BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1168
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1
Length = 265
Score = 349 bits (896), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 164/189 (86%), Positives = 179/189 (94%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
QQW+LD+QDLIRER+HDL L++EEYQKIF+FFAN IQ+LGEQLKLRQQVIATATVYFKR
Sbjct: 12 QQWILDKQDLIRERQHDLKNLTEEEYQKIFMFFANVIQVLGEQLKLRQQVIATATVYFKR 71
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYR 135
FYARNSLKCIDPLLLAPTC+ LASKVEEFGVIS+SRL++TCQTV+KNK +YAY QEFPYR
Sbjct: 72 FYARNSLKCIDPLLLAPTCILLASKVEEFGVISNSRLITTCQTVIKNKFSYAYQQEFPYR 131
Query: 136 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLL 195
TNHILECEFYLLENLDCCLIVYQPYRPLLQL+QDIG EDQLL L WR+INDSLRTDV LL
Sbjct: 132 TNHILECEFYLLENLDCCLIVYQPYRPLLQLIQDIGQEDQLLTLTWRLINDSLRTDVSLL 191
Query: 196 YPPYQIAIG 204
YPPYQIAIG
Sbjct: 192 YPPYQIAIG 200
>sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2
Length = 266
Score = 347 bits (891), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 162/189 (85%), Positives = 179/189 (94%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
QQW+LD+QDLIRER+HDL LS+EEYQK+F+FFAN IQ+LGEQLKLRQQVIATATVYFKR
Sbjct: 12 QQWILDKQDLIRERQHDLKTLSEEEYQKLFMFFANIIQVLGEQLKLRQQVIATATVYFKR 71
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYR 135
FYARNSLKCIDPLLLAPTC+ L+SKVEEFGVIS+SRL++TCQTV+KNK +YAY QEFPYR
Sbjct: 72 FYARNSLKCIDPLLLAPTCILLSSKVEEFGVISNSRLITTCQTVIKNKFSYAYQQEFPYR 131
Query: 136 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLL 195
TNHILECEFYLLENLDCCLIVYQPYRPLLQL+QDIG E+QLL L WR+INDSLRTDV LL
Sbjct: 132 TNHILECEFYLLENLDCCLIVYQPYRPLLQLMQDIGQEEQLLTLTWRLINDSLRTDVSLL 191
Query: 196 YPPYQIAIG 204
YPPYQIAIG
Sbjct: 192 YPPYQIAIG 200
>sp|Q29AI1|CCNC_DROPS Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3
SV=1
Length = 267
Score = 339 bits (870), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 157/189 (83%), Positives = 176/189 (93%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
QQW+LD+QDL+RER+HDL L+++EYQK+FIFFAN IQ+LGEQLKLRQQVIATATVYFKR
Sbjct: 12 QQWILDKQDLLRERQHDLLSLNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKR 71
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYR 135
FYARNSLK IDPLLLAPTC+ LASKVEEFGVIS+SRL+S CQ+ +K K +YAY QEFPYR
Sbjct: 72 FYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYTQEFPYR 131
Query: 136 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLL 195
TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQD+G EDQLL L+WR++NDSLRTDVCLL
Sbjct: 132 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLTLSWRIVNDSLRTDVCLL 191
Query: 196 YPPYQIAIG 204
YPPYQIAI
Sbjct: 192 YPPYQIAIA 200
>sp|P25008|CCNC_DROME Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1
Length = 267
Score = 338 bits (867), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 157/189 (83%), Positives = 176/189 (93%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
QQW+LD+ DL+RER+HDL L+++EYQK+FIFFAN IQ+LGEQLKLRQQVIATATVYFKR
Sbjct: 12 QQWILDKPDLLRERQHDLLALNEDEYQKVFIFFANVIQVLGEQLKLRQQVIATATVYFKR 71
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYR 135
FYARNSLK IDPLLLAPTC+ LASKVEEFGVIS+SRL+S CQ+ +K K +YAYAQEFPYR
Sbjct: 72 FYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKFSYAYAQEFPYR 131
Query: 136 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLL 195
TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQD+G EDQLL L+WR++NDSLRTDVCLL
Sbjct: 132 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLTLSWRIVNDSLRTDVCLL 191
Query: 196 YPPYQIAIG 204
YPPYQIAI
Sbjct: 192 YPPYQIAIA 200
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 293 bits (751), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 161/188 (85%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL+S +V+K + +YA+ +EFPYR
Sbjct: 73 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRM 132
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 133 NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY 192
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 193 PPFMIALA 200
>sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1
Length = 283
Score = 293 bits (751), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 161/188 (85%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL+S +V+K + +YA+ +EFPYR
Sbjct: 73 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRM 132
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 133 NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY 192
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 193 PPFMIALA 200
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1
Length = 283
Score = 293 bits (750), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 161/188 (85%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL+S +V+K + +YA+ +EFPYR
Sbjct: 73 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRFSYAFPKEFPYRM 132
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 133 NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY 192
