPK--AAKGLRQ 289 (475)
T ss_pred ChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHH-----HcCchhcCHH--HHHHHHH
Confidence 77899999999999999999999997 9999998 6 799999999999999885 3455556775 7778999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
.|||++|.|..+|+ ..||+|...
T Consensus 290 ~~Ipi~V~nt~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 290 AGIPLRIKNTFEPE---------HPGTLITKD 312 (475)
T ss_pred cCCeEEEecCCCCC---------CCCeEEecC
Confidence 99999999988773 569999754
No 150
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.86 E-value=6e-09 Score=97.43 Aligned_cols=95 Identities=23% Similarity=0.388 Sum_probs=77.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV 111 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv 111 (462)
..+|++|.++|.++++..+++.|||||+|+.+| +++++++|...|+.. +..+ -.+..++ .+.+.++
T Consensus 116 VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~---~~kLv~eI~A~dl~~---~~t~---vD~~~P~-----Ll~k~~m 181 (212)
T COG2054 116 VTSDSISVWIAAKAGATEVVKATDVDGIYEEDP---KGKLVREIRASDLKT---GETS---VDPYLPK-----LLVKYKM 181 (212)
T ss_pred ecccHHHHHHHHHcCCcEEEEEecCCcccccCC---cchhhhhhhHhhccc---Cccc---ccchhhH-----HHHHcCC
Confidence 689999999999999999999999999999875 569999999988764 1112 2333444 5678899
Q ss_pred eEEEEeCCChhHHHHHHcCCc-cccccccC
Q psy11677 112 SVVICNGMQKEAIKQIVAGRK-IGTFFTDA 140 (462)
Q Consensus 112 ~v~I~sG~~~~~L~~~l~g~~-~GT~I~~~ 140 (462)
.++++||..|+++..++.|+. +||.|.+.
T Consensus 182 ~~~Vvng~~pervi~~lrGk~~v~T~Ivg~ 211 (212)
T COG2054 182 NCRVVNGKEPERVILALRGKEVVGTLIVGG 211 (212)
T ss_pred ceEEECCCCHHHHHHHHhccccceEEEeCC
Confidence 999999999999999999864 69998753
No 151
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=98.86 E-value=6.2e-10 Score=118.49 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC--
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS-- 205 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~-- 205 (462)
.+......|++|.+.+.. +++.|.++.+++......|.-. +...++.++ ..++..
T Consensus 30 ~v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~~~~~~~ 106 (462)
T PF00171_consen 30 DVDRAVEAARAAFKEWSKLPAAERARILERFADLLEERRDELAELIALETGKPIAEARGEVDRAIDFLR---YYADAARK 106 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhh---hhhhcccc
Confidence 366666777777664333 8888888888887777765332 233333332 211111
Q ss_pred --------C-----CCCCCCceeeEEEEeCCCCcc-c---------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 206 --------A-----QSGGTPVEVLAEIWKNETLNT-T---------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 206 --------d-----~~~~~PlGVi~~IyEsr~~Pn-v---------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
+ ...+.|+||+++|.... .|- . + +...+-.|+ ..+++.+.++ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n-~P~~~~~~~~~~ALaaGN~VVlkps~~~~~~~-~~l~~~~~~AglP~g 184 (462)
T PF00171_consen 107 LAGEVLPSDPGSRNYTRREPLGVVLIITPWN-FPLYLAVWKIAPALAAGNTVVLKPSEQAPLTA-LLLAELLEEAGLPPG 184 (462)
T ss_dssp HTEEEEEESTTEEEEEEEEE-SEEEEEE-SS-SCTHHHHHHHHHHHHTT-EEEEEEBTTSHHHH-HHHHHHHHHHTSTTT
T ss_pred eehhhcccccccccccccccccceeeccccc-ccccccccchhhhhcccccceeeecccccccc-ccchhhccccccccc
Confidence 1 12488999999996433 232 1 1 116677777 7777777664 9
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+. ..++.+.|-.+..||+|.-.||....+.|.+.+. .+||+..+.|++++||+++||+++|++-++.++..+
T Consensus 185 vv~vv~g~~~~~~~~l~~~~~v~~v~ftGs~~~g~~i~~~a~~~~~~v~lelgG~~p~iV~~daDld~aa~~iv~~~~~~ 264 (462)
T PF00171_consen 185 VVNVVPGDGSEVGEALVSHPDVDLVSFTGSTATGRAIAKAAAKNLKPVVLELGGKNPVIVDPDADLDKAAEAIVRGAFFN 264 (462)
T ss_dssp SEEEECSSTHHHHHHHHHTTTEEEEEEESEHHHHHHHHHHHHTTTSEEEEEECEEEEEEE-TTSHHHHHHHHHHHHHHGG
T ss_pred cccccccccccccceeeeccccceeeecchhhhhhhhhhhcccccccccccccccceeeEecccccccccccccchhccc
Confidence 9999984 4444444445556999999999999998887652 489999999999999999999999999999999988
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
-|-
T Consensus 265 ~GQ 267 (462)
T PF00171_consen 265 SGQ 267 (462)
T ss_dssp GGT
T ss_pred ccc
Confidence 776
No 152
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=98.85 E-value=2.5e-09 Score=112.98 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=118.3
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc---------CC-------CCCCCCceeeEEE--
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---------SA-------QSGGTPVEVLAEI-- 219 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---------~d-------~~~~~PlGVi~~I-- 219 (462)
+++.|.++.+++..+...|.-. +...++.++ ..+.. +. ..++.|+||+++|
T Consensus 31 ~a~~l~~~~~~la~~~~~e~Gk~~~~~~~ei~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p 107 (432)
T cd07105 31 AADLLESRRDEFIEAMMEETGATAAWAGFNVDLAAGMLR---EAASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAP 107 (432)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCeecccCCCCceeEEEEecceEEEEECC
Confidence 7788888887777666554422 222333332 21111 10 1247899999999
Q ss_pred EeCCCCccc---------------c--cccccccchHHHHHhhcCCC----CeEEeecC-H---HHHHHHhcCCCCccEE
Q psy11677 220 WKNETLNTT---------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVST-R---EEISDLLSMEKHIDLI 274 (462)
Q Consensus 220 yEsr~~Pnv---------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r---~~~~~ll~~~~~iDli 274 (462)
|... ... + +...+-.|+ ..+.+.+.++ +++|+|+. . ..+.+.|-.+..||.|
T Consensus 108 ~N~P--~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~~~~l~~~~~v~~v 184 (432)
T cd07105 108 WNAP--VILGTRAIAYPLAAGNTVVLKASELSPRTH-WLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEALIAHPAVRKV 184 (432)
T ss_pred cCcH--HHHHHHHHHHHHhcCCEEEEECCccChHHH-HHHHHHHHHcCcCCCcEEEEeCCCCchHHHHHHHhcCCCCCEE
Confidence 4332 221 1 115666777 7777888776 99999983 2 2355555556679999
Q ss_pred eecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 275 IPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 275 IPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
...||...-+.|.+.+ +.+||+....|++++||+++||+++|++-++.++..+- ...|.+...+..|..|
T Consensus 185 ~ftGs~~~g~~i~~~aa~~~~~~~lElgGk~p~iV~~dadl~~aa~~i~~~~~~~~----GQ~C~a~~~v~V~~~i 256 (432)
T cd07105 185 NFTGSTRVGRIIAETAAKHLKPVLLELGGKAPAIVLEDADLDAAANAALFGAFLNS----GQICMSTERIIVHESI 256 (432)
T ss_pred EEECCHHHHHHHHHHHHhcCCeEEEeCCCCCceEECCCCCHHHHHHHHHHHHHhcC----CCCCcCCceEEEcHHH
Confidence 9999999988888654 24899999999999999999999999999998887744 4466666666666555
No 153
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=98.83 E-value=3.7e-09 Score=112.17 Aligned_cols=118 Identities=21% Similarity=0.201 Sum_probs=92.7
Q ss_pred CCCCceeeEEEEe-CCCCccc-----------------cc-ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTT-----------------VP-KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv-----------------~~-~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+. .. |-. ++ ...+..+. ..|.+.+.++ +++|+|+ +.+....|
T Consensus 113 ~~~P~GVv~~i~p~N~--P~~~~~~~l~~ALaaGN~VVlKps~~~~~~~-~~l~~~l~~aGlP~g~~~~v~g~~~~~~~L 189 (452)
T cd07102 113 RREPLGVVLIIAPWNY--PYLTAVNAVIPALLAGNAVILKHSPQTPLCG-ERFAAAFAEAGLPEGVFQVLHLSHETSAAL 189 (452)
T ss_pred EEEeccEEEEEcCCch--HHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHhcCCCcCcEEEEeCCchhHHHH
Confidence 4889999999986 33 631 11 14555555 6666888887 9999998 45655566
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+. +..||.|...||...-+.|.+.+. -+||.....|++++||++|||++.|++.++.++..+.|-
T Consensus 190 ~~-~~~v~~V~fTGs~~~g~~v~~~a~~~~~~v~lelgG~~~~iV~~dADl~~aa~~i~~~~~~~~GQ 256 (452)
T cd07102 190 IA-DPRIDHVSFTGSVAGGRAIQRAAAGRFIKVGLELGGKDPAYVRPDADLDAAAESLVDGAFFNSGQ 256 (452)
T ss_pred hc-CCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEECCCCCceEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 65 567999999999998777766531 389998889999999999999999999999999998775
No 154
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=98.82 E-value=3.7e-09 Score=112.59 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCCCceeeEEEEe-CCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
++.|+|||++|.. .. |-.+ .. .++-.|+ ..+++.+.++ +++++|+ +.+.+.+.
T Consensus 116 ~~~P~GvV~~I~p~N~--P~~~~~~~i~~ALaaGN~Vi~Kps~~~p~~~-~~l~~~~~~aG~P~g~~~~v~g~~~~~~~~ 192 (454)
T cd07118 116 LREPIGVVGIITPWNF--PFLILSQKLPFALAAGCTVVVKPSEFTSGTT-LMLAELLIEAGLPAGVVNIVTGYGATVGQA 192 (454)
T ss_pred EeecceEEEEECCCCc--HHHHHHHHHHHHHhcCCEEEEECCCCCcHHH-HHHHHHHHhcCCCccceEEEecCCchHHHH
Confidence 4799999999985 33 6421 11 6666777 7777888777 8999998 45557777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|-.+..||.|...||...-+.|.+.+ +..|++.-..|++++||++|||+++|++-++.++..+-|- .|.+...+
T Consensus 193 L~~~~~v~~v~ftGs~~~g~~i~~~aa~~~~~~~lelgG~n~~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~rv 268 (454)
T cd07118 193 MTEHPDVDMVSFTGSTRVGKAIAAAAARNLKKVSLELGGKNPQIVFADADLDAAADAVVFGVYFNAGE----CCNSGSRL 268 (454)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEeccCCCCceEECCCCCHHHHHHHHHHHHHhccCC----CCCCCceE
Confidence 77778899999999987666655532 1244544455999999999999999999999999986443 56666666
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|+.|
T Consensus 269 ~V~~~i 274 (454)
T cd07118 269 LVHESI 274 (454)
T ss_pred EEcHHH
Confidence 555554
No 155
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=98.82 E-value=6.1e-09 Score=112.61 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCCCceeeEEEEe-CCCCccc----------------ccc--cccccchHHH----HHhhcCCC----CeEEeecCHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTT----------------VPK--KHAKTSQCKY----FTKMLPRY----PLHSQVSTREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv----------------~~~--~ea~~sn~~~----l~~al~~~----~~v~~v~~r~~~ 261 (462)
++.|+|||++|.. .. |-. +.. +++-.|+ .. +.+.+.++ +.+++|.....+
T Consensus 151 ~~~P~GVV~~I~PwN~--P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~~~~l~~~~~~~aGlP~gvv~~v~g~~~~ 227 (508)
T PLN02315 151 VWNPLGIVGVITAFNF--PCAVLGWNACIALVCGNCVVWKGAPTTPLIT-IAMTKLVAEVLEKNNLPGAIFTSFCGGAEI 227 (508)
T ss_pred EEecceEEEEECCCcc--hHHHHHHHHhHHHHcCCEEEeeCCCcChHHH-HHHHHHHHHHHHHcCCCcccEEEecCChHH
Confidence 4779999999986 44 631 111 5555666 55 33777776 899999865557
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
.+.|-.+..||.|.++||...-+.|.+.+ +-.||.....|++++||++|||+++|++.++.++..+-| ..|.++
T Consensus 228 ~~~l~~~~~v~~v~fTGS~~~G~~v~~~aa~~~~~~~lElgGknp~iV~~dADl~~Aa~~i~~~~f~~~G----Q~C~a~ 303 (508)
T PLN02315 228 GEAIAKDTRIPLVSFTGSSKVGLMVQQTVNARFGKCLLELSGNNAIIVMDDADIQLAVRSVLFAAVGTAG----QRCTTC 303 (508)
T ss_pred HHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCCEEEecCCCCeEEECCCCCHHHHHHHHHHHHHHhcC----CCCCCC
Confidence 77777778899999999999988888743 237888888999999999999999999999999988544 356666
Q ss_pred HHhhhcccc
Q psy11677 340 YNLADQGEM 348 (462)
Q Consensus 340 ~~~~~~~~~ 348 (462)
..+..|..|
T Consensus 304 ~rv~V~~~i 312 (508)
T PLN02315 304 RRLLLHESI 312 (508)
T ss_pred eEEEEeHHH
Confidence 666655544
No 156
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=98.81 E-value=9.2e-09 Score=109.03 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|.+.... +++.|.++.++|......|.-. +...++.++ ..+.+
T Consensus 15 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~---~~~~~~~~~ 91 (443)
T cd07152 15 VDRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVRESGSIRPKAGFEVGAAIGELH---EAAGLPTQP 91 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 44555556655543222 8888888888887766655321 233333332 21111
Q ss_pred -----CC------CCCCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----Ce
Q psy11677 205 -----SA------QSGGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 205 -----~d------~~~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~ 251 (462)
+. ...+.|+||+++|...- .|-. +.. +.+-.|....|.+.+.++ ++
T Consensus 92 ~~~~~~~~~g~~~~~~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~~l~~~~~~ag~P~gv 170 (443)
T cd07152 92 QGEILPSAPGRLSLARRVPLGVVGVISPFN-FPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGV 170 (443)
T ss_pred CCccccccCCceeEEEEecceEEEEECCCC-cHHHHHHHHHHHHHHcCCEEEEECCcccchhHHHHHHHHHHHhCcCcCc
Confidence 11 12478999999994211 1321 111 223333213444777776 99
Q ss_pred EEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 252 HSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 252 v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
+|+|+ +++ +.+.|-.+..||.|...||....+.|.+.+. +-++++.| |+.++||+++||+++|++.++.++..+
T Consensus 171 v~~v~g~~~-~~~~l~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~~~iV~~dAdl~~aa~~i~~~~~~~ 248 (443)
T cd07152 171 LHVLPGGAD-AGEALVEDPNVAMISFTGSTAVGRKVGEAAGRHLKKVSLELG-GKNALIVLDDADLDLAASNGAWGAFLH 248 (443)
T ss_pred EEEecCChH-HHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHHhh
Confidence 99998 455 5555556677999999999999999877541 24555655 999999999999999999999888776
Q ss_pred CCCCCchhHHHHHHhhhcc
Q psy11677 328 QGLNPEDRAKAIYNLADQG 346 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~ 346 (462)
-|- .|.+...+..++
T Consensus 249 ~GQ----~C~a~~rv~V~~ 263 (443)
T cd07152 249 QGQ----ICMAAGRHLVHE 263 (443)
T ss_pred cCC----CCcCCeeEEEcH
Confidence 554 444444444333
No 157
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=98.81 E-value=3.9e-09 Score=111.84 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=97.8
Q ss_pred CCCCceeeEEEEe-CCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeecCHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWK-NETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVSTREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~~r~~~~~ll~ 266 (462)
.+.|+|||++|+. .. |-. + +.+.+-.|+ ..+.+.+.++ +++++|+....+.+.|.
T Consensus 98 ~~~P~Gvv~~I~pwN~--P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~-~~l~~l~~~alP~g~~~~v~g~~~~~~~l~ 174 (434)
T cd07133 98 EYQPLGVVGIIVPWNY--PLYLALGPLIAALAAGNRVMIKPSEFTPRTS-ALLAELLAEYFDEDEVAVVTGGADVAAAFS 174 (434)
T ss_pred EEecccEEEEEcCCch--HHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHhCCcCeEEEEeCChHHHHHHH
Confidence 4899999999986 33 521 1 115555666 6666555555 99999995444555554
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.. .+|.|...||...-+.|.+.+. .+|++....|++++||++|||++.|++.++.++..+-|= .|.+...+..
T Consensus 175 ~~-~v~~V~ftGs~~~g~~v~~~aa~~~~~~~lElgGk~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 249 (434)
T cd07133 175 SL-PFDHLLFTGSTAVGRHVMRAAAENLTPVTLELGGKSPAIIAPDADLAKAAERIAFGKLLNAGQ----TCVAPDYVLV 249 (434)
T ss_pred hC-CCCEEEEeCchHHHHHHHHHHHhcCceEEEEccCCCcEEEeCCCCHHHHHHHHHHHHhccCCC----cccCCCEEEE
Confidence 44 4999999999998888877542 479998888999999999999999999999999987654 4555555555
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..|
T Consensus 250 ~~~i 253 (434)
T cd07133 250 PEDK 253 (434)
T ss_pred cHHH
Confidence 5444
No 158
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=98.80 E-value=8.2e-09 Score=110.27 Aligned_cols=161 Identities=19% Similarity=0.138 Sum_probs=111.2
Q ss_pred HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcc--cccccc-cc----CC---CCCCCCceeeEEE-
Q psy11677 166 SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRK--IGTFFT-DA----SA---QSGGTPVEVLAEI- 219 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~--i~t~~a-~~----~d---~~~~~PlGVi~~I- 219 (462)
+++.|.++.+++.++...|.-. ++.+++.++ .|..+. .. .. ...+.|+||+++|
T Consensus 70 ~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~ 149 (473)
T cd07082 70 FADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRDTIEELKRLDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIG 149 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCceeEEEEecceEEEEEC
Confidence 7888888888888877766322 333333333 011110 00 00 1248999999999
Q ss_pred -EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEee
Q psy11677 220 -WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIP 276 (462)
Q Consensus 220 -yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIP 276 (462)
|... ...... +.+..+. ..+++.|.++ +++++++. .+.+.+.|-.+..+|.|..
T Consensus 150 p~N~P--~~~~~~~i~~AL~aGN~vilKps~~~~~~~-~~l~~~l~~aglp~~~~~vv~g~~~~~~~~l~~~~~v~~V~f 226 (473)
T cd07082 150 PFNYP--LNLTVSKLIPALIMGNTVVFKPATQGVLLG-IPLAEAFHDAGFPKGVVNVVTGRGREIGDPLVTHGRIDVISF 226 (473)
T ss_pred CcCcH--HHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHcCCCccceEEEecCcHHHHHHHhcCCCCCEEEE
Confidence 4332 221111 5556666 6666777775 99999984 4446676666778999999
Q ss_pred cCChhHHHHHHhhCCCcce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 277 RGSSDLVRSIQQKSQHIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 277 rG~~~lv~~v~~~s~~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.||....+.|.+.+...|+ +++| |...++|+++||+++|++.+++++..+.|-
T Consensus 227 tGs~~~g~~i~~~a~~~~~~lelg-g~n~~iV~~dadl~~aa~~i~~~~~~~~GQ 280 (473)
T cd07082 227 TGSTEVGNRLKKQHPMKRLVLELG-GKDPAIVLPDADLELAAKEIVKGALSYSGQ 280 (473)
T ss_pred ECcHHHHHHHHHHhCCCcEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999988633776 6776 555678999999999999999999987774
No 159
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=98.78 E-value=1.1e-08 Score=109.10 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-..- .|-. +.. ..+-.|+ ..+.+.+.++ +++++|. .++....|+.
T Consensus 121 ~~P~GvV~~I~PwN-~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~l~~~aGlP~gvv~~v~~g~~~~~~l~~ 198 (457)
T PRK09406 121 YQPLGVVLAVMPWN-FPLWQVVRFAAPALMAGNVGLLKHASNVPQTA-LYLADLFRRAGFPDGCFQTLLVGSGAVEAILR 198 (457)
T ss_pred EecceeEEEECCcc-chHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHHhCCCcCcEEEEcCCchhHHHHhc
Confidence 78999999993211 2421 111 4455666 6666877776 8999986 5667777775
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--C-cceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--H-IPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~-iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
. ..||.|...||...-+.|.+.+. . -+++++| |++++||++|||+++|++.++.++..+.|- .|.++..+.
T Consensus 199 ~-~~i~~V~fTGs~~~G~~i~~~a~~~~~~~~lElG-G~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv~ 272 (457)
T PRK09406 199 D-PRVAAATLTGSEPAGRAVAAIAGDEIKKTVLELG-GSDPFIVMPSADLDRAAETAVTARVQNNGQ----SCIAAKRFI 272 (457)
T ss_pred C-CCcCEEEEECcHHHHHHHHHHHHhcCCceeeecC-CCCeeEECCCCCHHHHHHHHHHHHhhCCCC----cccCCeEEE
Confidence 4 44999999999998888876442 1 3568888 999999999999999999999999998774 355544444
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.|+.+
T Consensus 273 V~~~i 277 (457)
T PRK09406 273 VHADV 277 (457)
T ss_pred EcHHH
Confidence 44443
No 160
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=98.77 E-value=6.6e-09 Score=111.12 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=99.3
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------c--ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------P--KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~--~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|...- .|-.+ . .+.+-.|+ ..+.+.+.++ +++|+|+ +.+.+.+.|
T Consensus 132 ~~~P~GVv~~I~P~N-~Pl~~~~~~i~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~l 209 (473)
T cd07097 132 TREPLGVVGLITPWN-FPIAIPAWKIAPALAYGNTVVFKPAELTPASA-WALVEILEEAGLPAGVFNLVMGSGSEVGQAL 209 (473)
T ss_pred EEEeeeeEEEEcccC-hHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHHcCCCCcceEEeccCchHHHHHH
Confidence 379999999998522 25321 1 15666777 7777777776 9999999 445566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--Ccce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
-.+..||.|...||...-+.|.+.+. ..|| ++.| |++++||++|||+++|++-++.++..+.|- .|.+...+
T Consensus 210 ~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv 284 (473)
T cd07097 210 VEHPDVDAVSFTGSTAVGRRIAAAAAARGARVQLEMG-GKNPLVVLDDADLDLAVECAVQGAFFSTGQ----RCTASSRL 284 (473)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHhccCCcEEEECC-CCCeeEECCCCCHHHHHHHHHHHHHhccCC----CCcCCeeE
Confidence 66678999999999999988877641 3465 5555 999999999999999999999999998774 35554444
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..++.|
T Consensus 285 ~V~~~i 290 (473)
T cd07097 285 IVTEGI 290 (473)
T ss_pred EEehhH
Confidence 444443
No 161
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=98.76 E-value=1.5e-08 Score=107.82 Aligned_cols=115 Identities=18% Similarity=0.085 Sum_probs=87.4
Q ss_pred CCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-.+. ...+-.|. ..+++.+.+. +++|+|. +.+.+.+.|-
T Consensus 113 ~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~~lP~gvv~~v~g~~~~~~~~l~ 190 (456)
T cd07107 113 LREPYGVVARIVAFN-HPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSA-LRLAELAREVLPPGVFNILPGDGATAGAALV 190 (456)
T ss_pred EEecceEEEEECCcc-cHHHHHHHHHhHHHHcCCEEEEeCCCCChHHH-HHHHHHHHHhCCcCcEEEEeCCCchHHHHHh
Confidence 478999999996542 264321 15555666 6666555554 9999998 4554555555
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
.+..||.|...||...-+.|.+.+ +..||+....|++++||++|||++.|++-++.++.
T Consensus 191 ~~~~i~~v~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~iV~~dadl~~Aa~~i~~~~~ 251 (456)
T cd07107 191 RHPDVKRIALIGSVPTGRAIMRAAAEGIKHVTLELGGKNALIVFPDADPEAAADAAVAGMN 251 (456)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhcCCCeEEEECCCCCeEEECCCCCHHHHHHHHHHhch
Confidence 677799999999998877777654 24899888889999999999999999999999973
No 162
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=98.75 E-value=9.4e-09 Score=109.96 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|-. + +.+.+-.|+ ..+++.+.++ +.+|+|+. ...+.+.|-
T Consensus 135 ~r~P~GVv~~I~p~N-~P~~~~~~~i~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~alP~gv~~~v~g~~~~~~~~l~ 212 (475)
T PRK13473 135 RRDPVGVVASIAPWN-YPLMMAAWKLAPALAAGNTVVLKPSEITPLTA-LKLAELAADILPPGVLNVVTGRGATVGDALV 212 (475)
T ss_pred EEecceeEEEEccCC-hHHHHHHHHHHHHHhcCCEEEEECCCCChHHH-HHHHHHHHHhCCcCcEEEEecCchHHHHHHh
Confidence 489999999993111 1321 1 115566666 6666555444 99999984 445555555
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.+..||+|..+||...-+.|.+.+. .+|+..-..|++++||++|||+++|++.++.++..+-|- .|.+...+..
T Consensus 213 ~~~~vd~V~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~iV~~dADld~Aa~~i~~~~f~n~GQ----~C~a~~rv~V 288 (475)
T PRK13473 213 GHPKVRMVSLTGSIATGKHVLSAAADSVKRTHLELGGKAPVIVFDDADLDAVVEGIRTFGYYNAGQ----DCTAACRIYA 288 (475)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCeEEEE
Confidence 5667999999999998888776552 368877777999999999999999999998887776554 4444444444
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..|
T Consensus 289 ~~~i 292 (475)
T PRK13473 289 QRGI 292 (475)
T ss_pred cHHH
Confidence 4443
No 163
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=98.72 E-value=1.1e-08 Score=108.01 Aligned_cols=132 Identities=22% Similarity=0.227 Sum_probs=99.1
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-. + +.+.+-.++ ..+.+.+.+. +++++|+ +.+....|+.
T Consensus 97 ~~~P~Gvv~~i~p~n-~P~~~~~~~~~~aL~aGN~vvlKps~~~p~~~-~~l~~~~~~~~P~gv~~vv~g~~~~~~~l~~ 174 (426)
T cd07087 97 IPEPLGVVLIIGPWN-YPLQLALAPLIGAIAAGNTVVLKPSELAPATS-ALLAKLIPKYFDPEAVAVVEGGVEVATALLA 174 (426)
T ss_pred EEecCcEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCCCEEEEEeCCchHHHHHHh
Confidence 489999999995322 2321 1 115566677 7777666553 8999998 5666777877
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.. +|.|+..||....+.|.+.+. .+|++....|++++||++|||+++|++-++.++..+-|- .|.+...+..
T Consensus 175 ~~--v~~V~ftGs~~~g~~i~~~a~~~~~~~~lelgG~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 248 (426)
T cd07087 175 EP--FDHIFFTGSPAVGKIVMEAAAKHLTPVTLELGGKSPCIVDKDANLEVAARRIAWGKFLNAGQ----TCIAPDYVLV 248 (426)
T ss_pred CC--CCEEEEeCChHHHHHHHHHHHhhCCceEEeccCCCceEecCCCCHHHHHHHHHHHHHhccCC----ccccCCEEEE
Confidence 64 999999999999888876552 478888888999999999999999999999999987654 4555555555
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..+
T Consensus 249 ~~~i 252 (426)
T cd07087 249 HESI 252 (426)
T ss_pred cHHH
Confidence 5444
No 164
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=98.71 E-value=3e-08 Score=105.45 Aligned_cols=120 Identities=23% Similarity=0.218 Sum_probs=91.1
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cccc--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TVPK--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+|||++|...- .|- |+.. ..+-.|. ..+.+.+.++ +.+++|+. .+.+.+.|
T Consensus 120 ~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~ag~p~g~~~~v~g~~~~~~~~l 197 (456)
T cd07145 120 VREPIGVVGAITPFN-FPANLFAHKIAPAIAVGNSVVVKPSSNTPLTA-IELAKILEEAGLPPGVINVVTGYGSEVGDEI 197 (456)
T ss_pred EEecceeEEEECCCC-hHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCCCcccEEEEeCCCchHHHHH
Confidence 368999999993221 142 1111 5556676 7777888776 89999983 44455555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..+|.|...||...-+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+.|-
T Consensus 198 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~v~lElgG~n~~iV~~dAdl~~aa~~i~~~~f~~~GQ 264 (456)
T cd07145 198 VTNPKVNMISFTGSTAVGLLIASKAGGTGKKVALELGGSDPMIVLKDADLERAVSIAVRGRFENAGQ 264 (456)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHhhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 45567999999999997776666542 589999999999999999999999999999999987764
No 165
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=98.71 E-value=2.9e-08 Score=107.30 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=102.1
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-.+ +...+-.|. ..+++.+.++ +++|+|+ +.+.+.+.|
T Consensus 163 ~~~P~GVv~~I~pwN-~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L 240 (512)
T cd07124 163 VYRPLGVGAVISPWN-FPLAILAGMTTAALVTGNTVVLKPAEDTPVIA-AKLVEILEEAGLPPGVVNFLPGPGEEVGDYL 240 (512)
T ss_pred EEecceEEEEECCCC-hHHHHHHHHHHHHHHcCCEEEEECCccccHHH-HHHHHHHHHhCcCCCceEEeccCchHHHHHH
Confidence 378999999994222 24321 115555666 6666877776 8999998 455677777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
-.+..+|.|...||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+.|- .|.
