RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11678
(165 letters)
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 78.0 bits (193), Expect = 1e-17
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 36 VKVYAGPNLTKKLTFGPPPAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVI 93
VK++AGP LTF P KS++TEYG LE IEVV ++Q+A+DHIH YGSSHTDVI
Sbjct: 310 VKIHAGPKFASYLTFSPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVI 367
Score = 78.0 bits (193), Expect = 1e-17
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 94 SAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIVTEN 137
KS++TEYG LE IEVV ++Q+A+DHIH YGSSHTDVIVTE+
Sbjct: 328 EVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTED 371
Score = 52.2 bits (126), Expect = 8e-09
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 138 ARDSKCDYPAACNAMETLLIHED 160
RDSKC+YPAACNA+ETLLIH D
Sbjct: 269 VRDSKCEYPAACNALETLLIHRD 291
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 72.3 bits (178), Expect = 1e-15
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 100 TEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIVTEN 137
E+ SL+ A + V + A+ HI+T+ S HTD IVTEN
Sbjct: 339 KEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTEN 376
Score = 63.0 bits (154), Expect = 2e-12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 60 TEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVI 93
E+ SL+ A + V + A+ HI+T+ S HTD I
Sbjct: 339 KEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAI 372
Score = 49.9 bits (120), Expect = 6e-08
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 138 ARDSKCDYPAACNAMETLLIHED 160
+ D+K +YPA CNAMETLLI+
Sbjct: 259 SLDAKTNYPAGCNAMETLLINPK 281
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 68.3 bits (168), Expect = 2e-14
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 100 TEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVIVTEN 137
TEY L AI+VV ++ EA++HI Y + H++ I+TEN
Sbjct: 321 TEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTEN 358
Score = 59.5 bits (145), Expect = 3e-11
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 60 TEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDVI 93
TEY L AI+VV ++ EA++HI Y + H++ I
Sbjct: 321 TEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESI 354
Score = 41.8 bits (99), Expect = 4e-05
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 16/47 (34%)
Query: 114 DLQEAVDHIHTYGSSHTDVIVTENARDSKCDYPAACNAMETLLIHED 160
DL++AV V NA K P CNA E LL+HE
Sbjct: 248 DLKKAVP-------------VIINA---KTQRPGTCNAAEKLLVHEK 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 4e-04
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 22/88 (25%)
Query: 75 LQEAVDHIHTYGSSHTDVISAKSMK-----TEYGSLECAIEVVGDLQEAVDHIHTYGSSH 129
L A D I+ + +AK ++ T GS DL+ I
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS---------DLRVLSGSI---SERI 479
Query: 130 TDVIVTENARDSKCDYPAACNAMETLLI 157
D I+ + T ++
Sbjct: 480 VDCIIRLP-----VKWETTTQFKATHIL 502
Score = 35.4 bits (81), Expect = 0.007
Identities = 43/215 (20%), Positives = 59/215 (27%), Gaps = 99/215 (46%)
Query: 1 MSLYSSS-------------------------LNKNPQMQYSKFSP--GH----NLSGFD 29
M LY +S + NP F G N S
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 30 KE-----KQDVVKVYAGPNL-TKKLTFGPP-----------PA---------KSMKT--- 60
E K K++ N + TF PA + +K+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 61 -------------EYG---------SLECAIEVV---GDL-QEAVDHIHTYGSSHTDVIS 94
EY S+E +EVV G Q AV G S+ +I+
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR-DELGRSNYGMIA 1811
Query: 95 ------AKSMKTEYGSLECAIEVV----GDLQEAV 119
A S E +L+ +E V G L E V
Sbjct: 1812 INPGRVAASFSQE--ALQYVVERVGKRTGWLVEIV 1844
Score = 28.9 bits (64), Expect = 0.92
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 91 DVISAKSMKTEYGSLECAIEV 111
D S + + +GSLE + V
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLV 22
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.007
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 18/42 (42%)
Query: 31 EKQDV------VKVYAGPNLTKKLTFGPPPAKSMKTEYGSLE 66
EKQ + +K+YA + PA ++K ++E
Sbjct: 18 EKQALKKLQASLKLYA-DD--------SAPALAIK---ATME 47
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 27.4 bits (61), Expect = 2.3
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 11/52 (21%)
Query: 41 GPNLTKKLTFGPPPAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDV 92
G +L + P P AI + L A D H G + +
Sbjct: 115 GGSLQEVADTSPSPVG-----------AIRAMQSLAAAADAAHRAGVALSID 155
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 26.5 bits (59), Expect = 5.0
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 61 EYG-SLEC----AIEVVGDLQEAV--DHIHTYGSSHTDVISAKSMKTEYG-SLECAIEVV 112
EYG SLE E++ D + I+ + + G + E V+
Sbjct: 198 EYGGSLENRMRLLRELLEDTLDECAGRAAVACR------ITVEEE-IDGGITREDIEGVL 250
Query: 113 GDLQEAVDHIHTYGSSHTDVIVT 135
+L E D S VT
Sbjct: 251 RELGELPDLWDFAMGSWEGDSVT 273
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 26.1 bits (57), Expect = 5.7
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 73 GDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECAIEVVGDLQEAVDHIHTYGSSHTDV 132
+LQ + + ++ S+H + + L+ ++V+ + +H YG HT +
Sbjct: 184 SNLQTFGEVLLSHSSTHKSL-------VHHARLQLTLQVI----RLLASLHHYGLVHTYL 232
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 25.1 bits (55), Expect = 6.8
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 72 VGDLQEAVDHIHTYGSSHTDVISAKSMKTEYGSLECAIEVV 112
VGD E+++ + G H DV +K ++++
Sbjct: 49 VGDHIESINGENIVGWRHYDVAKK--LKELKKEELFTMKLI 87
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 25.5 bits (57), Expect = 8.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 117 EAVDHIHTYGSSHTDVIVTE 136
EA+D + SSH + V E
Sbjct: 149 EAIDRLRDTSSSHQRISVVE 168
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding,
metalloprotease, protease, zinc; 2.90A {Bacillus
subtilis}
Length = 501
Score = 25.6 bits (55), Expect = 9.8
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 57 SMKTEYGSLECAIEVVGDLQEAVD----HIHTYGSSHT 90
M + + +E G+ +H +G
Sbjct: 433 KMLEDLPEFDALLER-GEFHPIKQWLTEKVHIHGKRKK 469
Score = 25.6 bits (55), Expect = 9.8
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 97 SMKTEYGSLECAIEVVGDLQEAVD----HIHTYGSSHT 130
M + + +E G+ +H +G
Sbjct: 433 KMLEDLPEFDALLER-GEFHPIKQWLTEKVHIHGKRKK 469
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.373
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,461,065
Number of extensions: 138696
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 28
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (23.9 bits)