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 193 PPFMIALA 200
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2
Length = 283
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 133/188 (70%), Positives = 161/188 (85%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL++ +V+K + +YA+ +EFPYR
Sbjct: 73 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRM 132
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 133 NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY 192
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 193 PPFMIALA 200
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 291 bits (745), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 133/188 (70%), Positives = 161/188 (85%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL++ +V+K + +YA+ +EFPYR
Sbjct: 73 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAATTSVLKTRFSYAFPKEFPYRM 132
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 133 NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDVLLPLAWRIVNDTYRTDLCLLY 192
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 193 PPFMIALA 200
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1
Length = 283
Score = 290 bits (743), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 131/188 (69%), Positives = 161/188 (85%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL++ +V+K + +YA+ +EFPY+
Sbjct: 73 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYKM 132
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NH+LECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 133 NHVLECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY 192
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 193 PPFMIALA 200
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 274 bits (700), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 154/188 (81%), Gaps = 5/188 (2%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
QW+LD+ ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKRF
Sbjct: 13 QWILDK-----ERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRF 67
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
YAR SLK IDP+L+APTCVFLASKVEEFGV+S++ L++ +V+K + +YA +EFPYR
Sbjct: 68 YARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTSLIAATTSVLKTRFSYASPKEFPYRM 127
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLLY
Sbjct: 128 NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDVLLPLAWRIVNDTYRTDLCLLY 187
Query: 197 PPYQIAIG 204
PP+ IA+
Sbjct: 188 PPFMIALA 195
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1
Length = 255
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 112/188 (59%), Gaps = 10/188 (5%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRF 76
+W+LDR + D L+ E +K+ + IQ LG LKLRQ+ I+TA VYFKRF
Sbjct: 13 EWLLDRNKIEESNPKDKQYLTPIELKKLRTHYCFVIQNLGNALKLRQRAISTAIVYFKRF 72
Query: 77 YARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRT 136
Y +NS +P L+A TC++L+SKVEE I+ ++ C +K F Y
Sbjct: 73 YLKNSFVDCEPRLVAVTCLYLSSKVEE--CITQAK---KCAAKMKE-----IDHSFNYLM 122
Query: 137 NHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLY 196
N ILECEF++LE LD CLI+Y PY+ L +Q G + + + W ++NDS RTDVCLLY
Sbjct: 123 NDILECEFFVLEELDFCLIIYHPYKSLPFYLQSSGLDPASIEIIWGIVNDSYRTDVCLLY 182
Query: 197 PPYQIAIG 204
PP+ + +G
Sbjct: 183 PPFVVGLG 190
>sp|Q9TYP2|CCNC_CAEEL Cyclin-C OS=Caenorhabditis elegans GN=cic-1 PE=3 SV=2
Length = 302
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 24/212 (11%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQ---------LKLRQQVI 66
QQW+ D+ ++ ++R D+ I ++EEY ++ IF+ANFI + + KLRQQVI
Sbjct: 12 QQWIFDKTEIWKQRAEDMKIYNEEEYNRLNIFWANFITAVATEGAHSQANVGCKLRQQVI 71
Query: 67 ATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNY 126
ATA +YFKRFY R S + + P L+A T +FLA KVEE +S S L V+ +
Sbjct: 72 ATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTAIVLPKRWGV 131
Query: 127 AYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALA------ 180
+ + + + + EF L+E LDCCL+V+ RP+ +L++D+ Q +A
Sbjct: 132 TF-ETTSTKNGVVYDSEFILVEILDCCLVVHHASRPMFELLEDLKQFTQQSTIANQPIKD 190
Query: 181 --------WRVINDSLRTDVCLLYPPYQIAIG 204
+V NDSLR DV L++PP+ I +
Sbjct: 191 LEAIEAQCQKVANDSLRCDVSLIFPPHVIGLS 222
>sp|P0C654|CCNC_CAEBR Cyclin-C OS=Caenorhabditis briggsae GN=cic-1 PE=3 SV=1
Length = 298
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 119/214 (55%), Gaps = 24/214 (11%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQL---------KLRQQVI 66
QQW+ D+ ++ ++R D+ S+EEY ++ IF+ANFI + + KLRQQVI
Sbjct: 12 QQWIFDKTEIWKQRAEDMKTYSEEEYSRLNIFWANFITAVATECAHSQANVGCKLRQQVI 71
Query: 67 ATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNY 126
ATA VYFKRFY R S + + P L+A T +FLA KVEE +S S L V+ +
Sbjct: 72 ATAIVYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTALVLPKRWGV 131
Query: 127 AYAQEFPYRTNHIL-ECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHE------------ 173
A+ E N +L + EF L+E LDCCL+V+ RP+ +L++D
Sbjct: 132 AF--ETNSAKNGVLYDSEFILVEILDCCLVVHHATRPMFELLEDWKQHTLTSTNTPVKDF 189
