RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11679
(78 letters)
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 96.1 bits (240), Expect = 1e-25
Identities = 37/54 (68%), Positives = 45/54 (83%)
Query: 25 AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHVASEFAEGGPCTFVHEHLPIN 78
AEVGIST+RIHARGPVG+EGLLTTKW+L G HV S+F+E G ++HE+LPI
Sbjct: 405 AEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPIP 458
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 88.1 bits (219), Expect = 2e-22
Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 25 AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHVASEFAEG-GPCTFVHEHLPIN 78
AEVGIST++IHARGPVG++GL++ ++ + GDG VAS++ G FVH+ L I
Sbjct: 410 AEVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLDIK 464
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 68.3 bits (168), Expect = 1e-15
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 25 AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHV 58
AE+GIST R HARGPVG+ L T K+V+ G+ HV
Sbjct: 392 AEIGISTQRFHARGPVGLRELTTYKFVVLGEYHV 425
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.027
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 2 NTHYQVDLIGTPDQACLAGLPE------------RAEVGISTARI--HARGPVGVEGLL 46
++ L+ ++G P+ +A G+ +RI R L
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding
domain, structural genomics, NPPSFA; 1.70A
{Methanocaldococcus jannaschii}
Length = 294
Score = 26.3 bits (59), Expect = 0.95
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 22 PERAEVGISTARIHARGPVGV 42
P+ ++GI + G VG+
Sbjct: 135 PKVGKLGIIPMEVLKEGSVGM 155
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase,
structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Length = 297
Score = 25.9 bits (58), Expect = 1.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 22 PERAEVGISTARIHARGPVGV 42
P +A+VGI I G V V
Sbjct: 136 PGQAKVGIMPGHIFKEGGVAV 156
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1
PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A*
1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Length = 288
Score = 25.9 bits (58), Expect = 1.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 22 PERAEVGISTARIHARGPVGV 42
P ++GI IH G VG+
Sbjct: 129 PGECKIGIQPGHIHKPGKVGI 149
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial;
active site phosphohistidine residue; HET: NEP GTP;
2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A*
2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Length = 305
Score = 26.0 bits (58), Expect = 1.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 22 PERAEVGISTARIHARGPVGV 42
P ++GI IH +G +G+
Sbjct: 137 PGECKIGIMPGHIHKKGRIGI 157
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8
c.23.4.1
Length = 288
Score = 25.6 bits (57), Expect = 1.6
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 22 PERAEVGISTARIHARGPVGV 42
E ++GI + RG VG+
Sbjct: 129 AEETKIGIMPGHVFKRGRVGI 149
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
alpha-helical, C-terminal domain M beta-sheet
(trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
c.8.2.2 d.334.1.1
Length = 628
Score = 24.8 bits (55), Expect = 3.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 56 GHVASEFAEGGPCTFVHE 73
H+ E +GG V +
Sbjct: 543 IHLTPEAIDGGLIAKVQD 560
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
struc genomics, SAM, S-adenosylmethionine, MCSG; HET:
MSE SAM; 1.60A {Corynebacterium diphtheriae}
Length = 251
Score = 24.9 bits (54), Expect = 3.5
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 10 IGTPDQACLAGLPERAEVGISTARIHARGPVG 41
+GT Q G ++ + R G
Sbjct: 208 LGTEQQVLRKGYVHEIGAQVAELKQQLRTEHG 239
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 23.7 bits (51), Expect = 9.3
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 7 VDLIG-------TPDQACLAGLPERAEVGISTARIHARGPVGV 42
V +IG P G I ++++ G V
Sbjct: 618 VTIIGPATVGGIKPGC-FKIGNTGGMLDNILASKLYRPGSVAY 659
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.438
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,245,163
Number of extensions: 62331
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 14
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)