RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11677
(462 letters)
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni
[TaxId: 197]}
Length = 250
Score = 70.5 bits (171), Expect = 2e-14
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW---EEGAKMIWTYTSEMRDTVQFGQK 88
DNDSL+A ADLL+++SD++G Y K P + T+ E
Sbjct: 139 GDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTG 198
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRK--IGTFF 137
S+ GTGG+ +K+ +A + L+ + + +G K + K GT F
Sbjct: 199 SEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249
Score = 38.1 bits (87), Expect = 0.001
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRK--IGTFF 201
+ + +A + L+ + + +G K + K GT F
Sbjct: 206 IVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 71.4 bits (174), Expect = 5e-14
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R +L+ ++ E R+ +Y + D L + + +AN DL+ A + G+A LL RL L
Sbjct: 13 RKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLF 72
Query: 431 PS-KLKSLSTGLKQIAESSH 449
K + + G+K +AE
Sbjct: 73 KGDKFEVMLQGIKDVAELED 92
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 66.0 bits (160), Expect = 5e-13
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
D+ AA+LA I+AD+ I ++V+G+Y+ P + + + + S + +
Sbjct: 111 FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS 170
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
S + + +A + + G E I + V G +GT
Sbjct: 171 SAKAGTNVVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGT 216
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus
pyogenes [TaxId: 1314]}
Length = 238
Score = 62.3 bits (150), Expect = 1e-11
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
+ + A A +L+ + V+G+Y P ++ + + + G+ K G
Sbjct: 140 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELT-------HGEVIKRG 192
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139
M ++T ++D + +V+ N + I+++V G IGT ++
Sbjct: 193 LKIM--DATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237
Score = 41.2 bits (95), Expect = 1e-04
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 203
++T ++D + +V+ N + I+++V G IGT ++
Sbjct: 198 ATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus
influenzae [TaxId: 727]}
Length = 236
Score = 61.9 bits (149), Expect = 2e-11
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 11 QHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAK 70
+ + DS A + EI+AD+++ + V+G+Y P +
Sbjct: 118 AIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDA 177
Query: 71 MIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAG 130
++ S + +++ T A D G+ + + N + A++Q+V G
Sbjct: 178 KLYKNLSYAE---------VIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTG 228
Query: 131 RKIGT 135
+ GT
Sbjct: 229 TEEGT 233
Score = 38.0 bits (87), Expect = 0.001
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 166 SATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
+ T A D G+ + + N + A++Q+V G + GT
Sbjct: 200 AFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGT 233
>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria
meningitidis [TaxId: 487]}
Length = 236
Score = 60.8 bits (146), Expect = 3e-11
Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 12 HFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM 71
++ D+ AA+ AE+ D+++ ++V+G+YT P ++ +
Sbjct: 118 IQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSAT 177
Query: 72 IWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR 131
+ + F + MD+ + +R +++V+ ++ ++K+++ G
Sbjct: 178 RYETIT-------FDEALLKNLKVMDAT--AFALCRERKLNIVVFGIAKEGSLKRVITGE 228
Query: 132 KIGTFF 137
GT
Sbjct: 229 DEGTLV 234
Score = 38.9 bits (89), Expect = 6e-04
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 166 SATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
+ +R +++V+ ++ ++K+++ G GT
Sbjct: 199 AFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 234
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 61.6 bits (148), Expect = 7e-11
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R VL+ ++ KAI +A+ L ++ ++L+AN D+ A + GV + L+ RL+L
Sbjct: 11 REAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALN 70
Query: 431 PSKLKSLSTGLKQIAESSH 449
++ + + +
Sbjct: 71 DKRIDEMIKACETVIGLKD 89
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 59.2 bits (142), Expect = 2e-10
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
++ D D + LA + AD L++++ V+ + + ++ +E+ + + Q
Sbjct: 203 EAVIDKDFASEKLAELVDADALVILTGVDYVCINYGKPDEKQLTNVTVAELEE---YKQA 259
Query: 89 SKVGTGGMDSKVNSATWALDRGV--SVVICNGMQKEAIKQIVAGRKIGT 135
G M K+ +A ++ +I + E + + +GT
Sbjct: 260 GHFAPGSMLPKIEAAIQFVESQPNKQAIITSL---ENLGSMSGDEIVGT 305
>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus
furiosus [TaxId: 2261]}
Length = 225
Score = 56.6 bits (135), Expect = 8e-10
Identities = 20/107 (18%), Positives = 45/107 (42%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
D++AA+LA ++ADLL+++++V+G+YT P ++ G+ +
Sbjct: 117 GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIE 176
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
+A G+ ++ + + +++ G GT
Sbjct: 177 KAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
Score = 38.9 bits (89), Expect = 7e-04
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 167 ATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
A G+ ++ + + +++ G GT
Sbjct: 189 AKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli
[TaxId: 562]}
Length = 258
Score = 56.3 bits (134), Expect = 1e-09
Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 4/140 (2%)
Query: 1 MFGHTTRLCEQHFLTNFNELFRS--IFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNG 58
GH + L I + D L + A + L +
Sbjct: 118 ELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLI 177
Query: 59 IYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICN 117
+ + K Q + + T GM KVN+A A V I +
Sbjct: 178 LLSDVSGILDGKGQRIAEMTAAKAEQL-IEQGIITDGMIVKVNAALDAARTLGRPVDIAS 236
Query: 118 GMQKEAIKQIVAGRKIGTFF 137
E + + G +GT
Sbjct: 237 WRHAEQLPALFNGMPMGTRI 256
Score = 34.0 bits (76), Expect = 0.029
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 160 MEILVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFF 201
M + VN+A A V I + E + + G +GT
Sbjct: 214 MIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRI 256
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 313
Score = 55.3 bits (132), Expect = 4e-09
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D LA E+ AD+ ++++DVNG E+ + E+R ++ ++
Sbjct: 213 DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELR---KYYEEGHFK 269
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFF 137
G M KV +A ++ G +I + E + + G K GT
Sbjct: 270 AGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQV 311
>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 282
Score = 49.4 bits (117), Expect = 3e-07
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
+ D+ AA +A + A+ LIL++DV+G+ ++ D + +
Sbjct: 176 SYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDGKL---------ISTLTPDEAEELIR 226
Query: 89 SKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTD 139
TGGM KV A A+ GV V I NG + AI +I + + IGT +
Sbjct: 227 DGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 48.7 bits (115), Expect = 6e-07
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMD 97
AA +A + A+ L++++D++G+YT+ P + DT Q GM
Sbjct: 194 AAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVS-------EIDTGTLAQLLPTLELGMV 246
Query: 98 SKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGT 135
KV + A+ GV S I +G + ++ GT
Sbjct: 247 PKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGT 286
>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 300
Score = 48.2 bits (114), Expect = 9e-07
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
+ D +A +A ++A+ L+L++++ G+ K ++ + V
Sbjct: 192 SYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQ-----VLTGL---STEQVNELIA 243
Query: 89 SKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTD 139
GGM K+ A A+ GV S I +G A+ +I +GT ++
Sbjct: 244 DGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 37.7 bits (87), Expect = 0.002
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 226 NTTVPKKHAKTSQC-KYFTKMLPRYPLHSQV-----STREEISDLLSMEKHIDLIIPRGS 279
NT V K +T + ++ V +S +D + GS
Sbjct: 181 NTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGS 240
Query: 280 SDLVRSIQQ---KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSG 323
+++ + I++ KS V G V DAD+ A++ A G
Sbjct: 241 TEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQG 287
Score = 28.1 bits (62), Expect = 2.7
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQG---LNPEDRAKAIYNLAD 344
+C V D+ KA+K AR ++ ++ +R + + LAD
Sbjct: 42 LCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLAD 87
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 35.8 bits (82), Expect = 0.011
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 226 NTTVPKKHAKTSQC-KYFTKMLPRYPLHSQV-----STREEISDLLSMEKHIDLIIPRGS 279
N V K +T Y ++ V ++ + +D + GS
Sbjct: 181 NVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGS 240
Query: 280 SDLVRSIQQKSQH---IPVLGHAEGICHVYVDKDADIRKAI 317
+++ R IQ + V G + DAD+ A+
Sbjct: 241 TEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAV 281
Score = 28.1 bits (62), Expect = 2.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQG---LNPEDRAKAIYNLAD 344
IC V D+ KA+K AR+ ++ ++ R + + LAD
Sbjct: 42 ICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLAD 87
Score = 26.9 bits (59), Expect = 5.3
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
++ R + + LADL+ + L + D
Sbjct: 73 MDASHRGRLLNRLADLIERDRTYLAALETLD 103
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 35.6 bits (81), Expect = 0.012
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+ V ++ A+ + L+ +RA ++ +AD
Sbjct: 30 LGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVAD 72
Score = 29.1 bits (64), Expect = 1.2
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
L+ +RA ++ +AD+L+ + + SK+
Sbjct: 58 LSYIERAAYLHKVADILMRDKEKIGAILSKE 88
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 34.9 bits (79), Expect = 0.019
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 298 HAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348
+E + A+ A++ A + + EDR++ + A
Sbjct: 61 PSEVVGTTAKAGKAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRR 111
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 34.3 bits (77), Expect = 0.033
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 310 DADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+ ++ +A A +R + LN RA + +A
Sbjct: 25 EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIAS 59
Score = 30.8 bits (68), Expect = 0.34
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
LN RA + +A L ++ D++ +