Query: 174 DQLLALAWRVINDSLRTDVCLLYPPYQIAIGECS 207
DQ+ +V+ND+LR DV L++ P+ I + S
Sbjct: 190 DQIEIQCQKVVNDTLRCDVGLMFAPHCIGLASIS 223
>sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2
SV=1
Length = 257
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Query: 39 EEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLA 98
EE++ + I + I L +Q+K+RQ+VIATA YF+R Y R S+ DP L+APTC++LA
Sbjct: 35 EEFRLVKIHMSFHIWRLAQQVKVRQRVIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLA 94
Query: 99 SKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQ 158
SKVEE V +RLL V K A +++ + ILE E LLE LD L+VY
Sbjct: 95 SKVEESTV--QARLL-----VFYIKKMCASDEKYRFEIKDILEMEMKLLEALDYYLVVYH 147
Query: 159 PYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
PYRPLLQL+QD G D L AW ++ND+ + D+ L++PPY IA+
Sbjct: 148 PYRPLLQLLQDAGITD-LTQFAWGIVNDTYKMDLILIHPPYMIALA 192
>sp|Q9FJK7|CCC12_ARATH Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1
Length = 253
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 109/190 (57%), Gaps = 12/190 (6%)
Query: 36 LSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCV 95
+S E+++ I + +N+I L + +K+RQ+V+ATA Y +R Y R SL +P L+APTC+
Sbjct: 32 ISVEDFRLIKLHMSNYISKLAQHIKIRQRVVATAVTYMRRVYTRKSLTEYEPRLVAPTCL 91
Query: 96 FLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQE-FPYRTNHILECEFYLLENLDCCL 154
+LA K EE V+ + L+ + + YA E F Y ILE E +LE L+ L
Sbjct: 92 YLACKAEE-SVVHAKLLVFYMKKL--------YADEKFRYEIKDILEMEMKVLEALNFYL 142
Query: 155 IVYQPYRPLLQLVQDIGHED-QLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPH 213
+V+ PYR L + +QD G D + L W ++ND+ R D+ L++PP+ I + C + + H
Sbjct: 143 VVFHPYRSLPEFLQDSGINDTSMTHLTWGLVNDTYRMDLILIHPPFLITLA-CIYIASVH 201
Query: 214 VIAEVGTLGE 223
++ T E
Sbjct: 202 KEKDIKTWFE 211
>sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2
Length = 253
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 23 QDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSL 82
DL +ER +S ++++ I +N I L + +K+RQ+V+ATA Y +R Y R S+
Sbjct: 24 HDLDKERG-----ISIDDFKLIKFHMSNHIMKLAQHIKVRQRVVATAITYMRRVYIRKSM 78
Query: 83 KCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILEC 142
+P L+A TC++LASK EE ++ + L+ + + ++ N Y IL
Sbjct: 79 VEFEPRLVALTCLYLASKAEE-SIVQARNLVFYIKRLYPDEYN-------KYELKDILGM 130
Query: 143 EFYLLENLDCCLIVYQPYRPLLQLVQDIGHED-QLLALAWRVINDSLRTDVCLLYPPYQI 201
E +LE LD L+V+ PYR L + +QD D + + W ++ND+ + D+ L++PPY+I
Sbjct: 131 EMKVLEALDYYLVVFHPYRSLSEFLQDAALNDVNMNQITWGIVNDTYKMDLILVHPPYRI 190
Query: 202 AIGECSFSFTPH 213
A+ C + + H
Sbjct: 191 ALA-CIYIASVH 201
>sp|Q4P101|SSN8_USTMA RNA polymerase II holoenzyme cyclin-like subunit OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SSN8 PE=3 SV=1
Length = 393
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
W+LDR L RK DL + E + +FF+N + ++ ++L LRQ+V A+A V+F+R
Sbjct: 12 NNWLLDRPQLELARKEDLRYATRLECAALGVFFSNLLSLICKRLNLRQRVTASANVFFRR 71
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYR 135
F+A+NS +DP L+ TCV++A+KVEE + S + ++ ++ + P
Sbjct: 72 FFAKNSYSALDPFLVCATCVYVAAKVEESPIHIKSAVAEATRSFTEHGF-----RGMPTD 126
Query: 136 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG 171
+ + E EFYLLE ++ ++++ YR L+ + +D G
Sbjct: 127 HSSLAEMEFYLLEEMEFDMVLFHSYRSLIVMFEDYG 162
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 174 DQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPH 213
D++L + W ++ND+ +TD+ L+YPPY +A+ + H
Sbjct: 234 DEVLLMCWFILNDTYKTDIPLMYPPYMVALASIWLGLSLH 273
>sp|Q9C1M4|SSN8_GIBMO RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella
moniliformis GN=SSN8 PE=1 SV=1
Length = 319
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 9/199 (4%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQ 64
STQ RF+ +Q V RQ L + + + + ++++I+F + L ++L +RQQ
Sbjct: 8 STQCRFWSFTKEQLVTMRQKLEEDNAELVRMFPLPQQRRLYIYFNQQLIRLAKRLTIRQQ 67
Query: 65 VIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKL 124
+ATA VY KRFY++ ++ +P L+ T ++LA K+EE RL+ T +
Sbjct: 68 SMATAQVYMKRFYSKVEIRRTNPYLVIATAIYLACKIEESP--QHIRLIVT-------EA 118
Query: 125 NYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVI 184
+ T+ + ECEF+++ + LIV+QPYR + L ++ D + LA VI
Sbjct: 119 RQMWGDLVAIDTSKLGECEFFMISEMRSQLIVFQPYRTITALRNELSLVDDEVQLARSVI 178
Query: 185 NDSLRTDVCLLYPPYQIAI 203
ND TD+ LLYPP+ IA+
Sbjct: 179 NDHFMTDLPLLYPPHIIAM 197
>sp|Q2UDB2|SSN8_ASPOR RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=ssn8 PE=3 SV=2
Length = 301
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 109/202 (53%), Gaps = 15/202 (7%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIRERK---HDLSILSDEEYQKIFIFFANFIQILGEQLKL 61
STQ R + + ++ + D ++ RER H L D+ + I+F+ + LG+++
Sbjct: 8 STQRRHW-LFTKERLADIRESFRERDKAAHSQFPLPDQRL--LNIYFSQQLIKLGKRMST 64
Query: 62 RQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121
RQQ +ATA VY KRFY +N ++ +P L+ T +LA K+EE + VV
Sbjct: 65 RQQALATAQVYIKRFYTKNEIRHTNPYLVVTTAFYLACKMEECP--------QHIRFVVA 116
Query: 122 NKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAW 181
N+ + + + + ECEF L+ ++ LIV+ PYR L +L ++ +ALAW
