RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11677
(462 letters)
>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K)
domain of the bifunctional delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed of
an N-terminal G5K (ProB) and a C-terminal glutamyl 5-
phosphate reductase (G5PR, ProA), the first and second
enzyme catalyzing proline (and, in mammals, ornithine)
biosynthesis. G5K transfers the terminal phosphoryl
group of ATP to the gamma-carboxyl group of glutamate,
and is subject to feedback allosteric inhibition by
proline or ornithine. In plants, proline plays an
important role as an osmoprotectant and, in mammals,
ornithine biosynthesis is crucial for proper ammonia
detoxification, since a G5K mutation has been shown to
cause human hyperammonaemia.
Length = 284
Score = 179 bits (455), Expect = 6e-53
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQF 85
Q +ISIKDNDSLAA LA E++ADLLIL+SDV+G+Y P + AK+I T+ + ++ F
Sbjct: 172 QGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITF 231
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G KS+VGTGGM++KV +A WAL G SVVI NGM + I +I+ G+K+GTFFT
Sbjct: 232 GTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284
Score = 69.8 bits (171), Expect = 2e-13
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
ME V +A WAL G SVVI NGM + I +I+ G+K+GTFFT
Sbjct: 242 MEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284
>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K)
catalyzes glutamate-dependent ATP cleavage; G5K
transfers the terminal phosphoryl group of ATP to the
gamma-carboxyl group of glutamate, in the first and
controlling step of proline (and, in mammals, ornithine)
biosynthesis. G5K is subject to feedback allosteric
inhibition by proline or ornithine. In microorganisms
and plants, proline plays an important role as an
osmoprotectant and, in mammals, ornithine biosynthesis
is crucial for proper ammonia detoxification, since a
G5K mutation has been shown to cause human
hyperammonaemia. Microbial G5K generally consists of two
domains: a catalytic G5K domain and one PUA (pseudo
uridine synthases and archaeosine-specific
transglycosylases) domain, and some lack the PUA domain.
G5K requires free Mg for activity, it is tetrameric, and
it aggregates to higher forms in a proline-dependent
way. G5K lacking the PUA domain remains tetrameric,
active, and proline-inhibitable, but the Mg requirement
and the proline-triggered aggregation are greatly
diminished and abolished, respectively, and more proline
is needed for inhibition. Although plant and animal G5Ks
are part of a bifunctional polypeptide, delta
1-pyrroline-5-carboxylate synthetase (P5CS), composed of
an N-terminal G5K (ProB) and a C-terminal glutamyl 5-
phosphate reductase (G5PR; ProA); bacterial and yeast
G5Ks are monofunctional single-polypeptide enzymes. In
this CD, all three domain architectures are present:
G5K, G5K+PUA, and G5K+G5PR.
Length = 251
Score = 130 bits (330), Expect = 5e-35
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTY---TSEMRDTVQFGQK 88
DND L+A++A + ADLLIL+SDV+G+Y K P E AK+I T E+ G
Sbjct: 143 DNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAG-GSG 201
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
S VGTGGM +K+ +A A + G+ VVI NG + + + I+AG +GT F
Sbjct: 202 SSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251
Score = 49.4 bits (119), Expect = 1e-06
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
+ +A A + G+ VVI NG + + + I+AG +GT F
Sbjct: 213 LKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 120 bits (302), Expect = 4e-29
Identities = 50/108 (46%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MRDTVQFGQKS 89
DNDSLAA+LA E++ADLLIL+SDV G+Y P ++ +K+I T+ E + + FG KS
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKS 225
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
++G GGM +KV +A WA G V+I +G + I ++V G+K+GT F
Sbjct: 226 RLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLF 273
Score = 95.0 bits (236), Expect = 9e-21
Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V++REEI DLL ++ IDL+IPRGS+ LV I+ KS IPVLGHA+GICHVYVDK A +
Sbjct: 461 VTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIK-KSTKIPVLGHADGICHVYVDKSASVD 519
Query: 315 KAIKIAR 321
A +I R
Sbjct: 520 MAKRIVR 526
Score = 81.1 bits (200), Expect = 3e-16
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R SR+LQ L+ E R + ++++AD L + ++L N KD++ A G A L++RLS++
Sbjct: 296 RESSRMLQALSSEQRKEILHDIADALEDNEDEILAENKKDVAAAQGAGYAASLVARLSMS 355
Query: 431 PSKLKSLSTGLKQIAESSHTNVGKFVK 457
PSK+ SL+ L+Q+A +G+ +K
Sbjct: 356 PSKISSLAISLRQLAAMEDP-IGRVLK 381
Score = 44.9 bits (106), Expect = 8e-05
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
M V +A WA G V+I +G + I ++V G+K+GT F
Sbjct: 232 MTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLF 273
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 118 bits (297), Expect = 2e-28
Identities = 52/106 (49%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM-RDTVQFGQKSKV 91
DNDSLAA+LA E++ADLLIL+SDV G+YT P + +K+I TY E +D + FG+KS+V
Sbjct: 176 DNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRV 235
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
G GGM +KV +A A G+ VVI +G + I++++ G ++GT F
Sbjct: 236 GRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLF 281
Score = 94.0 bits (234), Expect = 2e-20
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V++R+EI DLL ++ IDL+IPRGS+ LV I+ S IPVLGHA+GICHVYVDK AD+
Sbjct: 469 VTSRDEIPDLLKLDDVIDLVIPRGSNKLVSQIKA-STKIPVLGHADGICHVYVDKSADMD 527
Query: 315 KAIKIA 320
A +I
Sbjct: 528 MAKRIV 533
Score = 73.6 bits (181), Expect = 6e-14
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R SR LQ L+ E+R K + ++AD L + + + N D++ A + G K L+SRL+L
Sbjct: 304 RESSRKLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLK 363
Query: 431 PSKLKSLSTGLKQIAE 446
P K+ SL+ ++Q+A+
Sbjct: 364 PGKIASLAASIRQLAD 379
Score = 34.3 bits (79), Expect = 0.14
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
M V +A A G+ VVI +G + I++++ G ++GT F
Sbjct: 240 MTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLF 281
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 106 bits (267), Expect = 4e-25
Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
RE + +LL ++ +IDLIIPRG + L+R + + + IPV+ H +G CHVYVD+ AD+ A+
Sbjct: 179 REAVQELLKLDDYIDLIIPRGGAGLIRFVVENA-TIPVIKHGDGNCHVYVDESADLEMAV 237
Query: 318 KIAR 321
+I
Sbjct: 238 RIVV 241
Score = 85.6 bits (213), Expect = 4e-18
Identities = 28/76 (36%), Positives = 53/76 (69%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ SR L L+ E + A+ +AD L + + ++L+AN+KDL+ A + G+++ LL RL LT
Sbjct: 8 KAASRALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLT 67
Query: 431 PSKLKSLSTGLKQIAE 446
P ++++++ GL+Q+A
Sbjct: 68 PERIEAMAEGLRQVAA 83
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 101 bits (255), Expect = 2e-23
Identities = 27/64 (42%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 257 TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKA 316
R + +LL ++ ++D+IIPRG + L+R + + + +PV+ H +GICH+YVD+ AD+ KA
Sbjct: 184 DRAAVGELLKLDGYVDVIIPRGGAGLIRRVVENAT-VPVIEHGDGICHIYVDESADLDKA 242
Query: 317 IKIA 320
+KI
Sbjct: 243 LKIV 246
Score = 74.3 bits (184), Expect = 2e-14
Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ SR L L+ + +A+ +AD L + A++L AN+KDL+ A NG++ +L RL LT
Sbjct: 14 KAASRKLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLT 73
Query: 431 PSKLKSLSTGLKQIAE 446
++++ ++ GL+Q+A
Sbjct: 74 EARIEGIAEGLRQVAA 89
>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
Length = 372
Score = 99.4 bits (249), Expect = 6e-23
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTY---TSEMRDTVQFGQK 88
DND+L+A++A ++ADLLIL++DV+G+YT P + AK+I T E+ G
Sbjct: 152 DNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAG-GAG 210
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S +GTGGM +K+ +A A G+ VVI +G + + + +++AG +GT F
Sbjct: 211 SGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLF 259
Score = 38.1 bits (90), Expect = 0.008
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 170 ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
A G+ VVI +G + + + +++AG +GT F
Sbjct: 228 ATRAGIPVVIASGREPDVLLRLLAGEAVGTLF 259
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
Length = 266
Score = 96.1 bits (240), Expect = 2e-22
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQF--GQKS 89
DND L+A++A ++ADLLI++SD++G+Y K P AK+ T + + G S
Sbjct: 155 DNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGS 214
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
K GTGGM +K+ +A + ++ G+ +V+ NG I + G IGT F
Sbjct: 215 KFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFA 263
Score = 38.3 bits (90), Expect = 0.005
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
+ +A + ++ G+ +V+ NG I + G IGT F
Sbjct: 225 LKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFA 263
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 96.5 bits (241), Expect = 1e-21
Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 254 QVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADI 313
+ + REE+ +LL ++ +IDL+IPRG + L+R + + + +PV+ H G CH+YVD+ AD+
Sbjct: 180 EDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVENAT-VPVIEHGVGNCHIYVDESADL 238
Query: 314 RKAIKIA 320
KA+KI
Sbjct: 239 DKALKII 245
Score = 76.8 bits (190), Expect = 3e-15
Identities = 30/76 (39%), Positives = 58/76 (76%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ SR L L+ E++ +A+ +AD L + +A++L AN+KDL+ A +NG+++ +L RL+LT
Sbjct: 13 KAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLSEAMLDRLALT 72
Query: 431 PSKLKSLSTGLKQIAE 446
PS++++++ GL+Q+A
Sbjct: 73 PSRIEAMADGLRQVAA 88
>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and
metabolism].