T Consensus 241 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~~l~~~~lElgGk~p~iV~~daDl~~Aa~~i~~~~f~~~GQ----~C~ 316 (512)
T cd07124 241 VEHPDVRFIAFTGSREVGLRIYERAAKVQPGQKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQ----KCS 316 (512)
T ss_pred hcCCCCCEEEEeCchHHHHHHHHHHhcccccccCCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhhCCC----ccc
Confidence 77778999999999999998887642 369999999999999999999999999999999997775 455
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
+...+..|+.|
T Consensus 317 a~~rv~V~~~i 327 (512)
T cd07124 317 ACSRVIVHESV 327 (512)
T ss_pred cceEEEEcHHH
Confidence 55555555444
No 166
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=98.70 E-value=3.5e-08 Score=106.40 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=99.3
Q ss_pred CCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-..- .|-. + +...+-.|+ ..+++.+.++ +++|+|+ +...+.+.|-
T Consensus 152 ~~P~GVv~~I~P~N-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~ 229 (500)
T cd07083 152 YVGLGAGVVISPWN-FPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVG-YKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLT 229 (500)
T ss_pred EeccceEEEEcCCc-cHHHHHHHHHHHHHHcCCeEEEeCCCcchHHH-HHHHHHHHHcCCCCCceEEEeCCCchhHHHHh
Confidence 78999999994211 2511 1 115556676 6777777776 9999998 3455666666
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHH
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKA 338 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~ 338 (462)
.+..||.|...||...-+.|.+.+. ..||+....|++++||+++||++.|++.++.++..+-|- .|.+
T Consensus 230 ~~~~v~~v~ftGs~~~g~~v~~~aa~~~~~~~~~~~v~lElgG~~~~iV~~dadl~~aa~~i~~~~f~~~GQ----~C~a 305 (500)
T cd07083 230 EHERIRGINFTGSLETGKKIYEAAARLAPGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQ----KCSA 305 (500)
T ss_pred cCCCcCEEEEECcHHHHHHHHHHHhhccccccccCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhhcCC----CCCC
Confidence 6788999999999999988877642 279999999999999999999999999999999875544 4555
Q ss_pred HHHhhhcccc
Q psy11677 339 IYNLADQGEM 348 (462)
Q Consensus 339 ~~~~~~~~~~ 348 (462)
...+..++.|
T Consensus 306 ~~rv~V~~~i 315 (500)
T cd07083 306 ASRLILTQGA 315 (500)
T ss_pred CeeEEEcHHH
Confidence 4444444443
No 167
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=98.69 E-value=9.2e-09 Score=109.83 Aligned_cols=132 Identities=19% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|+..- .|-.+ +.+.+-.++ ..+.+.+.++ +++|+|+. ++ +.+.|
T Consensus 134 ~~~P~Gvv~~I~p~N-~P~~~~~~~i~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~-~~~~l 210 (471)
T cd07139 134 RREPVGVVAAIVPWN-APLFLAALKIAPALAAGCTVVLKPSPETPLDA-YLLAEAAEEAGLPPGVVNVVPADRE-VGEYL 210 (471)
T ss_pred EEEeccEEEEEcCCc-hHHHHHHHHHHHHHhcCCEEEEECCCcCCHHH-HHHHHHHHHcCCCCCcEEEEeCCHH-HHHHH
Confidence 489999999998322 23211 115666777 7777888877 89999984 55 55555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
-.+..||.|...||....+.|.+.+. ..| +++.| |+..++|+++||++.|++-++.++..+-|- .|.+...+
T Consensus 211 ~~~~~i~~v~ftGs~~~g~~v~~~~~~~~~~~~lElG-G~np~iV~~dADl~~aa~~i~~~~~~~~GQ----~C~a~~~v 285 (471)
T cd07139 211 VRHPGVDKVSFTGSTAAGRRIAAVCGERLARVTLELG-GKSAAIVLDDADLDAAVPGLVPASLMNNGQ----VCVALTRI 285 (471)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCCEEEEEcC-CCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCcCCcEE
Confidence 55778999999999999888766442 245 55555 999999999999999999999999986554 45555555
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..++.|
T Consensus 286 ~V~~~i 291 (471)
T cd07139 286 LVPRSR 291 (471)
T ss_pred EEeHhH
Confidence 555443
No 168
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=98.67 E-value=9.2e-09 Score=109.69 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=96.8
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCC-C----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPR-Y----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~-~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+... .|-. + +...+-.|+ ..+++.+.+ + +++++|+ +...+.+.
T Consensus 114 ~~~P~Gvv~~I~P~N-~P~~~~~~~~~~AL~aGN~vvlKps~~~~~~~-~~l~~~~~~aag~P~g~~~~v~g~~~~~~~~ 191 (455)
T cd07120 114 LREPMGVAGIIVPWN-SPVVLLVRSLAPALAAGCTVVVKPAGQTAQIN-AAIIRILAEIPSLPAGVVNLFTESGSEGAAH 191 (455)
T ss_pred EEecceeEEEECCCc-hHHHHHHHHHHHHHHcCCEEEeECCCCChHHH-HHHHHHHHHhcCCCccceEEEecCchhHHHH
Confidence 488999999997544 3421 1 115556666 777777776 4 9999999 35556666
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|-.+..||.|...||....+.|.+.+. ..| +++.| |+..++|+++||+++|++.++.++..+.|- .|.++..
T Consensus 192 l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-G~~~~IV~~daDl~~aa~~i~~~~~~~~GQ----~C~a~~r 266 (455)
T cd07120 192 LVASPDVDVISFTGSTATGRAIMAAAAPTLKRLGLELG-GKTPCIVFDDADLDAALPKLERALTIFAGQ----FCMAGSR 266 (455)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeEEEECC-CCCeeEECCCCCHHHHHHHHHHHHHHhCCC----CCCCCeE
Confidence 666778999999999999999877642 134 45555 899999999999999999999999998775 3444444
Q ss_pred hhhccc
Q psy11677 342 LADQGE 347 (462)
Q Consensus 342 ~~~~~~ 347 (462)
+..|+.
T Consensus 267 v~V~~~ 272 (455)
T cd07120 267 VLVQRS 272 (455)
T ss_pred EEEcHH
Confidence 444443
No 169
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=98.66 E-value=2.2e-08 Score=107.19 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=97.2
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cc-c-ccccccchHHHHHhhcCCC----CeEEeec--CHHHHHH
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TV-P-KKHAKTSQCKYFTKMLPRY----PLHSQVS--TREEISD 263 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~-~-~~ea~~sn~~~l~~al~~~----~~v~~v~--~r~~~~~ 263 (462)
.+.|+ ||+++|-..- .|- |+ + ...+-.|. ..+++.+.++ +++|+|+ .++....
T Consensus 135 ~~~P~~Gvv~~I~P~N-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~ 212 (472)
T TIGR03250 135 QREPLLGVISAITPFN-HPMNQVAHKIAPAIATNNRMVVKPSEKTPLSA-LYLADILYEAGLPPQMLQVVTGDPREIADE 212 (472)
T ss_pred EEcCCCCEEEEEcCCc-HHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCCCcccEEEEecCchHHHHH
Confidence 48898 9999993211 132 11 1 15556666 6666777776 9999998 3665666
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC-CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ-HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~-~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|++ +..||.|...||...-+.|.+.+. +-+++++| |++++||++|||+++|++.++.++..+.|- .|.+...+
T Consensus 213 l~~-~~~v~~v~fTGs~~~g~~i~~~a~~~~~~lElG-Gk~p~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~rv 286 (472)
T TIGR03250 213 LIT-NPHVDLVTFTGGVAIGKYIAARAGYRRQVLELG-GNDPLIVMEDADLDRAADLAVKGSYKNSGQ----RCTAVKRM 286 (472)
T ss_pred Hhc-CCCCCEEEEECcHHHHHHHHHHhcCCceEEecC-CCCeEEECCCCCHHHHHHHHHHHHHHhhCC----CCCCCcEE
Confidence 776 667999999999999999988763 14678888 999999999999999999999999887774 34444444
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..+..|
T Consensus 287 ~V~~~i 292 (472)
T TIGR03250 287 LVQESV 292 (472)
T ss_pred EEeHhH
Confidence 444443
No 170
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=98.64 E-value=1.4e-08 Score=106.91 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=101.2
Q ss_pred CCCCceeeEEEEeCCCCccc----------------cc--ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VP--KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~--~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-. +. ...+-+|+ ..+.+.+.++ +++|+|+. ...+.+.|
T Consensus 68 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l 145 (409)
T PRK10090 68 FKRALGVTTGILPWN-FPFFLIARKMAPALLTGNTIVIKPSEFTPNNA-IAFAKIVDEIGLPKGVFNLVLGRGETVGQEL 145 (409)
T ss_pred EEecccEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHcCCCcccEEEEeCCChhHHHHH
Confidence 379999999994221 1321 11 15566777 7777777776 89999994 56677777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..+|+|.++||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+-| ..|.+...+.
T Consensus 146 ~~~~~v~~V~ftGs~~~g~~v~~~aa~~~~~~~lElgGk~p~iV~~dADld~aa~~iv~~~f~~~G----Q~C~a~~rv~ 221 (409)
T PRK10090 146 AGNPKVAMVSMTGSVSAGEKIMAAAAKNITKVCLELGGKAPAIVMDDADLDLAVKAIVDSRVINSG----QVCNCAERVY 221 (409)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEEcCCCCHHHHHHHHHHHHHHhcC----CCCCCCeEEE
Confidence 78888999999999999999876542 24665555599999999999999999999999998544 4666666666
Q ss_pred hccccc
Q psy11677 344 DQGEMD 349 (462)
Q Consensus 344 ~~~~~~ 349 (462)
.++.|.
T Consensus 222 V~~~i~ 227 (409)
T PRK10090 222 VQKGIY 227 (409)
T ss_pred EcHHHH
Confidence 666553
No 171
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=98.63 E-value=1.8e-08 Score=108.59 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=97.6
Q ss_pred CCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeec--CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVS--TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~--~r~~~~~l 264 (462)
.+.|+||+++|...- .|-.+. .+.+-.|+ ..+++.+.++ +++|+|+ +++....|
T Consensus 154 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~L 231 (494)
T PRK09847 154 VREPVGVIAAIVPWN-FPLLLTCWKLGPALAAGNSVILKPSEKSPLSA-IRLAGLAKEAGLPDGVLNVVTGFGHEAGQAL 231 (494)
T ss_pred EecceeEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEeCCCCChHHH-HHHHHHHHHcCcCcCcEEEEeCCChhHHHHH
Confidence 589999999997653 264311 15566676 6777887776 8999998 35555555
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---Ccce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIY 340 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~ 340 (462)
+ .+..+|.|.++||....+.|.+.+. ..|| ++.|..+++++++..||+++|++.++.++..+ .-..|.+..
T Consensus 232 ~-~~~~vd~v~fTGs~~~g~~v~~~aa~~~~~~~~lElGGk~~~iV~~daaDl~~Aa~~i~~~~~~~----aGQ~C~a~~ 306 (494)
T PRK09847 232 S-RHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYN----QGQVCIAGT 306 (494)
T ss_pred h-cCCCCCEEEEECCHHHHHHHHHHhhhhCCCeEEEecCCCCeeEEcCCccCHHHHHHHHHHHHHhc----CCCCCCCCc
Confidence 5 4778999999999998888777431 2455 66777777777765579999999999999885 444677777
Q ss_pred Hhhhccccc
Q psy11677 341 NLADQGEMD 349 (462)
Q Consensus 341 ~~~~~~~~~ 349 (462)
.+..|..|.
T Consensus 307 rv~V~~~i~ 315 (494)
T PRK09847 307 RLLLEESIA 315 (494)
T ss_pred EEEEcHHHH
Confidence 777666653
No 172
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=98.62 E-value=7.2e-08 Score=103.70 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=95.1
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEEeecCHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHSQVSTREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|- |+ +..++-.|+ ..+++.+.++ +++++|+....+.+.|-
T Consensus 131 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VvlKPs~~tp~t~-~~l~~l~~~aGlP~gvv~~v~g~~~~~~~L~ 208 (487)
T PRK09457 131 RHRPHGVVAVFGPYN-FPGHLPNGHIVPALLAGNTVVFKPSELTPWVA-ELTVKLWQQAGLPAGVLNLVQGGRETGKALA 208 (487)
T ss_pred EEeccEEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCcCcCeEEEEeCCHHHHHHHh
Confidence 478999999992111 131 11 116666777 6677777776 89999994334566666
Q ss_pred CCCCccEEeecCChhHHHHHHhh-C--CCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQK-S--QHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~-s--~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
.+..||.|...||..--+.|.+. + ...| +++.| |++++||++|||+++|++.++.++..+-|- .|.+...+
T Consensus 209 ~~~~v~~V~fTGS~~~G~~i~~~aa~~~~~~~~lElG-Gk~p~IV~~dADl~~aa~~i~~~~f~~~GQ----~C~a~~rv 283 (487)
T PRK09457 209 AHPDIDGLLFTGSANTGYLLHRQFAGQPEKILALEMG-GNNPLVIDEVADIDAAVHLIIQSAFISAGQ----RCTCARRL 283 (487)
T ss_pred cCCCcCEEEEECCHHHHHHHHHHHhhcCCCcEEEecC-CCCeEEECCCCCHHHHHHHHHHHHhhccCC----CCCCCceE
Confidence 67789999999999966665553 1 1244 67777 999999999999999999999999885444 56666666
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|+.|
T Consensus 284 ~V~~~i 289 (487)
T PRK09457 284 LVPQGA 289 (487)
T ss_pred EEeccc
Confidence 655554
No 173
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=98.62 E-value=4.3e-08 Score=104.61 Aligned_cols=133 Identities=22% Similarity=0.175 Sum_probs=101.2
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|-. +.. +++..|+ ..+++.+.++ +++++|+ +++....|++
T Consensus 97 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~vi~Kps~~tp~~~-~~l~~~~~~alP~gv~~~v~g~~~~~~~L~~ 174 (449)
T cd07136 97 YYEPYGVVLIIAPWN-YPFQLALAPLIGAIAAGNTAVLKPSELTPNTS-KVIAKIIEETFDEEYVAVVEGGVEENQELLD 174 (449)
T ss_pred EEecCeEEEEECCCc-hHHHHHHHHHHHHHhcCCEEEEECcccchHHH-HHHHHHHHHhCCCCEEEEEeCChHHHHHHhc
Confidence 478999999996311 1421 111 5566677 6777555554 9999999 6788888885
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
. . ||.|.++||...-+.|.+++. .+||.....|++++||++|||++.|++.+..++..+-| ..|.+...+..
T Consensus 175 ~-~-v~~V~fTGS~~~g~~i~~~aa~~~~~v~lElgGknp~iV~~dADld~aa~~i~~~~~~~~G----Q~C~a~~rv~V 248 (449)
T cd07136 175 Q-K-FDYIFFTGSVRVGKIVMEAAAKHLTPVTLELGGKSPCIVDEDANLKLAAKRIVWGKFLNAG----QTCVAPDYVLV 248 (449)
T ss_pred C-C-CCEEEEECCHHHHHHHHHHHHhcCCCEEEEecCCCeEEECCCCCHHHHHHHHHHHHHcccC----CcccCCCEEEE
Confidence 4 4 999999999999998887652 48999999999999999999999999999999887544 35666666666
Q ss_pred ccccc
Q psy11677 345 QGEMD 349 (462)
Q Consensus 345 ~~~~~ 349 (462)
|..|.
T Consensus 249 ~~~i~ 253 (449)
T cd07136 249 HESVK 253 (449)
T ss_pred cHHHH
Confidence 65543
No 174
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=98.62 E-value=7.7e-08 Score=104.16 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-.+ .. ..+-.+. ..|++.+.++ +.+|+|+ +.+.+.+.|
T Consensus 168 ~~~P~GVv~~I~PwN-~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~a-~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L 245 (514)
T PRK03137 168 FYIPLGVGVVISPWN-FPFAIMAGMTLAAIVAGNTVLLKPASDTPVIA-AKFVEVLEEAGLPAGVVNFVPGSGSEVGDYL 245 (514)
T ss_pred EEecCcEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCCCCcEEEeecCchHHHHHH
Confidence 478999999994211 24221 11 4444555 5556777776 9999998 344566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
-.+..||.|...||...-+.|.+.+. -.||+....|++++||++|||+++|++.++.+++.+.|- .|.
T Consensus 246 ~~~~~v~~V~fTGs~~~G~~i~~~aa~~~~~~~~l~~v~lElgGk~~~iV~~daDl~~Aa~~i~~~~~~~~GQ----~C~ 321 (514)
T PRK03137 246 VDHPKTRFITFTGSREVGLRIYERAAKVQPGQIWLKRVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQ----KCS 321 (514)
T ss_pred hcCCCcCEEEEECCcHHHHHHHHHHhcccccccccceEEecCCCCCeEEECCCCCHHHHHHHHHHHHHhCCCC----CCc
Confidence 67777999999999999999988763 269999999999999999999999999999999998775 355
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
++..+..++.|
T Consensus 322 a~~rv~V~~~v 332 (514)
T PRK03137 322 ACSRAIVHEDV 332 (514)
T ss_pred cCeEEEEeHHH
Confidence 55555555444
No 175
>PLN02278 succinic semialdehyde dehydrogenase
Probab=98.60 E-value=8.6e-08 Score=103.45 Aligned_cols=134 Identities=19% Similarity=0.096 Sum_probs=98.1
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
++.|+||+++|-..- .|-. +.. ..+-.|+ ..|.+.|.++ +++|+|+ +.+.+.+.|
T Consensus 157 ~~~P~GvV~~I~PwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~~l~eaglP~gvv~~v~g~~~~~~~~L 234 (498)
T PLN02278 157 LKQPVGVVGAITPWN-FPLAMITRKVGPALAAGCTVVVKPSELTPLTA-LAAAELALQAGIPPGVLNVVMGDAPEIGDAL 234 (498)
T ss_pred EeecccEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCCCcccEEEEecCChhhHHHH
Confidence 378999999994222 2421 111 4555566 6666777776 9999998 455566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|...||...-+.|.+.+. ..||..-..|++++||++|||+++|++-++.++..+.|- .|.++..+.
T Consensus 235 ~~~~~v~~V~fTGS~~~G~~i~~~aa~~~~~~~lElGGk~~~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~rv~ 310 (498)
T PLN02278 235 LASPKVRKITFTGSTAVGKKLMAGAAATVKRVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQ----TCVCANRIL 310 (498)
T ss_pred hcCCCcCEEEEECcHHHHHHHHHHHhhcCCcEEEecCCCCeeEECCCCCHHHHHHHHHHHHhccCCC----CCcCCcEEE
Confidence 56677999999999999999877652 245555556999999999999999999999999997765 555555555
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.|+.|
T Consensus 311 V~~~i 315 (498)
T PLN02278 311 VQEGI 315 (498)
T ss_pred EeHHH
Confidence 55554
No 176
>PLN02203 aldehyde dehydrogenase
Probab=98.59 E-value=7.7e-08 Score=103.56 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=121.3
Q ss_pred HHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccc-----cC----C---CCCCCCceee
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTD-----AS----A---QSGGTPVEVL 216 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~-----~~----d---~~~~~PlGVi 216 (462)
.+++.|+++.++|..+...|+-+ ++..++.++ .+.. .+ . ..++.|+||+
T Consensus 36 ~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~reP~GVv 112 (484)
T PLN02203 36 GLLRLLKDNEEAIFKALHQDLGKHRVEAYRDEVGVLTKSANLALSNLK---KWMAPKKAKLPLVAFPATAEVVPEPLGVV 112 (484)
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhccccccCCcccCCceeEEEEecccEE
Confidence 38888888888888877766543 223333232 2211 11 0 1347899999
Q ss_pred EEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC---CeEEeecCHHHHHHHhcCCCCccEEe
Q psy11677 217 AEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVSTREEISDLLSMEKHIDLII 275 (462)
Q Consensus 217 ~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~~r~~~~~ll~~~~~iDliI 275 (462)
++|-.-- .|-. +.. +.+-+|+ ..+.+.+.+. +++++|....++.+.|-.+. ||.|.
T Consensus 113 ~~I~pwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~~~~~~lP~gvv~vv~g~~~~~~~l~~~~-vd~v~ 189 (484)
T PLN02203 113 LIFSSWN-FPIGLSLEPLIGAIAAGNAVVLKPSELAPATS-AFLAANIPKYLDSKAVKVIEGGPAVGEQLLQHK-WDKIF 189 (484)
T ss_pred EEEcCCc-chHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHhCCcCEEEEEeCCHHHHHHHHhCC-CCEEE
Confidence 9995311 2421 111 5566676 6666666554 99999985444555554454 99999
Q ss_pred ecCChhHHHHHHhhCC--CcceeeeccceeEEEEcc---CCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccc
Q psy11677 276 PRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDK---DADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDV 350 (462)
Q Consensus 276 PrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~---~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (462)
.+||...-+.|.+.+. .+||+....|++++||++ +||+++|++.++.++... |....|.++..+..|..|..
T Consensus 190 fTGS~~~G~~v~~~aa~~l~~v~lElGGknp~iV~~d~~daDl~~aa~~i~~~~f~~---~aGQ~C~a~~rv~V~~~i~d 266 (484)
T PLN02203 190 FTGSPRVGRIIMTAAAKHLTPVALELGGKCPCIVDSLSSSRDTKVAVNRIVGGKWGS---CAGQACIAIDYVLVEERFAP 266 (484)
T ss_pred EECCHHHHHHHHHHHHhcCCCEEEEecCCCeEEEccCCCCCCHHHHHHHHHHHhccc---CCCCccccCCeEEEcHHHHH
Confidence 9999999998888762 489999999999999997 699999999999998851 34456777777777765543
No 177
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=98.59 E-value=6.1e-08 Score=103.63 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=94.7
Q ss_pred CCCceeeEEEEeCCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|...- .|- |+ +...+-.|. ..+.+.+.++ +++++|. +.+....|+.
T Consensus 124 ~~P~GvV~~I~PwN-~P~~~~~~~~~~ALaaGN~vv~KPs~~tp~~~-~~l~~~~~~aGlP~gv~~~v~g~~~~~~~l~~ 201 (462)
T PRK13968 124 YRPLGTILAIMPWN-FPLWQVMRGAVPILLAGNGYLLKHAPNVMGCA-QLIAQVFKDAGIPQGVYGWLNADNDGVSQMIN 201 (462)
T ss_pred EeccceEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHcCcCcCcEEEEecCchhhHHHhc
Confidence 78999999996322 242 11 114555566 6666777776 8999998 4555667665
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.. .||.|..+||..-=+.|.+.+ +-+||..--.|++++||++|||++.|++.++.++..+.|- .|.+...+..
T Consensus 202 ~~-~v~~V~fTGs~~~G~~i~~~aa~~l~~~~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 276 (462)
T PRK13968 202 DS-RIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQ----VCAAAKRFII 276 (462)
T ss_pred CC-CCCEEEEECCHHHHHHHHHHHhhcCCcEEEecCCCCceEECCCCCHHHHHHHHHHHHHhccCC----CCcCCcEEEE
Confidence 44 599999999998877776654 1356544444999999999999999999999999998875 3555555554
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|+.|
T Consensus 277 ~~~i 280 (462)
T PRK13968 277 EEGI 280 (462)
T ss_pred CHhH
Confidence 4444
No 178
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=98.55 E-value=1e-07 Score=103.08 Aligned_cols=120 Identities=20% Similarity=0.146 Sum_probs=93.0
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cccc--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TVPK--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-..- .|- |+.. +.+-.+. ..+++.+.++ +++|+|+. .+.+.+.|
T Consensus 164 ~~~P~GVV~~I~P~N-~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L 241 (511)
T TIGR01237 164 FYQPRGVAVVISPWN-FPMAIAVGMTVAPIVTGNCVVLKPAETSTVIA-AKIVEILIEAGLPPGVFQFVPGKGSEVGSYL 241 (511)
T ss_pred EEecceeEEEECCCC-cHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCCCCcEEEccCCCchhHHHH
Confidence 378999999994221 242 1111 4445555 6666777776 99999993 44566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.-.||....+.|.+++. .+||+....|++++||+++||+++|++-++.++..+.|-
T Consensus 242 ~~~~~v~~V~fTGs~~~G~~i~~~aa~~~~~~~~~~~~~lElgG~~p~iV~~dAdl~~aa~~i~~~~~~~~GQ 314 (511)
T TIGR01237 242 VNHPKTHLITFTGSREVGCRIYEDAAKVQPGQKHLKRVIAEMGGKDAIIVDESADIEQAVAGAVYSAFGFTGQ 314 (511)
T ss_pred hcCCCCCeEEEECchHHHHHHHHHHhcccccccccceeEeccCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 55678999999999999999987652 369999999999999999999999999999999998875
No 179
>PLN02467 betaine aldehyde dehydrogenase
Probab=98.54 E-value=7e-08 Score=104.32 Aligned_cols=134 Identities=21% Similarity=0.151 Sum_probs=99.8
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-.-- .|-. + +..++-.|+ ..+++.+.++ +++|+|+. ...+.+.|
T Consensus 148 ~~~P~GVv~~I~PwN-~P~~~~~~~i~~ALaaGN~Vv~Kps~~tp~~~-~~l~~~~~eag~P~gvv~~v~g~~~~~~~~L 225 (503)
T PLN02467 148 LKEPLGVVGLITPWN-YPLLMATWKVAPALAAGCTAVLKPSELASVTC-LELADICREVGLPPGVLNVVTGLGTEAGAPL 225 (503)
T ss_pred EEecCceEEEECCCC-hHHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHHcCcCcCeEEEEeCCchhHHHHH
Confidence 379999999993211 1421 1 115666777 7777777776 89999983 44455555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|...||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+-|- .|.++..+.
T Consensus 226 ~~~~~v~~v~fTGs~~~g~~v~~~aa~~~~~~~lElGG~~~~iV~~dADl~~A~~~i~~~~f~~~GQ----~C~a~~rv~ 301 (503)
T PLN02467 226 ASHPGVDKIAFTGSTATGRKIMTAAAQMVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQ----ICSATSRLL 301 (503)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHhccCCcEEEECCCCCceEECCCCCHHHHHHHHHHHHHhhcCC----CCCCCcEEE
Confidence 56778999999999999888887652 479988888999999999999999999999998765443 566666665
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.|..|
T Consensus 302 V~~~i 306 (503)
T PLN02467 302 VHERI 306 (503)
T ss_pred EcHHH
Confidence 55554
No 180
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=98.51 E-value=2.1e-07 Score=98.42 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-..- .|-. +.. ..+-.+. ..|.+.+.++ +++++|. +.+....|+.
T Consensus 94 ~~P~GvV~~I~P~N-~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~l~~aglP~gvv~~v~g~~~~~~~l~~ 171 (429)
T cd07100 94 YEPLGVVLGIMPWN-FPFWQVFRFAAPNLMAGNTVLLKHASNVPGCA-LAIEELFREAGFPEGVFQNLLIDSDQVEAIIA 171 (429)
T ss_pred EEeeeEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCCCcCcEEEEeCCchhHHHHhc
Confidence 78999999994211 2531 111 4455666 6677888876 9999998 4666777765
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--Ccce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+..||.|.-.||...-+.|.+.+. ..|+ ++.| |++++||++|||+++|++-++.++..+.|-
T Consensus 172 -~~~i~~v~fTGs~~~g~~i~~~aa~~~~~~~lelg-G~~p~iV~~daDl~~aa~~i~~~~~~~~GQ 236 (429)
T cd07100 172 -DPRVRGVTLTGSERAGRAVAAEAGKNLKKSVLELG-GSDPFIVLDDADLDKAVKTAVKGRLQNAGQ 236 (429)
T ss_pred -CCCCCEEEEECcHHHHHHHHHHHhhcCcceEEecC-CCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 456999999999999888887651 2576 6666 999999999999999999999999998876
No 181
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=98.51 E-value=9.4e-08 Score=102.45 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=89.6
Q ss_pred CCCCceeeEEEEeCCCCccccc----------------c--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP----------------K--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~----------------~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
++.|+||+++|...- .|-.+. . ..+-.|. ..+.+.+.++ +.+|+|+. .+ +.+.|
T Consensus 139 ~~~P~GVv~~I~p~N-~P~~~~~~~i~~ALaaGN~VvlKPs~~tp~~~-~~l~~~~~~aglP~gvv~~v~g~~~-~~~~L 215 (477)
T cd07113 139 RREPVGVVAGIVPWN-FSVMIAVWKIGAALATGCTIVIKPSEFTPLTL-LRVAELAKEAGIPDGVLNVVNGKGA-VGAQL 215 (477)
T ss_pred EEeecceEEEEcCCC-hHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHcCcCCCcEEEEecCch-HHHHH
Confidence 478999999997322 242111 0 3333444 4444777776 89999984 44 66666
Q ss_pred cCCCCccEEeecCChh----HHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 266 SMEKHIDLIIPRGSSD----LVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~----lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
-.+..||.|...||.. +.+.+.++ ..|+..-..|...+||++|||+++|++.++.++..+-|- .|.+...
