RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11677
(462 letters)
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 116 bits (293), Expect = 2e-28
Identities = 38/66 (57%), Positives = 52/66 (78%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V+TREE+ DL ++K IDLIIPRGSS LVR IQ+ ++ IPV+GH+EGICH+YVD +A +
Sbjct: 204 VNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVD 263
Query: 315 KAIKIA 320
K ++
Sbjct: 264 KVTRLV 269
Score = 84.6 bits (210), Expect = 9e-18
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
RSG R+L L PE RA+ I++LADLL ++ ++L AN KDL +A + +A PLL RLSL+
Sbjct: 39 RSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA-EGRLAAPLLKRLSLS 97
Query: 431 PSKLKSLSTGLKQIAESSHTNVGK 454
SKL SL+ GL+QIA SS +VG+
Sbjct: 98 TSKLNSLAIGLRQIAASSQDSVGR 121
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 107 bits (270), Expect = 9e-27
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAP-WEEGAKMI--WTYTSEMRDTVQF 85
S+ D L + + + +IL +DV+G+YT+ P A+++ ++
Sbjct: 155 FSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-- 212
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKI-GTFFT 138
G + TGGM K+ ++GV I N I++ + G ++ GT T
Sbjct: 213 GTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266
Score = 39.6 bits (93), Expect = 0.001
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKI-GTFFT 202
+ ++GV I N I++ + G ++ GT T
Sbjct: 227 IRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 108 bits (273), Expect = 6e-26
Identities = 35/66 (53%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
+ TR+++SDLL +++IDL++PRGS+ LVR I+ ++ IPVLGHA+GIC +Y+D+DAD+
Sbjct: 195 IETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTK-IPVLGHADGICSIYLDEDADLI 253
Query: 315 KAIKIA 320
KA +I+
Sbjct: 254 KAKRIS 259
Score = 72.3 bits (178), Expect = 7e-14
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSL- 429
R +L+ ++ E R+ +Y + D L + + +AN DL+ A + G+A LL RL L
Sbjct: 24 RKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLF 83
Query: 430 TPSKLKSLSTGLKQIAE 446
K + + G+K +AE
Sbjct: 84 KGDKFEVMLQGIKDVAE 100
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
pathway, isopentenyl phsophate kinase, beta-alpha
sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
{Thermoplasma acidophilum} PDB: 3lkk_A*
Length = 249
Score = 104 bits (261), Expect = 1e-25
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAP-WEEGAKMIWTYTSEMRDTVQFGQ 87
I D + A +A ++ D+ + ++DV+GIY+K P A ++ ++ + F +
Sbjct: 142 YGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL----RDIDTNITFDR 197
Query: 88 KSKVGTGGMDSKVNSAT-WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
TGG+ K S V + NG E I I IGT
Sbjct: 198 VQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248
Score = 40.0 bits (94), Expect = 8e-04
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 170 ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
V + NG E I I IGT
Sbjct: 217 KSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase,
amino-acid biosynthesis, transferase, feedback
regulation, PUA domain; HET: RGP; 2.5A {Escherichia
coli} PDB: 2j5t_A* 2w21_A
Length = 367
Score = 105 bits (265), Expect = 3e-25
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE-GAKMI---WTYTSEMRDTVQFGQK 88
DND+L+A+ A AD L+L++D G+YT P A++I + +R
Sbjct: 148 DNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAG-DSV 206
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
S +GTGGM +K+ +A A G+ +I G + I ++ G +GT F
Sbjct: 207 SGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFH 256
Score = 39.8 bits (94), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
+ +A A G+ +I G + I ++ G +GT F
Sbjct: 218 LQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFH 256
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
jejuni} SCOP: c.73.1.3
Length = 251
Score = 99.5 bits (249), Expect = 5e-24
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQF--GQKS 89
DNDSL+A ADLL+++SD++G Y K P E AK + T + +Q S
Sbjct: 141 DNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGS 200
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVA--GRKIGTFF 137
+ GTGG+ +K+ +A + L+ + + +G K + + GT F
Sbjct: 201 EHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250
Score = 34.8 bits (81), Expect = 0.037
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 170 ALDRGVSVVICNGMQKEAIKQIVA--GRKIGTFF 201
L+ + + +G K + + GT F
Sbjct: 217 LLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Length = 286
Score = 90.0 bits (223), Expect = 2e-20
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 29 ISIKDNDSLAAMLAAEIQADL-LILMSDVNGIYTKAPWEEG-AKMIWTYTSEMRDTVQFG 86
+ +D + +L ++ L ++ ++DV+GI T + + + E +G
Sbjct: 164 LWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWG 223
Query: 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
TG M +K+++ RG I G ++ + A
Sbjct: 224 SSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHV 275
Score = 32.6 bits (74), Expect = 0.22
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
+++ RG I G ++ + A
Sbjct: 237 LDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHV 275
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding,
transferase, methanocald jannaschii, isopentenyl
monophosphate; 2.05A {Methanocaldococcus jannaschii}
PDB: 3k4y_A* 3k52_A* 3k56_A*
Length = 266
Score = 88.0 bits (218), Expect = 7e-20
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
I D + LA E++ADL++ +DV+G+ K I G S
Sbjct: 162 IISGDDIVPYLANELKADLILYATDVDGVLIDNK---PIKRIDKNNIYKILNYLSGSNSI 218
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
TGGM K+ + NG + I + + G GT
Sbjct: 219 DVTGGMKYKIE---MIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262
Score = 36.0 bits (83), Expect = 0.017
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 168 TWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
+ NG + I + + G GT
Sbjct: 229 EMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 89.5 bits (223), Expect = 2e-19
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
R + +++ + +++ L+IPRG L+ ++ + +PVL G CH++VD+ AD++KA+
Sbjct: 195 RSLVLEMIRLREYLSLVIPRGGYGLISFVRDNAT-VPVLETGVGNCHIFVDESADLKKAV 253
Query: 318 KIA 320
+
Sbjct: 254 PVI 256
Score = 70.3 bits (173), Expect = 3e-13
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R VL+ ++ KAI +A+ L ++ ++L+AN D+ A + GV + L+ RL+L
Sbjct: 24 REAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALN 83
Query: 431 PSKLKSLSTGLKQIAE 446
++ + + +