Sbjct: 117 EARNF-WPEFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSELQPELSLTSDEVALAW 175
Query: 182 RVINDSLRTDVCLLYPPYQIAI 203
VIND TD+ LLYPP+ IA+
Sbjct: 176 SVINDHYLTDLPLLYPPHVIAV 197
>sp|Q2GVK1|SSN8_CHAGB RNA polymerase II holoenzyme cyclin-like subunit OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=SSN8 PE=3 SV=2
Length = 364
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 16 QQWVLDRQDL--IRERKHD-----LSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIAT 68
+ W +QDL IR+R D + + + + + I+F I L +++ LRQQV+AT
Sbjct: 12 KHWQFTKQDLAAIRQRLDDEDPGLVQMFPLPQLRHLNIYFNQQINRLSKRIGLRQQVMAT 71
Query: 69 ATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLST-CQTVVKNKLNYA 127
A VY KRFY R +++ +P L+ T ++LA K+EE R+++ +++ + L+
Sbjct: 72 AQVYLKRFYTRIAIRQTNPYLVLTTVLYLACKMEE--CPQHIRMMTQEARSLWPSDLH-- 127
Query: 128 YAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDS 187
P R + ECEF L+ + LIV+QPYR LL + + G ++LAW VIND
Sbjct: 128 --GHDPAR---VGECEFSLISEMHSNLIVHQPYRSLLGVQDEFGLTQDEMSLAWTVINDH 182
Query: 188 LRTDVCLLYPPY 199
TD+ LL+PP+
Sbjct: 183 YMTDLPLLHPPH 194
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%)
Query: 40 EYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLAS 99
+ + + I+F I LG+++ LRQQ +ATA VY KRFY + ++ +P + T ++LA
Sbjct: 43 QLRHLNIYFNQQINRLGKRMGLRQQALATAQVYIKRFYTKVEIRRTNPHHVLVTALYLAC 102
Query: 100 KVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTN--HILECEFYLLENLDCCLIVY 157
K+EE RL++ N+ + +F +T I ECEFYL+ + LIV+
Sbjct: 103 KMEE--CPQHIRLMA-------NEARGFWPTDFQSQTEVARIGECEFYLISEMSSHLIVH 153
Query: 158 QPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAI 203
PYR L L ++G + + LAW VIND TD+ LL+PP+ IA+
Sbjct: 154 SPYRTLTSLQGELGLAQEDVNLAWSVINDHYMTDLPLLHPPHVIAL 199
>sp|Q5BBA8|SSN8_EMENI RNA polymerase II holoenzyme cyclin-like subunit OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=ssn8 PE=3 SV=2
Length = 302
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 16 QQWVLDRQDL--IRERKHDLSILSDEEY----QKIF-IFFANFIQILGEQLKLRQQVIAT 68
+ W+ R+ L IRE + S + Q++ I+F + LG+++ RQQ +AT
Sbjct: 12 KHWLFTRERLAEIRESFKEKDKASHTHFPLPDQRLLNIYFNQQLIKLGKRMSTRQQALAT 71
Query: 69 ATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG-----VISSSRLLSTCQTVVKNK 123
A VY KR+Y +N ++ +P L+ T +LA K+EE V+S +R L
Sbjct: 72 AQVYIKRYYTKNEIRNTNPYLVLTTAFYLACKMEECPQHIRFVVSEARAL---------- 121
Query: 124 LNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRV 183
+ + + + ECEF L+ + LIV+ PYR L +L ++ +ALAW V
Sbjct: 122 ----WPEFIVPDVSKVGECEFSLISEMQAQLIVHHPYRTLSELQPELSLTSDEVALAWSV 177
Query: 184 INDSLRTDVCLLYPPYQIAI 203
IND TD+ LLYPP+ IA+
Sbjct: 178 INDHYLTDLSLLYPPHIIAV 197
>sp|Q0CV29|SSN8_ASPTN RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1
Length = 301
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 37/234 (15%)
Query: 4 ISTQGRFYPEWIQQWVLDRQDL--IRERKHDLSILSDEEY----QKIF-IFFANFIQILG 56
+STQ R W+ R+ L IRE + ++ ++ Q++ I+F+ + LG
Sbjct: 7 VSTQRR-------HWLFTRERLADIREGFKERDKVAHSQFPLPDQRLLNIYFSQQLIKLG 59
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG-----VISSSR 111
++ RQQ +ATA VY KRFY +N ++ +P L+ T +LA K+EE V++ +R
Sbjct: 60 KRTTTRQQALATAQVYIKRFYTKNDIRHTNPYLVITTAFYLACKMEECPQHIRFVVAEAR 119
Query: 112 LLSTCQTVVKNKLNYAYAQEF-PYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDI 170
++ EF + + ECEF L+ ++ LIV+ PYR L +L ++
Sbjct: 120 ---------------SFWPEFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSELTPEL 164
Query: 171 GHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGE--CSFSFTPHVIAEVGTLG 222
+ALAW VIND TD+ LLYPP+ IA+ + F P + G+ G
Sbjct: 165 QLTSDEVALAWSVINDHYLTDLPLLYPPHVIAVMAIIVAVVFKPSQTSFHGSAG 218
>sp|A4RD79|SSN8_MAGO7 RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=SSN8 PE=3 SV=1
Length = 363
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQ 64
STQ R + ++ RQ L E +++ E++ ++ +F + L + L +RQQ
Sbjct: 8 STQRRNWLFTKEELAARRQQLENEDPSLVTMYPLPEWRHLYNYFNYQMLRLAKNLSIRQQ 67
Query: 65 VIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKL 124
IATA VY KRFY R ++ +P L+ T V+LA K+EE + + V +
Sbjct: 68 AIATAQVYMKRFYTRVEIRSTNPTLVLVTAVYLACKMEEMPLHIRN---------VSLEA 118
Query: 125 NYAYAQEFP-YRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQD--IGHEDQLLALAW 181
+ E P I ECEF+L+ + LIV+QPYR L L QD + ++D +LA+++
Sbjct: 119 KKVWPMETPSLEIAKIGECEFWLISEMSAQLIVHQPYRTLTALQQDFQLANDDHVLAVSF 178
Query: 182 RVINDSLRTDVCLLYPPYQIAIG 204
+ND TD+ LLY P+ IA+
Sbjct: 179 --LNDHFMTDLPLLYAPHTIALA 199
>sp|Q6CAC7|SSN8_YARLI RNA polymerase II holoenzyme cyclin-like subunit OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SSN8 PE=3 SV=1
Length = 280
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 17 QWVLDRQDLIRERKHDLSILSDEEYQKI--------FIFFANFIQILGEQLKLRQQVIAT 68
W+L ++ L RK I + Q I ++ I +LG+ L +RQ+++AT
Sbjct: 13 HWLLTKETLAERRKGLEDIFDPGKLQTIKALNPWHVRVYLHTLIHLLGQNLSIRQRILAT 72
Query: 69 ATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF-----GVISSSRLLSTCQTVVKNK 123
A VY RF+ + I+P L+ T V++A KVEE + S +R L