Length = 369
Score = 95.4 bits (238), Expect = 1e-21
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMI---WTYTSEMRDTVQFGQK 88
DND+L+A++A + ADLL+L+SD++G+Y P AK+I T E+ G
Sbjct: 150 DNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAG-GSG 208
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S++GTGGM +K+ +A A GV V+I +G + + I + G +GT F
Sbjct: 209 SELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLF 257
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 91.8 bits (228), Expect = 4e-20
Identities = 36/62 (58%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
RE +S+LL ++++IDL+IPRG + LVR I+Q S IPVLGH +GICH+Y+D+ AD+ KAI
Sbjct: 173 RELVSELLDLDEYIDLLIPRGGNGLVRLIKQTST-IPVLGHGDGICHIYLDESADLIKAI 231
Query: 318 KI 319
K+
Sbjct: 232 KV 233
Score = 60.6 bits (147), Expect = 6e-10
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
+ + +L L+ ++ A+ +AD L ++ +L AN+KD++ A +NG+A LL RL LT
Sbjct: 2 KQAANILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLT 61
Query: 431 PSKLKSLSTGLKQIAE 446
+LK ++ G+K + E
Sbjct: 62 EGRLKGIADGVKDVIE 77
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit
the full length of this model, but the ProB-like domain
of delta 1-pyrroline-5-carboxylate synthetase does not
hit the C-terminal 100 residues of this model. The noise
cutoff is set low enough to hit delta
1-pyrroline-5-carboxylate synthetase and other partial
matches to this family [Amino acid biosynthesis,
Glutamate family].
Length = 363
Score = 87.0 bits (216), Expect = 9e-19
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD---TVQF 85
I DND+L+A++A + ADLL+L++DV+G+Y P + E+ D V
Sbjct: 140 IKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAG 199
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S VGTGGM +K+ +A A GV V+I +G + E I + G +GT F
Sbjct: 200 DSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLF 251
Score = 32.3 bits (74), Expect = 0.49
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 166 SATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
+A A GV V+I +G + E I + G +GT F
Sbjct: 216 AADLATRAGVPVIIASGSKPEKIADALEGAPVGTLF 251
>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
Length = 368
Score = 83.5 bits (207), Expect = 2e-17
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIW---TYTSEMRDTVQFGQK 88
DND+L+AM+AA AD LI++SD++G+Y + P AK+I +E+ G
Sbjct: 148 DNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAG-GAG 206
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
S VGTGGM +K+ +A A+ G+ I NG + Q++ G+ GT+FT
Sbjct: 207 SNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFT 256
>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family. This family
includes kinases that phosphorylate a variety of amino
acid substrates, as well as uridylate kinase and
carbamate kinase. This family includes: Aspartokinase
EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate
5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-,
Carbamate kinase EC:2.7.2.2.
Length = 230
Score = 67.8 bits (166), Expect = 6e-13
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 27 KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQ 84
+ +D+LAA+LA + AD LI+++DV+G+YT P + AK+I + E + +
Sbjct: 141 TTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYDEAEELL- 199
Query: 85 FGQKSKVGTGGMDSKVNSATWALDRGV-SVVICN 117
+ TGGM K +A A RG V I N
Sbjct: 200 ---AAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 69.6 bits (170), Expect = 8e-13
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIK 318
E +LLS K IDLI+ G D V + + S HIPV+G G V VD+ AD +A
Sbjct: 171 ELAEELLSHPK-IDLIVATGGRDAVDAAVKHSPHIPVIGFGAGNSPVVVDETADEERASG 229
Query: 319 IARSG 323
Sbjct: 230 SVHDS 234
Score = 43.4 bits (102), Expect = 2e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ R L + E R I +A+ L + L + ++ +A ++ + +
Sbjct: 4 KNAQRTLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIRSLIA-NWIAMMGCS 62
Query: 431 PSKLKSLSTGLKQIAES 447
SKL + I S
Sbjct: 63 ESKLYKNIDTERGITAS 79
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a
fosfomycin biosynthetic gene product, FomA, and similar
proteins found in a wide range of organisms. Together,
the fomA and fomB genes in the fosfomycin biosynthetic
gene cluster of Streptomyces wedmorensis confer
high-level fosfomycin resistance. FomA and FomB proteins
converted fosfomycin to fosfomycin monophosphate and
fosfomycin diphosphate in the presence of ATP and a
magnesium ion, indicating that FomA and FomB catalyzed
phosphorylations of fosfomycin and fosfomycin
monophosphate, respectively. FomA and related sequences
in this CD are members of the Amino Acid Kinase
Superfamily (AAK).
Length = 252
Score = 61.9 bits (151), Expect = 7e-11
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG-- 92
D + LA ++ + +I ++DV+G+Y K P AK+I + + S
Sbjct: 150 DDIVVELAKALKPERVIFLTDVDGVYDKPP--PDAKLIPEIDVGSLEDILAALGSAGTDV 207
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
TGGM K+ RG+ V I NG + E + + + G IGT
Sbjct: 208 TGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGT 250
Score = 29.2 bits (66), Expect = 4.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 172 DRGVSVVICNGMQKEAIKQIVAGRKIGT 199
RG+ V I NG + E + + + G IGT
Sbjct: 223 RRGIEVYIFNGDKPENLYRALLGNFIGT 250
>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function
prediction only].
Length = 252
Score = 60.5 bits (147), Expect = 2e-10
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQ 87
I D + LA E++ D +I ++DV+G+Y + P + A+++ SE+ V G
Sbjct: 144 YEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLL----SEIEGRVALGG 199
Query: 88 KSKVG-TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
TGG+ K+ + G V I NG + E I + + G +GT
Sbjct: 200 SGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGT 248
Score = 30.4 bits (69), Expect = 1.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 173 RGVSVVICNGMQKEAIKQIVAGRKIGT 199
G V I NG + E I + + G +GT
Sbjct: 222 YGKEVYIFNGNKPENIYRALRGENVGT 248
>gnl|CDD|240438 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional.
Length = 264
Score = 58.9 bits (142), Expect = 9e-10
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT---VQFGQKS 89
DND L+A++A +ADLL+++SD++G YT+ P I + E+ + +
Sbjct: 148 DNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNN 207
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAG--RKIGTFF 137
+ TGG+ +K+ +A + L+RG + + +G E + + G +IGT F
Sbjct: 208 RFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLF 257
>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic
domain; present in such enzymes like N-acetylglutamate
kinase (NAGK), carbamate kinase (CK), aspartokinase
(AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK).