T Consensus 216 ~~~~~v~~V~fTGS~~~G~~i~~~aa~~--~~~~~lElGGkn~~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~r 289 (477)
T cd07113 216 ISHPDVAKVSFTGSVATGKKIGRQAASD--LTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQ----VCAAPER 289 (477)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhh--cCceEeecCCCCeeEECCCCCHHHHHHHHHHHHHhhCCC----CCcCCcE
Confidence 6677899999999986 55555554 367655555555688999999999999999999875444 5555555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..+..|
T Consensus 290 v~V~~~i 296 (477)
T cd07113 290 FYVHRSK 296 (477)
T ss_pred EEECHHH
Confidence 5544443
No 182
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=98.50 E-value=3.7e-07 Score=97.37 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=89.2
Q ss_pred CCCCceeeEEEEeCCCCcccc----cc----------------cccccchHHHHH----hhcCCC----CeEEeec--CH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----PK----------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TR 258 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----~~----------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r 258 (462)
.+.|+||+++|++.- .|-.+ .+ +++-+|+ ..+. ++|.++ +++|+|+ ++
T Consensus 102 ~~~P~GvV~~I~p~N-~P~~~~~~~~~~a~ALaaGN~VVlKps~~~p~t~-~~l~~~~~~~l~~aGlP~gvv~~v~g~~~ 179 (454)
T cd07129 102 MLVPLGPVAVFGASN-FPLAFSVAGGDTASALAAGCPVVVKAHPAHPGTS-ELVARAIRAALRATGLPAGVFSLLQGGGR 179 (454)
T ss_pred EeeccceEEEECCCC-CchhhhhhhhhHHHHHHcCCeEEEEcCCCCchHH-HHHHHHHHHHHHHhCCChhheEEeeCCcH
Confidence 479999999998763 26321 11 5555666 6665 555565 8999998 35
Q ss_pred HHHHHHhcCCCCccEE----eecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC---CHHHHHHHHHcccCCCCCC
Q psy11677 259 EEISDLLSMEKHIDLI----IPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA---DIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 259 ~~~~~ll~~~~~iDli----IPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a---d~~~a~~i~~nak~~~~~~ 330 (462)
+....|++. ..||+| -+++|..+.+...+..+.+||+....|++++||++|| |+++|++.++.++..+-|-
T Consensus 180 ~~~~~L~~~-~~v~~V~fTGs~~~G~~i~~~aa~~~~~~p~~lElGG~n~~iV~~da~~~dl~~aa~~i~~~~~~~~GQ 257 (454)
T cd07129 180 EVGVALVKH-PAIKAVGFTGSRRGGRALFDAAAARPEPIPFYAELGSVNPVFILPGALAERGEAIAQGFVGSLTLGAGQ 257 (454)
T ss_pred HHHHHHhcC-CCccEEEEeCChHHHHHHHHHhhccCccceeEeecCCcCcEEEeCCcchHHHHHHHHHHHHHHhcCCCC
Confidence 666667764 579999 5555666777776631158999999999999999999 8999999999999987666
No 183
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=98.50 E-value=3e-07 Score=97.51 Aligned_cols=132 Identities=17% Similarity=0.100 Sum_probs=97.3
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------c--ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------P--KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~--~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-.+ . ...+..|+ ..+.+.+.++ +++++++ +.+....|++
T Consensus 97 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~-~~~~~~~~~a~p~g~v~~v~g~~~~~~~l~~ 174 (433)
T cd07134 97 RYEPKGVCLIISPWN-YPFNLAFGPLVSAIAAGNTAILKPSELTPHTS-AVIAKIIREAFDEDEVAVFEGDAEVAQALLE 174 (433)
T ss_pred EEecCCEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCcCEEEEEeCChhHHHHHHh
Confidence 379999999986422 24321 1 15566677 6666555554 8999998 5766667776
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
. . +|.|...||....+.|.+.+. ..|+.....|+++++|++|||+++|++.++.++..+-|- .|.+...+..
T Consensus 175 ~-~-v~~v~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~~~iV~~dAD~~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 248 (433)
T cd07134 175 L-P-FDHIFFTGSPAVGKIVMAAAAKHLASVTLELGGKSPTIVDETADLKKAAKKIAWGKFLNAGQ----TCIAPDYVFV 248 (433)
T ss_pred C-C-CCEEEEECChHHHHHHHHHHHhcCCcEEEEccCCCcEEECCCCCHHHHHHHHHHHhhcCcCC----cccCCcEEEE
Confidence 4 3 999999999999998876642 368877788999999999999999999999999997665 3444444444
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|+.|
T Consensus 249 ~~~v 252 (433)
T cd07134 249 HESV 252 (433)
T ss_pred CHHH
Confidence 4443
No 184
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=98.48 E-value=2e-07 Score=99.16 Aligned_cols=132 Identities=11% Similarity=0.061 Sum_probs=101.0
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCC-----CCeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPR-----YPLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~-----~~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+..- .|-.+ +...+..++ ..+++.+.+ .+++++|. +.+....|
T Consensus 97 ~~~P~Gvv~~I~p~N-~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~-~~l~~~l~~ag~~P~g~~~~v~g~~~~~~~l 174 (442)
T cd07084 97 YRWPYGPVLVIGAFN-FPLWIPLLQLAGALAMGNPVIVKPHTAVSIVM-QIMVRLLHYAGLLPPEDVTLINGDGKTMQAL 174 (442)
T ss_pred EeecceeEEEEcCCc-cHhHHHHHHHHHHHHcCCeEEEECCCCchHHH-HHHHHHHHHhCCCCccceEEeeCCcHHHHHH
Confidence 479999999998763 25411 004455566 666644433 38899998 44555556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC-CHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA-DIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a-d~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
+...+ +|+|..+||....+.|.+++..+||.....|++++||+++| |++.|++-++.++..+- ...|.+...+.
T Consensus 175 ~~~~~-v~~V~fTGs~~~g~~i~~~a~~~~v~lElgG~~~~iV~~dadd~~~a~~~i~~~~~~~~----GQ~C~a~~rl~ 249 (442)
T cd07084 175 LLHPN-PKMVLFTGSSRVAEKLALDAKQARIYLELAGFNWKVLGPDAQAVDYVAWQCVQDMTACS----GQKCTAQSMLF 249 (442)
T ss_pred HcCCC-CCEEEEECCHHHHHHHHHhccCCcEEEeccCcCcEEECCChhhHHHHHHHHHHHHhccc----CCeecCCcEEE
Confidence 66555 99999999999999999998547999999999999999999 69999999999988754 44777777777
Q ss_pred hccc
Q psy11677 344 DQGE 347 (462)
Q Consensus 344 ~~~~ 347 (462)
.+..
T Consensus 250 V~~~ 253 (442)
T cd07084 250 VPEN 253 (442)
T ss_pred EeCC
Confidence 6666
No 185
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=98.46 E-value=2.9e-07 Score=97.58 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=92.3
Q ss_pred CCCCceeeEEEEeCCCCccc----------------cc--ccccccchHHHHHhhcCCC----CeEEeecCHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VP--KKHAKTSQCKYFTKMLPRY----PLHSQVSTREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~--~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-. +. .+.+-.|. ..+.+.+.++ +++++|+....+.+.|-
T Consensus 94 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~-~~l~~~~~~ag~P~g~~~~v~g~~~~~~~l~ 171 (431)
T cd07095 94 RHRPHGVMAVFGPFN-FPGHLPNGHIVPALLAGNTVVFKPSELTPAVA-ELMVELWEEAGLPPGVLNLVQGGRETGEALA 171 (431)
T ss_pred EEecceEEEEECCCc-hHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHH-HHHHHHHHHhCcChhHheEEeCcHHHHHHHh
Confidence 378999999996422 2421 11 15556666 6666777775 89999984234566666
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--C-Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--Q-HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~-~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
.+..||.|...||..--+.|.+.. + ..| +++.| |++++||++|||+++|++.++.++..+-|- .|.+...+
T Consensus 172 ~~~~v~~v~ftGs~~~g~~i~~~~a~~~~~~~~lElg-G~~~~iV~~daDl~~aa~~i~~~~~~~~GQ----~C~a~~rv 246 (431)
T cd07095 172 AHEGIDGLLFTGSAATGLLLHRQFAGRPGKILALEMG-GNNPLVVWDVADIDAAAYLIVQSAFLTAGQ----RCTCARRL 246 (431)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHhhccCCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHHHhCCC----CCCCCeEE
Confidence 667799999999999777666542 1 245 55666 999999999999999999999999987665 34444444
Q ss_pred hhcc
Q psy11677 343 ADQG 346 (462)
Q Consensus 343 ~~~~ 346 (462)
..+.
T Consensus 247 ~V~~ 250 (431)
T cd07095 247 IVPD 250 (431)
T ss_pred EEcC
Confidence 4333
No 186
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=98.45 E-value=2.6e-07 Score=98.68 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=98.6
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+|||++|...- .|-. +.. ..+-.|+ ..+++.+.++ +++++|+ +.+.+.+.|
T Consensus 120 ~~~P~GVV~~I~P~N-~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~-~~l~~~~~~aglP~g~~~~v~g~~~~~~~~l 197 (459)
T cd07089 120 RREPVGVVAAITPWN-FPFFLNLAKLAPALAAGNTVVLKPAPDTPLSA-LLLGEIIAETDLPAGVVNVVTGSDNAVGEAL 197 (459)
T ss_pred EEeeccEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCCCccceEEEecCcHHHHHHH
Confidence 489999999997532 2521 111 5566677 7777877776 8999999 344466666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..+|.|...||...-+.|.+.+. ..||.....|+..++|+++||+++|++-++.+++.+-|- .|.++..+.
T Consensus 198 ~~~~~~~~v~ftGs~~~g~~v~~~aa~~~~~~~lelgG~n~~iV~~dadl~~aa~~i~~~~~~~sGQ----~C~a~~~v~ 273 (459)
T cd07089 198 TTDPRVDMVSFTGSTAVGRRIMAQAAATLKRVLLELGGKSANIVLDDADLAAAAPAAVGVCMHNAGQ----GCALTTRLL 273 (459)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHHhcCC----cccCCeEEE
Confidence 67778999999999999999888651 257765556999999999999999999999999886544 444444444
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.++.|
T Consensus 274 V~~~v 278 (459)
T cd07089 274 VPRSR 278 (459)
T ss_pred EcHHH
Confidence 44443
No 187
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=98.44 E-value=1.4e-07 Score=101.21 Aligned_cols=132 Identities=19% Similarity=0.142 Sum_probs=93.5
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-.+ +...+-.|+ ..+++.+.++ +++++|.. ...+.+.|-
T Consensus 133 ~~~P~GVV~~I~PwN-~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~-~~l~~l~~~~lP~gvv~~v~g~~~~~~~~L~ 210 (480)
T cd07559 133 FHEPLGVVGQIIPWN-FPLLMAAWKLAPALAAGNTVVLKPASQTPLSI-LVLMELIGDLLPKGVVNVVTGFGSEAGKPLA 210 (480)
T ss_pred EEeccceEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECchhhhHHH-HHHHHHHHHhCCcCeEEEEecCchHHHHHHh
Confidence 489999999997221 23211 115555666 6666555554 99999983 455767776
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--Cccee-eeccceeEEEEccCC-----CHHHHHHHHHcccCCCCCCCCchhHHH
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVL-GHAEGICHVYVDKDA-----DIRKAIKIARSGSRVLQGLNPEDRAKA 338 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi-~~~~G~ch~yvd~~a-----d~~~a~~i~~nak~~~~~~~~~~~~~~ 338 (462)
.+..||.|...||....+.|.+.+. .+||+ ++| |....+|.+|| |+++|++-++.++..+-|= .|.+
T Consensus 211 ~~~~v~~V~fTGs~~~g~~i~~~aa~~~~p~~lElG-Gk~p~iV~~dA~~~~~Dl~~aa~~i~~~~~~~~GQ----~C~a 285 (480)
T cd07559 211 SHPRIAKLAFTGSTTVGRLIMQYAAENLIPVTLELG-GKSPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGE----VCTC 285 (480)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhccCCcEEeccC-CCCeEEEcCCccccccCHHHHHHHHHHHHHhhCCC----CCCC
Confidence 7778999999999999988877652 47876 555 77777788888 9999999999998886544 4555
Q ss_pred HHHhhhccc
Q psy11677 339 IYNLADQGE 347 (462)
Q Consensus 339 ~~~~~~~~~ 347 (462)
...+..|..
T Consensus 286 ~~rv~V~~~ 294 (480)
T cd07559 286 PSRALVQES 294 (480)
T ss_pred CeEEEEcHH
Confidence 554444443
No 188
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=98.44 E-value=1.9e-07 Score=99.53 Aligned_cols=119 Identities=24% Similarity=0.242 Sum_probs=91.6
Q ss_pred CCCCceeeEEEEeCCCCcc----------------ccc--ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TVP--KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~~--~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|...- .|- |+. ...+..|+ ..+.+.+.++ +++|+++ +...+.+.|
T Consensus 117 ~~~P~Gvv~~I~P~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~l~~aglP~g~v~~v~g~~~~~~~~l 194 (451)
T cd07146 117 LREPLGVVLAITPFN-HPLNQVAHKIAPAIAANNRIVLKPSEKTPLSA-IYLADLLYEAGLPPDMLSVVTGEPGEIGDEL 194 (451)
T ss_pred EEeccceEEEEccCC-hHHHHHHHHHHHHHHcCCEEEEECCCCchHHH-HHHHHHHHHcCcCccceEEEecCchHHHHHH
Confidence 478999999993222 132 111 15556677 7777777776 9999998 344566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCCC-cceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQH-IPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~~-iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|...||....+.|.+.+.. -++++.| |++++||++|||++.|++.++.++..+.|-
T Consensus 195 ~~~~~i~~V~fTGs~~~g~~i~~~a~~~~~~lElG-G~~p~iV~~daDl~~aa~~i~~~~~~~~GQ 259 (451)
T cd07146 195 ITHPDVDLVTFTGGVAVGKAIAATAGYKRQLLELG-GNDPLIVMDDADLERAATLAVAGSYANSGQ 259 (451)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHhcCCceeeecC-CCceEEECCCCCHHHHHHHHHHHHHhhCCC
Confidence 666789999999999999999886642 4566765 999999999999999999999999998775
No 189
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=98.40 E-value=3.8e-07 Score=97.91 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=96.2
Q ss_pred CCCCceeeEEEEeCCCCccc----------------cc--ccccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VP--KKHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~--~~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-. +. ...+-.|. ..+++.+.+. +++|+|+. ...+.+.|-
T Consensus 133 ~~~P~GVV~~I~PwN-~Pl~~~~~~i~~AL~aGN~VvlKPs~~~p~~~-~~l~~~~~~~lP~g~~~~v~g~~~~~~~~l~ 210 (475)
T cd07117 133 LREPIGVVGQIIPWN-FPFLMAAWKLAPALAAGNTVVIKPSSTTSLSL-LELAKIIQDVLPKGVVNIVTGKGSKSGEYLL 210 (475)
T ss_pred EEeecceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCccCcHHH-HHHHHHHHHhCCcCcEEEEecCcHHHHHHHh
Confidence 489999999995322 2421 11 15555666 6666555544 89999984 455666555
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.+..||.|...||...-+.|.+.+ +.+|+..-..|++++||++|||+++|++-++.++..+-| ..|.+...+..
T Consensus 211 ~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElgGk~p~iV~~dADl~~aa~~i~~~~~~~~G----Q~C~a~~rv~V 286 (475)
T cd07117 211 NHPGLDKLAFTGSTEVGRDVAIAAAKKLIPATLELGGKSANIIFDDANWDKALEGAQLGILFNQG----QVCCAGSRIFV 286 (475)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhccCCcEEEeCCCCCeEEECCCCChHHHHHHHHHHHhhccC----CCCCCCeEEEE
Confidence 677899999999999877776643 147865555699999999999999999999999888544 46666666666
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..|
T Consensus 287 ~~~i 290 (475)
T cd07117 287 QEGI 290 (475)
T ss_pred eHHH
Confidence 5554
No 190
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=98.40 E-value=2.8e-07 Score=98.84 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=87.6
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHHhhcCCC---CeEEeecC--HHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY---PLHSQVST--REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~---~~v~~v~~--r~~~~~l 264 (462)
++.|+||+++|+ +.. |-.+.- ..+-.|+ ..+++.+.++ +++|+|+. ++....|
T Consensus 133 ~~~P~GVv~~I~PwN~--P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~-~~l~~l~~~alP~gvv~~v~g~~~~~~~~L 209 (479)
T cd07116 133 FHEPLGVVGQIIPWNF--PLLMATWKLAPALAAGNCVVLKPAEQTPASI-LVLMELIGDLLPPGVVNVVNGFGLEAGKPL 209 (479)
T ss_pred EEeccceEEEECCCch--HHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHHCCcCcEEEEecCchhHHHHH
Confidence 489999999998 555 743211 5556666 6666555554 99999983 5545556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--Cccee-eeccceeEEEEcc-----CCCHHHHHHHHHcccCCCCCCCCchhH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVL-GHAEGICHVYVDK-----DADIRKAIKIARSGSRVLQGLNPEDRA 336 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi-~~~~G~ch~yvd~-----~ad~~~a~~i~~nak~~~~~~~~~~~~ 336 (462)
++..+ ||.|...||...-+.|.+.+. .+||+ +.|..+++++++. +||+++|++-++.+ .. |.-..|
T Consensus 210 ~~~~~-v~~V~fTGS~~~G~~i~~~aa~~~~p~~lElGGk~p~iV~~da~~~~~adl~~A~~~i~~~-~~----~~GQ~C 283 (479)
T cd07116 210 ASSKR-IAKVAFTGETTTGRLIMQYASENIIPVTLELGGKSPNIFFADVMDADDAFFDKALEGFVMF-AL----NQGEVC 283 (479)
T ss_pred hcCCC-cCEEEEECCHHHHHHHHHHHHcCCCeEEEECCCCCeEEEecCcccccccCHHHHHHHHHHH-Hh----cCCCCC
Confidence 65544 999999999976655554431 36885 7776666666654 48999999977653 22 344556
Q ss_pred HHHHHhhhccccc
Q psy11677 337 KAIYNLADQGEMD 349 (462)
Q Consensus 337 ~~~~~~~~~~~~~ 349 (462)
.+...+..|..|.
T Consensus 284 ~a~~rv~V~~~i~ 296 (479)
T cd07116 284 TCPSRALIQESIY 296 (479)
T ss_pred CCCeEEEEcHHHH
Confidence 6666665555543
No 191
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=98.40 E-value=1.8e-06 Score=94.44 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=94.5
Q ss_pred CCCCceeeEEEEeCCCCc------c----------cccc--cccccchHHH----HHhhcCCC----CeEEeecC-H-HH
Q psy11677 209 GGTPVEVLAEIWKNETLN------T----------TVPK--KHAKTSQCKY----FTKMLPRY----PLHSQVST-R-EE 260 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~P------n----------v~~~--~ea~~sn~~~----l~~al~~~----~~v~~v~~-r-~~ 260 (462)
.++|+||+++|--.- .| . |+.. ..+..|+ .. +.+.|.++ ++||+|+. . +.
T Consensus 190 ~~~P~GVv~vI~p~n-fP~~~~~~~i~~ALaaGN~VVvKPs~~a~ls~-~~~~~~i~~~l~eAGlP~gvv~~v~g~~~~~ 267 (549)
T cd07127 190 TVVPRGVALVIGCST-FPTWNGYPGLFASLATGNPVIVKPHPAAILPL-AITVQVAREVLAEAGFDPNLVTLAADTPEEP 267 (549)
T ss_pred EEecccEEEEEeCcC-ChHHHHHHHHHHHHhcCCeEEEECCcccchhH-HHHHHHHHHHHHHcCcCcccEEEEeCCCcHH
Confidence 478999999993221 12 1 1111 5666665 32 33778777 89999983 2 45
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+.+.|-.+..||.|...||...-+.|.+++...||+....|+.+++|+++||++.|++.++-++..+-|=
T Consensus 268 ~~~~L~~~p~v~~I~FTGS~~~G~~i~~~a~~~~v~~ElGGkn~~IV~~dADl~~aa~~i~~~~f~~sGQ 337 (549)
T cd07127 268 IAQTLATRPEVRIIDFTGSNAFGDWLEANARQAQVYTEKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQ 337 (549)
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHhccCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHccCCC
Confidence 6666666777999999999999999999887679999999999999999999999999999999998877
No 192
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=98.36 E-value=5.5e-07 Score=106.35 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=121.8
Q ss_pred HHHHHHhCCchhhcCchhcH-----HH---HHHHHhhccccccccccCC----CCCCCCceeeEEEEeCCCCcccc----
Q psy11677 166 SATWALDRGVSVVICNGMQK-----EA---IKQIVAGRKIGTFFTDASA----QSGGTPVEVLAEIWKNETLNTTV---- 229 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~-----~~---~~~~~~~~~i~t~~a~~~d----~~~~~PlGVi~~IyEsr~~Pnv~---- 229 (462)
+|+.|+.+.+++...=..+. ++ +...++.++ ..+.... ...+.|+||+++|-.-- .|=.+
T Consensus 713 ~Adlle~~~~eL~~l~~~EaGKt~~~A~~EV~eaidflr---yyA~~a~~~~~~~~~~PlGVV~~IsPWN-FPlai~~g~ 788 (1318)
T PRK11809 713 AADLMEAQMQTLMGLLVREAGKTFSNAIAEVREAVDFLR---YYAGQVRDDFDNDTHRPLGPVVCISPWN-FPLAIFTGQ 788 (1318)
T ss_pred HHHHHHHCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCCceeecccEEEEECCCc-cHHHHHHHH
Confidence 77777777777654322211 11 344444444 2222211 13478999999995211 13211
Q ss_pred -----------cccccccchH--HHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC-
Q psy11677 230 -----------PKKHAKTSQC--KYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS- 290 (462)
Q Consensus 230 -----------~~~ea~~sn~--~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s- 290 (462)
+=|-+-.|.+ ..+++.+.++ +++|+|+ +.+.+.+.|-.+..||.|+..||...-+.|.+.+
T Consensus 789 iaaALaAGN~VV~KPseqTpl~a~~lv~ll~eAGlP~gvlqlv~G~g~~vg~~Lv~~p~V~~V~FTGSt~tg~~I~~~aA 868 (1318)
T PRK11809 789 VAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGVVQLLPGRGETVGAALVADARVRGVMFTGSTEVARLLQRNLA 868 (1318)
T ss_pred HHHHHHcCCeEEEeCCCCcHHHHHHHHHHHHHhCcCcCeEEEeeCCcHHHHHHHhcCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 1144444431 2333777776 9999999 4667888888888899999999999999988762
Q ss_pred -------CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChhhH
Q psy11677 291 -------QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCL 356 (462)
Q Consensus 291 -------~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (462)
+.+|++....|++.++||.|||++.|++-++.|..++-|= +|.++..+..|+.|...+..+|
T Consensus 869 ~~l~~~g~~~pliaElGGkNa~IVdsdAdle~Av~~iv~sAF~~aGQ----rCsA~~rl~V~e~Iad~fl~~L 937 (1318)
T PRK11809 869 GRLDPQGRPIPLIAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQ----RCSALRVLCLQDDVADRTLKML 937 (1318)
T ss_pred hhcccccCceeEEEecCCccceEECCCCCHHHHHHHHHHHHHhcCCC----ccccCcEEEEcHHHHHHHHHHH
Confidence 1279999999999999999999999999998877664433 5777777777776654444433
No 193
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=98.35 E-value=9.2e-07 Score=104.16 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcC-----chhcHHH---HHHHHhhccccccccc----c
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVIC-----NGMQKEA---IKQIVAGRKIGTFFTD----A 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~A-----N~~D~~~---~~~~~~~~~i~t~~a~----~ 204 (462)
+......|++|.+.... +|+.|..+++++... +..-.++ +...++.++ ..+. +
T Consensus 592 v~~Av~aA~~A~~~W~~~~~~~Ra~iL~raAdll~~~~~eL~~l~~~E~GKt~~ea~~Ev~eaid~lr---~ya~~a~~~ 668 (1208)
T PRK11905 592 VERALAAAQAAFPEWSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLANAIAEVREAVDFLR---YYAAQARRL 668 (1208)
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45555556665543322 777777777665432 2111111 333333333 2222 1
Q ss_pred CCCCCCCCceeeEEEEeCCCCcccc---------------cc---cccccchHHHHHhhcCCC----CeEEeecC-HHHH
Q psy11677 205 SAQSGGTPVEVLAEIWKNETLNTTV---------------PK---KHAKTSQCKYFTKMLPRY----PLHSQVST-REEI 261 (462)
Q Consensus 205 ~d~~~~~PlGVi~~IyEsr~~Pnv~---------------~~---~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~ 261 (462)
.....+.|+||+++|-.-- .|-.+ += ..+-.+. ..+++.+.++ +++|+|+. .+.+
T Consensus 669 ~~~~~~~P~GVv~~IsPwN-fPlai~~g~i~aALaaGN~VV~KPse~tpl~a-~~l~~ll~eAGlP~gvl~lV~G~g~~v 746 (1208)
T PRK11905 669 LNGPGHKPLGPVVCISPWN-FPLAIFTGQIAAALVAGNTVLAKPAEQTPLIA-ARAVRLLHEAGVPKDALQLLPGDGRTV 746 (1208)
T ss_pred cCCceecCccEEEEEcCCc-CHHHHHHHHHHHHHHcCCEEEEeCCcccHHHH-HHHHHHHHHcCCCcccEEEeeCCchHH
Confidence 1234578999999995211 14211 11 3333444 4445777776 99999994 5557
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhC-----CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKS-----QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRA 336 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s-----~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~ 336 (462)
.+.|-.+..||.|+..||...-+.|.+.. ..+|++.-..|.+.++||+|||+++|++-++.|+.++.|= +|
T Consensus 747 g~~Lv~~p~v~~V~FTGSt~vg~~I~~~~A~~~~~~~pli~ElGGkN~~IV~~dAdle~Av~~iv~saF~~aGQ----~C 822 (1208)
T PRK11905 747 GAALVADPRIAGVMFTGSTEVARLIQRTLAKRSGPPVPLIAETGGQNAMIVDSSALPEQVVADVIASAFDSAGQ----RC 822 (1208)
T ss_pred HHHHHcCCCcCEEEEeCCHHHHHHHHHHHHhhcCCCCeEEEecCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCC----cc
Confidence 77777778899999999999888877752 1389999999999999999999999999999998887665 56
Q ss_pred HHHHHhhhccccc
Q psy11677 337 KAIYNLADQGEMD 349 (462)
Q Consensus 337 ~~~~~~~~~~~~~ 349 (462)
.|...+..|+.|.
T Consensus 823 sA~~rl~V~~si~ 835 (1208)
T PRK11905 823 SALRVLCLQEDVA 835 (1208)
T ss_pred ccCcEEEEehhHH
Confidence 6666665665553
No 194
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=98.32 E-value=2.7e-06 Score=93.01 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=106.5
Q ss_pred CCCceeeEEEEeCCCCcc----------------cccc--cccccchHH----HHHhhcCCC----CeEEeecC--HHHH
Q psy11677 210 GTPVEVLAEIWKNETLNT----------------TVPK--KHAKTSQCK----YFTKMLPRY----PLHSQVST--REEI 261 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~----~l~~al~~~----~~v~~v~~--r~~~ 261 (462)
+.|+||+++|-..- .|- |+.. ..+..|+ . .+.+.|.++ ++||+|+. .+.+
T Consensus 191 ~~P~GVv~vI~PwN-fP~~~~~~~l~~ALaaGN~VVlKPs~~tpl~~-~~~~~~l~e~l~eAGlP~gvv~lv~g~~g~~~ 268 (551)
T TIGR02288 191 IVPRGIALVIGCST-FPTWNTYPGLFASLATGNPVLVKPHPGAILPL-ALTVQVAREVLGEAGFDPNLVTLAAFDPGHEA 268 (551)
T ss_pred EEecCeEEEEcCcc-cHHHHHHHHHHHHHHcCCeEEEECCcccchhH-HHHHHHHHHHHHHcCcChhHEEEecCCCcHHH
Confidence 68999999993111 132 1111 4444444 3 233777776 99999984 4556
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.+.|-.+..||.|--.||...=+.|.+++...||..-..|+++++|++|||++.|++-++.++..+-|= -|
T Consensus 269 ~~~L~~~p~v~~I~FTGSt~~G~~I~~~aa~~~v~lElGGknp~IV~~dADld~aa~~i~~~~f~~sGQ---------~C 339 (551)
T TIGR02288 269 AQRLATDPAVRIIDFTGSNAFGQWLEQNARQAQVYTEKAGVNTVIIESTDDYKAMLRNLAFSLSLYSGQ---------MC 339 (551)
T ss_pred HHHHHhCCCccEEEEECCHHHHHHHHHhcccCcEEeecCCcCeEEEcCCCCHHHHHHHHHHHHHhhCCC---------CC
Confidence 666666777999999999999999999886689999999999999999999999999999999998777 55
Q ss_pred hhhcccc-cc----------cChhhHHHHHHhHHHH
Q psy11677 342 LADQGEM-DV----------SGLPCLLLFIRLGSLF 366 (462)
Q Consensus 342 ~~~~~~~-~~----------~~~~~~~~~~~~~~~~ 366 (462)
.+-|-++ .. ++.+.+.+|.+....+
T Consensus 340 ta~~ri~V~~~~i~~~~g~~i~def~~~L~~~~~~l 375 (551)
T TIGR02288 340 TTTQAILVPRDGIRTDQGRKSYDEVAADLATAIDGL 375 (551)
T ss_pred CCCCEEEEeccccccccchhHHHHHHHHHHHHHHHh
Confidence 5555544 21 3556666655544444
No 195
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=98.29 E-value=2.9e-06 Score=95.48 Aligned_cols=95 Identities=34% Similarity=0.527 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHH
Q psy11677 362 LGSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGL 441 (462)
Q Consensus 362 ~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l 441 (462)
+...++.+|++|.+..+.++.++|.++|+++++.|++++++|.+||.||+..++..+++..+++||.++..+++.+++.+
T Consensus 287 ~~~~~~~~A~~A~~~w~~~~~~~R~~~L~~la~~l~~~~eei~~e~gkdl~~a~~~~~~~~~~~el~~~~~ei~~~~~~l 366 (715)
T TIGR01092 287 GERDMAVAARESSRMLQALSSEQRKEILHDIADALEDNEDEILAENKKDVAAAQGAGYAASLVARLSMSPSKISSLAISL 366 (715)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCcchhHHHHHhCCHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHhCCCCCcccchh
Q psy11677 442 KQIAESSHTNVGKFVK 457 (462)
Q Consensus 442 ~~ia~l~dDPvg~v~~ 457 (462)
+..++.. +|+|++..