Sbjct: 73 AEVYLTRFHTKVPFGEINPYLVVATAVYVACKVEEHPQHIRTITSEARSL---------- 122
Query: 124 LNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALA--- 180
+ + I ECEFYL+E L L+++ PY+ L+Q+ + + + +A
Sbjct: 123 ----WPDYISHDPTKIAECEFYLIEELGTYLVIFHPYKSLMQISDAMARSNAQITMAPEE 178
Query: 181 ----WRVINDSLRTDVCLLYPPYQIAIG 204
W +INDS TD+ LL PP+ +A+
Sbjct: 179 IQVTWSMINDSYITDLHLLNPPHIVAMA 206
>sp|Q1EAW8|SSN8_COCIM RNA polymerase II holoenzyme cyclin-like subunit OS=Coccidioides
immitis (strain RS) GN=SSN8 PE=3 SV=2
Length = 303
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 30/202 (14%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQ----------KIFIFFANFIQI-LGEQLKLRQQ 64
Q W+ R++L RK +L D E ++F + N I L ++L +RQQ
Sbjct: 12 QSWLFGREELAEARK----VLGDAERPFIQQYPLPDLRLFNIYVNQQLIKLAKRLNVRQQ 67
Query: 65 VIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKL 124
+ATA VY KRFY + ++ +P L+ T +LA K+EE C ++ L
Sbjct: 68 ALATAQVYVKRFYTKVEIRRTNPYLVLTTAFYLACKIEE------------CPQHIRLVL 115
Query: 125 NYA---YAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAW 181
A + + + I ECEF+L+ ++ LIV+ PYR L +L + +ALAW
Sbjct: 116 GEARGLWPEFIAPDSAKIGECEFWLISEMNSQLIVHHPYRTLSELQSYLSLTSDEIALAW 175
Query: 182 RVINDSLRTDVCLLYPPYQIAI 203
VIND TD+ LL+PP+ I++
Sbjct: 176 SVINDHYLTDLLLLHPPHVISV 197
>sp|Q4WZT9|SSN8_ASPFU RNA polymerase II holoenzyme cyclin-like subunit OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=ssn8 PE=3 SV=1
Length = 302
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 28/201 (13%)
Query: 16 QQWVLDRQDL--IRE--RKHDLSILSD---EEYQKIFIFFANFIQILGEQLKLRQQVIAT 68
+ W+ R+ L IRE R+ D S + + + I+F+ + LG+++ RQQ +AT
Sbjct: 12 RHWLFTREKLAEIREIFREGDKVAHSQFPLPDQRLLNIYFSQQLIKLGKRMSTRQQALAT 71
Query: 69 ATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEE------FGVISSSRLLSTCQTVVKN 122
A VY KRFY +N ++ +P L+ T +LA K+EE F V + L T +
Sbjct: 72 AQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPEFITPDVS 131
Query: 123 KLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWR 182
KL ECEF L+ ++ LIV+ PYR L +L ++ +ALAW
Sbjct: 132 KLG---------------ECEFSLISEMNSQLIVHHPYRTLSELQPELSLTSDEVALAWS 176
Query: 183 VINDSLRTDVCLLYPPYQIAI 203
VIND TD+ LLY P+ IA+
Sbjct: 177 VINDHYLTDLPLLYAPHVIAV 197
>sp|A3LPX1|SSN8_PICST RNA polymerase II holoenzyme cyclin-like subunit OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=SSN8 PE=3 SV=2
Length = 346
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 43/217 (19%)
Query: 16 QQWVLDRQDLIRERKHDLSILSD-------EEYQKIF------IFFANFIQILGEQLKLR 62
+W L RQ L+ R+ L + ++Y I I+ N + LG +L +R
Sbjct: 12 NKWQLSRQSLLEARRKVLLLERKMIQNGLIKDYPNIHYDFNMRIYLHNLLIKLGRRLNIR 71
Query: 63 QQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG-----VISSSRLLSTCQ 117
Q +ATA +Y RF R SLK I+ LL TC+++A K+EE +IS +R L
Sbjct: 72 QVALATAEIYLNRFLTRVSLKEINVYLLVTTCLYVACKIEECPQHIRLIISEARNL---- 127
Query: 118 TVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHE---- 173
+ + P+ + E EFYL+E +D L ++ PY+ L+Q ++D +E
Sbjct: 128 ----------WPEYIPHDVTKLAEFEFYLIEEMDSYLFLHHPYKSLIQ-IRDFLNENSAV 176
Query: 174 ------DQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
D L AW ++NDS TD+ LL PP+ IA+
Sbjct: 177 FGFTLTDDELQNAWSLVNDSYITDLHLLLPPHIIAVA 213
>sp|A1C7R6|SSN8_ASPCL RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ssn8 PE=3 SV=2
Length = 302
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 28/197 (14%)
Query: 16 QQWVLDRQDL--IRERKHDLSILSDEEY----QKIF-IFFANFIQILGEQLKLRQQVIAT 68
+ W+ R+ L IRE + L+ ++ Q++ I+F+ + LG+++ RQQ +AT
Sbjct: 12 RHWLFTRERLAEIREAFRERHKLAHSQFPLPDQRLLNIYFSQQLIKLGKRMSTRQQALAT 71
Query: 69 ATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEE------FGVISSSRLLSTCQTVVKN 122
A VY KRFY +N ++ +P L+ T +LA K+EE F V + L T +
Sbjct: 72 AQVYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPEFITPDVS 131
Query: 123 KLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWR 182
KL ECEF L+ ++ LIV+ PYR L L ++ +ALAW
Sbjct: 132 KLG---------------ECEFSLISEMNSQLIVHHPYRTLSGLQSELSLTSDEVALAWS 176
Query: 183 VINDSLRTDVCLLYPPY 199
VIND TD+ LLY P+
Sbjct: 177 VINDHYLTDLPLLYSPH 193
>sp|Q6CP20|SSN8_KLULA RNA polymerase II holoenzyme cyclin-like subunit OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SSN8 PE=3 SV=1
Length = 304
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 26/185 (14%)
Query: 38 DEEYQ-KIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVF 96
D +Y +I+ +F I LG +L +RQ + TA VY RF R S++ ++ LL TC++
Sbjct: 67 DRDYNLRIYCYF--LIMKLGRRLNIRQCALVTAHVYLSRFLLRASVREVNLYLLITTCIY 124
Query: 97 LASKVEEFGVISSSRLLSTCQTVVKNKLNYA---YAQEFPYRTNHILECEFYLLENLDCC 153
LA KVEE C ++ +N A + + P + E EFYL+E L
Sbjct: 125 LACKVEE------------CPQHIRTLVNEARSLWPEFIPPDVTKVTEFEFYLIEELQSY 172
Query: 154 LIVYQPYRPLLQLVQDIGHE-------DQLLALAWRVINDSLRTDVCLLYPPYQIAIGEC 206
LIV+ PYR L Q+ + + E D L W +INDS TDV LLY P+ IAI C
Sbjct: 173 LIVHHPYRSLEQIEKALSSEKYNYKLSDDELQKIWSLINDSYTTDVHLLYSPHVIAIS-C 231
Query: 207 SFSFT 211
F+ +
Sbjct: 232 LFAVS 236
>sp|P47821|SSN8_YEAST RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSN8 PE=1
