RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11679
         (78 letters)



>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase.  This
           protein contains a glutamate 5-kinase (ProB, EC
           2.7.2.11) region followed by a gamma-glutamyl phosphate
           reductase (ProA, EC 1.2.1.41) region [Amino acid
           biosynthesis, Glutamate family].
          Length = 715

 Score = 78.4 bits (193), Expect = 7e-19
 Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHVASEFAEGGPCTFVHEHLPI 77
           AEVGIST+RIHARGPVGVEGLLTT+W+L G G V S   + G   + H+ LPI
Sbjct: 661 AEVGISTSRIHARGPVGVEGLLTTRWLLRGKGQVVS--GDHG-LVYTHKDLPI 710


>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
          Length = 718

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 5/54 (9%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHVASEFAEGGP-CTFVHEHLPI 77
           AEVGIST RIHARGPVGVEGLLTT+W+L G+G V     +G     + H+ LP+
Sbjct: 667 AEVGISTGRIHARGPVGVEGLLTTRWILRGNGQV----VDGDKGVVYTHKDLPL 716


>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
          Length = 417

 Score = 72.4 bits (179), Expect = 8e-17
 Identities = 19/34 (55%), Positives = 28/34 (82%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHV 58
           AE+GIST ++HARGP+G+E L T K+++ GDG +
Sbjct: 382 AEIGISTQKLHARGPMGLEELTTYKYIVLGDGQI 415


>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
           transport and metabolism].
          Length = 417

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHVAS 60
           AE+GIST ++HARGP+G+E L + K+++ GDG V  
Sbjct: 382 AEIGISTQKLHARGPMGLEALTSYKYIVRGDGQVRP 417


>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
           (GPR), aldehyde dehydrogenase families 18 and 19.
           Gamma-glutamyl phosphate reductase (GPR), a L-proline
           biosynthetic pathway (PBP) enzyme that catalyzes the
           NADPH dependent reduction of L-gamma-glutamyl
           5-phosphate into L-glutamate 5-semialdehyde and
           phosphate. The glutamate route of the PBP involves two
           enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
           EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
           fused into the bifunctional enzyme, ProA or
           delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
           plants and animals, whereas they are separate enzymes in
           bacteria and yeast. In humans, the P5CS (ALDH18A1), an
           inner mitochondrial membrane enzyme, is essential to the
           de novo synthesis of the amino acids proline and
           arginine. Tomato (Lycopersicon esculentum) has both the
           prokaryotic-like polycistronic operons encoding GK and
           GPR (PRO1, ALDH19) and the full-length, bifunctional
           P5CS (PRO2, ALDH18B1).
          Length = 406

 Score = 68.2 bits (168), Expect = 2e-15
 Identities = 18/31 (58%), Positives = 26/31 (83%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGD 55
           AE+GIST ++HARGP+G+E L T K+++ GD
Sbjct: 376 AEIGISTQKLHARGPMGLEELTTYKYIVRGD 406


>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase.  The related
           model TIGR01092 describes a full-length fusion protein
           delta l-pyrroline-5-carboxylate synthetase that includes
           a gamma-glutamyl phosphate reductase region as described
           by this model. Alternate name: glutamate-5-semialdehyde
           dehydrogenase. The prosite motif begins at residue 332
           of the seed alignment although not all of the members of
           the family exactly obey the motif [Amino acid
           biosynthesis, Glutamate family].
          Length = 398

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTK 49
           AEVGIST ++HARGP+G+E L + K
Sbjct: 374 AEVGISTQKLHARGPMGLEALTSYK 398


>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
           (ALDH-like) family.  The aldehyde dehydrogenase-like
           (ALDH-like) group of the ALDH superfamily of
           NAD(P)+-dependent enzymes which, in general, oxidize a
           wide range of  endogenous and exogenous aliphatic and
           aromatic aldehydes to their corresponding carboxylic
           acids and play an  important role in detoxification.
           This group includes families ALDH18, ALDH19, and ALDH20
           and represents such proteins as gamma-glutamyl phosphate
           reductase, LuxC-like acyl-CoA reductase, and coenzyme A
           acylating aldehyde dehydrogenase.  All of these proteins
           have a conserved cysteine that aligns with the catalytic
           cysteine of the ALDH group.
          Length = 397