T Consensus 367 ~~~a~~~-~~~g~~~~ 381 (715)
T TIGR01092 367 RQLAAME-DPIGRVLK 381 (715)
T ss_pred HHHhcCC-Cccccccc
Confidence 9999988 79998763
No 196
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=98.23 E-value=2e-06 Score=92.75 Aligned_cols=136 Identities=24% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|..-- .|-. +.. ..+-.|+ ..+.+.+.+. +.+++|. ..+....|+.
T Consensus 109 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKPse~tp~~~-~~l~~l~~~~lp~gvv~vv~G~~~~~~~l~~ 186 (484)
T PLN02174 109 VSEPLGVVLVISAWN-YPFLLSIDPVIGAISAGNAVVLKPSELAPASS-ALLAKLLEQYLDSSAVRVVEGAVTETTALLE 186 (484)
T ss_pred EEecceEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH-HHHHHHHHHhCCCCEEEEEECChHHHHHHhc
Confidence 489999999997431 1531 111 4455666 6666655554 9999998 5666777886
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccC-CCCCCCCchhHHHHHHhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR-VLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~-~~~~~~~~~~~~~~~~~~ 343 (462)
..+|.|.-.||...-+.|.+.+ +..||..--.|.++++|++|||+++|++-++.+|. .+-| ..|.+...+.
T Consensus 187 --~~vd~V~FTGS~~~G~~I~~~aa~~l~~v~LELGGk~p~iV~~dADl~~Aa~~i~~g~f~~n~G----Q~C~a~~rv~ 260 (484)
T PLN02174 187 --QKWDKIFYTGSSKIGRVIMAAAAKHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIAGKWGCNNG----QACISPDYIL 260 (484)
T ss_pred --ccCCEEEEECChHHHHHHHHHHHhcCCcEEEecCCCCeEEEcCCCCHHHHHHHHHHHHhhCCCC----CCCCcCcEEE
Confidence 5699999999999888887764 24899999999999999999999999999999996 3333 3566665555
Q ss_pred hcccccccC
Q psy11677 344 DQGEMDVSG 352 (462)
Q Consensus 344 ~~~~~~~~~ 352 (462)
.+..|...+
T Consensus 261 V~~~i~d~f 269 (484)
T PLN02174 261 TTKEYAPKV 269 (484)
T ss_pred EeHHHHHHH
Confidence 555543333
No 197
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=98.22 E-value=1.2e-06 Score=93.60 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=93.7
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-. +.. ..+-+|+ ..|++.+.++ +++++|+ +.+.+.+.|
T Consensus 121 ~~~P~GvV~~i~p~N-~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~-~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l 198 (462)
T cd07112 121 TREPLGVVGAVVPWN-FPLLMAAWKIAPALAAGNSVVLKPAEQSPLTA-LRLAELALEAGLPAGVLNVVPGFGHTAGEAL 198 (462)
T ss_pred EEeeeeeEEEECCCc-hHHHHHHHHHHHHHHcCCeeeeeCCCCCCHHH-HHHHHHHHhcCCCCCcEEEEeCCCchHHHHH
Confidence 478999999995322 2421 111 5666777 7777888777 8999998 345577777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCC-CHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDA-DIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~a-d~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
-.+..+|.|...||...-+.|.+.+ +..||+.-..|...++|+++| |+++|++.++.++..+-|- .|.++..
T Consensus 199 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~~lelgG~n~~iV~~da~dl~~aa~~i~~~~~~~~GQ----~C~a~~~ 274 (462)
T cd07112 199 GLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECGGKSPNIVFADAPDLDAAAEAAAAGIFWNQGE----VCSAGSR 274 (462)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHHhcCCEEEecCCCCCeEEECCCCcCHHHHHHHHHHHHHhccCC----CCCCCee
Confidence 7778899999999998666655522 136664444466677777788 9999999999999986554 4555555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..++.+
T Consensus 275 v~V~~~v 281 (462)
T cd07112 275 LLVHESI 281 (462)
T ss_pred EEEcHHH
Confidence 5544443
No 198
>KOG0456|consensus
Probab=98.16 E-value=1.4e-06 Score=89.85 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=77.2
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|--|+.++..+|+|-+-+|.|||||+++||+ -|.|++++.++++|+.+++- -++.+... ...+.+.+..
T Consensus 283 G~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY-fGaqVlHP------~sM~~~~~~~ 355 (559)
T KOG0456|consen 283 GGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY-FGAQVLHP------FSMRPAREGR 355 (559)
T ss_pred CchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh-hhhhhccc------cccchhhccC
Confidence 7899999999999999999999999999999998 89999999999999977641 12233322 1344567778
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
+|+.|-|...|- +.||.|.++..
T Consensus 356 IPvRvKN~~NP~---------~~GTvI~~d~~ 378 (559)
T KOG0456|consen 356 IPVRVKNSYNPT---------APGTVITPDRD 378 (559)
T ss_pred cceEeecCCCCC---------CCceEeccchh
Confidence 899999988873 56999998754
No 199
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=98.15 E-value=9.6e-06 Score=91.39 Aligned_cols=94 Identities=32% Similarity=0.518 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 363 GSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 363 ~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
--.++++|++|.+..+.++.++|.++|+++|+.|++++++|.++|.+|++.+++.|.+.++.+|+.++...++.+++.++
T Consensus 296 ~~~~~~aA~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~~~~~~ 375 (718)
T PLN02418 296 AREMAVAARESSRKLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASLAASIR 375 (718)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHHHHHHH
Confidence 44557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcccchh
Q psy11677 443 QIAESSHTNVGKFVK 457 (462)
Q Consensus 443 ~ia~l~dDPvg~v~~ 457 (462)
..|.+. +|+|++..
T Consensus 376 ~~a~~~-~~~g~~~~ 389 (718)
T PLN02418 376 QLADME-DPIGRVLK 389 (718)
T ss_pred HHhcCc-cccCcccc
Confidence 999998 79998764
No 200
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=98.15 E-value=9.6e-06 Score=85.46 Aligned_cols=86 Identities=34% Similarity=0.565 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHHhCCC
Q psy11677 370 TRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIAESSH 449 (462)
Q Consensus 370 Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia~l~d 449 (462)
|++|....+.++.++|.++|+++|+.|++++++|.++|.+|++.+++.|.+.++.++|.++..+++.+++.++..+...
T Consensus 1 a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~~ev~~~~~~~~~~a~~a- 79 (398)
T TIGR00407 1 AKQAANILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTEGRLKGIADGVKDVIELA- 79 (398)
T ss_pred ChhHHHHHHhCCHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHhcCC-
Confidence 5778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccch
Q psy11677 450 TNVGKFV 456 (462)
Q Consensus 450 DPvg~v~ 456 (462)
+++|+++
T Consensus 80 ~~~g~~~ 86 (398)
T TIGR00407 80 DPVGKVI 86 (398)
T ss_pred CCCcccc
Confidence 7988755
No 201
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=98.14 E-value=5e-06 Score=96.84 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=100.6
Q ss_pred CCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-.-- .|-. +.. ..+-.+. ..+++.+.++ +++|+|+ +.+.+.+.|-
T Consensus 682 ~~P~GVv~~IsPwN-fPlai~~~~i~aALaaGNtVIlKPse~tpl~a-~~l~~ll~eAGlP~gvl~lv~G~g~~vg~~Lv 759 (1038)
T PRK11904 682 LHGRGVFVCISPWN-FPLAIFLGQVAAALAAGNTVIAKPAEQTPLIA-AEAVKLLHEAGIPKDVLQLLPGDGATVGAALT 759 (1038)
T ss_pred EecceEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEeeCCCcCHHHH-HHHHHHHHHhCcCcceEEEeeCCchHHHHHHh
Confidence 58999999994221 1421 111 3333454 5555777776 9999999 4666777777
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.+..||.|+..||...-+.|.+... .+|++.-..|.+.++||+|||+++|++-++.|+..+-|= +|.|...
T Consensus 760 ~~p~v~~V~FTGS~~~g~~I~~~~A~~~g~~~pvi~ElGGkNa~IV~~dAdld~Av~~iv~saF~~aGQ----~CsA~~r 835 (1038)
T PRK11904 760 ADPRIAGVAFTGSTETARIINRTLAARDGPIVPLIAETGGQNAMIVDSTALPEQVVDDVVTSAFRSAGQ----RCSALRV 835 (1038)
T ss_pred cCCCcCeEEEECCHHHHHHHHHHHhhccCCCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHHhCCCC----ccccCcE
Confidence 7788999999999999988865321 379999999999999999999999999999999885544 6777776
Q ss_pred hhhcccccc
Q psy11677 342 LADQGEMDV 350 (462)
Q Consensus 342 ~~~~~~~~~ 350 (462)
+..|+.|..
T Consensus 836 l~V~~si~d 844 (1038)
T PRK11904 836 LFVQEDIAD 844 (1038)
T ss_pred EEEeHHHHH
Confidence 666666543
No 202
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=98.05 E-value=6.5e-06 Score=89.54 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=95.6
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cccc-cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TVPK-KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~~~-~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+ ||+++|-.-- .|- |.+- ..+-.|. ..|++.+.++ +.+++|. +.+.+.+.|
T Consensus 166 ~~~P~~GVv~~I~PwN-fP~~~~~~~~~palaGN~VVlKPs~~tp~~~-~~l~~~l~~aGlP~gvv~vv~g~~~~~g~~L 243 (522)
T cd07123 166 EYRPLEGFVYAVSPFN-FTAIGGNLAGAPALMGNVVLWKPSDTAVLSN-YLVYKILEEAGLPPGVINFVPGDGPVVGDTV 243 (522)
T ss_pred EEecCCceEEEECCcc-cHHHHHHHHHHHHHhCCEEEEECCCCCCHHH-HHHHHHHHHcCcCCCcEEEEecCchHHHHHH
Confidence 47898 9999993211 131 1111 4444455 5566777776 9999998 455677777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--C------cceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--H------IPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~------iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
-.+..||.|.-.||..--+.|.+.+- - .||.....|+++++|++|||+++|++-++.++..+.|= .|.
T Consensus 244 ~~~~~v~~V~FTGS~~~G~~i~~~aa~~l~~~~~~~~v~lElGGkn~~IV~~dAdl~~Aa~~i~~~~f~~aGQ----~C~ 319 (522)
T cd07123 244 LASPHLAGLHFTGSTPTFKSLWKQIGENLDRYRTYPRIVGETGGKNFHLVHPSADVDSLVTATVRGAFEYQGQ----KCS 319 (522)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHhhcccccccCCEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCC
Confidence 67778999999999876666655431 1 28999999999999999999999999999999887664 344
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
+...+..|..|
T Consensus 320 a~~rv~V~~~i 330 (522)
T cd07123 320 AASRAYVPESL 330 (522)
T ss_pred CCcEEEEcHHH
Confidence 44444444443
No 203
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=97.90 E-value=2.6e-05 Score=84.47 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=88.6
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
++.|+||+++|-.-- .|-.+ .. ..+-.|. ..+++.+.++ +++++|+ +...+.+.|
T Consensus 155 ~~~P~GVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L 232 (501)
T PLN02766 155 LKEPIGVVGHIIPWN-FPSTMFFMKVAPALAAGCTMVVKPAEQTPLSA-LFYAHLAKLAGVPDGVINVVTGFGPTAGAAI 232 (501)
T ss_pred EeccceEEEEECCCC-ChHHHHHHHHHHHHHcCCEEEEeCCCCchHHH-HHHHHHHHhcCCCcCcEEEEecCchHHHHHH
Confidence 489999999994221 25321 11 4444555 5555777776 8999998 344455655
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.=.||..-=+.|.+.+. ..||..-..|+..++|++|||+++|++-++.++...-|-
T Consensus 233 ~~~p~v~~V~FTGS~~~G~~i~~~aa~~~l~~~~lElGGknp~iV~~dADl~~Aa~~i~~g~f~n~GQ 300 (501)
T PLN02766 233 ASHMDVDKVSFTGSTEVGRKIMQAAATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGE 300 (501)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHhhhcCCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhhcCC
Confidence 55556999999999998776666431 379877777999999999999999999999999887665
No 204
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=97.89 E-value=1.4e-05 Score=86.10 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=93.5
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-.+ .. ..+-.+. ..+.+.+.++ +.+++|. +.+.+.+.|
T Consensus 143 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aglP~gvv~vv~g~~~~~~~~l 220 (482)
T PRK11241 143 IKQPIGVTAAITPWN-FPAAMITRKAGPALAAGCTMVLKPASQTPFSA-LALAELAIRAGIPAGVFNVVTGSAGAVGGEL 220 (482)
T ss_pred EEeeceEEEEECCCc-ChHHHHHHHHHHHHHhCCEEEEECCCCChHHH-HHHHHHHHHcCCCcccEEEEecCCchhHHHH
Confidence 478999999995322 24311 11 3344454 4555777776 8999998 334454544
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|.=.||..-=+.|.+.+. ..||..-..|+..++|++|||++.|++-++.++..+-|= .|.+...+.
T Consensus 221 ~~~~~v~~v~FTGS~~~G~~i~~~aa~~l~~~~lElGGknp~IV~~dADld~aa~~i~~~~f~~aGQ----~C~a~~ri~ 296 (482)
T PRK11241 221 TSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQ----TCVCANRLY 296 (482)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEECCCCCeEEEcCCCCHHHHHHHHHHHHHhcCCC----CCccCeEEE
Confidence 44667999999999997777665531 368777777999999999999999999999999986665 455544444
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.++.|
T Consensus 297 V~~~i 301 (482)
T PRK11241 297 VQDGV 301 (482)
T ss_pred EeHHH
Confidence 44443
No 205
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=97.81 E-value=0.00014 Score=77.11 Aligned_cols=92 Identities=32% Similarity=0.525 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
-..++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|+.+.++.|+++++.+++..+...++.+++.++.
T Consensus 7 ~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~~~~~~~~ 86 (417)
T PRK00197 7 EELGRRAKAASRKLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEGIAEGLRQ 86 (417)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccch
Q psy11677 444 IAESSHTNVGKFV 456 (462)
Q Consensus 444 ia~l~dDPvg~v~ 456 (462)
.+.++ +++|+..
T Consensus 87 ~a~~~-~~~g~~~ 98 (417)
T PRK00197 87 VAALP-DPVGEVL 98 (417)
T ss_pred HhhcC-CCccccc
Confidence 99998 6887764
No 206
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=97.73 E-value=0.00023 Score=75.19 Aligned_cols=90 Identities=33% Similarity=0.607 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
+++.|+.|.+..+.++.++|.++|.++++.|.+++++|..++.+|+.+.++.|.+.++.++|......++.+++.++..+
T Consensus 3 ~~~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~~~~a 82 (406)
T cd07079 3 LAKRAKAASRALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGLRQVA 82 (406)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hCCCCCcccch
Q psy11677 446 ESSHTNVGKFV 456 (462)
Q Consensus 446 ~l~dDPvg~v~ 456 (462)
.++ +++|++.
T Consensus 83 ~~~-~~~g~~~ 92 (406)
T cd07079 83 ALP-DPVGEVL 92 (406)
T ss_pred hcC-CCCcccc
Confidence 888 6877654
No 207
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=97.73 E-value=0.00013 Score=78.48 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=86.3
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c-cc-cccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V-PK-KHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~-~~-~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|-. + +- ..+-.|. ..+++.+.+. +.+++|+. -+.+.+.|-
T Consensus 134 ~~~P~GVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~-~~l~~l~~~~lP~gv~~~v~g~~~~~~~~L~ 211 (472)
T TIGR03374 134 RRDPLGVVASIAPWN-YPLMMAAWKLAPALAAGNCVVLKPSEITPLTA-LKLAELAKDIFPAGVVNILFGRGKTVGDPLT 211 (472)
T ss_pred EEecceEEEEECCCC-chHHHHHHHHHHHHhcCCEEEecCCCCCCHHH-HHHHHHHHHhCCcCeEEEEecCchhHHHHHh
Confidence 489999999995322 2421 1 11 3344454 5555555444 99999983 444555555
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.+..||.|-=.||..--+.|.+.+. -.||..=..|+..++|++|||+++|++-++.++..+-|-
T Consensus 212 ~~~~v~~V~fTGS~~~G~~i~~~aa~~~~~~~lElGGk~p~iV~~dadl~~aa~~i~~~~~~~~GQ 277 (472)
T TIGR03374 212 GHEKVRMVSLTGSIATGEHILSHTAPSIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQ 277 (472)
T ss_pred cCCCcCEEEEECCHHHHHHHHHHHhhcccceEEecCCCCeeEECCCCCHHHHHHHHHHHHHhhcCC
Confidence 5666999999999999988876542 366665555999999999999999999999998887665
No 208
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=97.54 E-value=0.00025 Score=78.49 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-.-- .|-. +.. ..+-.|. ..+++.+.++ +++++|. +.+.... |
T Consensus 246 ~reP~GVV~~I~PwN-fPl~l~~~~iapALaAGNtVVlKPSe~tp~ta-~~l~~l~~eAGlP~GvvnvV~G~~~~~~~-L 322 (604)
T PLN02419 246 IREPLGVCAGICPFN-FPAMIPLWMFPVAVTCGNTFILKPSEKDPGAS-VILAELAMEAGLPDGVLNIVHGTNDTVNA-I 322 (604)
T ss_pred EecCccEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHHhCcCcceEEEEeCChHHHHH-H
Confidence 378999999993111 1421 111 3334555 5566777776 9999998 4554444 4
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|-=.||..-=+.|.+.+ +..||.--..|...++|++|||++.|++-++.++..+-|=
T Consensus 323 ~~~~~Vd~V~FTGSt~vG~~I~~~Aa~~lk~v~LELGGknp~IV~~DADld~Aa~~iv~g~f~naGQ 389 (604)
T PLN02419 323 CDDEDIRAVSFVGSNTAGMHIYARAAAKGKRIQSNMGAKNHGLVLPDANIDATLNALLAAGFGAAGQ 389 (604)
T ss_pred HhCCCCCEEEEeCChHHHHHHHHHHhccCCcEEEecCCCCeEEEcCCCCHHHHHHHHHHHHHhhCCC
Confidence 4566799999999888777666543 1478887778888999999999999999999999887665
No 209
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=97.43 E-value=0.0003 Score=75.78 Aligned_cols=181 Identities=18% Similarity=0.135 Sum_probs=111.9
Q ss_pred CCCCceeeEEEEeCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|..-- .|-.+.- +.+-.|. ..|++.+.++ +.+++|+. ...+.+-|
T Consensus 130 ~~~P~GVv~~I~PwN-fP~~~~~~k~apALaaGntVV~KPse~tp~sa-~~l~~~~~~aglP~Gv~nvv~g~~~~~g~~l 207 (472)
T COG1012 130 RREPLGVVGAITPWN-FPLALAAWKLAPALAAGNTVVLKPSEQTPLSA-LALAELAAEAGLPAGVLNVVTGGGAEVGDAL 207 (472)
T ss_pred EeecceEEEEECCCC-CHHHHHHhhHHHHHHcCCEEEEECcccCcHHH-HHHHHHHHHhCCCCCeEEEEeCCCchHHHHH
Confidence 499999999996433 3542111 3334444 5555555444 88999983 23355555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|-=.||..-=+.|.+.+ +..||..=..|+-.++|.+|||++.|++-++.++....|= .|.+..-+.
T Consensus 208 ~~~p~v~~i~FTGSt~~G~~i~~~Aa~~~k~~~lELGGk~p~IV~~dAdl~~Av~~~~~g~f~n~GQ----~C~a~~R~~ 283 (472)
T COG1012 208 VAHPDVDAISFTGSTAVGRAIAAAAAANLKPVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQ----RCTAASRLI 283 (472)
T ss_pred hcCCCCCEEEEECChHHHHHHHHHHhhcCCcEEEECCCCCCeEECCCCCHHHHHHHHHHHHHhCCCC----CccCCeEEE
Confidence 5566799999999655555554444 3689999999999999999999999999999999998777 333333333
Q ss_pred hcccccccChhhHHHHHHhHHHHHHHH--HHHHHHHh-cCCHHHHHHHHHHHHHHHHhc
Q psy11677 344 DQGEMDVSGLPCLLLFIRLGSLFISGT--RSGSRVLQ-GLNPEDRAKAIYNLADLLISK 399 (462)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~A--r~As~~L~-~ls~~~rn~aL~~iA~~L~~~ 399 (462)
.+..| +.....+|.+. ...++-- ..-...+. ..+.++.++++..+.+...+.
T Consensus 284 V~~~v---~d~f~~~l~~~-~~~l~~Gd~~d~~t~~Gpli~~~~~~~v~~~i~~a~~~G 338 (472)
T COG1012 284 VHESV---YDEFVERLVAR-AASLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEG 338 (472)
T ss_pred Eehhh---HHHHHHHHHHH-HhcCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 33333 33333333322 1111000 11112232 234556777777777766653
No 210
>KOG2456|consensus
Probab=97.25 E-value=0.002 Score=67.38 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=113.6
Q ss_pred HHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcc-------ccccccccCCC--CCCCCceeeEEE
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRK-------IGTFFTDASAQ--SGGTPVEVLAEI 219 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~-------i~t~~a~~~d~--~~~~PlGVi~~I 219 (462)
.+...++++.++|.+|=.+|+-+ +.-+.+-+. +-+.+..+.|. ....|.||+.+|
T Consensus 32 ~L~r~i~e~e~~i~~Al~~DL~k~~~es~~~Ev~~~~~~i~~~l~~L~~wv~~~~v~~~~~t~~dk~~I~~~p~GvVLiI 111 (477)
T KOG2456|consen 32 ALYRMIQENEKEIIEALAADLHKPELESYLNEVGYVLNEIRYALENLPEWVKPEPVKKSFLTFLDKAYIEKEPLGVVLII 111 (477)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhHHhccccccCcccccccCceeEEecCCceEEEE
Confidence 37788999999999999888865 222222222 00111111111 248999999999
Q ss_pred E-eCCCCccc-ccc---------------cccccchHHHHH-hhcCCC---CeEEeec-CHHHHHHHhcCCCCccEEeec
Q psy11677 220 W-KNETLNTT-VPK---------------KHAKTSQCKYFT-KMLPRY---PLHSQVS-TREEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 220 y-Esr~~Pnv-~~~---------------~ea~~sn~~~l~-~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDliIPr 277 (462)
- +.. |-. +.+ +.-+.-|+.++. +-|.++ ++++.|+ .-.++.+||++ ..|.|.=.
T Consensus 112 ~~wNy--P~~L~l~PligAiAAGN~VVlKPSEls~n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL~~--rfD~IfyT 187 (477)
T KOG2456|consen 112 GPWNY--PLNLTLVPLIGAIAAGNAVVLKPSELSPNTAKLLAKLLPQYLDQDLIRVVNGGVPETTELLKQ--RFDHIFYT 187 (477)
T ss_pred ccCCC--cceeehhhhhhhhhcCCEEEechhhcChhHHHHHHHHHHHhcCcceEEEecCCCchHHHHHHh--hccEEEec
Confidence 3 122 522 222 222333434444 888887 9999999 68899999988 48999999
Q ss_pred CChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||+..=+-|+..+. -.||----.|-|.+|||+++|++-|.+-|.=+|--..|=
T Consensus 188 Gsp~VgkIim~aAaKhLTPvtLELGGKsP~~vd~~~d~~ia~~RI~~gk~~N~GQ 242 (477)
T KOG2456|consen 188 GSPRVGKIIMAAAAKHLTPVTLELGGKSPCYVDKNCDLKIAARRIAWGKWMNSGQ 242 (477)
T ss_pred CCchHHHHHHHHHHhcCCcEEEEcCCCCCeeecCCcCHHHHHHHHHHHhhccCCC
Confidence 99988777655432 489999999999999999999999999999888754443
No 211
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=97.18 E-value=0.0014 Score=71.65 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=85.7
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cccc-cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TVPK-KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~~~-~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+ ||+++|-.-- .|- |.+- ..+-.|. ..|++.+.++ +.+++|+. -..+.+.|
T Consensus 166 ~~~P~~GVv~~I~PwN-~P~~~~~~~~a~ALaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~g~~L 243 (533)
T TIGR01236 166 DYRPLEGFVYAISPFN-FTAIAGNLPGAPALMGNTVIWKPSITATLSN-YLTMRILEEAGLPPGVINFVPGDGFAVSDVV 243 (533)
T ss_pred EEecCCCEEEEEeCCc-hHHHHHHHHHHHHHhCCeEEEECCCcCCHHH-HHHHHHHHhcCCCCCcEEEEecCcHHHHHHH
Confidence 47899 9999994211 131 1111 3344555 5566777776 89999983 33455555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--Cc------ceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HI------PVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~i------Pvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.=.||..--+.|.+.+. -. +|.....|+..++|++|||+++|++-++.++...-|=
T Consensus 244 v~~p~v~~V~FTGS~~~G~~i~~~aa~~l~~~~~~~~v~lElGGknp~IV~~dADl~~Aa~~i~~~~f~~~GQ 316 (533)
T TIGR01236 244 LADPRLAGIHFTGSTATFKHLWKWVASNLDRYHNFPRIVGETGGKDFHVVHPSADIDHAVTATIRGAFEYQGQ 316 (533)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHhhccccccCCcEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhhCCC
Confidence 56667999999999887777766431 12 3888889999999999999999999999998875554
No 212
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=96.62 E-value=0.0089 Score=62.81 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHHhCC
Q psy11677 369 GTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIAESS 448 (462)
Q Consensus 369 ~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia~l~ 448 (462)
.|+.|.+..+.++.++|.++|+++++.|+++++++.+++.+|..+..+ .....+++|+.+...+++.+++.++..+...
T Consensus 2 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~-~~~~~~~~~~~~~~~ev~~~~~~~~~~a~~~ 80 (397)
T cd07077 2 SAKNAQRTLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIR-SLIANWIAMMGCSESKLYKNIDTERGITASV 80 (397)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999999988754 4677999999999999999999999998644
No 213
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=96.55 E-value=0.0035 Score=67.99 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c-cccc-cccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V-PKKH-AKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~-~~~e-a~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-.-- .|-. + +-+| +-.|. ..|++.+.++ +.+++|+. .+....|+
T Consensus 139 ~r~P~GVV~~I~PwN-fP~~l~~~~ia~ALaaGN~VVlKPSe~tp~~~-~~l~~~~~~aGlP~gv~~vv~G~~~~~~~l~ 216 (489)
T cd07126 139 YRWPYGPVAIITPFN-FPLEIPALQLMGALFMGNKPLLKVDSKVSVVM-EQFLRLLHLCGMPATDVDLIHSDGPTMNKIL 216 (489)
T ss_pred EEecceEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCCCHHH-HHHHHHHHHhCcCcCcEEEEeCCchhHHHHh
Confidence 478999999994211 1421 1 1133 44555 5566666665 89999984 34466676
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC-CHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA-DIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a-d~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
. +..+|.|-=.||..-=+.|...+ +-++.-...|..+++|.+|| |++.|++.+..++..+-|= .|-+..-+..
