RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11679
         (78 letters)



>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score = 71.0 bits (173), Expect = 7e-17
 Identities = 23/38 (60%), Positives = 34/38 (89%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHVASEF 62
           AEVGIST++IHARGPVG++GL++ ++ + GDG VAS++
Sbjct: 399 AEVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDY 436


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 55.8 bits (133), Expect = 2e-11
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 25  AEVGISTARIHARGPVGVEGLLTTKWVLNGDGHV 58
           AE+GIST R HARGPVG+  L T K+V+ G+ HV
Sbjct: 379 AEIGISTQRFHARGPVGLRELTTYKFVVLGEYHV 412


>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation
          protein HypC {Shewanella oneidensis [TaxId: 70863]}
          Length = 76

 Score = 22.4 bits (48), Expect = 6.0
 Identities = 5/22 (22%), Positives = 8/22 (36%)

Query: 7  VDLIGTPDQACLAGLPERAEVG 28
          VD +G         + E   +G
Sbjct: 21 VDTLGVRRDVSSHLMTEPLAIG 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,960
Number of extensions: 10357
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)