The AAK superfamily includes kinases that phosphorylate
a variety of amino acid substrates. These kinases
catalyze the formation of phosphoric anhydrides,
generally with a carboxylate, and use ATP as the source
of the phosphoryl group; are involved in amino acid
biosynthesis. Some of these kinases control the process
via allosteric feed-back inhibition.
Length = 248
Score = 58.6 bits (142), Expect = 1e-09
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMI-WTYTSEMRDTVQFGQKSK 90
+DS AA+LAA ++AD L++++DV+G+YT P + AK++ E +
Sbjct: 151 GSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA----- 205
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
G M K +A A G+ V I N + + GT
Sbjct: 206 ---GAMVLKPKAADPAARAGIPVRIANT-ENPGALALFTPDGGGTLI 248
>gnl|CDD|239771 cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase
(NAGK)-like . Included in this CD are the Escherichia
coli and Pseudomonas aeruginosa type NAGKs which
catalyze the phosphorylation of N-acetyl-L-glutamate
(NAG) by ATP in the second step of arginine biosynthesis
found in bacteria and photosynthetic organisms using
either the acetylated, noncyclic (NC), or
non-acetylated, cyclic (C) route of ornithine
biosynthesis. Also included in this CD is a distinct
group of uncharacterized (UC) bacterial and archeal
NAGKs. Members of this CD belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 256
Score = 57.1 bits (139), Expect = 3e-09
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM-RDTVQFGQKSKVGT 93
D+ A +AA ++A+ LIL++DV G+ + G+ + SE+ + + V +
Sbjct: 160 DTAAGAIAAALKAEKLILLTDVPGVLD----DPGSLI-----SELTPKEAEELIEDGVIS 210
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRK-IGT 135
GGM KV +A AL+ GV V I +G ++ + + IGT
Sbjct: 211 GGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGT 254
>gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
Provisional.
Length = 268
Score = 53.8 bits (130), Expect = 5e-08
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D AA +A ++A+ L+L+SDV G+ P E +I T E + + SK
Sbjct: 169 DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDE--GSLIERITPE-----EAEELSKAA 221
Query: 93 TGGMDSKVNSATWALDRGVS-VVICNGMQKEAIKQIVAGRKIGT 135
GGM KV A A++ GV V+I + + I +AG GT
Sbjct: 222 GGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GT 263
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 50.9 bits (123), Expect = 3e-07
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D+ AA+ A EI AD+L+ ++V+G+Y P + AK T E+ + + KV
Sbjct: 137 DTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLE-----KGLKV- 190
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + + A D + +++ N + +K++V G IGT
Sbjct: 191 ---MDA--TAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGT 228
Score = 30.1 bits (69), Expect = 2.1
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 147 TPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
T EVL + + + M+ + + A D + +++ N + +K++V G IGT
Sbjct: 179 TYDEVLEKGLKV-MDAT--AISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGT 228
>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and
metabolism].
Length = 238
Score = 50.3 bits (121), Expect = 6e-07
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 35 DSLAAMLAAEIQAD-LLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKV 91
D+ AA+ A EI+AD LL + V+G+Y P + AK T T E+ KV
Sbjct: 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLK-----IGLKV 196
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD + + A D G+ +++ N + +K+ + G ++GT
Sbjct: 197 ----MDP--TAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGT 234
Score = 28.7 bits (65), Expect = 5.7
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 147 TPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
T EVL + M+ + + A D G+ +++ N + +K+ + G ++GT
Sbjct: 185 TYDEVL-KIGLKVMDPT--AFSLARDNGIPIIVFNINKPGNLKRALKGEEVGT 234
>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the
microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis. Regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinases of E.
coli (Ec) and Pyrococcus furiosus (Pf) are known to
function as homohexamers, with GTP and UTP being
allosteric effectors. Like other related enzymes
(carbamate kinase, aspartokinase, and N-acetylglutamate
kinase) the E. coli and most bacterial UMPKs have a
conserved, N-terminal, lysine residue proposed to
function in the catalysis of the phosphoryl group
transfer, whereas most archaeal UMPKs appear to lack
this residue and the Pyrococcus furiosus structure has
an additional Mg ion bound to the ATP molecule which is
proposed to function as the catalysis instead. Also
included in this CD are the alpha and beta subunits of
the Mo storage protein (MosA and MosB) characterized as
an alpha4-beta4 octamer containing an ATP-dependent,
polynuclear molybdenum-oxide cluster. These and related
sequences in this CD are members of the Amino Acid
Kinase Superfamily (AAK).
Length = 229
Score = 49.8 bits (120), Expect = 7e-07
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE-GAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A EI AD+L+ ++V+G+Y P + AK D + + + K G
Sbjct: 135 DTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKY--------DRISYDELLKKGL 186
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + T + +++ NG++ + + + G +GT
Sbjct: 187 KVMDAT--ALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGT 226
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 49.9 bits (120), Expect = 1e-06
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ--KSQHIPVLGHAEGICHVYVDKDADIRKA 316
+E+ L +D I GS+ + ++I + PV G V VD+DAD+ A
Sbjct: 160 DEVGAALLSHPRVDKISFTGSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAA 219
Query: 317 IKIARSGS 324
++ A G+
Sbjct: 220 VEGAVFGA 227
Score = 29.5 bits (67), Expect = 3.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
L P +RA + +ADLL ++ +L + +
Sbjct: 13 LPPAERAAILRKIADLLEERREELAALETLE 43
>gnl|CDD|234869 PRK00942, PRK00942, acetylglutamate kinase; Provisional.
Length = 283
Score = 49.3 bits (119), Expect = 2e-06
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D+ A +AA + A+ LIL++DV G+ ++I SE+ + + V T
Sbjct: 184 DTAAGAIAAALGAEKLILLTDVPGVLDDK-----GQLI----SELTASEAEELIEDGVIT 234
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGT 135
GGM KV +A A GV SV I +G A+ ++ IGT
Sbjct: 235 GGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGT 278
>gnl|CDD|239784 cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glutamate kinase -
uncharacterized (NAGK-UC). This domain is similar to
Escherichia coli and Pseudomonas aeruginosa NAGKs which
catalyze the phosphorylation of the gamma-COOH group of
N-acetyl-L-glutamate (NAG) by ATP in the second step of
microbial arginine biosynthesis. These uncharacterized
domain sequences are found in some bacteria (Deinococci
and Chloroflexi) and archea and belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 257
Score = 48.9 bits (117), Expect = 2e-06
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D AA +AA ++A+ LIL++DV G+Y +G + S+ ++
Sbjct: 165 DGDRAAAAIAAALKAERLILLTDVEGLYL-----DGRVIERITVSDAESLLEKAG----- 214
Query: 93 TGGMDSKVNSATWALDRGVS-VVICNGMQKEAIKQIVAG 130
GGM K+ +A A++ GV VVI + I + G
Sbjct: 215 -GGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNG 252
>gnl|CDD|239783 cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase -
cyclic (NAGK-C) catalyzes the phosphorylation of the
gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in
the second step of arginine biosynthesis found in some
bacteria and photosynthetic organisms using the
non-acetylated, cyclic route of ornithine biosynthesis.
In this pathway, glutamate is first N-acetylated and
then phosphorylated by NAGK to give phosphoryl NAG,
which is converted to NAG-ornithine. There are two
variants of this pathway. In one, typified by the
pathway in Thermotoga maritima and Pseudomonas
aeruginosa, the acetyl group is recycled by reversible
transacetylation from acetylornithine to glutamate. The
phosphorylation of NAG by NAGK is feedback inhibited by
arginine. In photosynthetic organisms, NAGK is the
target of the nitrogen-signaling protein PII. Hexameric
formation of NAGK domains appears to be essential to
both arginine inhibition and NAGK-PII complex formation.
NAGK-C are members of the Amino Acid Kinase Superfamily
(AAK).