T Consensus 217 ~-~~~v~~V~FTGS~~vGr~i~~~~-g~k~~lElgg~~~~IV~~Da~dld~a~~~~~~g~f~naGQ----~C~a~~rv~V 290 (489)
T cd07126 217 L-EANPRMTLFTGSSKVAERLALEL-HGKVKLEDAGFDWKILGPDVSDVDYVAWQCDQDAYACSGQ----KCSAQSILFA 290 (489)
T ss_pred c-CCCCCEEEEECCHHHHHHHHHHh-CCCEEeecCCCCceEECCCcccHHHHHHHHHHHHHhcCCC----cCCCCceEEE
Confidence 5 45699999999999999998887 47887788899999999999 9999999999998875443 5555555555
Q ss_pred ccc
Q psy11677 345 QGE 347 (462)
Q Consensus 345 ~~~ 347 (462)
|+.
T Consensus 291 ~~~ 293 (489)
T cd07126 291 HEN 293 (489)
T ss_pred eCc
Confidence 555
No 214
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=96.38 E-value=0.006 Score=66.11 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH-hcHHHHHHHHHCCCChhhhhhcC---CCHHHHHHHH
Q psy11677 363 GSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLD-ANSKDLSDATKNGVAKPLLSRLS---LTPSKLKSLS 438 (462)
Q Consensus 363 ~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~-AN~~Dl~~a~~~gl~~~l~dRL~---L~~~ri~~m~ 438 (462)
-...+++||.|.+.++.++.++|+++|+++|+.|.+++++|.+ +| ++.|.+..+ +|+. +...++..++
T Consensus 10 v~~av~~A~~A~~~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~-------~E~Gk~~~~-~~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02518 10 VRNLIRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMAN-------EETGFGKWE-DKVIKNVFAATIVYDSI 81 (488)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHhCCChHH-HHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999886 55 667888777 8875 5667777777
Q ss_pred HHHHHH
Q psy11677 439 TGLKQI 444 (462)
Q Consensus 439 ~~l~~i 444 (462)
.+++.+
T Consensus 82 ~~~~~~ 87 (488)
T TIGR02518 82 KDMKTI 87 (488)
T ss_pred hhCccc
Confidence 766544
No 215
>cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.
Probab=95.72 E-value=0.17 Score=53.98 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=84.8
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHhhcCCC-------CeEEee--c-C-HHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY-------PLHSQV--S-T-REE 260 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~-------~~v~~v--~-~-r~~ 260 (462)
.+.|+||++.|...- .|-+... +..-.+. ..|.+.+.++ +.++++ + . .+.
T Consensus 109 ~~~P~Gvv~~I~p~N-~P~l~~~s~~~aLlaGN~~ilKpS~~~p~~~-~~l~~~l~~~~p~~~~~~~~~vv~~~g~~~~~ 186 (422)
T cd07080 109 RAQPRGLVVHIIAGN-VPLLPVWSIVRGLLVKNVNLLKMSSSDPLTA-TALLRSLADVDPNHPLTDSISVVYWPGGDAEL 186 (422)
T ss_pred EEcCCceEEEEccCC-ccccHHHHHHHHHHhcCceEEECCCccchHH-HHHHHHHHhcCCCCcccceEEEEEecCCchHH
Confidence 478999999996433 3542111 4444555 5666444443 556776 4 2 334
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhCC-CcceeeeccceeEEEEccCC----CHHHHHHHHHcccCCCCCC
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-HIPVLGHAEGICHVYVDKDA----DIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~-~iPvi~~~~G~ch~yvd~~a----d~~~a~~i~~nak~~~~~~ 330 (462)
...|++.. |.++=.||..-++.|.+.+. +..+|++|..+..+|++.+| |++++++-+.++++.+-+-
T Consensus 187 ~~~l~~~~---D~i~~~Gs~~~~~~i~~~a~~~~~~Le~Ggk~s~~vi~~~a~~~~dl~~aa~~~a~~~~~~~gQ 258 (422)
T cd07080 187 EERILASA---DAVVAWGGEEAVKAIRSLLPPGCRLIDFGPKYSFAVIDREALESEKLAEVADALAEDICRYDQQ 258 (422)
T ss_pred HHHHHHhC---CEEEEeCCHHHHHHHHHhCCCCCeeeecCCceeEEEecHHhhccccHHHHHHHHHHHHHHHhhh
Confidence 55566554 99999999999999997652 45689999999999999999 9999999999998886655
No 216
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=95.03 E-value=0.066 Score=57.18 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
...+.|+.|....+.++.++|.++|+++++.|++++++|.+++.+|..+. +.++...++.....+++.+++.++++
T Consensus 9 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~----~~e~~~~ev~~~~~~~~~~a~~~~~~ 84 (436)
T cd07135 9 SIHSRLRATFRSGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRP----PFETLLTEVSGVKNDILHMLKNLKKW 84 (436)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999999999999999997544 23455678888889999999999988
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
+...
T Consensus 85 ~~~~ 88 (436)
T cd07135 85 AKDE 88 (436)
T ss_pred hCCc
Confidence 7554
No 217
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=94.99 E-value=0.034 Score=62.63 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=83.7
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cc-cc-cccccchHHHHHhhcCCC-----CeEEeecCHHHHHHH
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TV-PK-KHAKTSQCKYFTKMLPRY-----PLHSQVSTREEISDL 264 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~-~~-~ea~~sn~~~l~~al~~~-----~~v~~v~~r~~~~~l 264 (462)
.+.|+ ||+++|-.-- .|- |+ +- ..+-.|. ..+.+.+.++ +.+++|... ..++
T Consensus 140 ~~~P~~Gvv~~I~pwN-~P~~~~~~~~~~ALaaGN~Vv~KPs~~tp~~~-~~l~~~~~~aG~lP~gv~~~v~g~--~~~~ 215 (663)
T TIGR02278 140 ILTPKGGVAVQINAFN-FPVWGLLEKFAPAFLAGVPTLAKPATPTAYVA-EALVRTMVESGLLPEGSLQLICGS--AGDL 215 (663)
T ss_pred EEEeCCceEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHhCCCCCCcEEEEeCC--hHHH
Confidence 36897 9999994211 141 11 11 3334555 5555665553 789999842 3334
Q ss_pred hcCCCCccEEeecCChhHHHHHHhh----CCCcceeeeccceeEEEEccCCC-----HHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQK----SQHIPVLGHAEGICHVYVDKDAD-----IRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~----s~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i~~nak~~~~~~ 330 (462)
+.....+|.|.=.||..-=+.|.+. .+.+||.-=..|...++|.+||| ++.|++.++.++..+-|=
T Consensus 216 ~~~~~~~~~V~FTGS~~~G~~i~~~aaaa~~~~~~~lELGGk~p~IV~~dAd~~~~dl~~aa~~i~~~~f~~sGQ 290 (663)
T TIGR02278 216 LDHLDHRDVVAFTGSAATADRLRAHPNVLERGIRFNAEADSLNAAILGEDATPDEPEFDLFAQEIVRELTIKAGQ 290 (663)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHhHhHHhcCceEEEEcCCCCeEEEcCCCCccchhHHHHHHHHHHHHHhcCCC
Confidence 4443468999999999988888774 13589999999999999999999 999999999988775554
No 218
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=94.72 E-value=0.047 Score=59.68 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCCC-ceeeEEEEeCCCCcc----------------cccc--cccccchHHHHHhhcCCC-----CeEEeecC-HHHHHH
Q psy11677 209 GGTP-VEVLAEIWKNETLNT----------------TVPK--KHAKTSQCKYFTKMLPRY-----PLHSQVST-REEISD 263 (462)
Q Consensus 209 ~~~P-lGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~~l~~al~~~-----~~v~~v~~-r~~~~~ 263 (462)
++.| +||+++|-.-- .|- |+.. ..+-.+. ..|++.+.++ +.+++|.. -..+.+
T Consensus 140 ~~~P~~GVv~~I~pwN-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~eaG~lP~gv~~~v~g~~~~~~~ 217 (513)
T cd07128 140 ILTPRRGVAVHINAFN-FPVWGMLEKFAPALLAGVPVIVKPATATAYLT-EAVVKDIVESGLLPEGALQLICGSVGDLLD 217 (513)
T ss_pred EEEecccEEEEECCcc-cHHHHHHHHHHHHHHcCCEEEEECCCCCCHHH-HHHHHHHHHhCCCCCCcEEEecCChHHHhc
Confidence 3689 59999984211 131 1111 3333455 5555555553 78999984 322333
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCCC-----HHHHHHHHHcccCCCCCCCCch
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDAD-----IRKAIKIARSGSRVLQGLNPED 334 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i~~nak~~~~~~~~~~ 334 (462)
-| ..+|.|.=.||..--+.|.+++ +.+||..=..|...++|.+||| +++|++-++.++...-|=
T Consensus 218 ~l---~~~d~v~fTGS~~~G~~i~~~a~~a~~~~~~~lElGGknp~IV~~DAd~~~~dld~aa~~iv~~~f~~aGQ---- 290 (513)
T cd07128 218 HL---GEQDVVAFTGSAATAAKLRAHPNIVARSIRFNAEADSLNAAILGPDATPGTPEFDLFVKEVAREMTVKAGQ---- 290 (513)
T ss_pred cc---CCCCEEEEECCHHHHHHHHHHhhhhccCceEEEeccCcCcEEECCCCCcchhhHHHHHHHHHHHHHHhcCC----
Confidence 22 3589999999999988888862 3589998899999999999999 999999999988765443
Q ss_pred hHHHHHHhhhcccc
Q psy11677 335 RAKAIYNLADQGEM 348 (462)
Q Consensus 335 ~~~~~~~~~~~~~~ 348 (462)
.|.+..-+..|..|
T Consensus 291 ~C~a~~rv~V~~~i 304 (513)
T cd07128 291 KCTAIRRAFVPEAR 304 (513)
T ss_pred cccCCceEEEehHH
Confidence 55555555555554
No 219
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=94.26 E-value=0.061 Score=57.51 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|+.+. +.++...++....+.++..++.++++
T Consensus 2 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~----~~~a~~~ev~~~~~~~~~~~~~~~~~ 77 (443)
T cd07132 2 EAVRRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKP----KFEAVLSEILLVKNEIKYAISNLPEW 77 (443)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999997543 33455667777778888888888887
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
+.
T Consensus 78 ~~ 79 (443)
T cd07132 78 MK 79 (443)
T ss_pred hC
Confidence 63
No 220
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=93.80 E-value=0.088 Score=57.65 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=67.5
Q ss_pred CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCCC-----HHHHHHH
Q psy11677 250 PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDAD-----IRKAIKI 319 (462)
Q Consensus 250 ~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i 319 (462)
+.+++|.. .+.+.+.| ..+|.|.=.||..--+.|.+.+ +.+||.-=-.|...++|.+||| +++|++-
T Consensus 207 gv~~~v~g~~~~~~~~l---~~v~~v~fTGS~~~G~~v~~~aa~~~~~~~~~lElGGknp~IV~~dAd~~~~~~~~aa~~ 283 (521)
T PRK11903 207 GALSVVCGSSAGLLDHL---QPFDVVSFTGSAETAAVLRSHPAVVQRSVRVNVEADSLNSALLGPDAAPGSEAFDLFVKE 283 (521)
T ss_pred CceEEeeCCchHHHhcc---cCCCEEEEECCHHHHHHHHhhhhhhccCceeEeeccccCceEEccCCcccchhHHHHHHH
Confidence 78999983 44444433 5699999999999888887742 2579888888999999999999 5999999
Q ss_pred HHcccCCCCCCCCchhHHHHHHhhhccc
Q psy11677 320 ARSGSRVLQGLNPEDRAKAIYNLADQGE 347 (462)
Q Consensus 320 ~~nak~~~~~~~~~~~~~~~~~~~~~~~ 347 (462)
++.++..+-|= .|-+...+..+..
T Consensus 284 i~~~~f~~sGQ----~C~a~~rv~V~~~ 307 (521)
T PRK11903 284 VVREMTVKSGQ----KCTAIRRIFVPEA 307 (521)
T ss_pred HHHHHHhccCC----CccCCeEEEEehh
Confidence 99888875554 3444444444433
No 221
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=91.69 E-value=0.75 Score=49.40 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhh-cCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSR-LSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dR-L~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|....+.++.++|.++|+++++.|+++++++.++- +++.|.+.....+ +....++++.++..++.
T Consensus 4 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~------~~e~Gkp~~~~~~ev~~~~~~l~~~a~~~~~ 76 (454)
T cd07129 4 AAAAAAAAFESYRALSPARRAAFLEAIADEIEALGDELVARA------HAETGLPEARLQGELGRTTGQLRLFADLVRE 76 (454)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999988662 3445655544432 55566677777766654
No 222
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=91.38 E-value=0.4 Score=52.19 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.||++.+....++.++|.+.|+++++.|++++++|.+++.+|+-+.. .++...-+...-+.++.+++.+++.
T Consensus 11 ~av~~a~~a~~~~~~~~~~~R~~~L~~l~~~l~~~~~~i~~a~~~d~Gk~~----~ea~~~Ev~~~~~~i~~~~~~~~~~ 86 (493)
T PTZ00381 11 PIVKKLKESFLTGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHP----FETKMTEVLLTVAEIEHLLKHLDEY 86 (493)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999985432 2444433666777888888888877
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
..
T Consensus 87 ~~ 88 (493)
T PTZ00381 87 LK 88 (493)
T ss_pred hC
Confidence 54
No 223
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=91.33 E-value=0.32 Score=51.95 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|+-+. +.+++.+.+....+.++..+..+++
T Consensus 4 a~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~----~~~a~~~ev~~~~~~~~~~~~~~~~ 77 (432)
T cd07137 4 LVRELRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDIFAALRQDLGKP----SAESFRDEVSVLVSSCKLAIKELKK 77 (432)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999986443 2344455555555566655555444
No 224
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=91.10 E-value=0.66 Score=50.09 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCC--HHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRV-LQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT--PSKLKSLSTGL 441 (462)
Q Consensus 365 ~~~~~Ar~As~~-L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~--~~ri~~m~~~l 441 (462)
..++.|++|... .++++.++|.++|+++++.|++++++|..++..|. |.+.....++.++ -++++..+..+
T Consensus 40 ~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~------Gk~~~~~~~~ev~~~~~~~~~~~~~~ 113 (481)
T TIGR03216 40 AAVAAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADT------GKPRSLASHLDIPRGAANFRVFADVV 113 (481)
T ss_pred HHHHHHHHHhHhhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc------CCcHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456678888886 89999999999999999999999999999988876 4444444333322 34555555555
Q ss_pred HHH
Q psy11677 442 KQI 444 (462)
Q Consensus 442 ~~i 444 (462)
+++
T Consensus 114 ~~~ 116 (481)
T TIGR03216 114 KNA 116 (481)
T ss_pred HHh
Confidence 543
No 225
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=91.05 E-value=0.39 Score=54.23 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=88.3
Q ss_pred CCCc-eeeEEEEeCCCCcc----------------c-ccc-cccccchHHHHHhhcCCC-----CeEEeecCHHHHHHHh
Q psy11677 210 GTPV-EVLAEIWKNETLNT----------------T-VPK-KHAKTSQCKYFTKMLPRY-----PLHSQVSTREEISDLL 265 (462)
Q Consensus 210 ~~Pl-GVi~~IyEsr~~Pn----------------v-~~~-~ea~~sn~~~l~~al~~~-----~~v~~v~~r~~~~~ll 265 (462)
..|+ ||+++|-.-- .|- | .+- ..+-.|. ..|++.+.++ +.+++|... ..+++
T Consensus 145 ~~p~~GVv~~I~PwN-fP~~~~~~~i~pALaaGN~VV~KPse~tp~~a-~~l~~~~~eaG~~P~gv~~vv~g~--~~~~~ 220 (675)
T PRK11563 145 LTPLEGVAVHINAFN-FPVWGMLEKLAPAFLAGVPAIVKPATATAYLT-EAVVRLIVESGLLPEGALQLICGS--AGDLL 220 (675)
T ss_pred EeecCceEEEECCCc-hHHHHHHHHHHHHHHcCCeEEEECCCCCcHHH-HHHHHHHHHcCCCCCCcEEEeeCC--HHHHh
Confidence 6786 9999984111 132 1 111 3334555 5556555553 789999842 12344
Q ss_pred cCCCCccEEeecCChhHHHHHHhh----CCCcceeeeccceeEEEEccCCC-----HHHHHHHHHcccCCCCCCCCchhH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQK----SQHIPVLGHAEGICHVYVDKDAD-----IRKAIKIARSGSRVLQGLNPEDRA 336 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~----s~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i~~nak~~~~~~~~~~~~ 336 (462)
.....+|.|-=.||..-=+.|.+. .+.+||.-=-.|+..++|.+||| +++|++-++.++..+-|= .|
T Consensus 221 ~~~~~i~~v~FTGS~~~G~~i~~~~~a~~~~~~~~lELGGknp~IV~~DAd~~~~dld~aa~~i~~~~f~~aGQ----~C 296 (675)
T PRK11563 221 DHLDGQDVVTFTGSAATAQKLRAHPNVVANSVPFTAEADSLNAAILGPDATPGTPEFDLFVKEVVREMTVKAGQ----KC 296 (675)
T ss_pred hcCCCCCEEEEECcHHHHHHHHhhhhhhhCCceEEEecCCcCceEECCCCCcCchhHHHHHHHHHHHHHHhCCC----cc
Confidence 433358999999999988887763 22588888888999999999995 999999999998875444 56
Q ss_pred HHHHHhhhcccc
Q psy11677 337 KAIYNLADQGEM 348 (462)
Q Consensus 337 ~~~~~~~~~~~~ 348 (462)
.+...+..|..|
T Consensus 297 ~a~~rv~V~~~i 308 (675)
T PRK11563 297 TAIRRAIVPRAL 308 (675)
T ss_pred ccceeEEeeHHH
Confidence 666666555554
No 226
>KOG2436|consensus
Probab=90.59 E-value=0.16 Score=54.85 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=70.7
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccc-cCCCCCCCCcccccccHHhHHhhhhc-CCCCCCCCcchHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIY-TKAPWEEGAKMIWTYTSEMRDTVQFG-QKSKVGTGGMDSKVNSA 103 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY-~~dP~~p~AklI~~I~~~e~~~l~~~-~~s~~gtGGM~~Kl~AA 103 (462)
++++--.+.|++|..+|..|+++++++++|+ |.. .. +++.++.+...+...+... +....++++|..++...
T Consensus 249 SGqvlnvNa~~~a~elA~~L~~~kli~l~d~-g~~l~e-----~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~ 322 (520)
T KOG2436|consen 249 SGQVLNVNADEVAGELALALGPDKLILLMDK-GRILKE-----NGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDG 322 (520)
T ss_pred ccceEEeeHHHHhhHHHhccCcceeEEeccc-cccccc-----CcccccccccchhHhhhhhhhhhcccccccchhhhhh
Confidence 4556668999999999999999999999998 543 43 4566666655444333211 22345677776665554
Q ss_pred HHHHHcCCeEEEEeCCChhH-HHHHHcCCccccccccC
Q psy11677 104 TWALDRGVSVVICNGMQKEA-IKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~ 140 (462)
..+..-+.+.+........+ +.+.+.+.+.||+|.+.
T Consensus 323 ~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~g 360 (520)
T KOG2436|consen 323 IDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGG 360 (520)
T ss_pred eeeccCcCCCCCcceeecccccceeeccCCCCccccCc
Confidence 44322222224444444444 67788888899999875
No 227
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=90.34 E-value=0.45 Score=50.77 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
++++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-
T Consensus 2 ~~~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~G 49 (434)
T cd07133 2 ALLERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAISADFG 49 (434)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467889999999999999999999999999999999999999999875
No 228
>PLN02203 aldehyde dehydrogenase
Probab=89.82 E-value=0.53 Score=51.14 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..+..|+.|.+.-+.++.++|.++|+++++.|++++++|.+++.+|+-+. +.+++...+...-+.++..++.++++
T Consensus 10 ~av~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~----~~ea~~~Ev~~~~~~~~~~~~~~~~~ 85 (484)
T PLN02203 10 GSVAELRETYESGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKH----RVEAYRDEVGVLTKSANLALSNLKKW 85 (484)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999987432 23445556666667777777777776
Q ss_pred H
Q psy11677 445 A 445 (462)
Q Consensus 445 a 445 (462)
+
T Consensus 86 ~ 86 (484)
T PLN02203 86 M 86 (484)
T ss_pred h
Confidence 5
No 229
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=89.79 E-value=0.85 Score=49.36 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR-VLQ-GLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~-~L~-~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|.+ .-. .++.++|.++|+++++.|++++++|.+++.+|. |.+.....|+ .++..++.++.
T Consensus 49 av~~a~~a~~~~W~~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~------Gk~~~~~~~~-----ev~~~~~~~~~ 117 (481)
T cd07143 49 AVEVAHAAFETDWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDN------GKTFGTAKRV-----DVQASADTFRY 117 (481)
T ss_pred HHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc------CCChHHHHHH-----HHHHHHHHHHH
Confidence 4456777766 466 899999999999999999999999999988873 3333222222 25555556665
Q ss_pred HHhCC
Q psy11677 444 IAESS 448 (462)
Q Consensus 444 ia~l~ 448 (462)
.+.+.
T Consensus 118 ~a~~a 122 (481)
T cd07143 118 YGGWA 122 (481)
T ss_pred HHHHH
Confidence 55544
No 230
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=89.50 E-value=0.81 Score=48.95 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++++.|.+++++|.+++.+|.
T Consensus 23 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 69 (457)
T cd07090 23 LAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEIARLETIDN 69 (457)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 46677899999999999999999999999999999999999998885
No 231
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=89.39 E-value=0.87 Score=48.62 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|+.|....+.++.++|.++|+++++.|.+++++|..++.+|.
T Consensus 23 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 69 (455)
T cd07093 23 AAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADELALLESLDT 69 (455)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667899999999999999999999999999999999998888875
No 232
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=89.26 E-value=1.1 Score=48.39 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|..+
T Consensus 39 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 80 (478)
T cd07086 39 AAVAAAREAFKEWRKVPAPRRGEIVRQIGEALRKKKEALGRL 80 (478)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456678999999999999999999999999999999998766
No 233
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=89.13 E-value=1.2 Score=47.71 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhc--CCCHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRL--SLTPSKLKSLSTGLK 442 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL--~L~~~ri~~m~~~l~ 442 (462)
..++.|++|.+..+.++.++|.++|.++|+.|.+++++|.+++.+| .|.+...-+++ ...-+.++..+..++
T Consensus 40 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e------~Gk~~~~~~~~ev~~~~~~~~~~~~~~~ 113 (466)
T cd07138 40 RAVAAARRAFPAWSATSVEERAALLERIAEAYEARADELAQAITLE------MGAPITLARAAQVGLGIGHLRAAADALK 113 (466)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556889999999999999999999999999999999998877554 44444333332 234456666766666
Q ss_pred HHH
Q psy11677 443 QIA 445 (462)
Q Consensus 443 ~ia 445 (462)
++.
T Consensus 114 ~~~ 116 (466)
T cd07138 114 DFE 116 (466)
T ss_pred hcc
Confidence 553
No 234
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=88.43 E-value=0.95 Score=48.95 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~ 88 (488)
T TIGR02299 42 RAAKAAKEAFKRWAELKAAERKRYLHKIADLIEQHADEIAVLECLDC 88 (488)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 35668899999999999999999999999999999999999888874
No 235
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=88.25 E-value=1.1 Score=47.87 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
...++.|++|....+.++.++|.++|+++++.|++++++|.++..+|.-
T Consensus 16 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 64 (443)
T cd07152 16 DRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVRESG 64 (443)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 3456678999999999999999999999999999999999988888754
No 236
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=87.93 E-value=0.99 Score=48.30 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
...++.|+.|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-+
T Consensus 22 ~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 71 (457)
T cd07108 22 DRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEELARLLALETGN 71 (457)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999999999999999999988643
No 237
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=87.66 E-value=1.2 Score=47.74 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..++.|++|.+..+.++.++|.++|+++++.|.++++++..++..|.-+ .+.++....+....+.++.++...++
T Consensus 22 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk----~~~~a~~~e~~~~~~~~~~~~~~~~~ 96 (465)
T cd07098 22 EAIAAARAAQREWAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGK----TMVDASLGEILVTCEKIRWTLKHGEK 96 (465)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999998887766432 23344444555566677777666555
No 238
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=87.50 E-value=1.2 Score=47.76 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPS 432 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ 432 (462)
..++.|++|.+..+.++.++|.++|+++|+.|++++++|.+...++.-+ ...++.++++.+..+
T Consensus 8 ~av~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk----~~~~~~~~~~~~~~~ 71 (429)
T cd07121 8 DAVAAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAEMAVEETGM----GRVEDKIAKNHLAAE 71 (429)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999876544211 222355666655433
No 239
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=87.15 E-value=1.2 Score=47.54 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|.+++.+|.-
T Consensus 22 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~G 69 (454)
T cd07101 22 AAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETG 69 (454)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 345678999999999999999999999999999999999999988864
No 240
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=86.47 E-value=1.4 Score=47.62 Aligned_cols=48 Identities=13% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|.+..+.++.++|.++|+++|+.|++++++|..++.+|.-
T Consensus 48 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 95 (488)
T PRK13252 48 AAVASAKQGQKIWAAMTAMERSRILRRAVDILRERNDELAALETLDTG 95 (488)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 345578999999999999999999999999999999999988877653
No 241
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=86.47 E-value=2.7 Score=44.89 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|.++= .++.|.+... ....+...++.++..
T Consensus 23 ~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~------~~e~Gk~~~~------a~~ev~~~~~~l~~~ 90 (446)
T cd07106 23 QAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEELARLL------TLEQGKPLAE------AQFEVGGAVAWLRYT 90 (446)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcCCCHHH------HHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999987662 3445554421 113566777777777
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
+.+.
T Consensus 91 ~~~~ 94 (446)
T cd07106 91 ASLD 94 (446)
T ss_pred Hhhh
Confidence 6665
No 242
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=86.29 E-value=1.5 Score=47.81 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
...++.|++|.+..+.++.++|.++|.++++.|++++++|.+++.+|+-+
T Consensus 56 ~~av~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~~~~e~Gk 105 (496)
T PLN00412 56 NKAMESAKAAQKAWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAK 105 (496)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 35667789999999999999999999999999999999999999999754
No 243
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=86.15 E-value=3 Score=44.50 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChh-hhhhcCCCHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKP-LLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~-l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..++.|++|.+..+.++.++|.++|+.+++.|+++++++.++- +.+.|.+.. ....+...-..++.++..+++
T Consensus 22 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~------~~e~Gk~~~~~~~ev~~~~~~~~~~~~~~~~ 95 (452)
T cd07102 22 AALERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEIAEEL------TWQMGRPIAQAGGEIRGMLERARYMISIAEE 95 (452)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999887552 344455443 123444455677777777766
Q ss_pred H
Q psy11677 444 I 444 (462)
Q Consensus 444 i 444 (462)
.
T Consensus 96 ~ 96 (452)
T cd07102 96 A 96 (452)
T ss_pred h
Confidence 5
No 244
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=85.99 E-value=1.7 Score=46.18 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+..+.++.++|.++|+++++.|+++.+++.+++..|.
T Consensus 4 ~ai~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 50 (432)
T cd07105 4 QAVEAAAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIEAMMEET 50 (432)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999888876
No 245
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=85.90 E-value=1.9 Score=46.63 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..+..|++|....+.++.++|.++|+++++.|++++++|..+...|.-+ -+.++....+...-++++..+..++.
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk----~~~~a~~~ev~~~~~~~~~~a~~~~~ 116 (479)
T cd07116 42 LALDAAHAAKEAWGKTSVAERANILNKIADRMEANLEMLAVAETWDNGK----PVRETLAADIPLAIDHFRYFAGCIRA 116 (479)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456788899999999999999999999999999999998777765311 12233333444445555555555544
No 246
>KOG2450|consensus
Probab=85.81 E-value=2.9 Score=45.46 Aligned_cols=181 Identities=17% Similarity=0.083 Sum_probs=116.6
Q ss_pred CCCCceeeEEEE-eCCCCc---------------ccccccccccchHHHHH--hhcCCC----CeEEeec-C-HHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLN---------------TTVPKKHAKTSQCKYFT--KMLPRY----PLHSQVS-T-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~P---------------nv~~~~ea~~sn~~~l~--~al~~~----~~v~~v~-~-r~~~~~l 264 (462)
.+.|+||+|.|- .+. | |+.+-|-+..|-..+++ +.++++ +.+.+|+ + ++.=..|
T Consensus 155 ~~eP~GV~G~I~pWN~--Pllm~awKlaPALa~GNtvV~Kpae~tplsal~~~~l~~eaG~P~GVvNii~G~G~~aG~al 232 (501)
T KOG2450|consen 155 RREPIGVCGQIIPWNF--PLLMQAWKLAPALAAGNTVVLKPAEQTPLTALYLASLCKEAGFPPGVVNIVPGSGTTAGAAL 232 (501)
T ss_pred cCCcceeeeEeccCch--HHHHHHHhhhhHHhhCcEEEecCCCCCCchHHHHHHHhHHhcCCcceEEEccCCCchHHHHH
Confidence 499999999993 222 4 23333666555545565 777777 9999999 3 4444444
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
. .+-.||-|-=.||-.--+.|++.+. ..||=---.|=-...|-.|||+++|++-+..+--.+++- +|-|--.