SV=1
Length = 323
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 26/182 (14%)
Query: 38 DEEYQ-KIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVF 96
D++Y +I+ +F I LG +L +RQ +ATA +Y RF + S++ I+ +L TCV+
Sbjct: 69 DKDYNLRIYCYF--LIMKLGRRLNIRQYALATAHIYLSRFLIKASVREINLYMLVTTCVY 126
Query: 97 LASKVEEFGVISSSRLLSTCQTVVKNKLNYA---YAQEFPYRTNHILECEFYLLENLDCC 153
LA KVEE C ++ ++ A + + P + E EFYLLE L+
Sbjct: 127 LACKVEE------------CPQYIRTLVSEARTLWPEFIPPDPTKVTEFEFYLLEELESY 174
Query: 154 LIVYQPYRPLLQLVQDIGHEDQLLALA-------WRVINDSLRTDVCLLYPPYQIAIGEC 206
LIV+ PY+ L Q+VQ + + L+ W +INDS DV LLYPP+ IA+ C
Sbjct: 175 LIVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVA-C 233
Query: 207 SF 208
F
Sbjct: 234 LF 235
>sp|Q5A4H9|SSN8_CANAL RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SSN8 PE=3
SV=1
Length = 434
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 24/171 (14%)
Query: 46 IFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG 105
I+ N + LG +L +RQ +ATA +Y RF R SLK I+ LL TC+++A K+EE
Sbjct: 55 IYLHNLLIKLGRRLNIRQIALATAEIYLTRFLTRVSLKEINVYLLITTCIYVACKIEE-- 112
Query: 106 VISSSRLLSTCQTVVKNKLNYA---YAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRP 162
C ++ L+ A + + P+ + E EFYL+E +D L+++ PY+
Sbjct: 113 ----------CPQHIRLILSEARNIWPEYIPHDVTKLAEFEFYLIEEMDSYLLLHHPYKS 162
Query: 163 LLQLVQDIGHEDQLLAL---------AWRVINDSLRTDVCLLYPPYQIAIG 204
L+Q+ + + + + AW +INDS TD+ LL PP+ IA+
Sbjct: 163 LMQINEFLSNNYNVFGFKLTVEELQNAWSLINDSYITDLHLLLPPHTIAVA 213
>sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SSN8 PE=3 SV=1
Length = 339
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 25/178 (14%)
Query: 38 DEEYQ-KIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVF 96
D++Y +I+ +F I LG +L +RQ +ATA +Y RF + S++ ++ LL TCV+
Sbjct: 87 DKDYNLRIYCYF--LIMKLGRRLNIRQYALATAHIYLSRFLLKASVREVNLYLLVTTCVY 144
Query: 97 LASKVEEFGVISSSRLLSTCQTVVKNKLNYA---YAQEFPYRTNHILECEFYLLENLDCC 153
LA KVEE C ++ ++ A + + P + E EFYL+E L C
Sbjct: 145 LACKVEE------------CPQYIRTLVSEARSLWPEFIPPDPTKVTEFEFYLIEELQCY 192
Query: 154 LIVYQPYRPLLQLVQDIGHEDQLLALA-------WRVINDSLRTDVCLLYPPYQIAIG 204
LIV+ PY+ + Q+V+ + E L W +INDS DV L Y P+ IA+
Sbjct: 193 LIVHHPYKSMEQIVEALKEEPFKLTFTSDELQNCWSLINDSFINDVHLTYAPHIIAMA 250
>sp|Q75AX7|SSN8_ASHGO RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SSN8 PE=3 SV=2
Length = 332
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 26/182 (14%)
Query: 38 DEEYQ-KIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVF 96
D +Y +I+ +F I LG +L +RQ +ATA VY RF + S++ ++ LL TC++
Sbjct: 68 DRDYNLRIYCYF--LIMKLGRRLNVRQYALATAHVYLARFCLKASIREVNLYLLVTTCIY 125
Query: 97 LASKVEEFGVISSSRLLSTCQTVVKNKLNYA---YAQEFPYRTNHILECEFYLLENLDCC 153
LA KVEE C ++ +N A + + P + E EFYL+E L
Sbjct: 126 LACKVEE------------CPQHIRTLVNEARSLWPEFVPPDPTKVTEFEFYLIEELQSY 173
Query: 154 LIVYQPYRPLLQLVQDIGHEDQLLAL-------AWRVINDSLRTDVCLLYPPYQIAIGEC 206
+IV+ PYR + Q+ + L L +W +INDS TDV LLYPP+ IA+ C
Sbjct: 174 MIVHYPYRAMEQIAAALRRPPYNLVLSPDDLQNSWSLINDSYITDVHLLYPPHVIAMA-C 232
Query: 207 SF 208
F
Sbjct: 233 LF 234
>sp|Q6BYF8|SSN8_DEBHA RNA polymerase II holoenzyme cyclin-like subunit OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SSN8 PE=3 SV=2
Length = 345
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 35/208 (16%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFI--------------FFANFIQILGEQLKL 61
+W L R L+ R+ L +L + Q FI + N + LG +L +
Sbjct: 12 NRWQLTRHSLLESRR-KLLLLEKKMIQNGFIKDYPNVEYDANTRIYLHNLLIKLGRRLNV 70
Query: 62 RQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121
RQ +ATA +Y RF + SLK I+ LL TC++ A K+EE RL+++
Sbjct: 71 RQIALATAEIYMSRFLIKVSLKEINVYLLVTTCLYAACKIEE--CPQHIRLITS------ 122
Query: 122 NKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHE-------- 173
+ + + P + E EFYL+E +D L+++ PYR LLQ ++D +E
Sbjct: 123 -EARNLWPEYIPQDVTKLAEFEFYLIEEMDSFLVLHHPYRSLLQ-IRDYLNENFALYGFS 180
Query: 174 --DQLLALAWRVINDSLRTDVCLLYPPY 199
D L +W +INDS TD+ LL PP+
Sbjct: 181 LSDDELQNSWSLINDSYITDLHLLLPPH 208
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2
Length = 460
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 4/200 (2%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQ 64
S + + I W R+++ R + + ++ + F++ILGE+LK+ Q
Sbjct: 18 SVASNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQV 77
Query: 65 VIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKL 124
IATA + RF+ R S D +A C+ LA KVEE V ++++ + + K L
Sbjct: 78 TIATAIFFCHRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDL 137
Query: 125 NYAYAQE-FPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHED---QLLALA 180
A +E + + +L E +L L+ L + PY+PL++ ++ ED QL A
Sbjct: 138 AGAQRKEVYDQQKELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFA 197
Query: 181 WRVINDSLRTDVCLLYPPYQ 200
W +ND LRT +CL Y P+
Sbjct: 198 WNFVNDCLRTTLCLQYQPHH 217
>sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pch1 PE=1 SV=1
Length = 342
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 8/204 (3%)