Length = 279
Score = 48.3 bits (116), Expect = 3e-06
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D+ A +AA ++A+ LIL++DV G+ + SE+ + + +
Sbjct: 180 DTAAGAIAAALKAEKLILLTDVAGVLDDPNDPG------SLISEISLKEAEELIADGIIS 233
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
GGM KV + AL+ GV + I +G
Sbjct: 234 GGMIPKVEACIEALEGGVKAAHIIDG 259
>gnl|CDD|223622 COG0548, ArgB, Acetylglutamate kinase [Amino acid transport and
metabolism].
Length = 265
Score = 47.2 bits (113), Expect = 6e-06
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ A LAA ++A+ LIL++DV G+ +I +E + + + + TG
Sbjct: 165 DTAAGALAAALKAEKLILLTDVPGVLDDKG---DPSLISELDAEEAEEL---IEQGIITG 218
Query: 95 GMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGT 135
GM KV +A AL+ GV V I +G ++ ++ IGT
Sbjct: 219 GMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGT 261
>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase. This protein, also called
UMP kinase, converts UMP to UDP by adding a phosphate
from ATP. It is the first step in pyrimidine
biosynthesis. GTP is an allosteric activator. In a large
fraction of all bacterial genomes, the gene tends to be
located immediately downstream of elongation factor Ts
and upstream of ribosome recycling factor. A related
protein family, believed to be equivalent in function
and found in the archaea and in spirochetes, is
described by a separate model, TIGR02076 [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 232
Score = 46.5 bits (111), Expect = 1e-05
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A EI AD+++ ++V+G+YT P + + AK DT+ + + K
Sbjct: 138 DTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKY--------DTITYNEALKKNL 189
Query: 94 GGMDSKVNSA-TWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD +A A D + +V+ N + A+K+++ G+ IGT
Sbjct: 190 KVMDL---TAFALARDNNLPIVVFNIDKPGALKKVILGKGIGT 229
>gnl|CDD|233118 TIGR00761, argB, acetylglutamate kinase. This model describes
N-acetylglutamate kinases (ArgB) of many prokaryotes and
the N-acetylglutamate kinase domains of multifunctional
proteins from yeasts. This enzyme is the second step in
the "acetylated" ornithine biosynthesis pathway. A
related group of enzymes representing the first step of
the pathway contain a homologous domain and are excluded
from this model [Amino acid biosynthesis, Glutamate
family].
Length = 231
Score = 45.0 bits (107), Expect = 3e-05
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 8 LCEQHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE 67
L + ++ + L + + +++ + D+ A LAA + A+ L+L++DV GI +
Sbjct: 131 LLKAGYIPVISSLALTAEGQALNV-NADTAAGALAAALGAEKLVLLTDVPGILN----GD 185
Query: 68 GAKMIWTYTSEMR-DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVI 115
G +I SE+ D ++ K + GGM KVN+A AL GV V
Sbjct: 186 GQSLI----SEIPLDEIEQLIKQGIIKGGMIPKVNAALEALRGGVRSVH 230
>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the
microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis; regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinase of E.
coli (Ec) is known to function as a homohexamer, with
GTP and UTP being allosteric effectors. Like other
related enzymes (carbamate kinase, aspartokinase, and
N-acetylglutamate kinase) the E. coli and most bacterial
and chloroplast UMPKs (this CD) have a conserved,
N-terminal, lysine residue proposed to function in the
catalysis of the phosphoryl group transfer, whereas most
archaeal UMPKs appear to lack this residue and the
Pyrococcus furiosus structure has an additional Mg ion
bound to the ATP molecule which is proposed to function
as the catalysis instead. Members of this CD belong to
the Amino Acid Kinase Superfamily (AAK).
Length = 231
Score = 42.5 bits (101), Expect = 2e-04
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE-GAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A EI AD+++ + V+G+Y P + AK D + + + G
Sbjct: 137 DTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRY--------DHLTYDEVLSKGL 188
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + T D + +V+ N + + + V G +GT
Sbjct: 189 KVMDA--TAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGT 228
>gnl|CDD|223623 COG0549, ArcC, Carbamate kinase [Amino acid transport and
metabolism].
Length = 312
Score = 41.5 bits (98), Expect = 6e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D +A+LA +I ADLLI+++DV+ +Y + EM + GQ +
Sbjct: 212 DKDLASALLAEQIDADLLIILTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQFAA-- 269
Query: 93 TGGMDSKVNSA 103
G M KV +A
Sbjct: 270 -GSMGPKVEAA 279
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
Length = 307
Score = 41.4 bits (98), Expect = 6e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIY 60
D D AA+LA ++ ADLL++++DV+ +Y
Sbjct: 204 DKDLAAALLAEQLDADLLLILTDVDAVY 231
>gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase.
Length = 309
Score = 40.8 bits (96), Expect = 9e-04
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ A +AA + A+ LIL++DV G+ + G+ + +R + G G
Sbjct: 208 DTAAGEIAAALGAEKLILLTDVAGVLEDKD-DPGSLVKELDIKGVRKLIADG----KIAG 262
Query: 95 GMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFT 138
GM KV +L +GV + I +G + + +I+ GT T
Sbjct: 263 GMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308
>gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase -
noncyclic (NAGK-NC) catalyzes the phosphorylation of the
gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in
the second step of microbial arginine biosynthesis using
the acetylated, noncyclic route of ornithine
biosynthesis. There are two variants of this pathway. In
one, typified by the pathway in Escherichia coli,
glutamate is acetylated by acetyl-CoA and
acetylornithine is deacylated hydrolytically. In this
pathway, feedback inhibition by arginine occurs at the
initial acetylation of glutamate and not at the
phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are
members of the Amino Acid Kinase Superfamily (AAK).
Length = 252
Score = 39.7 bits (93), Expect = 0.002
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ--KSKVG 92
D A +A + ADL +L+SDV+G+ A SE+ + Q + + V
Sbjct: 158 DQAATAIAQLLNADL-VLLSDVSGVLD-------ADK--QLISEL-NAKQAAELIEQGVI 206
Query: 93 TGGMDSKVNSATWA---LDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
T GM KVN+A A L RG+ I + E + ++AG +GT
Sbjct: 207 TDGMIVKVNAALDAAQSLRRGID--IASWQYPEQLTALLAGEPVGT 250
>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf,
the mostly archaeal uridine monophosphate kinase
(uridylate kinase) enzymes that catalyze UMP
phosphorylation and play a key role in pyrimidine
nucleotide biosynthesis; regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinase of
Pyrococcus furiosus (Pf) is known to function as a
homohexamer, with GTP and UTP being allosteric
effectors. Like other related enzymes (carbamate kinase,
aspartokinase, and N-acetylglutamate kinase) the E. coli
and most bacterial UMPKs have a conserved, N-terminal,
lysine residue proposed to function in the catalysis of
the phosphoryl group transfer, whereas most archaeal
UMPKs (this CD) appear to lack this residue and the
Pyrococcus furiosus structure has an additional Mg ion
bound to the ATP molecule which is proposed to function
as the catalysis instead. Members of this CD belong to
the Amino Acid Kinase Superfamily (AAK).
Length = 221
Score = 38.4 bits (90), Expect = 0.004
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D++AA+LA + ADLLI ++V+G+Y+K P + AK + E+ D V KS
Sbjct: 118 DAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV---GKSSWK 174
Query: 93 TGG---MDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G D +A G+ ++ +G E +++ + G +GT
Sbjct: 175 AGSNEPFD--PLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221
>gnl|CDD|239768 cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) catalyzes both the
ATP-phosphorylation of carbamate and carbamoyl phosphate
(CP) utilization with the production of ATP from ADP and
CP. Both CK (this CD) and nonhomologous CP synthetase
synthesize carbamoyl phosphate, an essential precursor
of arginine and pyrimidine bases, in the presence of
ATP, bicarbonate, and ammonia. CK is a homodimer of 33
kDa subunits and is a member of the Amino Acid Kinase
Superfamily (AAK).