T Consensus 233 ~-sH~dv~kiaFTGSt~~G~~I~~aaa~~n~K~vtLElGGKsp~Ivf~Dadld~av~~~~~~iF~nqGq----~C~a~sR 307 (501)
T KOG2450|consen 233 A-SHPDVDKVAFTGSTPVGKEIMEAAAESNLKPVTLELGGKSPIIVFDDADLDLAVENAAFGIFFNQGQ----CCTAGSR 307 (501)
T ss_pred h-hCCCCceEEecCCCcchhHHhhhhhhcCCceeccccCCCCcceEecccchHHHHHHHHHHhhccccc----ccccCce
Confidence 4 4456999999999988888887652 378877778888889999999999999988886665544 5555555
Q ss_pred hhhcccccccChhhHHHHHHhHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q psy11677 342 LADQGEMDVSGLPCLLLFIRLGSL---FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISK 399 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~ 399 (462)
+..|+.|.-. .+.++.+.... +..-.....++=+..+.++.++++.-+.....+-
T Consensus 308 ~~Vqe~iyde---fv~~~v~~a~~~~kvGdP~~~~~~qG~~i~~~q~ekI~~yi~~~k~eG 365 (501)
T KOG2450|consen 308 VFVQESIYDE---FVEKFVAAAKKKLKVGDPFDEGTEQGPQISKTQYEKILGYIESGKKEG 365 (501)
T ss_pred eEEechHHHH---HHHHHHHHHhcccccCCCCCcccccccccCHHHHHHHHHHHHHHHhcC
Confidence 6666655332 22222221100 0000112233334677788888887777666554
No 247
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=85.30 E-value=1.3 Score=46.96 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
+.++.|++|...-+.++.++|.++|+++++.|++++++|.++...|.-+. +..+....+...-..++.+++.++..
T Consensus 2 ~~v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~----~~~~~~~Ev~~~~~~~~~~~~~~~~~ 77 (426)
T cd07087 2 ELVARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYADLGKP----PAEAYLTEIAVVLGEIDHALKHLKKW 77 (426)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999998887764322 11233334455556666666666554
No 248
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=85.10 E-value=1.9 Score=46.33 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++|+.|.+++++|.+++.+|.
T Consensus 39 ~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 85 (467)
T TIGR01804 39 RAIAAARRAQGEWASMTPEERGRILRRIAELIRERNEELAKLETLDT 85 (467)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45567899999999999999999999999999999999987776664
No 249
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=84.88 E-value=2.2 Score=46.16 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|..+..+|.-+ .+.++....+...-++++..+..++.
T Consensus 43 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk----~~~~a~~~ev~~~~~~~~~~a~~~~~ 116 (480)
T cd07559 43 AVDAAHEAFKTWGKTSVAERANILNKIADRIEENLELLAVAETLDNGK----PIRETLAADIPLAIDHFRYFAGVIRA 116 (480)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999999999998877766321 12233333344444555555555444
No 250
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=84.77 E-value=1.7 Score=46.37 Aligned_cols=48 Identities=10% Similarity=0.302 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
++..|++|....+.++.++|.++|.++++.|++++++|.+.+..|..+
T Consensus 3 ~~~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk 50 (433)
T cd07134 3 VFAAQQAHALALRASTAAERIAKLKRLKKAILARREEIIAALAADFRK 50 (433)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567799999999999999999999999999999999999999988633
No 251
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=84.56 E-value=1.9 Score=47.27 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|.+..+.++.++|.++|+++++.|.++++++.+++.+|.-
T Consensus 58 ~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~G 105 (524)
T PRK09407 58 AAFARARAAQRAWAATPVRERAAVLLRFHDLVLENREELLDLVQLETG 105 (524)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 455678999999999999999999999999999999999999988874
No 252
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=83.93 E-value=2.2 Score=46.59 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|....+.++.++|.++|+++++.|.+++++|..++.+|.
T Consensus 74 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 119 (518)
T cd07125 74 ALAIAAAAFAGWSATPVEERAEILEKAADLLEANRGELIALAAAEA 119 (518)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999999999999984
No 253
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=83.50 E-value=3.3 Score=44.56 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.||+|....+.++.++|.++|+++++.|.+++++|..+
T Consensus 41 ~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~ela~~ 82 (478)
T cd07131 41 AAVEAAREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELARL 82 (478)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999765
No 254
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=83.50 E-value=2.4 Score=45.51 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|..+..+|.
T Consensus 36 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 82 (465)
T cd07151 36 EAYRAAAAAQKEWAATLPQERAEILEKAAQILEERRDEIVEWLIRES 82 (465)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 44567899999999999999999999999999999999998876653
No 255
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=83.41 E-value=2.4 Score=45.19 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++++.|.++++++.+++.+|.
T Consensus 22 ~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 68 (453)
T cd07099 22 AAVARARAAQRAWAALGVEGRAQRLLRWKRALADHADELAELLHAET 68 (453)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567888889999999999999999999999999999998888875
No 256
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=83.33 E-value=3.2 Score=44.42 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|+.|....+.++.++|.++|+.+++.|++++++|..++.+|.
T Consensus 23 ~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~ 69 (453)
T cd07115 23 AAVAAARAAFEAWSAMDPAERGRILWRLAELILANADELARLESLDT 69 (453)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999998888873
No 257
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=83.31 E-value=2.5 Score=45.02 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
...++.|++|....+.++.++|.++|+++++.|.+++++|.++..+|.
T Consensus 22 ~~av~~a~~a~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~ 69 (450)
T cd07092 22 DAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEELAALESRNT 69 (450)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 346678899999999999999999999999999999999998888773
No 258
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=82.79 E-value=2.7 Score=44.97 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|+++++.|.++++++.+++.+|.
T Consensus 23 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 69 (456)
T cd07110 23 AAVRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREELAELEARDN 69 (456)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999998888774
No 259
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=82.55 E-value=3.6 Score=44.37 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|.+..+.++.++|.++|.++++.|+++++++..+
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 83 (478)
T cd07085 42 AAVAAAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARL 83 (478)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999888765
No 260
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=82.23 E-value=2.8 Score=44.83 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQ-GLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~-~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+... .++.++|.++|.++++.|.+++++|..++.+|.
T Consensus 23 ~av~~a~~A~~~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 70 (454)
T cd07109 23 RAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHADELARLESLDT 70 (454)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 45567888888766 999999999999999999999999999988884
No 261
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=81.92 E-value=2.9 Score=45.20 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
...++.|++|....+.++.++|.++|+++++.|.+++++|..+-..|
T Consensus 38 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 84 (484)
T TIGR03240 38 EAAVAAARAAFPAWARLSLEERIAVVQRFAALLEERKEALARVIARE 84 (484)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999998764433
No 262
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=81.81 E-value=3.5 Score=44.15 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+.++.++.++|.++|+.+++.|+++++++.+....|.
T Consensus 33 ~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~ 79 (462)
T PF00171_consen 33 RAVEAARAAFKEWSKLPAAERARILERFADLLEERRDELAELIALET 79 (462)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccccccccccccc
Confidence 34567899999999999999999999999999999999998888775
No 263
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=81.40 E-value=3.3 Score=44.79 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.++-.+|
T Consensus 40 ~av~~A~~A~~~w~~~~~~~R~~~L~~la~~l~~~~~ela~~~~~E 85 (465)
T PRK15398 40 DAVAAAKVAQQRYQQKSLAMRQRIIDAIREALLPHAEELAELAVEE 85 (465)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999999999999885443
No 264
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=81.31 E-value=3.3 Score=44.12 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
...++.|++|....+.++.++|.++|+++++.|+++++++.++...|.-+- +.++..+ +....+.++.++...++
T Consensus 24 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~~a~~e-v~~~~~~l~~~~~~~~~ 98 (451)
T cd07150 24 ERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGST----YGKAWFE-TTFTPELLRAAAGECRR 98 (451)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC----HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999999999988877664221 1122222 33344566666666665
Q ss_pred HH
Q psy11677 444 IA 445 (462)
Q Consensus 444 ia 445 (462)
+.
T Consensus 99 ~~ 100 (451)
T cd07150 99 VR 100 (451)
T ss_pred hc
Confidence 53
No 265
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=80.49 E-value=3.7 Score=43.37 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|+.|....+.++.++|.++|+++++.|.++++++.++..+|..
T Consensus 4 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 51 (431)
T cd07104 4 RAYAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWLIRESG 51 (431)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 356778999999999999999999999999999999999988887753
No 266
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=80.42 E-value=3.4 Score=44.46 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGL-NPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~l-s~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
...++.|++|.+..... +.++|.++|+++++.|.++++++.++..+|.-+..... ..-++| .-+.++.++..++
T Consensus 41 ~~av~~A~~A~~~w~~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a--~~ev~~---~~~~l~~~~~~~~ 115 (473)
T cd07082 41 LEAAETAYDAGRGWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDA--LKEVDR---TIDYIRDTIEELK 115 (473)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHH---HHHHHHHHHHHHH
Confidence 34556788888888878 99999999999999999999999999988864332110 011222 4456666666666
Q ss_pred HH
Q psy11677 443 QI 444 (462)
Q Consensus 443 ~i 444 (462)
.+
T Consensus 116 ~~ 117 (473)
T cd07082 116 RL 117 (473)
T ss_pred Hh
Confidence 55
No 267
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=80.41 E-value=3.8 Score=43.19 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.++.|++|....+.++.++|.++|..+++.|.+++++|.+++.+|.-
T Consensus 3 av~~a~~a~~~w~~~~~~~R~~~l~~~~~~l~~~~~~l~~~~~~etG 49 (432)
T cd07078 3 AVAAARAAFKAWAALPPAERAAILRKLADLLEERREELAALETLETG 49 (432)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999888753
No 268
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=79.11 E-value=4 Score=43.69 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=48.8
Q ss_pred HHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 365 ~~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
..++.|++|.. ..+.++.++|.++|+.+++.|.+++++|.++- .++.|.+... ....++.+++.++
T Consensus 23 ~av~~a~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~------~~e~Gk~~~~------~~~ev~~~~~~~~ 90 (457)
T cd07114 23 RAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANAEELAELE------TRDNGKLIRE------TRAQVRYLAEWYR 90 (457)
T ss_pred HHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcCCCHHH------HHHHHHHHHHHHH
Confidence 45566777775 48899999999999999999999999888663 3445544221 2234555666666
Q ss_pred HHHhC
Q psy11677 443 QIAES 447 (462)
Q Consensus 443 ~ia~l 447 (462)
..+.+
T Consensus 91 ~~a~~ 95 (457)
T cd07114 91 YYAGL 95 (457)
T ss_pred HHHHH
Confidence 55443
No 269
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=77.86 E-value=2.7 Score=39.33 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=39.1
Q ss_pred EEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHc
Q psy11677 51 ILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVA 129 (462)
Q Consensus 51 IiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~ 129 (462)
++.+||||++|+ ++++-.-.-+++..+ ....|+- .+...++|+++-|+.|++...+.+-..
T Consensus 10 Lli~DVDGvLTD------G~ly~~~~Gee~KaF-------nv~DG~G-----ik~l~~~Gi~vAIITGr~s~ive~Ra~ 70 (170)
T COG1778 10 LLILDVDGVLTD------GKLYYDENGEEIKAF-------NVRDGHG-----IKLLLKSGIKVAIITGRDSPIVEKRAK 70 (170)
T ss_pred EEEEeccceeec------CeEEEcCCCceeeee-------eccCcHH-----HHHHHHcCCeEEEEeCCCCHHHHHHHH
Confidence 455899999985 555543333333332 2345543 335577899999999998877665544
No 270
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=77.14 E-value=5 Score=43.36 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRV-LQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~-L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|... -+.++.++|.++|+++++.|.+++++|.+++.+|
T Consensus 49 ~ai~~A~~A~~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e 95 (484)
T cd07144 49 KAVKAARKAFESWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALD 95 (484)
T ss_pred HHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456678888875 5699999999999999999999999999888877
No 271
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=76.54 E-value=5.5 Score=43.02 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLL 404 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il 404 (462)
..++.|++|....+.++.++|.++|+++++.|++++++|.
T Consensus 38 ~av~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la 77 (474)
T cd07130 38 STIKAAQEAFKEWRDVPAPKRGEIVRQIGDALRKKKEALG 77 (474)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999984
No 272
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=75.91 E-value=6 Score=42.38 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|+++++.|++++++|..+...|.
T Consensus 23 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 69 (456)
T cd07107 23 RAVAAARAAFPEWRATTPLERARMLRELATRLREHAEELALIDALDC 69 (456)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 45567899999999999999999999999999999999987776654
No 273
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=75.70 E-value=7.3 Score=41.62 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
...++.|++|....+.++.++|.++|.++++.|.++++++.++-.+|
T Consensus 24 ~~av~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e 70 (453)
T cd07094 24 EEALATARAGAENRRALPPHERMAILERAADLLKKRAEEFAKIIACE 70 (453)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999988765554
No 274
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=75.62 E-value=6.1 Score=42.09 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+..+.++.++|.++|..+++.|.++++++.++-..|.
T Consensus 23 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~ 69 (451)
T cd07103 23 AAIDAAAAAFKTWRKTTARERAAILRRWADLIRERAEDLARLLTLEQ 69 (451)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46677899999999999999999999999999999999887665553
No 275
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=75.46 E-value=4.1 Score=43.92 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQ--GLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~--~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+..+ .++.++|.++|.++++.|.+++++|.+++.+|.
T Consensus 45 ~av~~A~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 93 (476)
T cd07091 45 AAVKAARAAFETGWWRKMDPRERGRLLNKLADLIERDRDELAALESLDN 93 (476)
T ss_pred HHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34667888888866 999999999999999999999999998887763
No 276
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=75.27 E-value=5.3 Score=42.72 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLL 404 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il 404 (462)
...++.|++|....+.++.++|.++|+++++.|+++++++.
T Consensus 22 ~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la 62 (448)
T TIGR01780 22 EAAIRAAYEAFKTWKNTTAKERSSLLRKWYNLMMENKDDLA 62 (448)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567889999999999999999999999999999999884
No 277
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=74.68 E-value=6.8 Score=41.82 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLL 404 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il 404 (462)
..++.|+.|.+..+.++.++|.++|+++++.|.++++++.
T Consensus 25 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la 64 (452)
T cd07147 25 EAIAAAVKAFRPMRALPAHRRAAILLHCVARLEERFEELA 64 (452)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3466789999999999999999999999999999998884
No 278
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=73.41 E-value=7.7 Score=41.73 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLL 404 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il 404 (462)
..+..|+.|....+..+.++|.++|+++|+.|++++++|-
T Consensus 3 ~av~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela 42 (436)
T cd07122 3 ELVERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELA 42 (436)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998884
No 279
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=72.76 E-value=6.9 Score=42.27 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|....+.++.++|.++|..+++.|.+++++|..+
T Consensus 42 ~ai~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 83 (477)
T TIGR01722 42 AAVASARETFLTWGQTSLAQRTSVLLRYQALLKEHRDEIAEL 83 (477)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999998866
No 280
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=72.38 E-value=8.3 Score=41.36 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|....+.++.++|.++|+++++.|++++++|..+
T Consensus 39 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 80 (468)
T cd07088 39 RAVDAAEAAQKAWERLPAIERAAYLRKLADLIRENADELAKL 80 (468)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456678999999999999999999999999999999988763
No 281
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=71.76 E-value=5.5 Score=42.97 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 366 FISGTRSGSRV--LQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 366 ~~~~Ar~As~~--L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.++.|++|.+. ...++.++|.++|+++++.|.+++++|.++..+|
T Consensus 46 av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e 92 (476)
T cd07142 46 AVKAARKAFDEGPWPRMTGYERSRILLRFADLLEKHADELAALETWD 92 (476)
T ss_pred HHHHHHHhcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 44567777753 8889999999999999999999999999988887
No 282
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=71.31 E-value=14 Score=39.74 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 365 LFISGTRSGSRV--LQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 365 ~~~~~Ar~As~~--L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
..++.|++|.+. .+.++.++|.++|+++++.|.+++++|..+...
T Consensus 40 ~av~~a~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 86 (471)
T cd07139 40 AAVAAARRAFDNGPWPRLSPAERAAVLRRLADALEARADELARLWTA 86 (471)
T ss_pred HHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345567777764 678999999999999999999999988866433
No 283
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=71.05 E-value=9.4 Score=41.07 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.++.|++|.+..+.++.++|.++|+++|+.|+++++++-..-.+|
T Consensus 4 Ai~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E 48 (439)
T cd07081 4 AVAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSE 48 (439)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999886544443
No 284
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=70.79 E-value=9.7 Score=40.54 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANS 408 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~ 408 (462)
..++.|++|....+.++.++|.++|.++++.|.++++++.++=.
T Consensus 25 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~ 68 (453)
T cd07149 25 KAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERREEFARTIA 68 (453)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45567899999999999999999999999999999988874433
No 285
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=70.21 E-value=6.9 Score=40.30 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 369 GTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 369 ~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.|+++....+.++.++|.++|+.+++.|.+++++|.+++..|..
T Consensus 2 ~a~~a~~~w~~~~~~~R~~~l~~l~~~l~~~~~~l~~~~~~e~G 45 (367)
T cd06534 2 AARAAFKAWAALPPAERAAILRKIADLLEERREELAALETLETG 45 (367)
T ss_pred hHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57888999999999999999999999999999999988888764
No 286
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=69.91 E-value=9.7 Score=41.31 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|.++-..
T Consensus 41 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 85 (487)
T PRK09457 41 AAVRAARAAFPAWARLSFEERQAIVERFAALLEENKEELAEVIAR 85 (487)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345678888889999999999999999999999999998876443
No 287
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=68.74 E-value=9.4 Score=41.13 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
++...|+.|...-+.++.++|.++|..+++.|++++++|.+.-..|
T Consensus 2 ~~v~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 47 (449)
T cd07136 2 SLVEKQRAFFKTGATKDVEFRIEQLKKLKQAIKKYENEILEALKKD 47 (449)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999998765554
No 288
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=68.63 E-value=11 Score=40.00 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|....+.++.++|.++|+.+++.|++++++|...-.+|
T Consensus 3 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e 48 (429)
T cd07100 3 AALDRAHAAFLAWRKTSFAERAALLRKLADLLRERKDELARLITLE 48 (429)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999987665554
No 289
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=68.45 E-value=1.1e+02 Score=32.65 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=100.8
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHhhc----CCC---CeEEeec---CHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTKML----PRY---PLHSQVS---TREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al----~~~---~~v~~v~---~r~~~ 261 (462)
.+.|.|++.-|.-+- .|-+..- +.....- .+|.+.| ..+ +.+.++. ..+.+
T Consensus 84 ~~~p~g~v~Hi~agN-vp~~~~~S~~~~lL~gn~nivK~ss~d~~~~-~~l~~~l~~~~~~~~l~~~i~v~~~~~~d~~~ 161 (399)
T PF05893_consen 84 RAFPRGLVFHIAAGN-VPLVGFYSLVRGLLSGNANIVKLSSRDPFLA-PALLRSLAEIDPEHPLADSIAVVYWPGGDEEL 161 (399)
T ss_pred hccCCceEEEEcCCC-ccchHHHHHHHHHHhCCceEEECCCCchhHH-HHHHHHHHhhCccchhhhcEEEEEecCCchHH
Confidence 489999998887554 5543111 2222222 3444333 332 6677773 34455
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCC-CcceeeeccceeEEEEccCCCHHHHHHHH-HcccCCCCCCCCchhHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-HIPVLGHAEGICHVYVDKDADIRKAIKIA-RSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~-~iPvi~~~~G~ch~yvd~~ad~~~a~~i~-~nak~~~~~~~~~~~~~~~ 339 (462)
.+.+. ...|.+|--||..-|+++.+... +...|.+|.-.--.|+++++++++++.-+ .|.-.... -
T Consensus 162 ~~~~~--~~~D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~~~~~~~a~~~a~Di~~~dQ----------~ 229 (399)
T PF05893_consen 162 EEALS--QQADAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAEAELEEAARRLANDIFLFDQ----------Q 229 (399)
T ss_pred HHHHH--HHCCEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCchhHHHHHHHHHHHHHHhhC----------c
Confidence 55553 45799999999999999998553 68899999999999999999877766533 33322211 1
Q ss_pred HHhhhcccccccChhhHHHHHHhHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q psy11677 340 YNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQ--GLNPEDRAKAIYNLAD 394 (462)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As~~L~--~ls~~~rn~aL~~iA~ 394 (462)
.|.+=|-+.=... --..+.+++..|...-.+..+.+. ..+.++++++......
T Consensus 230 aCsSp~~ifv~~g--~~~~~~~f~~~L~~~L~~~~~~~p~~~~s~~~~~~~~~~r~~ 284 (399)
T PF05893_consen 230 ACSSPQVIFVETG--DGDSVEEFAERLAEALERAAERYPRGELSIDEAAAISSLRAE 284 (399)
T ss_pred ccCCCeEEEEECC--CcccHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 3444443331111 123444555555555555555543 3566666666655544
No 290
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=68.26 E-value=12 Score=41.67 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 363 GSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 363 ~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
....+..|++|....+.++.++|.++|+.+++.|.+++++|..+...|.
T Consensus 86 v~~ai~aA~~A~~~W~~~~~~~R~~il~~~a~~l~~~~~ela~a~~~e~ 134 (549)
T cd07127 86 PDALLAAARAAMPGWRDAGARARAGVCLEILQRLNARSFEMAHAVMHTT 134 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999988754
No 291
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=68.14 E-value=11 Score=40.50 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|...-++++.++|.++|.++++.|++++++|-..-..|.
T Consensus 33 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 79 (462)
T PRK13968 33 NALQLAAAGFRDWRETNIDYRAQKLRDIGKALRARSEEMAQMITREM 79 (462)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 35567888999999999999999999999999999999887665553
No 292
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=68.08 E-value=12 Score=40.13 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|.+..+.++.++|.++|+++++.|.++++++..+-..|
T Consensus 25 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 70 (456)
T cd07145 25 EAIEVAEKAKDVMSNLPAYKRYKILMKVAELIERRKEELAKLLTIE 70 (456)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4566788888999999999999999999999999999887654444
No 293
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=67.93 E-value=10 Score=41.43 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|...-+.++.++|.+.|+++++.|++++++|.++-.+|.
T Consensus 14 ~av~~a~~af~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~l~~e~ 60 (484)
T PLN02174 14 ILVTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDL 60 (484)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 35566888888899999999999999999999999999998877775
No 294
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=67.92 E-value=11 Score=40.80 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|.+..+.++.++|.++|+++++.|.+++++|...
T Consensus 63 ~ai~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 104 (480)
T cd07111 63 AAVAAARTAFESWSALPGHVRARHLYRIARHIQKHQRLFAVL 104 (480)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456678999999999999999999999999999999998543
No 295
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=67.60 E-value=11 Score=40.57 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|..
T Consensus 43 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 83 (475)
T PRK13473 43 AAVAAADAAFPEWSQTTPKERAEALLKLADAIEENADEFAR 83 (475)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999888764
No 296
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=67.40 E-value=13 Score=41.43 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
...++.|++|....+.++.++|.++|+.+++.|++++++|-.+...|
T Consensus 87 ~~av~aA~~A~~~W~~~~~~~R~~vL~~~a~~l~~~~~elA~~~~~e 133 (551)
T TIGR02288 87 DALLDAAHAALPGWRDAGARARAGVCLEILQRLNARSFEIAHAVMHT 133 (551)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 45577899999999999999999999999999999999999988886
No 297
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=65.55 E-value=9.3 Score=41.24 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.. ..+.++.++|.++|+++++.|++++++|.++..+|.
T Consensus 39 ~av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 87 (482)
T cd07119 39 RAIAAARRAFDSGEWPHLPAQERAALLFRIADKIREDAEELARLETLNT 87 (482)
T ss_pred HHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34556777764 478899999999999999999999999998877763
No 298
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=65.13 E-value=14 Score=34.56 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=42.7
Q ss_pred EEEecCcccccCCCC--CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHH
Q psy11677 51 ILMSDVNGIYTKAPW--EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIV 128 (462)
Q Consensus 51 IiLTDVdGVY~~dP~--~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l 128 (462)
.+.+|+|||+++.-- ++.+...+.++ ...|| +...+.+.|+++.|+++.....+...+
T Consensus 9 ~~v~d~dGv~tdg~~~~~~~g~~~~~~~---------------~~D~~-----~~~~L~~~Gi~laIiT~k~~~~~~~~l 68 (169)
T TIGR02726 9 LVILDVDGVMTDGRIVINDEGIESRNFD---------------IKDGM-----GVIVLQLCGIDVAIITSKKSGAVRHRA 68 (169)
T ss_pred EEEEeCceeeECCeEEEcCCCcEEEEEe---------------cchHH-----HHHHHHHCCCEEEEEECCCcHHHHHHH
Confidence 456899999996421 34444333333 23444 334455679999999988887777777
Q ss_pred cCCccccccc
Q psy11677 129 AGRKIGTFFT 138 (462)
Q Consensus 129 ~g~~~GT~I~ 138 (462)
..-+...+|.
T Consensus 69 ~~lgi~~~f~ 78 (169)
T TIGR02726 69 EELKIKRFHE 78 (169)
T ss_pred HHCCCcEEEe
Confidence 7665544554
No 299
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=64.90 E-value=14 Score=39.89 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 365 LFISGTRSGSRV-LQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 365 ~~~~~Ar~As~~-L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
..++.|++|.+. .+.++.++|.++|+++++.|.+++++|.++-..
T Consensus 41 ~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 86 (477)
T cd07113 41 AAVASAWRAFVSAWAKTTPAERGRILLRLADLIEQHGEELAQLETL 86 (477)
T ss_pred HHHHHHHHHhHhhhccCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 345567777774 678999999999999999999999998866333
No 300
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=63.89 E-value=46 Score=38.01 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHH-HHHH-cCCe
Q psy11677 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSAT-WALD-RGVS 112 (462)
Q Consensus 35 D~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~-~a~~-~Gv~ 112 (462)
+.....+...-.+.+-++++|.||-+...-.+|... .+...+..+. .+.+ .|+.
T Consensus 478 ~~~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~------------------------~~~~~~~~~L~~L~~d~g~~ 533 (726)
T PRK14501 478 AAAEEIIARYRAASRRLLLLDYDGTLVPFAPDPELA------------------------VPDKELRDLLRRLAADPNTD 533 (726)
T ss_pred cCHHHHHHHHHhccceEEEEecCccccCCCCCcccC------------------------CCCHHHHHHHHHHHcCCCCe
Confidence 345555666667888999999999776421111111 1112233333 3344 3999
Q ss_pred EEEEeCCChhHHHHHHcCC
Q psy11677 113 VVICNGMQKEAIKQIVAGR 131 (462)
Q Consensus 113 v~I~sG~~~~~L~~~l~g~ 131 (462)
|+|++|+....+.+.|..-
T Consensus 534 V~ivSGR~~~~l~~~~~~~ 552 (726)
T PRK14501 534 VAIISGRDRDTLERWFGDL 552 (726)
T ss_pred EEEEeCCCHHHHHHHhCCC
Confidence 9999999999999988644
No 301
>KOG2454|consensus
Probab=63.87 E-value=24 Score=37.56 Aligned_cols=119 Identities=23% Similarity=0.271 Sum_probs=85.8
Q ss_pred CCCceeeEEEE-eCCCCc--cc-------------c--c-ccccccchHHHHH---hhcCCC----CeEEeecCHHHHHH
Q psy11677 210 GTPVEVLAEIW-KNETLN--TT-------------V--P-KKHAKTSQCKYFT---KMLPRY----PLHSQVSTREEISD 263 (462)
Q Consensus 210 ~~PlGVi~~Iy-Esr~~P--nv-------------~--~-~~ea~~sn~~~l~---~al~~~----~~v~~v~~r~~~~~ 263 (462)
--|+||||.|- ... | |. + + +..+..|-|...- .+|+.. ++||++..-..+.+
T Consensus 186 yePLGVI~aiVsWNY--PfHN~lgPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~ 263 (583)
T KOG2454|consen 186 YEPLGVIGAIVSWNY--PFHNILGPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAE 263 (583)
T ss_pred EeecceEEEeeecCC--chhhhhhHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHh
Confidence 45999999882 233 4 21 1 1 1445566645444 555554 88998885445566
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-|.-..-+|=++=-||...-++|.+++. -.||-.--.|--...+-.|||++.-..|+..+-.|--|-
T Consensus 264 ~ltSh~g~khitFiGSqpvak~i~~~AAk~LTPv~lELGGKDafIi~dda~l~~v~si~mRGtfQSsGQ 332 (583)
T KOG2454|consen 264 ALTSHSGVKHITFIGSQPVAKMIMRNAAKTLTPVTLELGGKDAFIICDDADLSHVASIAMRGTFQSSGQ 332 (583)
T ss_pred HhhcCCCcceEEEecCcHHHHHHHHhhhhhcCcEEEeecCcccEEEeccccHHHHHHHHHhhhhhhcCC
Confidence 6666666999999999998888887652 379988778888888889999999999999987775554
No 302
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=63.73 E-value=16 Score=39.38 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|...-..|
T Consensus 41 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 86 (473)
T cd07097 41 AAIAAAAAAFPAWRRTSPEARADILDKAGDELEARKEELARLLTRE 86 (473)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3556788899999999999999999999999999988886554433
No 303
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=63.24 E-value=16 Score=39.22 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQ-GLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~-~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|....+ +++.++|.++|+++++.|++++++|..+=..|
T Consensus 23 ~av~~A~~a~~~w~w~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e 69 (459)
T cd07089 23 AAIAAARRAFDTGDWSTDAEERARCLRQLHEALEARKEELRALLVAE 69 (459)
T ss_pred HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45567888888888 99999999999999999999999887655554
No 304
>KOG2451|consensus
Probab=63.10 E-value=50 Score=35.31 Aligned_cols=120 Identities=20% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCCCceeeEEEE-eCCCCcccccc---------------cccccchH--HHHHhhcCCC----CeEEeec----CHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK---------------KHAKTSQC--KYFTKMLPRY----PLHSQVS----TREEIS 262 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~---------------~ea~~sn~--~~l~~al~~~----~~v~~v~----~r~~~~ 262 (462)
++-|+||+|+|- +.. |-..+. |-+..|=. .++++-.+++ +....|+ +-.++.