Sbjct: 45 LNNSKRASLLRTIASELEARSDDIIARAHLE 75
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 34.0 bits (77), Expect = 0.036
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 289 KSQHIPVLGHAEG--ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+ + PV A G + + + A++ A + P+ RA+ + LAD
Sbjct: 15 EGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLAD 72
Score = 28.6 bits (63), Expect = 1.6
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
P+ RA+ + LAD++ + S++
Sbjct: 58 TTPKVRAECLLKLADVIEENGQVFAELESRN 88
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 33.9 bits (77), Expect = 0.039
Identities = 5/43 (11%), Positives = 19/43 (44%)
Query: 302 ICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344
+C + ++ +A++ A++ + +R++ + A
Sbjct: 49 LCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAAR 91
Score = 27.4 bits (60), Expect = 4.7
Identities = 2/31 (6%), Positives = 14/31 (45%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKD 410
+ +R++ + A ++ ++ ++ +
Sbjct: 77 MAGIERSRVMLEAARIIRERRDNIAKLEVIN 107
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 29.9 bits (66), Expect = 0.70
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 302 ICHVYVDKDADIRKAIKIAR-SGSRVLQGLNPEDRAKAIYNLAD 344
I V ++ + + + G + + +R + AD
Sbjct: 43 IAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAAD 86
Score = 27.2 bits (59), Expect = 5.2
Identities = 3/32 (9%), Positives = 10/32 (31%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKDL 411
+ +R + AD++ + +
Sbjct: 72 MPGTERLAVLRKAADIIERNLDVFAEVLVMNA 103
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 29.8 bits (66), Expect = 0.72
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 8/129 (6%)
Query: 177 VVIC---NGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEIWKNETLNTTVPKKH 233
+ + E I ++ K T S + + ++L + ++E T P+
Sbjct: 339 ICFVSEVGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDG 398
Query: 234 AKTSQCKYFT-KMLPRYPLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQH 292
Y + + PL E D L K + R S + ++
Sbjct: 399 KSFLCDNYISIDTIKEEPLSK----EETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVI 454
Query: 293 IPVLGHAEG 301
+ + +
Sbjct: 455 LNLQSLVDQ 463
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 29.2 bits (64), Expect = 1.2
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGS 324
+++ D I+ GS+ + + + + PV G YVDKD D+ A + G
Sbjct: 175 LKERFDHIMYTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGK 234
Query: 325 RVLQG 329
+ G
Sbjct: 235 FMNSG 239
Score = 28.8 bits (63), Expect = 1.7
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 380 LNPEDRAKAIYNLADLLISKQADLLDANSKDL 411
+ + R + + L ++ + A + DL
Sbjct: 19 RSLQFRIQQLEALQRMINENLKSISGALASDL 50
>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 27.9 bits (62), Expect = 1.3
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 66 EEGAKMIWTYTSEMRDTV---QFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKE 122
+ G S +R+ + G++ G+D++ + D I G +K
Sbjct: 44 QNGDSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKN 103
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein,
PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (62), Expect = 1.6
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 279 SSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLN 331
R++Q H+ LG + + + +D + + +G+ N
Sbjct: 44 CQQQARNVQ--HYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGHLWN 94
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 28.3 bits (62), Expect = 2.1
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 274 IIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPE 333
++P G S VR+ + V + + + D D + I + + G
Sbjct: 16 LMPGGVSSPVRAFKSVGGQPIVFDRVKD-AYAW---DVDGNRYIDYVGTWGPAICGHAHP 71
Query: 334 DRAKAIYNLADQG 346
+ +A+ ++G
Sbjct: 72 EVIEALKVAMEKG 84
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 26.8 bits (59), Expect = 3.0
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 289 KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341
H+P+L + + +V+V + +A ++R + + K
Sbjct: 62 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQ 114
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 26.6 bits (59), Expect = 3.2
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 311 ADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343
D R +KI + R + +Y L
Sbjct: 52 NDERLGVKILTD----IYKEAESRRRECLYYLT 80
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 26.2 bits (58), Expect = 3.3
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRK-- 315
+++ L E+ +D L+ + + + ++ + +V D+R
Sbjct: 7 TQDLRQLQESEQQLD--------HLMNICTTQLRLLSEDTDSQRLAYV---TCQDLRSIA 55
Query: 316 --------AIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDV 350
IK A ++ LQ ++ + + I + QG +DV
Sbjct: 56 DPAEQMVMVIK-APPETQ-LQAVDSSENFQ-ISLKSKQGPIDV 95
>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 212
Score = 27.1 bits (60), Expect = 4.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 127 IVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKMEILVN 165
+ G KI F + +G P+EV N+N+ I V
Sbjct: 112 LCLGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVY 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,571,523
Number of extensions: 71374
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 48
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)