Sbjct: 84 DKRIDEMIKACETVIG 99
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
transfer, pyrimidine biosynthesis, transferase; 2.40A
{Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
2bmu_A* 2bri_A*
Length = 244
Score = 72.0 bits (177), Expect = 2e-14
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSK 90
D++AA+LA ++ADLL+++++V+G+YT P + AK I E+ + V G +
Sbjct: 138 TTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKA 197
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
+ +D +A G+ ++ + + +++ G GT
Sbjct: 198 GSSSVIDPL--AAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242
Score = 35.4 bits (82), Expect = 0.027
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 167 ATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
A G+ ++ + + +++ G GT
Sbjct: 208 AKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta
structure, metal binding protein; HET: ATP; 1.60A
{Azotobacter vinelandii}
Length = 276
Score = 63.8 bits (155), Expect = 1e-11
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE---GAKMIWTYTSEMRDTVQFGQ-KS 89
D+ A +LA A L ++ +V+GIYT P A+ +
Sbjct: 170 ADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFL--------PETSATDLAK 221
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G +D + V + NG+ + + G +GT
Sbjct: 222 SEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIR 270
Score = 33.4 bits (76), Expect = 0.14
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 147 TPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
+ ++ L ++ + V + NG+ + + G +GT
Sbjct: 215 SATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIR 270
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP
kinase, aspartokinase fold, pyrimidine nucleotide
synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
solfataricus} PDB: 2j4k_A* 2j4l_A*
Length = 226
Score = 60.5 bits (147), Expect = 1e-10
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
++AA++A + L++ ++V+G+Y K P K+I T ++R ++ Q + G
Sbjct: 120 AAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAG 179
Query: 93 TGG-MDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
T +D + + V++ N + I I+ G ++ +
Sbjct: 180 TYELLDPL--AIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 2e-10
Identities = 90/531 (16%), Positives = 158/531 (29%), Gaps = 203/531 (38%)
Query: 2 F-GHTTRLCEQHFLTNFNELFRSIFQKLIS--IKDND--SLAAMLAAEIQADL-----LI 51
F G+ + L E + F+++ + + ++ ND +LAA L E L LI
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 52 ---------------------LMSDVN----GIY--------TKAPWEEGAKMIWTYTSE 78
L V + T +EE + TY
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 79 MRDTVQFGQK------------SKVGTGGMDSKVNSATWALDR-------------GVS- 112
+ D ++F + KV T G++ W L+ +S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL----EW-LENPSNTPDKDYLLSIPISC 238
Query: 113 -----------VVICN--GMQKEAIKQIVAG-----RKIGTFFTDASAQSGGTPVEVLAE 154
VV G ++ + G + + T A A + E
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT----AVAIAETDSWESFFV 294
Query: 155 NVNLKMEIL-------------------VNSATWALDRGV-----SVVICNGMQKEAIKQ 190
+V + +L + + + GV S+ + + +E ++
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SNLTQEQVQD 351
Query: 191 IV--------AGRKIGTFFTDASAQ---SGGTPVEVLAEIWKNETLNTTVPKKHAKTS-- 237
V AG+++ + + SG P + L LN T+ K A +
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSG--PPQSL------YGLNLTLRKAKAPSGLD 403
Query: 238 QCKY-FTKMLPRY---------PLHSQ--VSTREEI-SDLLSME---KHIDLIIP----R 277
Q + F++ ++ P HS V + I DL+ D+ IP
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 278 GSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337
SDL + S I + I + V + + + +L
Sbjct: 464 DGSDL----RVLSGSI-SERIVDCIIRLPVKWE----TTTQF--KATHIL---------- 502
Query: 338 AIYNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQG----LNPED 384
D G SGL L + G +G RV+ +NP+D
Sbjct: 503 ------DFGPGGASGLGVLTHRNKDG--------TGVRVIVAGTLDINPDD 539
Score = 52.7 bits (126), Expect = 2e-07
Identities = 60/268 (22%), Positives = 94/268 (35%), Gaps = 81/268 (30%)
Query: 224 TLNTT--VPKK-HAKTSQCK-YFTKMLPRYPLHSQVSTREEIS--DLLSMEKHIDLIIPR 277
+L VP SQ + F K+LP P + E + +L+ K + +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPE-PTEGFAADDEPTTPAELVG--KFLGYV--- 68
Query: 278 GSSDLVRSIQQKSQHIPVL----GHAE-----G--ICHVYV-----DKDADIRKAIKIAR 321
S LV + Q VL E G I H + D + K ++ +
Sbjct: 69 --SSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIK 124
Query: 322 S--GSRVLQGLNPEDRAK--AIYNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVL 377
+ +R++ P D+ A++ +G +L ++F G G
Sbjct: 125 NYITARIMAK-RPFDKKSNSALFRAVGEGN------------AQLVAIF--G---G---- 162
Query: 378 QGLNPED-----RAKAIYN----LADLLISKQADLLDANSKDLSDATK---NGV-AKPLL 424
QG N +D R +Y L LI A+ L + DA K G+ L
Sbjct: 163 QG-NTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 425 SRLSLTPSK--LKS--LS---TGLKQIA 445
S TP K L S +S G+ Q+A
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLA 247
Score = 50.8 bits (121), Expect = 9e-07
Identities = 69/459 (15%), Positives = 133/459 (28%), Gaps = 154/459 (33%)
Query: 72 IWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR 131
+ S++++ QF + T G A D + E + G+
Sbjct: 26 SFFIASQLQE--QFNKILPEPTEGF--------AADDEPTTPA-------E-----LVGK 63
Query: 132 KIGTFFTDASAQSG--GTPVEVLAENVN-LKMEIL----VNSATWALDRGVSVVICNGMQ 184
+G + + + G +VL + + L +++ L + +
Sbjct: 64 FLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK--T 119
Query: 185 KEAIK-----QIVAGRKIGT-----FFTDASAQS-------GG-----TPVEVLAEIWKN 222
KE IK +I+A R F + GG E L ++++
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ- 178
Query: 223 ETLNTTVPKKHAKTSQCKYFTKMLPRYPLHSQ---VSTREEISDLLSMEKHIDLIIPRGS 279
Y + + E +S+L+ + + +G
Sbjct: 179 -------------------------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 280 SDLVRSIQQKSQ--------HIPV---------LGHAEGICHVYVDKDADIRKAIKIARS 322
+++ ++ S IP+ L H + ++R + +
Sbjct: 214 -NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL---KG 269
Query: 323 GSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQ---- 378
+ QGL A AI D E S + I + LF G R
Sbjct: 270 ATGHSQGLVT---AVAI-AETDSWE---SFFVSVRKAITV--LFFIGVRC-----YEAYP 315
Query: 379 --GLNPEDRAKAIYN--------LA--DLLISK-QADLLDAN-----SKDLSDATKNG-- 418
L P ++ N L+ +L + Q + N K + + NG
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 419 ---VAKPLLSRLSLTPSKLKSLSTGLKQIAESSHTNVGK 454
V+ P P L L+ L++ S + +
Sbjct: 376 NLVVSGP--------PQSLYGLNLTLRKAKAPSGLDQSR 406
Score = 47.0 bits (111), Expect = 1e-05
Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 123/328 (37%)
Query: 87 QKS-KVGTGGMD----SKVNSATWALDR---------GVSVVICNGMQKEAIKQIVAG-- 130
Q S + G G MD SK W +R G S I IV
Sbjct: 1624 QGSQEQGMG-MDLYKTSKAAQDVW--NRADNHFKDTYGFS-----------ILDIVINNP 1669
Query: 131 RKIGTFFTDASAQSGGTPVEVLAENVN-LKMEILVNSATWA------LDRGVSVVICNGM 183
+ F + + EN + + E +V+ ++ +
Sbjct: 1670 VNLTIHFGGEKGKR-------IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS- 1721
Query: 184 QKEAIKQIVAGRKIGTFFTDASAQSGGTP----VEVLA-EIWKNETLNTTVPKKHAKTSQ 238
+K + T FT Q P +E A E K++ L +P
Sbjct: 1722 EKGLLSA--------TQFT----Q----PALTLMEKAAFEDLKSKGL---IPAD------ 1756
Query: 239 CKYF--TKMLPRYPLHS------QVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS 290
F HS S ++D++S+E ++++ RG ++Q
Sbjct: 1757 -ATFAG---------HSLGEYAALAS----LADVMSIESLVEVVFYRG-----MTMQVAV 1797
Query: 291 QHIPVLGHAEGICHVYVDK------DADIRKAI-KIARSGSRVLQGLNPEDRAKAIYNLA 343
+ G+ + + ++ + ++ + +++ +N YN+
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--------YNVE 1849
Query: 344 DQ-----GEM-DVSGLPCLLLFIRLGSL 365
+Q G++ + + +L FI+L +
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 28.5 bits (63), Expect = 5.8
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 33/127 (25%)
Query: 336 AKAIYNLADQGEMDVSGLPCLLLFIR-----LGSLFISGTRSGSRVLQGL------NPED 384
A+ ++N AD D G +L + L F G G R+ + D
Sbjct: 1642 AQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHF--GGEKGKRIRENYSAMIFETIVD 1698
Query: 385 ---RAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSK-----LKS 436
+ + I+ + + + K L AT+ +P L K LK
Sbjct: 1699 GKLKTEKIFKEINEHSTS---YTFRSEKGLLSATQF--TQPAL----TLMEKAAFEDLK- 1748
Query: 437 LSTGLKQ 443
S GL
Sbjct: 1749 -SKGLIP 1754
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
1.80A {Aeropyrum pernix}
Length = 316
Score = 60.8 bits (147), Expect = 2e-10
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D +++LA ++ ADLL++++DV G+ E + SE++ ++ G
Sbjct: 215 DKDLASSLLATQLNADLLVILTDVPGVAVNYGREGERWLRRAAASELKKYLREGH---FP 271
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138
G M KV +A ++R VI + E +Q+++ + GT
Sbjct: 272 PGSMGPKVEAAISFVERTGKPAVIGSL---EEARQVLSL-QAGTVVM 314
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB
target, transferase; 3.00A {Giardia lamblia atcc 50803}
Length = 317
Score = 60.5 bits (146), Expect = 3e-10
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D ++LA + +D L++++DV + K+ SE+ + G
Sbjct: 216 DKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGH---FA 272
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138
G M KV +A +I + + G K GT
Sbjct: 273 AGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNG-KCGTRII 315
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure,
metal binding protein; HET: ATP; 1.60A {Azotobacter
vinelandii}
Length = 270
Score = 57.9 bits (140), Expect = 1e-09
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ +LA + +I + D +G+YT P + A I + + + G +
Sbjct: 170 DAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRIS--VDEMKAKGLHDSI-- 225
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
++ V + V + NG+ + + +AG +GT
Sbjct: 226 --LEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGT 265
Score = 29.8 bits (67), Expect = 1.5
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 147 TPVEVLAENVNLK-MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
+ E+ A+ ++ +E V + V + NG+ + + +AG +GT
Sbjct: 212 SVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGT 265
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase,
hyperthermophiles, ADP site, phosphoryl group transfer;
HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Length = 314
Score = 56.6 bits (136), Expect = 5e-09
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D LA E+ AD+ ++++DVNG E+ + E+R + G
Sbjct: 214 DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGH---FK 270
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGT 135
G M KV +A ++ G +I + E + + G K GT
Sbjct: 271 AGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGT 310
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP
synthesys, open alpha/beta sheet, phosphotransferase,
transferase; HET: ADP; 1.39A {Enterococcus faecalis}
PDB: 1b7b_A 2we4_A*
Length = 310
Score = 56.4 bits (136), Expect = 5e-09
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D + LA + AD L++++ V+ + + ++ +E+ + Q G
Sbjct: 208 DKDFASEKLAELVDADALVILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGH---FA 264
Query: 93 TGGMDSKVNSATWALDRGV--SVVICNGMQKEAIKQIVAGRKIGT 135
G M K+ +A ++ +I + E + + +GT
Sbjct: 265 PGSMLPKIEAAIQFVESQPNKQAIITSL---ENLGSMSGDEIVGT 306
>2ij9_A Uridylate kinase; structural genomics, protein structure
initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus}
SCOP: c.73.1.3
Length = 219
Score = 55.5 bits (134), Expect = 5e-09
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D+ AA+LA I+AD+ I ++V+G+Y+ P A + ++ + V
Sbjct: 117 DATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGT 176
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
+D +A + + G E I + V G +GT
Sbjct: 177 NVVIDLL--AAKIIERSKIKTYVILG-TPENIMKAVKGEAVGT 216
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 6e-09
Identities = 69/465 (14%), Positives = 139/465 (29%), Gaps = 109/465 (23%)
Query: 11 QHFLTNFNELFRSIFQKLISIKD-NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGA 69
Q+ + +F F KD D ++L+ E +++ V+G
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL--------- 65
Query: 70 KMIWTYTSEMRDTVQ-FGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIV 128
++ WT S+ + VQ F V + + + ++ E +
Sbjct: 66 RLFWTLLSKQEEMVQKF-----VEE-VLRINYK---FLMSP---------IKTEQRQP-- 105
Query: 129 AGRKIGTFFTDASAQSGGTPVEVLAENVN-LKMEILVNSATWALDRGVSVVICNGMQKEA 187
+ + + + NV+ L+ + + A L +V+I G+ +
Sbjct: 106 --SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GV-LGS 161
Query: 188 IKQIVAG-----RKIGTFFTDA----SAQSGGTPVEVLAEIWKNETLNTTVPKKHAKTSQ 238
K VA K+ + ++ +P VL + L + TS+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNW--TSR 216
Query: 239 CKYFTKMLPRYPLHSQVSTREEISDLLSMEKHID-LIIPRGSSDLVRSIQQKSQHIPVLG 297
+ + + +H S + E+ LL + + + L++ + V++ ++
Sbjct: 217 SDHSSN--IKLRIH---SIQAELRRLLKSKPYENCLLVLL---N-VQN----AKAWNAFN 263
Query: 298 HAEGICHVYV---DKD-ADIRKAIKIAR-SGSRVLQGLNPEDRAKAIYNLADQGEMDVSG 352
+ C + + K D A S L P++ K++ L +
Sbjct: 264 LS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSL--LLKYLDCRPQD 317
Query: 353 LP---C----LLLFIRLGSLFISG---------------TRSGSRVLQGLNPEDRAKAIY 390