Query: 17 QWVLDRQDLI-RERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
QW++ + L+ D L EE Q+ NFI +G +LKL Q +ATA +YF R
Sbjct: 17 QWIISKDQLVFTPSALDGIPLDQEEIQRSK--GCNFIINVGLRLKLPQTALATANIYFHR 74
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNY---AYAQEF 132
FY R SLK +A TC+FLA+KVE+ V ++ C V + N +E+
Sbjct: 75 FYLRFSLKNYHYYEVAATCIFLATKVED-SVRKLRDIVINCAKVAQKNSNVLVDEQTKEY 133
Query: 133 PYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQD-IGHEDQLLALAWRVINDSLRTD 191
+ IL E LLE L V PY +L ++ + + + +AW INDS R+
Sbjct: 134 WRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVADDKNVTKVAWTYINDSTRSI 193
Query: 192 VCLLYPPYQIAIGECSFSFTPHVI 215
CLLY P IA F+ + I
Sbjct: 194 ACLLYSPKTIAAAAFQFALEKNEI 217
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1
Length = 541
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 48 FANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF--- 104
+ F+Q LG +LK+ Q IATA ++ RF+ R S D +A C+FLA KVEE
Sbjct: 63 YCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRP 122
Query: 105 --GVISSS-----RLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVY 157
VI S + T +K K Y +E IL E +L L VY
Sbjct: 123 LKDVIVVSYEIIHKKDPTTAQKIKQKEVYEQQKEL------ILNGEKIVLSTLGFDFNVY 176
Query: 158 QPYRPLLQLVQDIG-HEDQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
PY+PL++ ++ ++ L +AW +ND LRT +CL + P+ IA G
Sbjct: 177 HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAG 224
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 21/205 (10%)
Query: 13 EWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVY 72
E + +W R+++ L + ++ + + F+Q LG +LK+ Q IATA ++
Sbjct: 28 EEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIF 87
Query: 73 FKRFYARNSLKCIDPLLLAPTCVFLASKVEE------------FGVISSSRLLSTCQTVV 120
RF+ R S D +A C+FLA KVEE + +I+ ++ + +
Sbjct: 88 CHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQK--I 145
Query: 121 KNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG-HEDQLLAL 179
K K Y +E IL E +L L L VY PY+PL++ ++ ++ L +
Sbjct: 146 KQKEVYEQQKEL------ILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQV 199
Query: 180 AWRVINDSLRTDVCLLYPPYQIAIG 204
AW +ND LRT +CL + P+ IA G
Sbjct: 200 AWNFVNDGLRTSLCLQFKPHHIAAG 224
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
Length = 543
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 5 STQGRFYP--EWIQQWVLDRQDLIRER--KHDLSILSDEEYQKIFIFFANFIQILGEQLK 60
+TQGR E W R+++ + D L E Y + + F+Q LG +LK
Sbjct: 21 TTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESY--LRKSYCTFLQDLGMRLK 78
Query: 61 LRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTV- 119
+ Q IATA V+ RFY R S D +A C+FLA KVEE +L + + +
Sbjct: 79 VPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIH 138
Query: 120 ---------VKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDI 170
+K K Y +E IL E +L L L V+ PY+PL++ ++
Sbjct: 139 KKDPAAGQRIKQKEVYDQQKEL------ILLAERVVLATLGFDLNVHHPYKPLVEAIRKF 192
Query: 171 G-HEDQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
++ L +AW +ND LRT +CL + P+ IA G
Sbjct: 193 KVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAG 227
>sp|O94503|SRB11_SCHPO RNA polymerase II holoenzyme cyclin-like subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srb11 PE=1 SV=1
Length = 228
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 10/172 (5%)
Query: 32 DLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFY-ARNSLKCIDPLLL 90
DL L K I+ +Q G++L+LRQ+V+ATA V +R+ +N K L
Sbjct: 19 DLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEAL 78
Query: 91 APTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENL 150
TC++L+ KVEE V + + C N+ N ++ + ++I E EF ++ L
Sbjct: 79 VATCIYLSCKVEECPV----HIRTIC-----NEANDLWSLKVKLSRSNISEIEFEIISVL 129
Query: 151 DCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIA 202
D LIV+ PY L Q D + L AW ++NDS + +CL+ P+Q+A
Sbjct: 130 DAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLA 181
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 10 FYPEWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATA 69
F + I++ L R+D I L E Y + + F+Q LG +LK+ Q IATA
Sbjct: 39 FSRKEIEENSLSRRDGI--------DLKKESY--LRKSYCTFLQDLGMRLKVPQVTIATA 88
Query: 70 TVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTV---------- 119
V+ RF+ R S D +A C+FLA KVEE +L + + +
Sbjct: 89 IVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQR 148
Query: 120 VKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG-HEDQLLA 178
+K K Y +E IL E +L L L V+ PY+PL++ ++ ++ L
Sbjct: 149 IKQKEVYEQQKEL------ILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQNALAQ 202
Query: 179 LAWRVINDSLRTDVCLLYPPYQIAIG 204
+AW +ND LRT +CL + P+ IA G
Sbjct: 203 VAWNFVNDGLRTSLCLQFKPHHIAAG 228
>sp|P37366|CCL1_YEAST Cyclin CCL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CCL1 PE=1 SV=1
Length = 393
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 36 LSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCV 95
L+ EE + F+A +Q++ + L L +V+ATA +F+RF+ NS+ IDP + T +
Sbjct: 108 LTMEEELDLVNFYAKKVQVIAQHLNLPTEVVATAISFFRRFFLENSVMQIDPKSIVHTTI 167