Length = 308
Score = 38.6 bits (91), Expect = 0.004
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYT--KAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
D D +A+LA EI ADLL++++DV+ +Y P ++ + + E+ ++ GQ +
Sbjct: 209 DKDLASALLAEEINADLLVILTDVDNVYINFGKPNQKALEQV--TVEELEKYIEEGQFAP 266
Query: 91 VGTGGMDSKVNSA-TWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
G M KV +A + G +I + E + + G+ GT
Sbjct: 267 ---GSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGKA-GT 305
>gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid
kinase-like proteins found mainly in archaea and a few
bacteria. Sequences in this CD are members of the Amino
Acid Kinase (AAK) superfamily.
Length = 203
Score = 37.7 bits (88), Expect = 0.006
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTK 62
DS+AA LA ++ A L++++DV+GIY K
Sbjct: 117 DSIAAWLAKKLGAKRLVIVTDVDGIYEK 144
>gnl|CDD|133644 CHL00202, argB, acetylglutamate kinase; Provisional.
Length = 284
Score = 37.8 bits (88), Expect = 0.007
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D +A +AA++ A+ LIL++D GI + + + E R+ + + +G
Sbjct: 183 DVVAGEIAAKLNAEKLILLTDTPGILADIN-DPNSLISTLNIKEARNLA----STGIISG 237
Query: 95 GMDSKVNSATWALDRGVSVV-ICNGMQKEA-IKQIVAGRKIGTFF 137
GM KVN AL +GV I +G +K A + +I+ + IG+
Sbjct: 238 GMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSML 282
>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative. This family
consists of the archaeal and spirochete proteins most
closely related to bacterial uridylate kinases
(TIGR02075), an enzyme involved in pyrimidine
biosynthesis. Members are likely, but not known, to be
functionally equivalent to their bacterial counterparts.
However, substantial sequence differences suggest that
regulatory mechanisms may be different; the bacterial
form is allosterically regulated by GTP [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 221
Score = 37.7 bits (88), Expect = 0.008
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D++AA+LA +ADLLI ++V+G+Y K P + AK T E+ + V S V
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIV---GSSSVK 174
Query: 93 TGG---MDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTF 136
G +D +A + ++ NG E +++++ G +GT
Sbjct: 175 AGSNEVVD--PLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTI 219
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 37.1 bits (87), Expect = 0.018
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
I V D+ A+ AR+ + P +RA + AD
Sbjct: 20 IATVPAATAEDVDAAVAAARAAFKAWAKTPPSERAAILLKAAD 62
>gnl|CDD|233112 TIGR00746, arcC, carbamate kinase. In most species, carbamate
kinase works in arginine catabolism and consumes
carbamoyl phosphate to convert ADP into ATP. In the
pathway in Pyrococcus furiosus, the enzyme acts instead
to generate carbamoyl phosphate.The seed alignment for
this model includes experimentally confirmed examples
from a set of phylogenetically distinct species. In a
neighbor-joining tree constructed from an alignment of
candidate carbamate kinases and several acetylglutamate
kinases, the latter group forms a clear outgroup which
roots the tree of carbamate kinase-like proteins. This
analysis suggests that in E. coli, the ArcC paralog YqeA
may be a second isozyme, while the paralog YahI branches
as an outlier and is less likely to be an authentic
carbamate kinase. The homolog from Mycoplasma pneumoniae
likewise branches outside the set containing known
carbamate kinases and also scores below the trusted
cutoff [Energy metabolism, Amino acids and amines].
Length = 309
Score = 36.3 bits (84), Expect = 0.027
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D + +LA E+ AD+L++++DV+ +Y + K+ E+ D + G +
Sbjct: 209 DKDLASELLAEEVNADILMILTDVDAVYINYGKPDEKKLREVTVEELEDYEKAGHFAA-- 266
Query: 93 TGGMDSKVNSA 103
G M KV +A
Sbjct: 267 -GSMGPKVEAA 276
>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
This model describes a subclass of aspartate kinases.
These are mostly Lys-sensitive and not fused to
homoserine dehydrogenase, unlike some Thr-sensitive and
Met-sensitive forms. Homoserine dehydrogenase is part of
Thr and Met but not Lys biosynthetic pathways. Aspartate
kinase catalyzes a first step in the biosynthesis from
Asp of Lys (and its precursor diaminopimelate), Met, and
Thr. In E. coli, a distinct isozyme is inhibited by each
of the three amino acid products. The Met-sensitive (I)
and Thr-sensitive (II) forms are bifunctional enzymes
fused to homoserine dehydrogenases and form
homotetramers, while the Lys-sensitive form (III) is a
monofunctional homodimer. The Lys-sensitive enzyme of
Bacillus subtilis resembles the E. coli form but is an
alpha 2/beta 2 heterotetramer, where the beta subunit is
translated from an in-phase alternative initiator at
Met-246. The protein slr0657 from Synechocystis PCC6803
is extended by a duplication of the C-terminal region
corresponding to the beta chain. Incorporation of a
second copy of the C-terminal domain may be quite common
in this subgroup of aspartokinases [Amino acid
biosynthesis, Aspartate family].
Length = 401
Score = 36.2 bits (84), Expect = 0.031
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP-WEEGAKMI--WTYTSEMRDTVQFGQK 88
D AA+LAA ++AD + + +DV G+YT P E AK I +Y E + FG K
Sbjct: 155 DYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYE-EALELATFGAK 210
>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK),
Aspartokinase (AK); this CD includes the N-terminal
catalytic domain of aspartokinase
(4-L-aspartate-4-phosphotransferase;). AK is the first
enzyme in the biosynthetic pathway of the aspartate
family of amino acids (lysine, threonine, methionine,
and isoleucine) and the bacterial cell wall component,
meso-diaminopimelate. It also catalyzes the conversion
of aspartate and ATP to aspartylphosphate and ADP. One
mechanism for the regulation of this pathway is by the
production of several isoenzymes of aspartokinase with
different repressors and allosteric inhibitors. Pairs of
ACT domains are proposed to specifically bind amino
acids leading to allosteric regulation of the enzyme. In
Escherichia coli, three different aspartokinase
isoenzymes are regulated specifically by lysine,
methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII
(MetL) are bifunctional enzymes that consist of an
N-terminal AK and a C-terminal homoserine dehydrogenase
(HSDH). ThrA and MetL are involved in threonine and
methionine biosynthesis, respectively. The third
isoenzyme, AKIII (LysC), is monofunctional and is
involved in lysine synthesis. The three Bacillus
subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII
(YclM), are feedback-inhibited by meso-diaminopimelate,
lysine, and lysine plus threonine, respectively. The E.
coli lysine-sensitive AK is described as a homodimer,
whereas, the B. subtilis lysine-sensitive AK is
described as a heterodimeric complex of alpha- and beta-
subunits that are formed from two in-frame overlapping
genes. A single AK enzyme type has been described in
Pseudomonas, Amycolatopsis, and Corynebacterium. The
fungal aspartate pathway is regulated at the AK step,
with L-Thr being an allosteric inhibitor of the
Saccharomyces cerevisiae AK (Hom3). At least two
distinct AK isoenzymes can occur in higher plants, one
is a monofunctional lysine-sensitive isoenzyme, which is
involved in the overall regulation of the pathway and
can be synergistically inhibited by
S-adenosylmethionine. The other isoenzyme is a
bifunctional, threonine-sensitive AK-HSDH protein. Also
included in this CD is the catalytic domain of the
Methylomicrobium alcaliphilum ectoine AK, the first
enzyme of the ectoine biosynthetic pathway, found in
this bacterium, and several other
halophilic/halotolerant bacteria.
Length = 227
Score = 35.5 bits (83), Expect = 0.036
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYT 61
AA LAA + AD + + +DV+GIYT
Sbjct: 142 AAALAAALGADEVEIWTDVDGIYT 165
>gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to
aspartokinases, uridylate kinases [General function
prediction only].
Length = 212
Score = 35.2 bits (81), Expect = 0.038
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
DS++ +AA+ A ++ +DV+GIY + P
Sbjct: 119 DSISVWIAAKAGATEVVKATDVDGIYEEDP 148
>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and
metabolism].