LP L I + G T L L P + K
Sbjct: 318 LPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 391 NLA----DLLISKQADLL-----DANSKDLSDATKNGVAKPLLSR 426
L+ I LL D D+ L+ +
Sbjct: 377 RLSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 50.2 bits (119), Expect = 1e-06
Identities = 72/453 (15%), Positives = 146/453 (32%), Gaps = 125/453 (27%)
Query: 7 RLCEQ--HFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
+L Q T+ ++ +I ++ SI+ + + + LL+L +V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVL-LNV-------- 253
Query: 65 WEEGAKMIWTYTSEMRDTVQFGQKSK--VGTGGMDSKV-NSATWALDRGVSVV-ICNGMQ 120
W F K + T +V + + A +S+ +
Sbjct: 254 QN---AKAWNA---------FNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 121 KEAIKQIVAGRKIGTFFTDASAQ-SGGTP--VEVLAENVNLKMEILVNSATW-------- 169
+ +K ++ + + D + P + ++AE I ATW
Sbjct: 300 PDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNC 352
Query: 170 -ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEIWK------- 221
L + + N ++ +++ ++ F A P +L+ IW
Sbjct: 353 DKLTTIIESSL-NVLEPAEYRKMF--DRLSVFPPSAH-----IPTILLSLIWFDVIKSDV 404
Query: 222 ----NETLNTTVPKKHAKTSQCKYFTKMLPRYPLHS-QVSTREEISDLLSMEKHIDLI-- 274
N+ ++ +K K S + S + + ++ + ++ H ++
Sbjct: 405 MVVVNKLHKYSLVEKQPKES----------TISIPSIYLELKVKLENEYAL--HRSIVDH 452
Query: 275 --IPRG--SSDLVRSIQQKSQ--------HIPVLGHAEGIC---HVYVD---KDADIRK- 315
IP+ S DL Q H+ + H E + V++D + IR
Sbjct: 453 YNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 316 --AIKIARSGSRVLQGLNPEDRAKAIYN--LADQGEMDVSGLPCLLLFI-RLGSLFISGT 370
A + S LQ L Y + D + +L F+ ++ I
Sbjct: 511 STAWNASGSILNTLQQLK-------FYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 371 RSGSRVLQ-GLNPEDRAKAIYNLADLLISKQAD 402
+ +L+ L ED +AI+ A KQ
Sbjct: 564 Y--TDLLRIALMAED--EAIFEEA----HKQVQ 588
Score = 47.2 bits (111), Expect = 9e-06
Identities = 88/566 (15%), Positives = 158/566 (27%), Gaps = 188/566 (33%)
Query: 10 EQHFLTNFN-----ELFRSIFQKLISIKDNDSLAAMLAAEIQADLL--ILMSDVNGIYTK 62
E F+ NF+ ++ +SI K ++ D + A L L+S + K
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 63 A---------PW------EE--GAKMIWTYTSEMRD----TVQFGQKSKVGTGGMDSKVN 101
+ E M+ E RD Q K V K+
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 102 SATWALDRGVSVVICNGMQKEAIKQIVAG-----RKIGTFFTDA----SAQSGGTPVEVL 152
A L +V+I G+ + K VA K+ + ++ +P VL
Sbjct: 142 QALLELRPAKNVLID-GV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 153 AENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 212
L +I N + D ++ + + +++++ + + +
Sbjct: 200 EMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKP----YENC-------- 246
Query: 213 VEVLAEIWKNETLN----------TT----------------VPKKH------------- 233
+ VL + + N TT + H
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 234 -AKTSQCKYFTKMLPR-----YPLH-SQVSTREEISDLLS------------MEKHIDLI 274
K C+ + LPR P S ++ E I D L+ + I+
Sbjct: 307 LLKYLDCR--PQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 275 IPRGSSDLVR------SIQQKSQHIP--VLG---------HAEGI---CHVY--VDKDA- 311
+ R S+ S HIP +L + H Y V+K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 312 -------DIRKAIKIARSGSRVL-----------QGLNPEDRAKA-----IYN------- 341
I +K+ L + + +D Y+
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 342 LADQGEMDVSGLPCLLL---F----IRLGSLFISGTRSGSRVLQGL---------NPEDR 385
+ E + + L F IR S + + S LQ L N
Sbjct: 483 NIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 386 AKAIYNLADLLISKQADLLDANSKDL 411
+ + + D L + +L+ + DL
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL 567
Score = 35.2 bits (80), Expect = 0.055
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 35/114 (30%)
Query: 380 LNPEDRAKAIYNLADLLISKQA--------DLLDAN-----------SKDLSDATKNGVA 420
+ +D L L+SKQ ++L N + S T+ +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 421 K--------PLLSRLSLT-PSKLKSLSTGLKQIAESSHTNV-----GKFVKTIL 460
+ + ++ +++ L L ++ NV KT +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWV 166
Score = 30.6 bits (68), Expect = 1.4
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 390 YNLADLLISKQADLL-DANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIAESS 448
Y D+L + + + + KD+ D K+ ++K + + ++ + L S
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSK 74
Query: 449 HTN-VGKFVKTIL 460
V KFV+ +L
Sbjct: 75 QEEMVQKFVEEVL 87
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national
project on protein structural AN functional analyses;
1.92A {Thermus thermophilus} PDB: 3u6u_A
Length = 269
Score = 55.2 bits (134), Expect = 9e-09
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D +AA+LA A+ L+ +S+V G+ + P +E + + + D + G
Sbjct: 172 DQIAALLATLYGAEALVYLSNVPGLLARYP-DEASLVREIPVERIEDPEYLA----LAQG 226
Query: 95 GMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGT 135
M KV A A+ GV VV +G + I++ ++G GT
Sbjct: 227 RMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGT 266
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
protein structure initiative, NYSGXRC, PSI; 2.80A
{Mycobacterium tuberculosis} SCOP: c.73.1.2
Length = 299
Score = 52.2 bits (126), Expect = 1e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ AA +A + A+ L++++D++G+YT+ W + ++ SE+ DT Q
Sbjct: 191 DTAAAAVAEALGAEKLLMLTDIDGLYTR--WPDRDSLV----SEI-DTGTLAQLLPTLEL 243
Query: 95 GMDSKVNSATWALDRGV-SVVICNG 118
GM KV + A+ GV S I +G
Sbjct: 244 GMVPKVEACLRAVIGGVPSAHIIDG 268
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase,
arginine biosynthesis, phosphoryl group transfer,
protein crystallography; HET: NLG ANP; 1.5A {Escherichia
coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A*
1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Length = 258
Score = 50.9 bits (123), Expect = 2e-07
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY-------TKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
D A LAA + ADL IL+SDV+GI + + ++I
Sbjct: 162 DQAATALAATLGADL-ILLSDVSGILDGKGQRIAEMTAAKAEQLI--------------- 205
Query: 88 KSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138
+ + T GM KVN+A A V I + E + + G +GT
Sbjct: 206 EQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex,
regulation of arginine biosynthesis nitrogen metabolism,
kinase, transferase, transcription; HET: ARG ADP NLG
ATP; 2.51A {Arabidopsis thaliana}
Length = 298
Score = 51.0 bits (123), Expect = 3e-07
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D++A LAA + A+ LIL++DV GI E+ + +I E+ V+ +
Sbjct: 197 DTVAGELAAALGAEKLILLTDVAGILEN--KEDPSSLI----KEIDIKGVKKMIEDGKVA 250