T Consensus 156 ikQPvGV~alItPWNF--P~AMItRK~gAALAaGCTvVvkPs~~TPlsaLala~lA~~AGiP~Gv~NVit~~~~~a~eig 233 (503)
T KOG2451|consen 156 IKQPVGVVALITPWNF--PAAMITRKAGAALAAGCTVVVKPSEDTPLSALALAKLAEEAGIPAGVLNVITADASNAAEIG 233 (503)
T ss_pred EeccceeEEEecCcCC--hHHHHHhHHHHHHhcCceEEEccCCCCchHHHHHHHHHHHcCCCCcceEEEecCCCChHHHH
Confidence 489999999994 223 653222 33333332 4444333344 7888887 345677
Q ss_pred HHhcCCCCccEEeecCChhHHHHHHhhCC-Cc-ceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 263 DLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-HI-PVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 263 ~ll~~~~~iDliIPrG~~~lv~~v~~~s~-~i-Pvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+.|--+..|-=|==.||-..=+-...+|. +| -|----.||....|=.|||+++|++=..-+|-+..|-
T Consensus 234 ~~lctsp~VrkisFTGST~VGKiL~~qsastvKkvslELGGNAPfIVFddadld~Av~g~mA~KFr~~GQ 303 (503)
T KOG2451|consen 234 KELCTSPDVRKISFTGSTNVGKILMAQSASTVKKVSLELGGNAPFIVFDDADLDQAVEGAMACKFRNSGQ 303 (503)
T ss_pred HHhhcCCceeeEEeeccchHHHHHHHhhhhhhhheehhhcCCCceEEecCcCHHHHHHHHHHhhhccCCc
Confidence 77766766777888898876666555542 11 2233457999999999999999999999998775543
No 305
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=62.67 E-value=18 Score=39.02 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
..++.|++|.+..+.++.++|.++|+++++.|.++++++.+.=.+
T Consensus 27 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 71 (457)
T PRK09406 27 AAIARAHARFRDYRTTTFAQRARWANAAADLLEAEADQVAALMTL 71 (457)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 456678999999999999999999999999999999988644333
No 306
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=61.84 E-value=18 Score=39.46 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANS 408 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~ 408 (462)
..++.|+.|....+.++.++|.++|+++++.|+++++++-..-.
T Consensus 73 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~ 116 (511)
T TIGR01237 73 HALQIAKKAFEAWKKTPVRERAGILRKAAAIMERRRHELNALIC 116 (511)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 34557888889999999999999999999999999988865433
No 307
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=61.80 E-value=11 Score=40.94 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=48.4
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|.. .-+.++.++|.++|+++|+.|++++++|..+...|.-+ -+.+++...+...-..++.++...++
T Consensus 48 av~~A~~A~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk----~~~~a~~~ev~~~~~~l~~~a~~~~~ 123 (486)
T cd07140 48 AVAAAKEAFENGEWGKMNARDRGRLMYRLADLMEEHQEELATIESLDSGA----VYTLALKTHVGMSIQTFRYFAGWCDK 123 (486)
T ss_pred HHHHHHHhcCCCchhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677765 47789999999999999999999999998776655311 01122222233344555666555554
Q ss_pred H
Q psy11677 444 I 444 (462)
Q Consensus 444 i 444 (462)
+
T Consensus 124 ~ 124 (486)
T cd07140 124 I 124 (486)
T ss_pred h
Confidence 4
No 308
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=61.61 E-value=18 Score=38.58 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
..++.|++|....+.++.++|.++|+++++.|++++++|-..-..
T Consensus 4 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~ 48 (431)
T cd07095 4 AAVAAARAAFPGWAALSLEERAAILRRFAELLKANKEELARLISR 48 (431)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356778999999999999999999999999999999888654443
No 309
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=61.37 E-value=90 Score=31.72 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHH
Q psy11677 382 PEDRAKAIYNLADLLISKQADLLDANSKDLSDA 414 (462)
Q Consensus 382 ~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a 414 (462)
-+++..-|..+.+.|.......+..+...++..
T Consensus 193 l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l 225 (319)
T PF02601_consen 193 LEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNL 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666676666654
No 310
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=61.30 E-value=17 Score=39.34 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|....+.++.++|.++|+.+++.|+++++++..+
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 83 (475)
T cd07117 42 RAVKAAQEAFKTWRKTTVAERANILNKIADIIDENKELLAMV 83 (475)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 345578888999999999999999999999999999988744
No 311
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=60.95 E-value=9.9 Score=41.97 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=38.3
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHh----cHHHHHHH
Q psy11677 366 FISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDA----NSKDLSDA 414 (462)
Q Consensus 366 ~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A----N~~Dl~~a 414 (462)
.++.|++|.. ..+.++.++|.++|+++++.|++++++|.++ |-|.+..+
T Consensus 100 Av~aA~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~GK~~~~a 154 (538)
T PLN02466 100 AVAAARKAFDEGPWPKMTAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQS 154 (538)
T ss_pred HHHHHHHHcCcCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH
Confidence 3345677765 3788999999999999999999999999887 44444444
No 312
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=60.77 E-value=15 Score=39.72 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 366 FISGTRSGSR---VLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 366 ~~~~Ar~As~---~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
.++.|++|.+ ..+.++.++|.++|+++++.|.+++++|..+
T Consensus 49 av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 92 (481)
T cd07141 49 AVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASL 92 (481)
T ss_pred HHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4456777776 5789999999999999999999999988755
No 313
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=59.03 E-value=21 Score=38.74 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|....+.++.++|.++|+++++.|+++++++...-..|
T Consensus 52 ~av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 97 (482)
T PRK11241 52 AAIDAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLE 97 (482)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3445778888889999999999999999999999999887544433
No 314
>PLN02278 succinic semialdehyde dehydrogenase
Probab=58.94 E-value=22 Score=38.82 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++++.|+++++++..+-.+|.
T Consensus 66 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 112 (498)
T PLN02278 66 DAIASAHDAFPSWSKLTASERSKILRRWYDLIIANKEDLAQLMTLEQ 112 (498)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 35567888888899999999999999999999999999887655553
No 315
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=58.33 E-value=20 Score=38.41 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
..++.|+.|...-+.++.++|.++|+.+++.|+++++++..
T Consensus 3 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 43 (442)
T cd07084 3 RALLAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAA 43 (442)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45678899999999999999999999999999999888863
No 316
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=58.22 E-value=23 Score=38.30 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
.++.|++|....+.++.++|.++|+++++.|+++++++...=.+
T Consensus 43 av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 86 (472)
T TIGR03374 43 AVRAADAAFAEWGQTTPKARAECLLKLADVIEENAQVFAELESR 86 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44568888888999999999999999999999998888754333
No 317
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=57.03 E-value=21 Score=41.64 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANS 408 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~ 408 (462)
..+..|++|.+..+.++.++|.++|+++++.|+++++++-+.-.
T Consensus 16 ~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~ 59 (862)
T PRK13805 16 ALVEKAKKAQEEFATFTQEQVDKIVRAAALAALDARIPLAKMAV 59 (862)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999888764433
No 318
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=56.45 E-value=60 Score=36.36 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=84.1
Q ss_pred CCCceeeEEEE-eCCCCcccccc---------------cccccchHHHHH---hhcCCC----CeEEeecCHH-HHHHHh
Q psy11677 210 GTPVEVLAEIW-KNETLNTTVPK---------------KHAKTSQCKYFT---KMLPRY----PLHSQVSTRE-EISDLL 265 (462)
Q Consensus 210 ~~PlGVi~~Iy-Esr~~Pnv~~~---------------~ea~~sn~~~l~---~al~~~----~~v~~v~~r~-~~~~ll 265 (462)
.-|+|.+-.|. +.. |=.+.. |-|..|- ..-+ +-|.++ +++|+++.|- .+..-|
T Consensus 234 ~~~~G~vVcISPWNF--PLAIFtGqiaAAL~aGN~VlAKPAEqTp-LIAa~aV~ll~eAGvP~~~lqLLpG~G~tvGa~L 310 (769)
T COG4230 234 HRPLGPVVCISPWNF--PLAIFTGQIAAALAAGNSVLAKPAEQTP-LIAAQAVRLLHEAGVPPGVLQLLPGRGETVGAAL 310 (769)
T ss_pred cCCCCcEEEECCCCc--hHHHHHhHHHHHHHcCCccccCcccccc-HHHHHHHHHHHHcCCChhhHHhcCCCCcccchhh
Confidence 67888877774 233 532211 6666665 2222 444444 9999999554 699999
Q ss_pred cCCCCccEEeecCChhHHHHHHhh-----CCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQK-----SQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~-----s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
..+..++=|+=.||-..-+.++++ -+-||.|--..|-.-.+||.+|=.|+.+.-+++|-.+
T Consensus 311 ~~darv~GV~FTGSTevA~li~~~LA~r~g~~~pLIAETGGqNAMIVDSsAL~EQVv~Dvl~SAFd 376 (769)
T COG4230 311 TADARVAGVMFTGSTEVARLIQRQLAKRQGRPIPLIAETGGQNAMIVDSSALAEQVVADVLASAFD 376 (769)
T ss_pred hcCcccceEEEeCcHHHHHHHHHHHhhcCCCCCceEeccCCcceEEeechhhHHHHHHHHHHHHhh
Confidence 999999999999999877766543 3358999999999999999999999998888776443
No 319
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=56.42 E-value=23 Score=38.75 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
..++.|++|....+.++.++|.++|.++++.|.+++++|..
T Consensus 77 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 117 (514)
T PRK03137 77 KAMQAALEAFETWKKWSPEDRARILLRAAAIIRRRKHEFSA 117 (514)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 35567888999999999999999999999999999888764
No 320
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=56.38 E-value=25 Score=38.48 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.++.|++|....+.++.++|.++|+.+++.|++++++|..+-.+|
T Consensus 79 av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 123 (500)
T TIGR01238 79 AIDSAQQAFPTWNATPAKERAAKLDRLADLLELHMPELMALCVRE 123 (500)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445688888899999999999999999999999999988665554
No 321
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=56.04 E-value=27 Score=37.99 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|....+.++.++|.++|+++++.|.++++++...
T Consensus 59 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 100 (500)
T cd07083 59 AALEAAWAAFKTWKDWPQEDRARLLLKAADLLRRRRRELIAT 100 (500)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 345678899999999999999999999999999999888753
No 322
>KOG2450|consensus
Probab=55.53 E-value=17 Score=39.66 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHH
Q psy11677 369 GTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLL 404 (462)
Q Consensus 369 ~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il 404 (462)
.||.|.. .....+..+|..+|+.+|+.++++++.+-
T Consensus 66 aAr~Af~~~~W~~~~~~~R~~~L~~~Adlie~~~~~lA 103 (501)
T KOG2450|consen 66 AARSAFKLVDWAKRDAAERGRLLRKLADLIEQDADVLA 103 (501)
T ss_pred HHHHhcCcCccccCCHHHHHHHHHHHHHHHHhhhHHHh
Confidence 4566666 57889999999999999999999888764
No 323
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=54.94 E-value=27 Score=38.29 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.++.|++|.+..+.++.++|.++|+++|+.|+++++++.+.=..|
T Consensus 61 av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e 105 (508)
T PLN02315 61 GLRACEEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLE 105 (508)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345778888899999999999999999999999998877544433
No 324
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=54.10 E-value=25 Score=37.75 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 366 FISGTRSGSRV-LQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 366 ~~~~Ar~As~~-L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
.++.|++|... -..++.++|.++|+++++.|++++++|...-..
T Consensus 26 av~~A~~a~~~~~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~ 70 (455)
T cd07148 26 ALDTAHALFLDRNNWLPAHERIAILERLADLMEERADELALLIAR 70 (455)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566776664 345899999999999999999999998754443
No 325
>PLN02467 betaine aldehyde dehydrogenase
Probab=53.71 E-value=25 Score=38.45 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHHHHHH-----HHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 367 ISGTRSGS-----RVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 367 ~~~Ar~As-----~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
++.|++|. ...+.++.++|.++|+++++.|++++++|...=.+|
T Consensus 51 v~~A~~a~~~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 99 (503)
T PLN02467 51 VEAARKAFKRNKGKDWARTTGAVRAKYLRAIAAKITERKSELAKLETLD 99 (503)
T ss_pred HHHHHHHhhhcccchhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44567777 678999999999999999999999999987544443
No 326
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=51.71 E-value=26 Score=38.44 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=35.1
Q ss_pred HHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 365 LFISGTRSG-SRVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 365 ~~~~~Ar~A-s~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
...+.|++| ....+.++.++|.++|+++|+.|++++++|.+
T Consensus 40 ~Av~~A~~A~~~~W~~~~~~~Ra~~L~~~a~~l~~~~~~la~ 81 (513)
T cd07128 40 AAVAYAREKGGPALRALTFHERAAMLKALAKYLMERKEDLYA 81 (513)
T ss_pred HHHHHHHHhhhchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567776 47799999999999999999999999999975
No 327
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=51.17 E-value=35 Score=37.25 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
..++.|++|....+.++.++|.++|.++++.|.++++++..+=..
T Consensus 73 ~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~ 117 (512)
T cd07124 73 AAVQAARAAFPTWRRTPPEERARLLLRAAALLRRRRFELAAWMVL 117 (512)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 345678888889999999999999999999999998887654333
No 328
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=48.92 E-value=39 Score=37.13 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-chHHHHHhcHH
Q psy11677 367 ISGTRSGSRVLQGLNPEDRAKAIYNLADLLIS-KQADLLDANSK 409 (462)
Q Consensus 367 ~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~-~~~~Il~AN~~ 409 (462)
++.|++|...-+.++.++|.++|+++++.|++ +++++..+=..
T Consensus 75 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~ela~~~~~ 118 (522)
T cd07123 75 IEAALEARKEWARMPFEDRAAIFLKAADLLSGKYRYELNAATML 118 (522)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 45678888889999999999999999999996 78888765443
No 329
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=48.90 E-value=33 Score=37.80 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 365 LFISGTRSGS-RVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 365 ~~~~~Ar~As-~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
..++.|++|. ...+.++.++|.++|+++|+.|+++++++..
T Consensus 44 ~Av~aA~~A~~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~ 85 (521)
T PRK11903 44 AAFAFAREQGGAALRALTYAQRAALLAAIVKVLQANRDAYYD 85 (521)
T ss_pred HHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677774 7789999999999999999999999888763
No 330
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=48.66 E-value=25 Score=37.65 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 366 FISGTRSGSRV--LQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 366 ~~~~Ar~As~~--L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.++.|++|... .+.++.++|.++|.++++.|.++++++...-.+|
T Consensus 24 av~~A~~a~~~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e 70 (454)
T cd07118 24 AVAAARKAFDKGPWPRMSGAERAAVLLKVADLIRARRERLALIETLE 70 (454)
T ss_pred HHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44567777653 7789999999999999999999999887665554
No 331
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=47.27 E-value=40 Score=37.93 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
.++.|++|...-+.++.++|.++|+.+++.|++++++|...
T Consensus 156 Av~aA~~A~~~W~~~~~~eR~~iL~k~a~~L~~~~~ela~~ 196 (604)
T PLN02419 156 AVSAAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMN 196 (604)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44568888888999999999999999999999999988654
No 332
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=47.23 E-value=41 Score=37.10 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hchHHHHHhcHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLI-SKQADLLDANSK 409 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~-~~~~~Il~AN~~ 409 (462)
.++.|++|...-+.++.++|.++|+++++.|+ ++++++..+=..
T Consensus 74 av~~A~~a~~~W~~~~~~~R~~~L~k~a~~l~~~~~~~la~~~~~ 118 (533)
T TIGR01236 74 AVEAALDAKKDWSALPFYDRAAIFLKAADLLSGPYREEILAATML 118 (533)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Confidence 44568888888999999999999999999999 588888655443
No 333
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=46.02 E-value=41 Score=36.57 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 369 GTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 369 ~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.|+.+...-+.++.++|.++|+++|+.|+++++++-..-..|
T Consensus 44 aA~~a~~~W~~~~~~eR~~iL~~~a~~l~~~~~ela~~~~~e 85 (472)
T COG1012 44 AARAAFEAWSRLSAEERAAILRRIADLLEARAEELAALITLE 85 (472)
T ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345555567789999999999999999999999986544444
No 334
>COG0432 Uncharacterized conserved protein [Function unknown]
Probab=44.80 E-value=35 Score=31.19 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=38.2
Q ss_pred ccchhhhhHHHhHHHHHHHHhcCCccc----cChHHHHHHH-HHHcCCCeEEEEec
Q psy11677 5 TTRLCEQHFLTNFNELFRSIFQKLISI----KDNDSLAAML-AAEIQADLLILMSD 55 (462)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~~~~~ei~~----gdnD~lAa~l-A~~l~Ad~LIiLTD 55 (462)
+|+ +|+...+-|.+.|+.+.-.+-.+ +++|...+.+ |..+|....|-.++
T Consensus 52 inE-~ep~l~~Di~~~l~~lvP~~~~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~ 106 (137)
T COG0432 52 INE-AEPGLKEDIERFLEKLVPEGAGYRHDEEGPDNAPAHLKASLLGPSLTIPVIN 106 (137)
T ss_pred Eec-CCCcHHHHHHHHHHHhCCCCCCcccccCCCCchHHHHHHHhcCceEEEEEeC
Confidence 467 99999999999999998444434 5665555555 88899988877664
No 335
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=44.17 E-value=32 Score=37.55 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 367 ISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 367 ~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
++.|++|.+ ..+.++.++|.++|.++++.|+++++++.+.-.+|.
T Consensus 64 v~~A~~A~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 110 (501)
T PLN02766 64 VKAAREAFDHGPWPRMSGFERGRIMMKFADLIEEHIEELAALDTIDA 110 (501)
T ss_pred HHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 445777765 478899999999999999999999998876555543
No 336
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=43.59 E-value=34 Score=37.29 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=33.8
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 366 FISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 366 ~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
.++.|++|.. ..+.++.++|.++|+++++.|.++++++.++
T Consensus 62 av~aA~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 104 (494)
T PRK09847 62 AVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALL 104 (494)
T ss_pred HHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4456777765 4778999999999999999999999888654
No 337
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=42.36 E-value=2.4e+02 Score=30.08 Aligned_cols=24 Identities=38% Similarity=0.744 Sum_probs=18.6
Q ss_pred ccE-EeecCChh-----------HHHHHHhhCCCccee
Q psy11677 271 IDL-IIPRGSSD-----------LVRSIQQKSQHIPVL 296 (462)
Q Consensus 271 iDl-iIPrG~~~-----------lv~~v~~~s~~iPvi 296 (462)
+|+ ||-|||.+ +++.|.+. .+|||
T Consensus 193 ~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~--~~Pvi 228 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWAFNDEAVARAIAAS--RIPVI 228 (438)
T ss_pred CCEEEEecCCCCHHHhhccCcHHHHHHHHcC--CCCEE
Confidence 575 56899976 78888876 49998
No 338
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=41.81 E-value=38 Score=36.43 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=36.9
Q ss_pred HHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|+.|.+ ..+.++.++|.++|+.+++.|.+++++|...-.+|
T Consensus 28 ~av~~a~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e 75 (462)
T cd07112 28 RAVAAARRAFESGVWSRLSPAERKAVLLRLADLIEAHRDELALLETLD 75 (462)
T ss_pred HHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556777765 47889999999999999999999999987665554
No 339
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=41.80 E-value=51 Score=37.49 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=35.6
Q ss_pred HHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 365 LFISGTRSG-SRVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 365 ~~~~~Ar~A-s~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
..++.|++| .+.-+.++.++|.++|+++|+.|+++++++.+
T Consensus 44 ~Av~~A~~A~~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~ 85 (675)
T PRK11563 44 AALAYAREVGGPALRALTFHERAAMLKALAKYLLERKEELYA 85 (675)
T ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445678887 57899999999999999999999999999864
No 340
>KOG2452|consensus
Probab=40.93 E-value=63 Score=35.30 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCCCceeeEEEEeCCCCcccccccccccchHHHHH-hhcCCC---CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPKKHAKTSQCKYFT-KMLPRY---PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLV 283 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~~ea~~sn~~~l~-~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv 283 (462)
.+-|+||+|+|-.=. .|-...+ ..+. .+|+ +.|+-+ +.|.+++ +-..+..-|..+..+--|==.||...=
T Consensus 560 ~~epigv~g~i~pwn-yplmmls---wk~a-aclaa~~~k~~e~sgvini~~gsgslvg~rls~hpdvrkigftgsteig 634 (881)
T KOG2452|consen 560 RKEPVGVCGIIIPWN-YPLMMLS---WKTA-ACLAAQVLKFAELTGVVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVG 634 (881)
T ss_pred ecCcceeEEEeccCC-chHHHHH---HHHH-HHHHHHHhhhhhhcceEEEecCCcchhccccccCCccceeccccchHHH
Confidence 388999999994211 0322211 1222 3333 223222 8888888 677777777666555556667877766
Q ss_pred HHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 284 RSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 284 ~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
..|+++-. ---|--.-.|-..+.+=.++|++||++....|-.+.-|-
T Consensus 635 ~~im~sca~snikkvslelgg~sp~iifad~dl~kav~~~~~~vff~kge 684 (881)
T KOG2452|consen 635 KHIMKSCAISNVKKVSLELGGESPFIIFADCDLNKAVQMGMSSVFFSKGE 684 (881)
T ss_pred HHHHHHHhhcchheeeeeccCCCceEEEecCcHHHHHHhhccceeecCCc
Confidence 66555321 123444456777888889999999999988776554443
No 341
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=38.21 E-value=48 Score=37.70 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH
Q psy11677 366 FISGTRSG-SRVLQGLNPEDRAKAIYNLADLLISKQADLLD 405 (462)
Q Consensus 366 ~~~~Ar~A-s~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~ 405 (462)
.++.|++| ...-+.++.++|.++|+++|+.|+++++++..
T Consensus 41 Av~~A~~aa~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~ 81 (663)
T TIGR02278 41 AVAWAREVGGPALRALTFHERARMLKALAQYLSERKEALYA 81 (663)
T ss_pred HHHHHHHhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567775 67799999999999999999999999999974
No 342
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=37.72 E-value=48 Score=27.67 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=25.0
Q ss_pred CccccchhhhhHHHhHHHHHHHHhcCCccccChHHHHHHHHHHcCCCeEEEEecCc
Q psy11677 2 FGHTTRLCEQHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVN 57 (462)
Q Consensus 2 ~~~~~~~~~~~~~~~~~e~~~~~~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVd 57 (462)
+||..++..+..-.. -..++.+..+....-+++.+|++||-|
T Consensus 29 ~Ghl~~~~~~~~~~~--------------~~~~~~i~~l~~~~~~~~~iiiatD~D 70 (100)
T PF01751_consen 29 SGHLLELAKPEDYDP--------------KDKKKQIKNLKKLLKKADEIIIATDPD 70 (100)
T ss_dssp SSSSEESTTSSHHHC--------------HTTHHHHHHHHHHHHSCSEEEEEC-SS
T ss_pred CCccccccccccccc--------------ccccccchhhHHHhhhccEeeecCCCC
Confidence 577777666443322 233444555555557899999999754
No 343
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=36.13 E-value=83 Score=28.43 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=39.3
Q ss_pred EEEecCcccccCCCC--CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHH
Q psy11677 51 ILMSDVNGIYTKAPW--EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIV 128 (462)
Q Consensus 51 IiLTDVdGVY~~dP~--~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l 128 (462)
++++|.||.+.+++. .++++.+..+...+. .+.....+.|+++.|+++........++
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--------------------~~i~~Lk~~G~~i~IvTn~~~~~~~~~l 62 (154)
T TIGR01670 3 LLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--------------------YGIRCALKSGIEVAIITGRKAKLVEDRC 62 (154)
T ss_pred EEEEeCceeEEcCeEEECCCCcEEEEEechhH--------------------HHHHHHHHCCCEEEEEECCCCHHHHHHH
Confidence 467899998876432 334444444422111 0233445568888888887777666666
Q ss_pred cCCccccccc
Q psy11677 129 AGRKIGTFFT 138 (462)
Q Consensus 129 ~g~~~GT~I~ 138 (462)
..-+.-.+|.
T Consensus 63 ~~~gi~~~~~ 72 (154)
T TIGR01670 63 KTLGITHLYQ 72 (154)
T ss_pred HHcCCCEEEe
Confidence 6554434443
No 344
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=35.60 E-value=2.5e+02 Score=30.62 Aligned_cols=28 Identities=29% Similarity=0.678 Sum_probs=20.0
Q ss_pred CCCCccEE-eecCChh-----------HHHHHHhhCCCccee
Q psy11677 267 MEKHIDLI-IPRGSSD-----------LVRSIQQKSQHIPVL 296 (462)
Q Consensus 267 ~~~~iDli-IPrG~~~-----------lv~~v~~~s~~iPvi 296 (462)
..+.+|++ |-|||.+ +++.|... +||||
T Consensus 190 ~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s--~iPvI 229 (440)
T COG1570 190 QRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAAS--RIPVI 229 (440)
T ss_pred ccCCCCEEEEecCcchHHHHhccChHHHHHHHHhC--CCCeE
Confidence 34447765 5699976 67888775 49998
No 345
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=35.29 E-value=74 Score=24.48 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=17.5
Q ss_pred eEEEEccCCCHHHHHHHHHc
Q psy11677 303 CHVYVDKDADIRKAIKIARS 322 (462)
Q Consensus 303 ch~yvd~~ad~~~a~~i~~n 322 (462)
..|||.+ .|.++|.+|+.+
T Consensus 46 ~~v~V~~-~d~~~A~~il~~ 64 (67)
T PF09413_consen 46 VEVYVPE-EDYERAREILEE 64 (67)
T ss_dssp EEEEEEG-GGHHHHHHHHHH
T ss_pred eEEEECH-HHHHHHHHHHHH
Confidence 8999999 899999999865
No 346
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=34.01 E-value=51 Score=35.48 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 367 ISGTRSGSRV--LQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 367 ~~~Ar~As~~--L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
++.|++|... -+. +.++|.++|+.+++.|++++++|.++-.+|.
T Consensus 25 v~~A~~a~~~~~w~~-~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~ 70 (455)
T cd07120 25 IAAARRAFDETDWAH-DPRLRARVLLELADAFEANAERLARLLALEN 70 (455)
T ss_pred HHHHHHhcCCCccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445655542 344 7899999999999999999999987776664
No 347
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=31.11 E-value=94 Score=37.35 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 363 GSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 363 ~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
....++.|++|...-+.++.++|.++|+++|+.|+++++++.+.-..
T Consensus 587 v~~Ai~aA~~A~~~W~~~~~~~Ra~iL~kaAdll~~~~~eL~~l~~~ 633 (1038)
T PRK11904 587 VEQALAAARAAFPAWSRTPVEERAAILERAADLLEANRAELIALCVR 633 (1038)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566678888889999999999999999999999999988765433
No 348
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=30.75 E-value=3.1e+02 Score=27.43 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=64.7
Q ss_pred HHHhHHHHHHHHhcCCcc---ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCC
Q psy11677 13 FLTNFNELFRSIFQKLIS---IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKS 89 (462)
Q Consensus 13 ~~~~~~e~~~~~~~~ei~---~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s 89 (462)
....+++.++.+-..+|+ |.|-|.-....|..+|||.+=+.| |-|..- ...-...|+..+
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhT---G~yA~a--------~~~~~~~el~~~------ 173 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHT---GPYADA--------KTEAEAAELERI------ 173 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEec---hhhhcC--------CCcchHHHHHHH------
Confidence 346677888888888876 789999999999999999999988 667531 111112233222
Q ss_pred CCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHH
Q psy11677 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQI 127 (462)
Q Consensus 90 ~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~ 127 (462)
..+|..|.+.|+.|.-..|.+.+++..+
T Consensus 174 ----------~~aa~~a~~lGL~VnAGHgLny~Nv~~i 201 (239)
T PRK05265 174 ----------AKAAKLAASLGLGVNAGHGLNYHNVKPI 201 (239)
T ss_pred ----------HHHHHHHHHcCCEEecCCCCCHHhHHHH
Confidence 2467788889999999999998887764
No 349
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=29.47 E-value=35 Score=35.55 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=33.8
Q ss_pred HHHHHHHhc-CCCCccEEeecCCh-----------hHHHHHHhhCCCcceeeeccc
Q psy11677 258 REEISDLLS-MEKHIDLIIPRGSS-----------DLVRSIQQKSQHIPVLGHAEG 301 (462)
Q Consensus 258 r~~~~~ll~-~~~~iDliIPrG~~-----------~lv~~v~~~s~~iPvi~~~~G 301 (462)
+|.+.+..+ +..|.|+|+-|... ..++...+.++ ||||--++|
T Consensus 92 gEsl~Dtarvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~-vPVINa~~~ 146 (335)
T PRK04523 92 EEHIREVARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYST-VPVINMETI 146 (335)
T ss_pred CcCHHHHHHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCC-CCEEECCCC
Confidence 455555543 67789999999874 67888888885 999988887
No 350
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=28.39 E-value=82 Score=31.66 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHc---CCccccccccCCC
Q psy11677 97 DSKVNSATWALDRGVSVVICNGMQKEAIKQIVA---GRKIGTFFTDASA 142 (462)
Q Consensus 97 ~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~---g~~~GT~I~~~~~ 142 (462)
..+++..+.+.. +|+++.+|-.++++.++|. |--+||+|..+..