Length = 447
Score = 36.1 bits (84), Expect = 0.040
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYT 61
AA LAA + AD + + +DV+G+YT
Sbjct: 203 AAALAAALGADEVEIWTDVDGVYT 226
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 35.1 bits (81), Expect = 0.050
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A E++AD+LI + V+GIY K P + AK I D + F + K+G
Sbjct: 135 DTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKI--------DHLTFSEAIKMGL 186
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD++ S G+++++ N + + + + G +GT
Sbjct: 187 KVMDTEAFSICKKY--GITILVINFFEPGNLLKALKGENVGT 226
>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional.
Length = 249
Score = 34.2 bits (78), Expect = 0.11
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D+ A++ A EI AD L+ + VNG+Y K P + Y+ R D V F +
Sbjct: 153 DTTASLRAVEIGADALLKATTVNGVYDKDPNK--------YSDAKRFDKVTFSEVVSKEL 204
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
MD + + T D G+ + + + Q A+ V K GT+ T
Sbjct: 205 NVMD--LGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT 247
>gnl|CDD|237071 PRK12353, PRK12353, putative amino acid kinase; Reviewed.
Length = 314
Score = 33.6 bits (78), Expect = 0.17
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIY 60
D D +A LA + ADLLI+++ V+ +Y
Sbjct: 213 DKDFASAKLAELVDADLLIILTAVDKVY 240
>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase. Aspartate kinase
catalyzes a first step in the biosynthesis from Asp of
Lys (and its precursor diaminopimelate), Met, and Thr.
In E. coli, a distinct isozyme is inhibited by each of
the three amino acid products. The Met-sensitive (I) and
Thr-sensitive (II) forms are bifunctional enzymes fused
to homoserine dehydrogenases and form homotetramers,
while the Lys-sensitive form (III) is a monofunctional
homodimer.The Lys-sensitive enzyme of Bacillus subtilis
resembles the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. This
may be a feature of a number of closely related forms,
including a paralog from B. subtilis [Amino acid
biosynthesis, Aspartate family].
Length = 441
Score = 33.9 bits (78), Expect = 0.18
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP-WEEGAKMIWTYT-SEMRDTVQFGQK 88
D AA+LAA ++AD + +DV+GIYT P A+ I + EM + FG K
Sbjct: 194 DYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAK 249
>gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed.
Length = 313
Score = 33.4 bits (77), Expect = 0.20
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYT 61
D D + +LA E+ AD+ I+++DV +Y
Sbjct: 213 DKDLASELLAEELNADIFIILTDVEKVYL 241
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 33.3 bits (77), Expect = 0.26
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 300 EGICHVYVDKDADIRKAIKIAR----SGSRVLQGLNPEDRAKAIYNLAD 344
E IC V + D+ A+K AR +G + ++P +R + + LAD
Sbjct: 30 EVICQVAEADEEDVDAAVKAARAAFETGWW--RKMDPRERGRLLNKLAD 76
>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated.
Length = 341
Score = 32.7 bits (75), Expect = 0.42
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D A L + A +++MSDV GIYT P
Sbjct: 192 DYSAVALGVLLNAKAVLIMSDVEGIYTADP 221
>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase
Superfamily (AAK), AK-DapG-like; this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
diaminopimelate-sensitive aspartokinase isoenzyme AKI
(DapG), a monofunctional enzymes found in Bacilli
(Bacillus subtilis 168), Clostridia, and Actinobacteria
bacterial species, as well as, the catalytic AK domain
of the lysine-sensitive aspartokinase isoenzyme AKII of
Bacillus subtilis 168, the lysine plus
threonine-sensitive aspartokinase of Corynebacterium
glutamicum, and related isoenzymes. In Bacillus
subtilis, the regulation of the diaminopimelate-lysine
biosynthetic pathway involves dual control by
diaminopimelate and lysine, effected through separate
diaminopimelate- and lysine-sensitive aspartokinase
isoenzymes. The role of the AKI isoenzyme is most likely
to provide a constant level of aspartyl-beta-phosphate
for the biosynthesis of diaminopimelate for
peptidoglycan synthesis and dipicolinate during
sporulation. The B. subtilis 168 AKII is induced by
methionine, and repressed and inhibited by lysine. In
Corynebacterium glutamicum and other various
Gram-positive bacteria, the DAP-lysine pathway is
feedback regulated by the concerted action of lysine and
threonine. Also included in this CD are the
aspartokinases of the extreme thermophile, Thermus
thermophilus HB27, the Gram-negative obligate
methylotroph, Methylophilus methylotrophus AS1, and
those single aspartokinase isoenzyme types found in
Pseudomonas, C. glutamicum, and Amycolatopsis
lactamdurans. The B. subtilis AKI is tetrameric
consisting of two alpha and two beta subunits; the alpha
(43 kD) and beta (17 kD) subunit formed by two in-phase
overlapping genes. The alpha subunit contains the AK
catalytic domain and two ACT domains. The beta subunit
contains two ACT domains. The B. subtilis 168 AKII
aspartokinase is also described as tetrameric consisting
of two alpha and two beta subunits. Some archeal
aspartokinases in this group lack recognizable ACT
domains.
Length = 239
Score = 32.1 bits (74), Expect = 0.52
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D+ A LAA ++AD + +DV+G+YT P
Sbjct: 152 DTTAVALAAALKADRCEIYTDVDGVYTADP 181
>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase
Superfamily (AAK), AKii; this CD includes the N-terminal
catalytic aspartokinase (AK) domain of the
lysine-sensitive aspartokinase isoenzyme AKII of
Bacillus subtilis 168, and the lysine plus
threonine-sensitive aspartokinase of Corynebacterium
glutamicum, and related sequences. In B. subtilis 168,
the regulation of the diaminopimelate (Dap)-lysine
biosynthetic pathway involves dual control by Dap and
lysine, effected through separate Dap- and
lysine-sensitive aspartokinase isoenzymes. The B.
subtilis 168 AKII is induced by methionine, and
repressed and inhibited by lysine. Although
Corynebacterium glutamicum is known to contain a single
aspartokinase isoenzyme type, both the succinylase and
dehydrogenase variant pathways of DAP-lysine synthesis
operate simultaneously in this organism. In this
organism and other various Gram-positive bacteria, the
DAP-lysine pathway is feedback regulated by the
concerted action of lysine and theronine. Also included
in this CD are the aspartokinases of the extreme
thermophile, Thermus thermophilus HB27, the
Gram-negative obligate methylotroph, Methylophilus
methylotrophus AS1, and those single aspartokinases
found in Pseudomons, C. glutamicum, and Amycolatopsis
lactamdurans. B. subtilis 168 AKII, and the C.
glutamicum, Streptomyces clavuligerus and A.
lactamdurans aspartokinases are described as tetramers
consisting of two alpha and two beta subunits; the alpha
(44 kD) and beta (18 kD) subunits formed by two in-phase
overlapping polypeptides.
Length = 239
Score = 31.7 bits (73), Expect = 0.64
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D+ A LAA + AD + +DV+G+YT P
Sbjct: 152 DTSAVALAAALGADRCEIYTDVDGVYTADP 181
>gnl|CDD|218799 pfam05893, LuxC, Acyl-CoA reductase (LuxC). This family consists
of several bacterial Acyl-CoA reductase (LuxC) proteins.
The channelling of fatty acids into the fatty aldehyde
substrate for the bacterial bioluminescence reaction is
catalyzed by a fatty acid reductase multienzyme complex,
which channels fatty acids through the thioesterase
(LuxD), synthetase (LuxE) and reductase (LuxC)
components.
Length = 400
Score = 31.6 bits (72), Expect = 0.80
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 260 EISDLLSMEKHIDLIIPRGSSDLVRSI-QQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
++ L+ +H D++I G + ++ I + + I VD A I KA
Sbjct: 161 QLEQLIM--QHADVVIAWGGEEAIKWIRKHLPPGCDWIKFGPKISFAVVDPPAAIDKAA 217
>gnl|CDD|181831 PRK09411, PRK09411, carbamate kinase; Reviewed.