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
GGM KV +L +GV + I +G
Sbjct: 251 GGMIPKVKCCIRSLAQGVKTASIIDG 276
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription
regulation, transfera cyanobacteria, transcription; HET:
NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Length = 321
Score = 49.2 bits (118), Expect = 1e-06
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D++A +AA + A+ LIL++D GI + +I + + +
Sbjct: 209 DTVAGEIAAALNAEKLILLTDTRGILED--PKRPESLI----PRLNIPQSRELIAQGIVG 262
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTDASAQSGGTPVE 150
GGM KV+ +L +GV + I +G A+ +I IGT + P +
Sbjct: 263 GGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHEAHQPWQ 321
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine
biosynthesi binding, nucleotide-binding, transferase;
HET: ADP NLG; 2.06A {Streptococcus mutans}
Length = 279
Score = 47.9 bits (115), Expect = 3e-06
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY------TKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
D LA +A + AD LILM++V G+ K + + I
Sbjct: 194 DYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKI---------------D 238
Query: 89 SKVGTGGMDSKVNSATWALDRGV-SVVICNG 118
+ V T GM K+ SA + GV V+I +
Sbjct: 239 TAVITAGMIPKIESAAKTVAAGVGQVLIGDN 269
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid
kinase, phosphoryl group transfer, arginine metabolism,
transferase; HET: ARG NLG; 2.75A {Thermotoga maritima}
SCOP: c.73.1.2
Length = 282
Score = 46.7 bits (112), Expect = 6e-06
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY------TKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
D+ AA +A + A+ LIL++DV+G+ + +E ++I +
Sbjct: 182 DTAAAEIAKSLMAEKLILLTDVDGVLKDGKLISTLTPDEAEELI---------------R 226
Query: 89 SKVGTGGMDSKVNSATWALDRGV-SVVICNG 118
TGGM KV A A+ GV +V I NG
Sbjct: 227 DGTVTGGMIPKVECAVSAVRGGVGAVHIING 257
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 46.6 bits (110), Expect = 7e-06
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKV 91
D+ AA A EI AD++++ V+G++ + P A+++ V +
Sbjct: 184 STDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELL--------TAVSHREVLDR 235
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G D+ + + +D G+ +++ N + I + V G KIGT T
Sbjct: 236 GLRVADAT--AFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280
Score = 30.4 bits (68), Expect = 1.3
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 EVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
EVL + + + + + +D G+ +++ N + I + V G KIGT T
Sbjct: 231 EVLDRGLRV-ADAT--AFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} SCOP: c.73.1.2
Length = 300
Score = 45.6 bits (109), Expect = 1e-05
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY-------TKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
D +A +A ++A+ L+L++++ G+ T E+ ++I
Sbjct: 198 DLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELI--------------- 242
Query: 88 KSKVGTGGMDSKVNSATWALDRGV-SVVICNG 118
GGM K+ A A+ GV S I +G
Sbjct: 243 ADGTIYGGMLPKIRCALEAVQGGVTSAHIIDG 274
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 45.6 bits (109), Expect = 1e-05
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM-IWTYTSEMRDTVQFGQKSKVGT 93
D A LA + ++ +++ GI G K+ + E D + K
Sbjct: 202 DVAAGELARVFEPLKIVYLNEKGGIIN---GSTGEKISMINLDEEYDDLM----KQSWVK 254
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
G K+ LD S +
Sbjct: 255 YGTKLKIREIKELLDYLPRSSSVAII 280
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino
acid kinase family; 2.50A {Ureaplasma parvum}
Length = 256
Score = 44.9 bits (106), Expect = 2e-05
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 34 NDSLAAMLAAEIQAD-LLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKV 91
DS AA+ AAE ++ +L+ + V+G+Y P A+ + + F
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFY--------EHITFNMALTQ 210
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + + +++++ N + AI ++ + T
Sbjct: 211 NLKVMDA--TALALCQENNINLLVFNIDKPNAIVDVLEKKNKYT 252
Score = 29.9 bits (67), Expect = 1.6
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 147 TPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
T L +N+ + M+ + + +++++ N + AI ++ + T
Sbjct: 203 TFNMALTQNLKV-MDAT--ALALCQENNINLLVFNIDKPNAIVDVLEKKNKYT 252
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase,
transferase; HET: COA; 2.67A {Maricaulis maris} PDB:
3s7y_A 3s6h_A*
Length = 460
Score = 43.9 bits (104), Expect = 8e-05
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D L +Q ++ ++ G+ + + I ++ D + ++ G
Sbjct: 212 DVAVRALVHALQPYKVVFLTGTGGLLDE--DGDILSSI-NLATDFGDLM----QADWVNG 264
Query: 95 GMDSKVNSATWALDRGVSVVICNG 118
GM K+ LD +
Sbjct: 265 GMRLKLEEIKRLLDDLPLSSSVSI 288
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 43.1 bits (102), Expect = 1e-04
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGT- 93
D A L E+Q +I ++ G+ K+I + + ++ +
Sbjct: 215 DFAANELVQELQPYKIIFLTGTGGLLDA-----EGKLI----DSINLSTEYDHLMQQPWI 265
Query: 94 -GGMDSKVNSATWALDRGVSVVICNG 118
GGM K+ LDR +
Sbjct: 266 NGGMRVKIEQIKDLLDRLPLESSVSI 291
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter
pylori} PDB: 4a7x_A*
Length = 240
Score = 42.2 bits (99), Expect = 2e-04
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
D+ A + A EI +DL+I + V+GIY K P + + AK + DT+ +
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKL--------DTLSYNDALIGD 195
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRK-IGT 135
MD + + A D + +V+CN +K + Q++ ++ + +
Sbjct: 196 IEVMDD--TAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFS 237
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis,
amino acid kinase domain GCN5-related acetyltransferase,
GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB:
3zzi_A*
Length = 464
Score = 42.7 bits (101), Expect = 2e-04
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM-IWTYTSEMRDTVQFGQKSKVGT 93
D A LA + ++ +++ GI G K+ + E D + K
Sbjct: 202 DVAAGELARVFEPLKIVYLNEKGGIIN---GSTGEKISMINLDEEYDDLM----KQSWVK 254
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
G K+ LD S +
Sbjct: 255 YGTKLKIREIKELLDYLPRSSSVAII 280
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP:
c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Length = 247
Score = 41.1 bits (96), Expect = 4e-04
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
DS A + EI+AD+++ + V+G+Y P + AK+ + + +
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLY--------KNLSYAEVIDKE 195
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140