T Consensus 189 ~~~l~~vr~~~~--~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 189 PEKLKRVREAVP--VPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDGK 235 (254)
T ss_pred HHHHHHHHhcCC--CCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCCE
Confidence 456666665544 8999999999999998885 4557999987654
No 351
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=27.04 E-value=1.2e+02 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhchHHHHHhcH
Q psy11677 379 GLNPEDRAKAIYNLADLLISKQADLLDANS 408 (462)
Q Consensus 379 ~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~ 408 (462)
.++.++|.++|.++++.|+++++++...=.
T Consensus 54 ~~~~~~R~~~l~~~a~~l~~~~~ela~~~~ 83 (472)
T TIGR03250 54 TLTRYERSAILDRAAALLAARKEEISDLIT 83 (472)
T ss_pred hCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 689999999999999999999988764433
No 352
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=26.98 E-value=1.2e+02 Score=37.04 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 362 LGSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 362 ~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
.-...++.|+.|....+.++.++|.++|+++|+.|+++++++.+.=..
T Consensus 591 ~v~~Av~aA~~A~~~W~~~~~~~Ra~iL~raAdll~~~~~eL~~l~~~ 638 (1208)
T PRK11905 591 DVERALAAAQAAFPEWSATPAAERAAILERAADLMEAHMPELFALAVR 638 (1208)
T ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344566778889999999999999999999999999999988765443
No 353
>PLN02527 aspartate carbamoyltransferase
Probab=26.96 E-value=42 Score=34.45 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=35.6
Q ss_pred HHHHHHHhc-CCCCccEEeecCC-hhHHHHHHhhCCCcceeeeccce
Q psy11677 258 REEISDLLS-MEKHIDLIIPRGS-SDLVRSIQQKSQHIPVLGHAEGI 302 (462)
Q Consensus 258 r~~~~~ll~-~~~~iDliIPrG~-~~lv~~v~~~s~~iPvi~~~~G~ 302 (462)
+|.+.+..+ +..|+|+|+-|.. .+.++.+.+.++ ||||--++|.
T Consensus 83 gEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~-vPVINa~~g~ 128 (306)
T PLN02527 83 GETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAE-IPVINAGDGP 128 (306)
T ss_pred CcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCC-CCEEECCCCC
Confidence 566666654 6788999999976 778888999995 9999888774
No 354
>PLN02423 phosphomannomutase
Probab=25.87 E-value=1.7e+02 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=16.9
Q ss_pred CCeEEEEeCCChhHHHHHHcCC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGR 131 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~ 131 (462)
++++++++|+....+.+.|...
T Consensus 39 ~i~fviaTGR~~~~~~~~~~~~ 60 (245)
T PLN02423 39 VVTVGVVGGSDLSKISEQLGKT 60 (245)
T ss_pred CCEEEEECCcCHHHHHHHhccc
Confidence 4899999999877777766543
No 355
>PLN02151 trehalose-phosphatase
Probab=25.46 E-value=2.7e+02 Score=29.40 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCC
Q psy11677 40 MLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGM 119 (462)
Q Consensus 40 ~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~ 119 (462)
.+....++..++++.|.||=+..--.+|+.-. |...+..+...+..+.++.|++|+
T Consensus 89 ~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~------------------------~~~~~~~aL~~La~~~~vaIvSGR 144 (354)
T PLN02151 89 EILHKSEGKQIVMFLDYDGTLSPIVDDPDRAF------------------------MSKKMRNTVRKLAKCFPTAIVSGR 144 (354)
T ss_pred HHHHhhcCCceEEEEecCccCCCCCCCccccc------------------------CCHHHHHHHHHHhcCCCEEEEECC
Confidence 34555677889999999997652111233211 122333444444456799999999
Q ss_pred ChhHHHHHHc
Q psy11677 120 QKEAIKQIVA 129 (462)
Q Consensus 120 ~~~~L~~~l~ 129 (462)
....+.+++.
T Consensus 145 ~~~~l~~~~~ 154 (354)
T PLN02151 145 CREKVSSFVK 154 (354)
T ss_pred CHHHHHHHcC
Confidence 9998988875
No 356
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=25.44 E-value=1.4e+02 Score=36.77 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHH
Q psy11677 362 LGSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSK 409 (462)
Q Consensus 362 ~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~ 409 (462)
.-...+..|+.|...-+.++.++|.++|+++|+.|+++++++...=..
T Consensus 683 dv~~Av~aA~~A~~~W~~~p~~eRa~iL~r~Adlle~~~~eL~~l~~~ 730 (1318)
T PRK11809 683 EVEQALESAVNAAPIWFATPPAERAAILERAADLMEAQMQTLMGLLVR 730 (1318)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 344556678888888999999999999999999999999998865433
No 357
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.31 E-value=4.5e+02 Score=28.26 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhchHHHHHhcHHHHHHH
Q psy11677 385 RAKAIYNLADLLISKQADLLDANSKDLSDA 414 (462)
Q Consensus 385 rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a 414 (462)
+.+-|..+...|.......+..+...++..
T Consensus 305 ~~qrLd~L~~RL~~a~~~~L~~k~~rL~~L 334 (432)
T TIGR00237 305 QQLQFEKLEKRKQAALNKQLERTRQKKTRL 334 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666543
No 358
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=24.61 E-value=74 Score=34.15 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhchHHHH
Q psy11677 378 QGLNPEDRAKAIYNLADLLISKQADLL 404 (462)
Q Consensus 378 ~~ls~~~rn~aL~~iA~~L~~~~~~Il 404 (462)
+.++.++|.++|+++++.|+++++++.
T Consensus 35 ~~~~~~~R~~~L~~~a~~l~~~~~ela 61 (451)
T cd07146 35 STLTRYQRSAILNKAAALLEARREEFA 61 (451)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999887764
No 359
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=24.41 E-value=8.7e+02 Score=26.92 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=88.3
Q ss_pred CCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC----CCchhHHHHHHhh
Q psy11677 268 EKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL----NPEDRAKAIYNLA 343 (462)
Q Consensus 268 ~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~----~~~~~~~~~~~~~ 343 (462)
.+..|+||-|||.. ..++++- .|||+.-... .-|+=.|+..+.+-+. +.++ |..+-+..++.++
T Consensus 52 ~~~~dviIsrG~ta--~~i~~~~-~iPVv~i~~s--------~~Dil~al~~a~~~~~-~ia~vg~~~~~~~~~~~~~ll 119 (526)
T TIGR02329 52 AERCDVVVAGGSNG--AYLKSRL-SLPVIVIKPT--------GFDVMQALARARRIAS-SIGVVTHQDTPPALRRFQAAF 119 (526)
T ss_pred hCCCcEEEECchHH--HHHHHhC-CCCEEEecCC--------hhhHHHHHHHHHhcCC-cEEEEecCcccHHHHHHHHHh
Confidence 33469999999975 3445555 4999864332 2477778777765432 2233 4556677777777
Q ss_pred hcccc------cccChhhHHHHHHhHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 344 DQGEM------DVSGLPCLLLFIRLGSL-------FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 344 ~~~~~------~~~~~~~~~~~~~~~~~-------~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.-.+. ......++.++.+.|.. ....|++..-.=-.+++. ..+..++.+++.-..-.-...++ .
T Consensus 120 ~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~~~~~~A~~~gl~~ili~s~--esi~~a~~~A~~~~~~~~~~~~~-~ 196 (526)
T TIGR02329 120 NLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGLITDLAEQAGLHGVFLYSA--DSVRQAFDDALDVARATRLRQAA-T 196 (526)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHCCCCEEECChHHHHHHHHcCCceEEEecH--HHHHHHHHHHHHHHHHHHHHHHh-H
Confidence 66554 44556777777776542 233344443331122221 34444444444321111001111 1
Q ss_pred HHHHHHCCCCh-hhhhhcCCCHHHHHHHHHHHHHHHhCCCCCc
Q psy11677 411 LSDATKNGVAK-PLLSRLSLTPSKLKSLSTGLKQIAESSHTNV 452 (462)
Q Consensus 411 l~~a~~~gl~~-~l~dRL~L~~~ri~~m~~~l~~ia~l~dDPv 452 (462)
+..+...++.. .-++.+-=....+..+.+-++++|..+ -||
T Consensus 197 ~~~~~~~~~~~~~~f~~iiG~S~~m~~~~~~i~~~A~~~-~pV 238 (526)
T TIGR02329 197 LRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSD-ATV 238 (526)
T ss_pred HHHHhhhhhccccchhheeeCCHHHHHHHHHHHHHhCCC-CcE
Confidence 11111112111 112233334568888999999988887 575
No 360
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.77 E-value=1.7e+02 Score=28.43 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=36.8
Q ss_pred EecCcccccCCCCCCCCcccc--cccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeE
Q psy11677 53 MSDVNGIYTKAPWEEGAKMIW--TYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSV 113 (462)
Q Consensus 53 LTDVdGVY~~dP~~p~AklI~--~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v 113 (462)
.+||+++.+-+|. ++.+- .+++.++.+. -..+|..+...|+||..++++|-+|
T Consensus 33 ~~nv~~Ll~l~~~---~~t~~rfSlnp~~Ii~~-----~E~~T~sl~~Rl~Aa~k~a~aGy~V 87 (199)
T TIGR00620 33 FHHVDHLLDAKHN---GKTRFRFSINADYVIKN-----FEPGTSPLDKRIEAAVKVAKAGYPL 87 (199)
T ss_pred ccchhhHhcCCCC---CCEEEEEEeCHHHHHHH-----hcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 4589999887653 34444 4455555442 2357888999999999999998643
No 361
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=23.66 E-value=62 Score=33.22 Aligned_cols=43 Identities=26% Similarity=0.480 Sum_probs=34.1
Q ss_pred HHHHHHHhc-CCCC-ccEEeec-CChhHHHHHHhhCCCcceeeeccc
Q psy11677 258 REEISDLLS-MEKH-IDLIIPR-GSSDLVRSIQQKSQHIPVLGHAEG 301 (462)
Q Consensus 258 r~~~~~ll~-~~~~-iDliIPr-G~~~lv~~v~~~s~~iPvi~~~~G 301 (462)
.|.+.+-.+ +..| +|+|+.| .+.+.++.+.+.++ ||||--++|
T Consensus 87 gEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~-vPVINa~~g 132 (305)
T PRK00856 87 GETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSD-VPVINAGDG 132 (305)
T ss_pred CcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCC-CCEEECCCC
Confidence 566666554 5778 9999999 56678888888885 999988776
No 362
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=23.40 E-value=60 Score=33.40 Aligned_cols=38 Identities=21% Similarity=0.452 Sum_probs=29.3
Q ss_pred HHHhcCCCCccEEeecCCh-hHHHHHHhhCCCcceeeeccce
Q psy11677 262 SDLLSMEKHIDLIIPRGSS-DLVRSIQQKSQHIPVLGHAEGI 302 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~-~lv~~v~~~s~~iPvi~~~~G~ 302 (462)
...|. .|+|+|+.|... +.++...+.++ ||||--++|.
T Consensus 91 ~~vls--~~~D~iv~R~~~~~~~~~~a~~~~-vPVINag~~~ 129 (311)
T PRK14804 91 ARYLS--RNVSVIMARLKKHEDLLVMKNGSQ-VPVINGCDNM 129 (311)
T ss_pred HHHHH--hcCCEEEEeCCChHHHHHHHHHCC-CCEEECCCCC
Confidence 44444 499999999765 57777888885 9999888874
No 363
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=22.98 E-value=1.9e+02 Score=28.71 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=18.9
Q ss_pred cCCeEEEEeCCChhHHHHHHcC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAG 130 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g 130 (462)
.|+.++|++|+....+.+++..
T Consensus 52 ~g~~v~i~SGR~~~~~~~~~~~ 73 (266)
T PRK10187 52 NDGALALISGRSMVELDALAKP 73 (266)
T ss_pred CCCcEEEEeCCCHHHHHHhcCc
Confidence 5899999999999988887753
No 364
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=22.92 E-value=1.2e+02 Score=29.93 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=54.2
Q ss_pred CCCceeeEEEEeCCCCcccccc-------cccccchHHHHHhhcCCC--CeEEeec--CHHHHHHHhcCCCCccEEeecC
Q psy11677 210 GTPVEVLAEIWKNETLNTTVPK-------KHAKTSQCKYFTKMLPRY--PLHSQVS--TREEISDLLSMEKHIDLIIPRG 278 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv~~~-------~ea~~sn~~~l~~al~~~--~~v~~v~--~r~~~~~ll~~~~~iDliIPrG 278 (462)
.+.+||+|+..+.- +..+.. .+...+- +..++.+++. |.|-++. ..+.-.++.+.-..||+|| |
T Consensus 127 g~kIgviG~~~~~~--~~~~~~~~~~~~~~d~~~~~-~~~v~~~~~~~~D~iVvl~H~g~~~d~~la~~~~~iD~Il--g 201 (257)
T cd07406 127 GVKIGLLGLVEEEW--LETLTIDPEYVRYRDYVETA-RELVDELREQGADLIIALTHMRLPNDKRLAREVPEIDLIL--G 201 (257)
T ss_pred CeEEEEEEEecccc--cccccCCCCcceEcCHHHHH-HHHHHHHHhCCCCEEEEEeccCchhhHHHHHhCCCCceEE--e
Confidence 67899999997643 321111 2222222 3333344433 8888887 3333345665556799998 6
Q ss_pred ChhHHHHHHhhCCCcceeeec-----cceeEEEEccC
Q psy11677 279 SSDLVRSIQQKSQHIPVLGHA-----EGICHVYVDKD 310 (462)
Q Consensus 279 ~~~lv~~v~~~s~~iPvi~~~-----~G~ch~yvd~~ 310 (462)
|..=........ +.||+..| -|...+.+|.+
T Consensus 202 GH~H~~~~~~~~-~t~vv~~g~~g~~vg~l~l~~~~~ 237 (257)
T cd07406 202 GHDHEYILVQVG-GTPIVKSGSDFRTVYIITLTYDTK 237 (257)
T ss_pred cccceeEeeeEC-CEEEEeCCcCcceEEEEEEEEECC
Confidence 654333322222 57888766 56777788865
No 365
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=22.52 E-value=5.6e+02 Score=25.65 Aligned_cols=90 Identities=22% Similarity=0.249 Sum_probs=64.8
Q ss_pred HHhHHHHHHHHhcCCcc---ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCC
Q psy11677 14 LTNFNELFRSIFQKLIS---IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90 (462)
Q Consensus 14 ~~~~~e~~~~~~~~ei~---~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~ 90 (462)
...+.+.++.+-..+|+ |.|-|.-....|..+|||.+=+-| |=|..... .+. ...|+..+
T Consensus 109 ~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhT---G~YA~a~~--~~~-----~~~el~~i------- 171 (237)
T TIGR00559 109 KDKLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHT---GPYANAYN--KKE-----MAEELQRI------- 171 (237)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEec---hhhhcCCC--chh-----HHHHHHHH-------
Confidence 45677888888788886 789999999999999999999988 66753210 000 01122222
Q ss_pred CCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHc
Q psy11677 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVA 129 (462)
Q Consensus 91 ~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~ 129 (462)
..+|..|.+.|+.|.-..|....++..+..
T Consensus 172 ---------~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~ 201 (237)
T TIGR00559 172 ---------VKASVHAHSLGLKVNAGHGLNYHNVKYFAE 201 (237)
T ss_pred ---------HHHHHHHHHcCCEEecCCCCCHHhHHHHHh
Confidence 246778888999999999999888876654
No 366
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=22.41 E-value=1.2e+02 Score=30.78 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=35.2
Q ss_pred HHHhcCCCCccEEeecCCh---hHHHHHHhhCCCcceeeec---------cceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 262 SDLLSMEKHIDLIIPRGSS---DLVRSIQQKSQHIPVLGHA---------EGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~---~lv~~v~~~s~~iPvi~~~---------~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
..||+. .-.|.|=.-||. .+|+++.+. +|||++|- .|. |--.--+.+.|.+++.++|.
T Consensus 101 ~rl~ke-~GadaVKlEGg~~~~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GG---yr~qGk~~~~a~~l~~~A~a 170 (261)
T PF02548_consen 101 GRLMKE-AGADAVKLEGGAEIAETIKALVDA--GIPVMGHIGLTPQSVHQLGG---YRVQGKTAEEAEKLLEDAKA 170 (261)
T ss_dssp HHHHHT-TT-SEEEEEBSGGGHHHHHHHHHT--T--EEEEEES-GGGHHHHTS---S--CSTSHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCCEEEeccchhHHHHHHHHHHC--CCcEEEEecCchhheeccCC---ceEEecCHHHHHHHHHHHHH
Confidence 455552 236777788885 578888887 89999985 221 22233467778888877764
No 367
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=21.83 E-value=4.9e+02 Score=31.14 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=48.7
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH--
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD-- 108 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~-- 108 (462)
+.........+.....+...+|+.|-||-+...-.+|+.. ...+.. +. .. +.+.+..+...+.
T Consensus 573 ~~~~l~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~-~~~~~~-----~~-----a~----p~p~l~~~L~~L~~d 637 (934)
T PLN03064 573 VPPQLPPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRR-GDQIKE-----ME-----LR----LHPELKEPLRALCSD 637 (934)
T ss_pred cCCCCCHHHHHHHHHhccceEEEEecCceeccCCCCcccc-cccccc-----cc-----cC----CCHHHHHHHHHHHhC
Confidence 3333344555666677888999999999876322234311 111110 00 00 1122333333222
Q ss_pred cCCeEEEEeCCChhHHHHHHcCC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGR 131 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~ 131 (462)
-+..|+|+||+....|.+.|..-
T Consensus 638 p~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 638 PKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred CCCeEEEEeCCCHHHHHHHhCCC
Confidence 35689999999999999998654
No 368
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=21.68 E-value=6e+02 Score=25.39 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=65.3
Q ss_pred HHHhHHHHHHHHhcCCcc---ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCC
Q psy11677 13 FLTNFNELFRSIFQKLIS---IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKS 89 (462)
Q Consensus 13 ~~~~~~e~~~~~~~~ei~---~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s 89 (462)
....+.+.++.+-..+|+ |.|-|.-....|..+|||.+=+-| |=|-.-.. . .-...|+..+
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhT---G~Ya~a~~--~-----~~~~~el~~i------ 171 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHT---GPYANAYD--K-----AEREAELERI------ 171 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEec---hhhhcCCC--c-----hhHHHHHHHH------
Confidence 346677888888888886 789999999999999999999988 66753110 0 0001122222
Q ss_pred CCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHc
Q psy11677 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVA 129 (462)
Q Consensus 90 ~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~ 129 (462)
..+|..|.+.|+.|.-..|.+.+++..+..
T Consensus 172 ----------~~aa~~a~~~GL~VnAGHgLny~Nv~~i~~ 201 (234)
T cd00003 172 ----------AKAAKLARELGLGVNAGHGLNYENVKPIAK 201 (234)
T ss_pred ----------HHHHHHHHHcCCEEecCCCCCHHHHHHHHh
Confidence 347778888999999999999888766654
No 369
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=21.59 E-value=1.8e+02 Score=23.57 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11677 364 SLFISG--TRSGSRVLQGLNPEDRAKAIYNLAD 394 (462)
Q Consensus 364 ~~~~~~--Ar~As~~L~~ls~~~rn~aL~~iA~ 394 (462)
+.++.. ...||..|..++.+.|.+++..||.
T Consensus 18 AliLs~L~~~~AA~VL~~lp~e~r~~v~~Ria~ 50 (79)
T PF14841_consen 18 ALILSYLPPEQAAEVLSQLPEELRAEVVRRIAR 50 (79)
T ss_dssp HHHHHTS-HHHHHHHHHTS-HHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHc
Confidence 344443 7889999999999999999999874
No 370
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=21.57 E-value=3.4e+02 Score=27.14 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=61.2
Q ss_pred HHHhHHHHHHHHhcCCcc---ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh-hhhcCC
Q psy11677 13 FLTNFNELFRSIFQKLIS---IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT-VQFGQK 88 (462)
Q Consensus 13 ~~~~~~e~~~~~~~~ei~---~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~-l~~~~~ 88 (462)
....+.+.++.+-..+|+ |.|-|.-....|..+|||.+=+-| |-|-.- .. ...+..+ +.
T Consensus 109 ~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhT---G~yA~a--------~~--~~~~~~~ell---- 171 (239)
T PF03740_consen 109 NRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHT---GPYANA--------FD--DAEEAEEELL---- 171 (239)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEET---HHHHHH--------SS--HHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEeh---hHhhhh--------cC--CHHHHHHHHH----
Confidence 357788888888888886 689999999999999999999988 666421 11 1111111 10
Q ss_pred CCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCC
Q psy11677 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR 131 (462)
Q Consensus 89 s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~ 131 (462)
..-..+|..|.+.|+.|.-..|.+..++..+..-.
T Consensus 172 --------~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~ 206 (239)
T PF03740_consen 172 --------ERLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIP 206 (239)
T ss_dssp --------HHHHHHHHHHHHTT-EEEEETT--TTTHHHHHTST
T ss_pred --------HHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCC
Confidence 11234677888999999999999998888776644
No 371
>PLN03017 trehalose-phosphatase
Probab=21.52 E-value=2.9e+02 Score=29.28 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeC
Q psy11677 39 AMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNG 118 (462)
Q Consensus 39 a~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG 118 (462)
..++...+...+++++|.||=+..--.+|+... |..++..+...+..|+++.|++|
T Consensus 101 ~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~------------------------i~~~~~~aL~~La~~~~vaIvSG 156 (366)
T PLN03017 101 EQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAF------------------------MSSKMRRTVKKLAKCFPTAIVTG 156 (366)
T ss_pred HHHHHHhcCCCeEEEEecCCcCcCCcCCccccc------------------------CCHHHHHHHHHHhcCCcEEEEeC
Confidence 345666677889999999996651000122211 11223333443446789999999
Q ss_pred CChhHHHHHHc
Q psy11677 119 MQKEAIKQIVA 129 (462)
Q Consensus 119 ~~~~~L~~~l~ 129 (462)
+....+.+++.
T Consensus 157 R~~~~l~~~~~ 167 (366)
T PLN03017 157 RCIDKVYNFVK 167 (366)
T ss_pred CCHHHHHHhhc
Confidence 99988887753
No 372
>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast.; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.
Probab=21.38 E-value=1.9e+02 Score=25.67 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=38.3
Q ss_pred ccchhhhhHHHhHHHHHHHHhcCCccc-----cChHHHHHHHHHHcCCCeEEEEec
Q psy11677 5 TTRLCEQHFLTNFNELFRSIFQKLISI-----KDNDSLAAMLAAEIQADLLILMSD 55 (462)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~~~~~ei~~-----gdnD~lAa~lA~~l~Ad~LIiLTD 55 (462)
+|+.+++.++.-|.+.++.+....-.+ +..|.-|-..|..+|....+.+.|
T Consensus 34 inE~~dp~v~~Dl~~~l~~lvP~~~~y~H~~~~~~n~~aHlks~l~G~S~~vpv~~ 89 (118)
T PF01894_consen 34 INENADPDVRRDLLEALERLVPEDDPYRHNEEGPDNAPAHLKSSLIGPSLTVPVHD 89 (118)
T ss_dssp EEESSSHHHHHHHHHHHHHHS-TTST-GGGCTT-STHHHHHHHHHH-SEEEEEEET
T ss_pred EeecCChhHHHhHHHHHHHhCCCCCceEeCCccccCccHHHHHHhcCCeEEEEEEC
Confidence 467889999999999999998444333 346788888899999998887764
No 373
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.16 E-value=2e+02 Score=28.31 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHHcCCeEEEEeCCChhHHHHHHc
Q psy11677 102 SATWALDRGVSVVICNGMQKEAIKQIVA 129 (462)
Q Consensus 102 AA~~a~~~Gv~v~I~sG~~~~~L~~~l~ 129 (462)
+...+.+.|++++|++|+....+..++.
T Consensus 32 ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 32 WLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred HHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 4445667899999999999887766654
No 374
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=20.45 E-value=3e+02 Score=23.43 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHH------HHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 365 LFISGTRSGSRV-LQGLNPEDRA------KAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 365 ~~~~~Ar~As~~-L~~ls~~~rn------~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
.|++.||-|.+. +..||.+++. ..++.+.+.|.+++.-=+.-=++|++-
T Consensus 26 ~F~Dn~rla~qhHF~~LSn~Qq~y~ind~dY~rkiVQ~L~E~rnv~lSr~QEd~AV 81 (101)
T PF11567_consen 26 IFMDNARLAAQHHFSNLSNEQQKYLINDYDYIRKIVQTLDENRNVNLSRMQEDMAV 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHTT-HHHHHHHHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHhchHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 589999988876 8899999886 467888999999988777666666653
No 375
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=20.11 E-value=5.6e+02 Score=29.92 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH--HcCCeEEE
Q psy11677 38 AAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL--DRGVSVVI 115 (462)
Q Consensus 38 Aa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~--~~Gv~v~I 115 (462)
...+...-.|.+.+|+.|-||-......+|. .... .. +.+.+..+...+ .-+..|+|
T Consensus 496 ~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~-~p~~----------------a~----p~~~l~~~L~~L~~d~~~~V~I 554 (797)
T PLN03063 496 QDVIQQYSKSNNRLLILGFYGTLTEPRNSQI-KEMD----------------LG----LHPELKETLKALCSDPKTTVVV 554 (797)
T ss_pred HHHHHHHHhccCeEEEEecCccccCCCCCcc-cccc----------------CC----CCHHHHHHHHHHHcCCCCEEEE
Confidence 3455555678888999999998762111110 0000 00 012223333322 23568999
Q ss_pred EeCCChhHHHHHHcCC
Q psy11677 116 CNGMQKEAIKQIVAGR 131 (462)
Q Consensus 116 ~sG~~~~~L~~~l~g~ 131 (462)
+||+..+.|.+.|..-
T Consensus 555 vSGR~~~~L~~~~~~~ 570 (797)
T PLN03063 555 LSRSGKDILDKNFGEY 570 (797)
T ss_pred EeCCCHHHHHHHhCCC
Confidence 9999999999999653
No 376
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.05 E-value=2.7e+02 Score=28.82 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHHHHcCCeEEEEeCCChhHHHHHHc
Q psy11677 104 TWALDRGVSVVICNGMQKEAIKQIVA 129 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~L~~~l~ 129 (462)
..+.+.|+++++++|+....+..++.
T Consensus 28 ~~Lk~~GI~vVlaTGRt~~ev~~l~~ 53 (302)
T PRK12702 28 AALERRSIPLVLYSLRTRAQLEHLCR 53 (302)
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 34456789999999988877655554
No 377
>PLN02580 trehalose-phosphatase
Probab=20.03 E-value=3.9e+02 Score=28.56 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCC
Q psy11677 41 LAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQ 120 (462)
Q Consensus 41 lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~ 120 (462)
++...+...++++.|.||-+..--.+|+...+ ...+.++...+..-.+|.|++|+.
T Consensus 111 ~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~------------------------s~~~~~aL~~La~~~~VAIVSGR~ 166 (384)
T PLN02580 111 IANFAKGKKIALFLDYDGTLSPIVDDPDRALM------------------------SDAMRSAVKNVAKYFPTAIISGRS 166 (384)
T ss_pred HHHHhhcCCeEEEEecCCccCCCCCCcccccC------------------------CHHHHHHHHHHhhCCCEEEEeCCC
Confidence 55667788899999999977532223433211 122333433333335899999999
Q ss_pred hhHHHHHHcC
Q psy11677 121 KEAIKQIVAG 130 (462)
Q Consensus 121 ~~~L~~~l~g 130 (462)
...+.+++.-
T Consensus 167 ~~~L~~~l~~ 176 (384)
T PLN02580 167 RDKVYELVGL 176 (384)
T ss_pred HHHHHHHhCC
Confidence 9999988853
Done!