Query: 96 FLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLI 155
FLA K E + + S +AQ+ + +L+ EF LLE+L L+
Sbjct: 168 FLACKSENYFISVDS-----------------FAQKAKSTRDSVLKFEFKLLESLKFSLL 210
Query: 156 VYQPYRPLLQLVQDI-----GHED-----QLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
+ PY+PL DI G D Q+ + I +L TDV Y P QI +
Sbjct: 211 NHHPYKPLHGFFLDIQNVLYGKVDLNYMGQIYDRCKKRITAALLTDVVYFYTPPQITLA 269
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1
Length = 247
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 36 LSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCV 95
L +E +Q+ + +F+Q LG++L Q+ IATA V +RF+ R SL DP +A C+
Sbjct: 27 LKEETFQRWS--YTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICM 84
Query: 96 FLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLI 155
F+A KVE + + + + + + F +L E +L L+C L
Sbjct: 85 FIAGKVEGSPRPAGDVVFVSYRVLFNKE---PLRDVFERLKMTVLTGEKLVLSTLECDLE 141
Query: 156 VYQPYRPLLQLVQ-DIGHED--QLLALAWRVINDSLRTDVCLLYPPYQIA 202
+ PY+ ++ V+ + ED +L A+ +NDSLRT +CL + P QIA
Sbjct: 142 IEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFVNDSLRTSLCLQFGPSQIA 191
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2
Length = 630
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIR---ERKHDLSILSDEEYQKIFIFFANFIQILGEQLKL 61
S + E + W R++L + RK ++ + + E ++++ +FI+ +G +LKL
Sbjct: 5 SQTSKLSCEHMYSWYFTREELEKFSPSRKDGITEIMESEIRQLY---CSFIRDVGIRLKL 61
Query: 62 RQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121
Q IATA ++ RFY SL +A C+FLASKVE+ + T+ +
Sbjct: 62 PQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYR 121
Query: 122 NKLNYAY----AQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG-HEDQL 176
A F + IL E +L + + PYRPLL ++ +G + ++
Sbjct: 122 RDPATARRIHQKDVFEKQKALILTGERLVLTTVRFDFNIQHPYRPLLDAMEKLGISQKEV 181
Query: 177 LALAWRVINDSLRTDVCLLYPPYQIAIG 204
+AW +ND L+T +CL Y P IA G
Sbjct: 182 KQVAWNFVNDWLKTTLCLQYKPQYIAAG 209
>sp|P51947|CCNH_XENLA Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1
Length = 323
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 41 YQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASK 100
Y+K + F N + + + V+ TA +YFKRFY NS+ P ++ TCVFLA K
Sbjct: 60 YEKRLLDFCNAFKP-----TMPKSVLGTACMYFKRFYLNNSVMEHHPRIIMLTCVFLACK 114
Query: 101 VEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPY 160
V+EF V S + + +N L E ILE E L++ L+ LIV+ PY
Sbjct: 115 VDEFNVSS----IQFVGNLGENPLGQEKILE------QILEYELLLIQQLNFHLIVHNPY 164
Query: 161 RPLLQLVQDIG-------HEDQLLALAWRVINDSLRTDVCLLYPPYQIAI 203
RP + D+ + + L A +N TD CLL+ P IA+
Sbjct: 165 RPFEGFLIDVKTRYPMLENPEVLRKSADEFLNRVALTDACLLFAPSVIAL 214
>sp|Q3ZBL9|CCNH_BOVIN Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1
Length = 320
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 63 QQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKN 122
+ V+ TA +YFKRFY NS+ P ++ TC FLA KV+EF V S V N
Sbjct: 77 RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQ--------FVGN 128
Query: 123 KLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLL----- 177
QE ILE E L++ L+ LIV+ PYRP + D+ LL
Sbjct: 129 LRESPLGQE--KTLEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPLLENPEI 186
Query: 178 --ALAWRVINDSLRTDVCLLYPPYQIAI 203
A +N TD LLY P QIA+
Sbjct: 187 LRKTADDFLNRVALTDAHLLYTPSQIAL 214
>sp|Q9R1A0|CCNH_RAT Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2
Length = 323
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 71/148 (47%), Gaps = 17/148 (11%)
Query: 63 QQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKN 122
+ V+ TA +YFKRFY NS+ P ++ TC FLA KV+EF V S V N
Sbjct: 77 RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQ--------FVGN 128
Query: 123 KLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLL---AL 179
QE ILE E L++ L+ LIV+ PYRP + DI +L +
Sbjct: 129 LRESPLGQE--KALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPMLENPEI 186
Query: 180 AWRVINDSLR----TDVCLLYPPYQIAI 203
+ +D L TD LLY P QIA+
Sbjct: 187 LRKTADDFLSRIALTDAYLLYTPSQIAL 214
>sp|Q61458|CCNH_MOUSE Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2
Length = 323
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 71/148 (47%), Gaps = 17/148 (11%)
Query: 63 QQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKN 122
+ V+ TA +YFKRFY NS+ P ++ TC FLA KV+EF V S V N
Sbjct: 77 RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQ--------FVGN 128
Query: 123 KLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLL---AL 179
QE ILE E L++ L+ LIV+ PYRP + DI +L +
Sbjct: 129 LRESPLGQE--RALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPMLENPEI 186
Query: 180 AWRVINDSLR----TDVCLLYPPYQIAI 203
+ +D L TD LLY P QIA+
Sbjct: 187 LRKTADDFLSRIALTDAYLLYTPSQIAL 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,675,315
Number of Sequences: 539616
Number of extensions: 3063542
Number of successful extensions: 8706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 8490
Number of HSP's gapped (non-prelim): 131
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)