MD ++ T A D G+ + + N + A++Q+V G + GT +
Sbjct: 196 LKVMDL--SAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241
Score = 29.5 bits (66), Expect = 2.0
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 150 EVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 204
EV+ + + + M++ + T A D G+ + + N + A++Q+V G + GT +
Sbjct: 190 EVIDKELKV-MDLS--AFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 7e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
Query: 120 QKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKME 161
+K+A+K++ A K+ + D SA P LA + ME
Sbjct: 18 EKQALKKLQASLKL---YADDSA-----P--ALA--IKATME 47
Score = 37.6 bits (86), Expect = 0.002
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 17/46 (36%)
Query: 184 QKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEIWKNETLNTTV 229
+K+A+K++ A K+ + D SA P LA + T+
Sbjct: 18 EKQALKKLQASLKL---YADDSA-----P--ALA-------IKATM 46
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation,
ATP-binding, nucleotid binding, pyrimidine biosynthesis,
transferase; 2.34A {Xanthomonas campestris PV} PDB:
3ek5_A
Length = 243
Score = 40.3 bits (94), Expect = 7e-04
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
DS AA+ A EI ADLL+ + V+G+Y K P + A D++ + + G
Sbjct: 145 TDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRY--------DSLTYDEVIMQG 196
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + A D + + I + + +I+ G +IGT
Sbjct: 197 LEVMDT--AAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGT 237
Score = 28.3 bits (63), Expect = 4.2
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 150 EVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
EV+ + + + M+ + A D + + I + + +I+ G +IGT
Sbjct: 191 EVIMQGLEV-MDTA--AFALARDSDLPLRIFGMSEPGVLLRILHGAQIGT 237
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein
structure initiative, NYSGXRC, PYRH, putative uridylate
kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP:
c.73.1.3
Length = 252
Score = 39.1 bits (91), Expect = 0.002
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 34 NDSLAAMLAAEIQAD-LLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKV 91
D+ AA+ AAEI+AD +L+ + V+G+Y P + A D + G+ K
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKF--------DELTHGEVIKR 194
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSG 145
G MD+ ++T ++D + +V+ N + I+++V G IGT ++ G
Sbjct: 195 GLKIMDA--TASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKVCDEG 246
Score = 29.1 bits (65), Expect = 2.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 167 ATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSG 209
+T ++D + +V+ N + I+++V G IGT ++ G
Sbjct: 204 STLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKVCDEG 246
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural
genomics, structure initiative, PSI; 2.60A {Neisseria
meningitidis} SCOP: c.73.1.3
Length = 239
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
D+ AA+ AE+ D+++ ++V+G+YT P + A +T+ F +
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRY--------ETITFDEALLKN 194
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
MD+ + +R +++V+ ++ ++K+++ G GT
Sbjct: 195 LKVMDA--TAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238
Score = 28.7 bits (64), Expect = 3.3
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 150 EVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
E L +N+ + M+ + +R +++V+ ++ ++K+++ G GT
Sbjct: 189 EALLKNLKV-MDAT--AFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 38.4 bits (90), Expect = 0.004
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKI 319
E+S+ L I LI+ G +V++ S P +G G V +D+ ADI++A+
Sbjct: 176 ELSNALMKHDDIALILATGGPGMVKAAY--SSGKPAIGVGAGNVPVVIDETADIKRAVAS 233
Query: 320 ARSG 323
Sbjct: 234 VLMS 237
Score = 30.3 bits (69), Expect = 1.5
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 311 ADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGE 347
A++ I + + E K +
Sbjct: 7 AELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAAN 43
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 38.3 bits (90), Expect = 0.005
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
AA +A +QA+ L+ ++ +GI + + Q +
Sbjct: 207 VQAAASVAVSLQAEKLVYLTLSDGIS-----RPDGTLA----ETLSAQEAQSLAEHAASE 257
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAI 124
++SA AL+ GV V I NG ++
Sbjct: 258 TRR--LISSAVAALEGGVHRVQILNGAADGSL 287
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 36.2 bits (84), Expect = 0.020
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKI 319
+ +D L K +I+ G S +V++ S P +G G ++++ A+I +A+K
Sbjct: 181 QGTDQLMKHKDTAVILATGGSAMVKAAY--SSGTPAIGVGPGNGPAFIERSANIPRAVKH 238
Query: 320 ARSG 323
Sbjct: 239 ILDS 242
Score = 30.0 bits (68), Expect = 1.6
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 306 YVDKD----ADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGE 347
DKD ++R I+ A + L ++ + + +AD G
Sbjct: 3 LEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGY 48
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 36.0 bits (84), Expect = 0.026
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
E + V D+ +A++ A G +V + R++ + D
Sbjct: 33 EVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVD 77
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 35.4 bits (82), Expect = 0.044
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 298 HAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+E + + ++ AI A++ + +P RA+ + A
Sbjct: 555 PSEVLGQICQAGTTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQ 601
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 34.8 bits (81), Expect = 0.055
Identities = 5/45 (11%), Positives = 19/45 (42%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+C + ++ +A++ A++ + +R++ + A
Sbjct: 47 RVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAAR 91
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 34.9 bits (81), Expect = 0.063
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 298 HAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+ + V KAI+ A + + +NPE+RA + A
Sbjct: 61 KDQLVGSVSKANQDLAEKAIQSADEAFQTWRNVNPEERANILVKAAA 107
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 34.8 bits (81), Expect = 0.064
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
E I ++ A + +AI A+ + ++P R + + AD
Sbjct: 41 EMIAKLHAATPAIVERAIASAKRAQKEWAAMSPMARGRILKRAAD 85
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine
biosynthesis, ATP-binding, nucleotide-binding, OPPF,
PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Length = 255
Score = 34.1 bits (78), Expect = 0.064
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 34 NDSLAAMLAAEIQADLLILMSD-VNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKV 91
D + A E+ +D +++ V+G++T P + AKM + + +
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMY--------RKLNYNDVVRQ 200
Query: 92 GTGGMDSKVNSA-TWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142
MD +A A D + + N + +++I G +GT D ++
Sbjct: 201 NIQVMDQ---AALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 249
Score = 28.7 bits (64), Expect = 3.7
Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 150 EVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 206
+V+ +N+ + M+ + A D + + N + +++I G +GT D ++
Sbjct: 196 DVVRQNIQV-MDQA--ALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 249
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 34.0 bits (79), Expect = 0.11
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+ + + + A++ A + P+ RA+ + LAD
Sbjct: 49 DVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLAD 93
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive,
ACT DOMA amino-acid biosynthesis, threonine
biosynthesis; HET: ANP; 2.30A {Methanocaldococcus
jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Length = 473
Score = 33.4 bits (77), Expect = 0.16
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYT 61
AA++ + AD++ + +DV+G+YT
Sbjct: 214 AALIGYGLDADIIEIWTDVSGVYT 237
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 33.3 bits (77), Expect = 0.17
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 300 EGICHVYVDKDADIRKAIKIARSG--SRVLQGLNPEDRAKAIYNLAD 344
IC V + + +D+ KA+ A+ + + +N DR + +Y LAD
Sbjct: 63 SVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLAD 109
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain,
alloste S-adenosylmethionine, lysine, allosteric
effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis
thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Length = 510
Score = 32.8 bits (75), Expect = 0.26
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYT 61
A + + + + DV+G+ T
Sbjct: 237 ATTIGKALGLKEIQVWKDVDGVLT 260
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 32.5 bits (75), Expect = 0.28
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
GI + A I A+ A P +R+ A+ +AD
Sbjct: 51 AGIIDLAEASHAQIDAAVDAAERAFVGWSQTTPAERSNALLKIAD 95
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Length = 446
Score = 32.6 bits (75), Expect = 0.29
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYT 61
++++A + ADL +DV+G
Sbjct: 192 GSIISAGVNADLYENWTDVSGFLM 215
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 32.5 bits (75), Expect = 0.34
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 298 HAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+E + A+ A++ A + + EDR++ + A
Sbjct: 61 PSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAA 107
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 32.1 bits (74), Expect = 0.35
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 300 EGICHVYVDKDADIRKAIKIARS---GSRVLQGLNPEDRAKAIYNLAD 344
E +C V D+ KA+K AR + ++ +R + + LAD
Sbjct: 47 EKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLAD 94
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 32.2 bits (74), Expect = 0.37
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYT 61
AA+LA + A + + +DV GIYT
Sbjct: 205 AALLAEALHASRVDIWTDVPGIYT 228
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 30.3 bits (68), Expect = 0.41
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 292 HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRA 336
+P L G+ + V A + + S L + ED A
Sbjct: 59 FLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEA 103
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 32.1 bits (74), Expect = 0.42
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 300 EGICHVYVDKDADIRKAIKIARS---GSRVLQGLNPEDRAKAIYNLAD 344
E IC V D+ KA+K AR+ + ++ R + + LAD
Sbjct: 46 EVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLAD 93
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 31.8 bits (73), Expect = 0.57
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
E + + ++ +A K A + ++R + + +A+
Sbjct: 53 EVLGVAARGGEREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAE 97
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 30.7 bits (70), Expect = 1.0
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 294 PVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
PV G + V + R G L+ L RA + ++
Sbjct: 29 PVTG--VALVRVSSEGLDLARAFSFAREDGGAALRALTYAQRAARLADIVK 77
Score = 28.4 bits (64), Expect = 5.7
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410
G L+ L RA + ++ LL +K+ D + +
Sbjct: 54 EDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATAN 93
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 30.6 bits (70), Expect = 1.0
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 300 EGICHVYVDKDADIRKAIKIARSG--SRVLQGLNPEDRAKAIYNLAD 344
E + D+RKA+ AR + ++ +R++ ++ +AD
Sbjct: 50 EVVGTWPEASADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVAD 96
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 30.6 bits (70), Expect = 1.1
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQG-----LNPEDRAKAIYNLAD 344
I + D+ A+ A++ +G + RA+ + +A
Sbjct: 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAA 83
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription,
RNA binding protein; 2.69A {Saccharomyces cerevisiae}
PDB: 4dzs_A 3bx2_A 3bx3_A
Length = 333
Score = 30.5 bits (69), Expect = 1.2
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 1 MFGHTTRLCEQHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIY 60
H + T R++ QKLI D A ++ ++ + L D+NG +
Sbjct: 83 SSPHFVEISLNPHGT------RAL-QKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNH 135
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 300 EGICHVYVDKDADIRKAIKIARSG--SRVLQGLNPEDRAKAIYNLAD 344
E I V D +AI AR S E R K + +AD
Sbjct: 59 EVIFTVSEGTKEDAERAILAARRAFESGEWSQETAETRGKKVRAIAD 105
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX,
RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Length = 144
Score = 29.2 bits (65), Expect = 1.8
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 291 QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341
H+P+L + + +V+V + +A ++R + + K