 Score = 33.0 bits (75), Expect = 0.007
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 19  AGLPERAEVGISTARIHARG-PVGVEGLLTTKWVL 52
           A   +  E  +++   +  G  VG + L   K ++
Sbjct: 362 AFAGKGVERIVTSGMNNIFGAGVGHDALRPLKRLV 396


>gnl|CDD|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.
          Length = 552

 Score = 26.9 bits (61), Expect = 0.83
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 56  GHVASEFAEGGPCTFVHE 73
           GHV+ E A GGP   V +
Sbjct: 475 GHVSPEAAVGGPIALVED 492


>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase.  This protein,
           dihydroxy-acid dehydratase, catalyzes the fourth step in
           valine and isoleucine biosynthesis. It contains a
           catalytically essential [4Fe-4S] cluster This model
           generates scores of up to 150 bits vs.
           6-phosphogluconate dehydratase, a homologous enzyme
           [Amino acid biosynthesis, Pyruvate family].
          Length = 535

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 56  GHVASEFAEGGPCTFVHE 73
           GHV+ E AEGGP   V +
Sbjct: 460 GHVSPEAAEGGPIALVED 477


>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy
           production and conversion].
          Length = 293

 Score = 25.6 bits (57), Expect = 3.0
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 22  PERAEVGISTARIHARGPVGV 42
           P   ++GI    I+  G +G+
Sbjct: 130 PGECKIGIMPGNIYKPGNIGI 150


>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
           Provisional.
          Length = 902

 Score = 25.4 bits (56), Expect = 3.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 1   MNTHYQVDLIGTPDQACLAGLPERAEVGISTA 32
           +N+HYQ  L    D A L G+ E +   +++ 
Sbjct: 409 LNSHYQTGLKNLLDTAVLEGVDEESARSLASR 440


>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
          (LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
          Lysophospholipid acyltransferase (LPLAT) superfamily
          member: acyltransferases of de novo and remodeling
          pathways of glycerophospholipid biosynthesis which
          catalyze the incorporation of an acyl group from either
          acylCoAs or acyl-acyl carrier proteins (acylACPs) into
          acceptors such as glycerol 3-phosphate,
          dihydroxyacetone phosphate or lyso-phosphatidic acid.
          Included in this subgroup are the uncharacterized
          DUF374 phospholipid/glycerol acyltransferases and
          similar proteins.
          Length = 189

 Score = 24.9 bits (55), Expect = 4.1
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 45 LLTTKWVLNGDGHVASEFAEGGPC--TFVHEHLP 76
           LT +W + GD    +  A+G P    F H  L 
Sbjct: 5  YLTLRWRVIGDESADALIAQGEPVILAFWHGRLL 38


>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha;
           Validated.
          Length = 291

 Score = 25.1 bits (56), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 22  PERAEVGISTARIHARGPVGV 42
           P   ++GI    IH +G VGV
Sbjct: 130 PGECKIGIMPGHIHKKGRVGV 150


>gnl|CDD|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate
           dehydratase [Amino acid transport and metabolism /
           Carbohydrate transport and metabolism].
          Length = 575

 Score = 24.4 bits (54), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 56  GHVASEFAEGGPCTFVHE 73
           GHV+ E AEGGP   V +
Sbjct: 492 GHVSPEAAEGGPIALVRD 509


>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit;
           Provisional.
          Length = 317

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 22  PERAEVGISTARIHARGPVGV---EGLLT 47
           P   ++GI    IH +G +G+    G LT
Sbjct: 154 PGECKIGIMPGHIHKKGKIGIVSRSGTLT 182


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0853    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,971,921
Number of extensions: 302549
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 21
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)