BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11678
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 28 FDKEKQDVVKVYAGPNLTKKLTFGPPPAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGS 87
D + + VK++AGP LTF P KS++TEYG LE IEVV ++Q+A+DHIH YGS
Sbjct: 302 IDXLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGS 361
Query: 88 SHTDVI 93
SHTDVI
Sbjct: 362 SHTDVI 367
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 11/64 (17%)
Query: 110 EVVGDLQEAVDHI----------HTYGSSHTDV-IVTENARDSKCDYPAACNAMETLLIH 158
++V D+Q+A I H Y S V VT RDSKC+YPAACNA+ETLLIH
Sbjct: 230 QLVRDIQKAAKGIPVXGHSEGICHXYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIH 289
Query: 159 EDHM 162
D +
Sbjct: 290 RDLL 293
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 99 KTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIVTEN 137
+TEY + AI++V + A++HI+ YGS HTD IVTE+
Sbjct: 337 RTEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAIVTED 375
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 59 KTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVI 93
+TEY + AI++V + A++HI+ YGS HTD I
Sbjct: 337 RTEYLAPVLAIKIVDGIDAAIEHINEYGSHHTDAI 371
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 100 TEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIVTENARDSK 142
TEY L AI+VV ++ EA++HI Y + H++ I+TEN ++K
Sbjct: 321 TEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAK 363
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 52 PPPAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVI 93
P TEY L AI+VV ++ EA++HI Y + H++ I
Sbjct: 313 PATEDDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESI 354
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 140 DSKCDYPAACNAMETLLIHE 159
++K P CNA E LL+HE
Sbjct: 258 NAKTQRPGTCNAAEKLLVHE 277
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 40 AGPNLTKKLTFGPPPAKSMKT-EYGSLECAIEV--VGDLQEA-VDHIHTYGSSHTDVISA 95
AG N + L P +K + E +LE + + DL+ A D ++ G T+ I
Sbjct: 268 AGCNAXETLLINPKFSKWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGK-LTEAIQC 326
Query: 96 KSMKT--------EYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIVTEN 137
K++ E+ SL+ A + V + A+ HI+T+ S HTD IVTEN
Sbjct: 327 KTVDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTEN 376
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 140 DSKCDYPAACNAMETLLIH 158
D+K +YPA CNA ETLLI+
Sbjct: 261 DAKTNYPAGCNAXETLLIN 279
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 71 VVGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECA-IEVVGDLQEAVDHIHTYGSSH 129
++ ++ + +D++H+ H D+ +A + +E+G ++ A V G L + +T+ +
Sbjct: 109 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTP 168
Query: 130 TDV---IVTENARDSKCD-YPAACNAME 153
+ ++ ++A DSK D + A+E
Sbjct: 169 FWMAPEVIKQSAYDSKADIWSLGITAIE 196
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 71 VVGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECA-IEVVGDLQEAVDHIHTYGSSH 129
++ ++ + +D++H+ H D+ +A + +E+G ++ A V G L + +T+ +
Sbjct: 129 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTP 188
Query: 130 TDV---IVTENARDSKCD-YPAACNAME 153
+ ++ ++A DSK D + A+E
Sbjct: 189 FWMAPEVIKQSAYDSKADIWSLGITAIE 216
>pdb|2V0O|A Chain A, Fcho2 F-Bar Domain
pdb|2V0O|B Chain B, Fcho2 F-Bar Domain
pdb|2V0O|C Chain C, Fcho2 F-Bar Domain
Length = 276
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 21/89 (23%)
Query: 67 CAIEVVGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYG 126
C +++V LQE + + YG V S K K EV G L EAV I +
Sbjct: 88 CHLDLVRKLQELIKEVQKYGEEQ--VKSHKKTKE---------EVAGTL-EAVQTIQS-- 133
Query: 127 SSHTDVIVTENARDSKCDYPAACNAMETL 155