Length = 297
Score = 31.3 bits (71), Expect = 0.88
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIY 60
D D AA+LA +I AD L++++D + +Y
Sbjct: 201 DKDLAAALLAEQINADGLVILTDADAVY 228
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 31.3 bits (72), Expect = 1.1
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 226 NTTV--PKKHAK-TSQCKYFTKMLPRYPLHSQVST----REEISDLLSMEKHIDLIIPRG 278
NT V P + A TS K++P+Y V+ E + LL + D I G
Sbjct: 129 NTVVLKPSELAPATSAL--LAKLIPKYFDPEAVAVVEGGVEVATALL--AEPFDHIFFTG 184
Query: 279 SSDLVRSIQQK-SQH-IPV---LGHAEGICHVYVDKDADIRKAIK 318
S + + + + ++H PV LG G VDKDA++ A +
Sbjct: 185 SPAVGKIVMEAAAKHLTPVTLELG---GKSPCIVDKDANLEVAAR 226
>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase
Superfamily (AAK), AKiii-LysC-EC: this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is
a monofunctional class enzyme (LysC) found in some
bacteria such as E. coli. Aspartokinase is the first
enzyme in the aspartate metabolic pathway and catalyzes
the conversion of aspartate and ATP to aspartylphosphate
and ADP. In E. coli, LysC is reported to be a homodimer
of 50 kD subunits.
Length = 292
Score = 31.2 bits (71), Expect = 1.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D AA+LA + A+ L + +DV GIYT P
Sbjct: 204 DYSAALLAEALHAEELQIWTDVAGIYTTDP 233
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 31.2 bits (71), Expect = 1.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 300 EGICHVYVDKDADIRKAIKIARS----GSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPC 355
E IC V AD+ KA+K AR+ GS + ++ +R + + LAD E D + L
Sbjct: 33 EKICEVQEGDKADVDKAVKAARAAFKLGS-PWRTMDASERGRLLNKLADLIERDRAYLAS 91
Query: 356 L 356
L
Sbjct: 92 L 92
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 31.1 bits (71), Expect = 1.2
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKA 316
E+ D L +D I GS+ + R+I + PV G V +DAD+ A
Sbjct: 201 AEVGDALVAHPDVDAISFTGSTAVGRAIAAAAAANLKPVTLELGGKSPAIVLEDADLDAA 260
Query: 317 IKIA 320
+ A
Sbjct: 261 VDAA 264
Score = 29.6 bits (67), Expect = 3.6
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQ 345
I V D+ A+ AR+ L+ E+RA + +AD
Sbjct: 27 IATVPAATAEDVDAAVAAARAAFEAWSRLSAEERAAILRRIADL 70
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 30.4 bits (69), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 147 TPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGR 195
+E+ E++ A A++ G +V+C+ M E IK++VA R
Sbjct: 183 AKIEIECESLEE--------AKNAMNAGADIVMCDNMSVEEIKEVVAYR 223
>gnl|CDD|115237 pfam06567, Neural_ProG_Cyt, Neural chondroitin sulphate
proteoglycan cytoplasmic domain. This family represents
the C-terminal cytoplasmic domain of vertebrate neural
chondroitin sulphate proteoglycans that contain EGF
modules. Evidence has been accumulated to support the
idea that neural proteoglycans are involved in various
cellular events including mitogenesis, differentiation,
axonal outgrowth and synaptogenesis. This domain
contains a number of potential sites of phosphorylation
by protein kinase C.
Length = 120
Score = 29.1 bits (64), Expect = 1.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 430 TPSKLKSLSTGLKQIAESSHTNVGKFVKT 458
TPS+L + + L IAE SH NV KF T
Sbjct: 19 TPSELHNDNFSLSTIAEGSHPNVRKFCDT 47
>gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed.
Length = 312
Score = 30.0 bits (68), Expect = 2.8
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D + LA +I ADLLI+++ V ++ K+ +E + + GQ
Sbjct: 211 DKDFASEKLAEQIDADLLIILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQ---FA 267
Query: 93 TGGMDSKVNSA 103
G M KV +A
Sbjct: 268 PGSMLPKVEAA 278
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 29.4 bits (67), Expect = 2.9
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 242 FTKMLPRY--PLHSQVSTR--EEISDLLSMEKHIDLII-------PRGSSDLVRSIQQKS 290
FT L +Y L ++V +EI+ + D I+ P + + I+ +
Sbjct: 10 FTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALA 69
Query: 291 QHIPV----LGHAEGICHVY 306
+P+ LGH + I +
Sbjct: 70 GKVPILGVCLGH-QAIAEAF 88
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 29.8 bits (67), Expect = 3.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQG--LNPEDRAKAIYNLAD 344
IC V + D+ +A+ A+ + +N DR + +Y LAD
Sbjct: 34 ICKVSLATVEDVDRAVAAAKEAFENGEWGKMNARDRGRLMYRLAD 78
Score = 29.0 bits (65), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
+N DR + +Y LADL+ Q +L S D
Sbjct: 64 MNARDRGRLMYRLADLMEEHQEELATIESLD 94
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain. Puf repeats
(also labelled PUM-HD or Pumilio homology domain)
mediate sequence specific RNA binding in fly Pumilio,
worm FBF-1 and FBF-2, and many other proteins such as
vertebrate Pumilio. These proteins function as
translational repressors in early embryonic development
by binding to sequences in the 3' UTR of target mRNAs,
such as the nanos response element (NRE) in fly
Hunchback mRNA, or the point mutation element (PME) in
worm fem-3 mRNA. Other proteins that contain Puf domains
are also plausible RNA binding proteins. Yeast PUF1
(JSN1), for instance, appears to contain a single
RNA-recognition motif (RRM) domain. Puf repeat proteins
have been observed to function asymmetrically and may be
responsible for creating protein gradients involved in
the specification of cell fate and differentiation. Puf
domains usually occur as a tandem repeat of 8 domains.
This model encompasses all 8 tandem repeats. Some
proteins may have fewer (canonical) repeats.
Length = 322
Score = 29.5 bits (67), Expect = 3.8
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 3 GHTTRLCEQHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNG 58
GH RL + R I QKL+ + ++L E++ ++ L+ D NG
Sbjct: 82 GHVVRLSLDMYGC------RVI-QKLLESISEE-QISLLVKELRGHVVELVKDQNG 129
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
putative. This family consists of proteins restricted
to and found as paralogous pairs (typically close
together) in species of Pyrococcus, a hyperthermophilic
archaeal genus. Members are always found close to other
genes of threonine biosynthesis and appear to represent
the Pyrococcal form of aspartate kinase. Alignment to
aspartokinase III from E. coli shows that 300 N-terminal
and 20 C-terminal amino acids are homologous, but the
form in Pyrococcus lacks ~ 100 amino acids in between
[Amino acid biosynthesis, Aspartate family].
Length = 327
Score = 29.4 bits (66), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
D A L + + L+ +MSDV GI+T P
Sbjct: 182 DYSAVALGVLLNSKLVAIMSDVEGIFTADP 211
>gnl|CDD|220175 pfam09316, Cmyb_C, C-myb, C-terminal. Members of this family are
predominantly found in the proto-oncogene c-myb and the
viral transforming protein myb. Truncation of the domain
results in 'activation' of c-myb and subsequent
tumourigenesis.