Sbjct: 83 LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQ 133
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative
initiati amino-acid biosynthesis, ATP-binding; HET: LYS;
2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Length = 421
Score = 29.8 bits (68), Expect = 2.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYT 61
D+ A LAA + AD+ + SDV+G+YT
Sbjct: 155 DTTAVALAAALNADVCEIYSDVDGVYT 181
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 29.7 bits (67), Expect = 2.4
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 298 HAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGE 347
+ + A+ AR+G RA A+ A E
Sbjct: 537 ETGDLKPIADATPDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLE 586
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript
evidence; PUF repeats, RNA binding protein-RNA complex;
HET: EPE; 2.90A {Caenorhabditis elegans}
Length = 382
Score = 29.6 bits (66), Expect = 2.5
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 1 MFGHTTRLCEQHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIY 60
+ G +C+ F R + Q + D+ ++ ++ DL + +D I+
Sbjct: 95 IDGGLLAMCKDKFAC------RVV-QLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIH 147
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold,
iron-molybdenum cofactor, ST genomics; HET: MSE PG4;
1.70A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 2kla_A
Length = 105
Score = 27.7 bits (62), Expect = 2.7
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 161 EILVNSATWA---LDRGVSVVICNGMQKEAIKQIVAGRKI 197
+++ N + + V+ +IC + +E K+ +I
Sbjct: 40 KVIFNDESGKKSIVKENVNAIICKNISEENYKKFSKKIEI 79
Score = 26.2 bits (58), Expect = 8.8
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 107 LDRGVSVVICNGMQKEAIKQIVAGRKI 133
+ V+ +IC + +E K+ +I
Sbjct: 53 VKENVNAIICKNISEENYKKFSKKIEI 79
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 28.6 bits (65), Expect = 2.7
Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 3/27 (11%)
Query: 392 LADLLISKQADLLDANSKDLSDATKNG 418
L + +L N D G
Sbjct: 153 LRERAEKMGQNL---NRIPYKDTFWKG 176
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET:
LYS; 2.54A {Synechocystis}
Length = 600
Score = 29.5 bits (67), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYT 61
D+ A LAA ++AD + +DV GI T
Sbjct: 156 DTSAVALAAALKADFCEIYTDVPGILT 182
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 29.1 bits (66), Expect = 3.4
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 290 SQHIPVLGHAEG--ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+ + V+ I + + ++AI A V++ L R + N+A
Sbjct: 11 REDMDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAK 67
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 28.8 bits (65), Expect = 4.6
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
++ + DL + I ++ + V + + Q P HA + A + +AI
Sbjct: 51 QKALKDLKGQTEAIPCVV---GDEEVWTSDIQYQLSPF-NHAHKVAKFCYADKALLNRAI 106
Query: 318 KIARSGSRVLQGLNPEDRAKAIYNLAD 344
A + + DRA+ AD
Sbjct: 107 DAALAARKEWDLKPMADRAQVFLKAAD 133
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 27.5 bits (61), Expect = 4.9
Identities = 6/46 (13%), Positives = 18/46 (39%)
Query: 291 QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRA 336
H+P+ +G+ +V++ + +A ++ G +
Sbjct: 64 LHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIGKHDALGN 109
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H
3o58_H 3o5h_H 3u5e_G 3u5i_G
Length = 256
Score = 28.4 bits (62), Expect = 5.0
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 292 HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337
+P L G+ + V A + + S L + ED A
Sbjct: 165 FLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAA 210
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 28.5 bits (64), Expect = 5.0
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 65 WEEGAKMIWTYTSEMRDTVQFG 86
W + +++ E+RDT ++G
Sbjct: 251 WSYDYGIKYSFAFELRDTGRYG 272
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 28.1 bits (63), Expect = 5.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 65 WEEGAKMIWTYTSEMRDTVQFG 86
W + +++T E+RDT ++G
Sbjct: 257 WSYNQGIKYSFTFELRDTGRYG 278
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 28.2 bits (63), Expect = 6.7
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 65 WEEGAKMIWTYTSEMRDTVQFG 86
W + +++T E+RD ++G
Sbjct: 255 WAYDQGIKYSFTFELRDKGRYG 276
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 28.3 bits (64), Expect = 6.8
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
E + + D KAI A+ + + +P +R + + +
Sbjct: 52 EACAVISLGSTRDADKAINAAKKAFQTWKTTSPHERLGFVEKILE 96
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA
binding protein/structural protein complex; HET: EPE;
1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1
PDB: 1ra4_A* 1sds_A 3paf_A
Length = 120
Score = 26.8 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 287 QQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337
++ H+P L +GI + YV D+ KA + + S V +N D +
Sbjct: 58 EEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAI-INEGDAEE 107
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 27.9 bits (63), Expect = 8.1
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 300 EGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
E I V AD+ KA++ A + + ++R + +
Sbjct: 34 EVIGKVAKGNKADVDKAVEAADDVYLEFRHTSVKERQALLDKIVK 78
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 27.8 bits (62), Expect = 8.6
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 65 WEEGAKMIWTYTSEMRDTVQFG 86
W + +++T E+RD ++G
Sbjct: 258 WIYDLGIKYSFTFELRDKGKYG 279
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 27.9 bits (62), Expect = 9.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 65 WEEGAKMIWTYTSEMRDTVQFG 86
W + + +T E+RDT +G
Sbjct: 352 WAYDNGIKFAFTFELRDTGTYG 373
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP,
RNA binding protein; NMR {Saccharomyces cerevisiae} PDB:
2lbx_A
Length = 121
Score = 26.4 bits (58), Expect = 9.5
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 292 HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337
HIPVL + ++++ D+ A R S V +
Sbjct: 54 HIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKD 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,697,952
Number of extensions: 407397
Number of successful extensions: 1328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1271
Number of HSP's successfully gapped: 130
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)