+T+ + SK +Y A C E L
Sbjct: 134 -------ITQALQKSKENYNAKCVEQERL 155
>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YW2|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
In Complex With Atp
pdb|2YYA|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
pdb|2YYA|B Chain B, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus
Length = 424
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 36 VKVYAGPNL-TKKLTFGPPPAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIS 94
+K++ GPN KL AK+ +YG EV D ++A +++ G+ V+
Sbjct: 87 LKIF-GPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVGAPI--VVK 143
Query: 95 AKSMKTEYGSLECAIEVVGDLQEAVDHI---HTYGSSHTDVIVTENARDSKCDYPAACNA 151
A + G++ C E V E +D +G S V++ E + Y N
Sbjct: 144 ADGLAAGKGAVVC--ETVEKAIETLDRFLNKKIFGKSSERVVIEEFLEGEEASYIVMING 201
>pdb|3R2V|A Chain A, Crystal Structure Of Polymerase Basic Protein 2 E538-R753
From Influenza A Virus AYOKOHAMA201703 H3N2
Length = 216
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 10 KNPQMQYSK--FSPGHNL---------SGFDK----EKQDVVKVYAGPNLTKKLTFGPPP 54
+NP M Y+K F P +L SGF + + +DV+ + + K L F P
Sbjct: 29 QNPAMLYNKMEFEPFQSLVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAP 88
Query: 55 AKSMKTEYGSLECAIE 70
K + ++ SL +
Sbjct: 89 PKQSRMQFSSLTVNVR 104
>pdb|2VY6|A Chain A, Two Domains From The C-Terminal Region Of Influenza A
Virus Polymerase Pb2 Subunit
Length = 217
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 15/76 (19%)
Query: 10 KNPQMQYSK--FSPGHNL---------SGFDK----EKQDVVKVYAGPNLTKKLTFGPPP 54
+NP M Y+K F P +L SGF + + +DV+ + + K L F P
Sbjct: 30 QNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAP 89
Query: 55 AKSMKTEYGSLECAIE 70
K + ++ SL +
Sbjct: 90 PKQSRMQFSSLTVNVR 105
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 71 VVGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECA-IEVVGDLQEAVDHIHTYGSSH 129
++ ++ + +D++H+ H D+ +A + +E G ++ A V G L + +T+ +
Sbjct: 125 MLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTP 184
Query: 130 TDV---IVTENARDSKCD-YPAACNAME 153
+ ++ ++A DSK D + A+E
Sbjct: 185 FWMAPEVIQQSAYDSKADIWSLGITAIE 212
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 71 VVGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECA-IEVVGDLQEAVDHIHTYGSSH 129
++ ++ + +D++H+ H D+ +A + +E+G ++ A V G L + + + +
Sbjct: 109 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTP 168
Query: 130 TDV---IVTENARDSKCD-YPAACNAME 153
+ ++ ++A DSK D + A+E
Sbjct: 169 FWMAPEVIKQSAYDSKADIWSLGITAIE 196
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 71 VVGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECA-IEVVGDLQEAVDHIHTYGSSH 129
++ ++ + +D++H+ H D+ +A + +E+G ++ A V G L + + + +
Sbjct: 124 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTP 183
Query: 130 TDV---IVTENARDSKCD-YPAACNAME 153
+ ++ ++A DSK D + A+E
Sbjct: 184 FWMAPEVIKQSAYDSKADIWSLGITAIE 211
>pdb|3MJ9|L Chain L, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
pdb|3MJ8|L Chain L, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
pdb|3MJ8|A Chain A, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
Length = 213
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 36 VKVYAGPNLTKKLTFGPPPAKSMKTEYGSLECAI 69
V V PN +T PP ++ +KT +L C I
Sbjct: 105 VTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMI 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,219,749
Number of Sequences: 62578
Number of extensions: 196807
Number of successful extensions: 605
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 34
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)