Length = 168
Score = 28.6 bits (64), Expect = 4.1
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 224 TLNTTVPKKHAKTSQCKYF--TKMLPRYPLHSQVSTREEISDLLSMEKHIDLIIPRGSSD 281
T T P K+A +Q K + K LP+ P H + E+I +++ E DLII
Sbjct: 67 TPRTPTPFKNALAAQEKKYGPLKPLPQTPSHLE----EDIKEVIKQETGEDLIIVEEVEP 122
Query: 282 LVRSIQQ 288
++ I+Q
Sbjct: 123 PLKKIKQ 129
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 29.7 bits (67), Expect = 4.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 300 EGICHVYVDKDADIRKAIKIARSG-SRVLQGLNPEDRAKAIYNLAD 344
E I VY + D+ KA+K AR + E+R + + LAD
Sbjct: 34 EVIASVYAAGEEDVDKAVKAARKAFESWWSKVTGEERGELLDKLAD 79
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 29.3 bits (66), Expect = 4.3
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 254 QVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA 311
QV T RE + D + ++ + ++ GS+ + +++ + + G V VD+DA
Sbjct: 184 QVVTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANAGGKRIALELGGNAPVIVDRDA 243
Query: 312 DIRKAIKIARSGS 324
D+ AI+ G
Sbjct: 244 DLDAAIEALAKGG 256
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 29.5 bits (67), Expect = 4.3
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
I V + D+ A+ IA + E+RA+ + AD
Sbjct: 60 IGEVSLADAEDVDAALAIAAAAFAGWSATPVEERAEILEKAAD 102
>gnl|CDD|129196 TIGR00088, trmD, tRNA (guanine-N1)-methyltransferase. This model
is specfic for the tRNA modification enzyme tRNA
(guanine-N1)-methyltransferase (trmD). This enzyme
methylates guanosime-37 in a number of tRNAs.The
enzyme's catalytic activity is as follows:
S-adenosyl-L-methionine + tRNA =
S-adenosyl-L-homocysteine + tRNA containing
N1-methylguanine [Protein synthesis, tRNA and rRNA base
modification].
Length = 233
Score = 28.9 bits (65), Expect = 4.7
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 258 REEISDLLSMEKHIDLIIPRG---SSDLVRSIQQKSQHIPVLGHAEG----ICHVYVDKD 310
R+ + + + + L+ P+G R + Q I + G EG I + VD++
Sbjct: 68 RDALHSVKAPAGTVILLSPQGRKFDQAGARELAQNEHLILICGRYEGFDERIIQLEVDEE 127
Query: 311 ADIRK---------AIKIARSGSRVLQG-LNPE 333
I A+ + S R++ G L E
Sbjct: 128 ISIGDFVLTGGELPALTLIDSVVRLIPGVLGKE 160
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 29.1 bits (66), Expect = 5.3
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQK-SQH-IPV---LGHAEGICHVYVDKDADI 313
+E+ L+ +D I GS+ + ++I + +++ V LG G + V DAD+
Sbjct: 164 DEVGAALASHPRVDKISFTGSTAVGKAIMRAAAENLKRVTLELG---GKSPLIVFDDADL 220
Query: 314 RKAIKIARSGSRVLQG 329
A+K A G+ G
Sbjct: 221 DAAVKGAVFGAFGNAG 236
>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional.
Length = 465
Score = 29.1 bits (66), Expect = 5.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYTKAP 64
AA++ A + AD + + +DV+G+ T P
Sbjct: 217 AAIIGAALDADEIWIWTDVDGVMTTDP 243
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 29.1 bits (65), Expect = 5.6
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIK 318
E ++ L K LI+ G +V++ S P +G G Y+++ A+++KA++
Sbjct: 177 EGTNELMKNKDTSLILATGGEAMVKA--AYSSGTPAIGVGPGNGPAYIERTANVKKAVR 233
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 28.9 bits (66), Expect = 5.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYT 61
D+ A LAA ++AD + +DV+G+YT
Sbjct: 154 DTTAVALAAALKADECEIYTDVDGVYT 180
>gnl|CDD|188036 TIGR00236, wecB, UDP-N-acetylglucosamine 2-epimerase. This
cytosolic enzyme converts UDP-N-acetyl-D-glucosamine to
UDP-N-acetyl-D-mannosamine. In E. coli, this is the
first step in the pathway of enterobacterial common
antigen biosynthesis.Members of this orthology group
have many gene symbols, often reflecting the overall
activity of the pathway and/or operon that includes it.
Symbols include epsC (exopolysaccharide C) in
Burkholderia solanacerum, cap8P (type 8 capsule P) in
Staphylococcus aureus, and nfrC in an older designation
based on the effects of deletion on phage N4 adsorption.
Epimerase activity was also demonstrated in a
bifunctional rat enzyme, for which the N-terminal domain
appears to be orthologous. The set of proteins found
above the suggested cutoff includes E. coli WecB in one
of two deeply branched clusters and the rat
UDP-N-acetylglucosamine 2-epimerase domain in the other
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 365
Score = 28.6 bits (64), Expect = 6.7
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 249 YPLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQ 287
YP+H RE + L K + LI P D +
Sbjct: 235 YPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAA 273
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding
domain of ATP-binding cassette transporter-like systems
that belong to the type I periplasmic binding fold
protein superfamily. Periplasmic binding domain of
ATP-binding cassette transporter-like systems that
belong to the type I periplasmic binding fold protein
superfamily. They are mostly present in archaea and
eubacteria, and are primarily involved in scavenging
solutes from the environment. ABC-type transporters
couple ATP hydrolysis with the uptake and efflux of a
wide range of substrates across bacterial membranes,
including amino acids, peptides, lipids and sterols, and
various drugs. These systems are comprised of
transmembrane domains, nucleotide binding domains, and
in most bacterial uptake systems, periplasmic binding
proteins (PBPs) which transfer the ligand to the
extracellular gate of the transmembrane domains. These
PBPs bind their substrates selectively and with high
affinity. Members of this group include ABC-type
Leucine-Isoleucine-Valine-Binding Proteins (LIVBP),
which are homologous to the aliphatic amidase
transcriptional repressor, AmiC, of Pseudomonas
aeruginosa. The uncharacterized periplasmic components
of various ABC-type transport systems are included in
this group.
Length = 298
Score = 28.5 bits (64), Expect = 7.0
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 145 GGTPVEVLAENVNLKMEILVNSATWALDRGVSVVI--CNGMQKEAIKQIVAGRKIGTFFT 202
G +E++ E+ E +A +D GV VI + A + +
Sbjct: 37 LGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISP 96
Query: 203 DASAQS 208
A++ +
Sbjct: 97 GATSPA 102
>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated.
Length = 448
Score = 28.6 bits (65), Expect = 7.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYTKAP 64
AA+LA + A + + +DV GIYT P
Sbjct: 203 AALLAEALNASRVEIWTDVPGIYTTDP 229
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 28.7 bits (65), Expect = 8.1
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ-KSQHI-PV---LGHAEGICHVYVDKDADI 313
EE ++LL ++ D I GS+ + + + Q ++H+ PV LG G YVDK DI
Sbjct: 167 EETTELL--KQRFDYIFYTGSTSVGKIVMQAAAKHLTPVTLELG---GKSPCYVDKSCDI 221
Query: 314 RKAIK 318
A +
Sbjct: 222 DVAAR 226
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 28.6 bits (65), Expect = 8.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 269 KH--IDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIK 318
KH +DLI+ G +V++ S P +G G Y+D+ ADI++A+K
Sbjct: 175 KHPDVDLILATGGPGMVKAAY--SSGKPAIGVGPGNVPAYIDETADIKRAVK 224
>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily
(AAK), AK-DapDC; this CD includes the N-terminal
catalytic aspartokinase (AK) domain of the bifunctional
enzyme AK - DAP decarboxylase (DapDC) found in some
bacteria. Aspartokinase is the first enzyme in the
aspartate metabolic pathway, catalyzes the conversion of
aspartate and ATP to aspartylphosphate and ADP. DapDC,
which is the lysA gene product, catalyzes the
decarboxylation of DAP to lysine.
Length = 295
Score = 28.3 bits (63), Expect = 8.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMI 72
D+ AA AA++QA + +DV G++T P E A+++
Sbjct: 207 DTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLL 245
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 28.7 bits (64), Expect = 8.9
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGM-------QKEAIKQIVA----GRKIGTF 136
+ K+ SK + T RG + N + +K A+K+I+A GR +
Sbjct: 13 QRKLEETKTGSKYFAQTR---RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYL 69
Query: 137 FTDASAQSGGTPVEVLAENVNLKMEILV 164
F D V LA + +L+++ LV
Sbjct: 70 FVD---------VVKLAPSTDLELKKLV 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,692,577
Number of extensions: 2191615
Number of successful extensions: 2440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2401
Number of HSP's successfully gapped: 133
Length of query: 462
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 362
Effective length of database: 6,502,202
Effective search space: 2353797124
Effective search space used: 2353797124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)