Query psy1168
Match_columns 229
No_of_seqs 160 out of 1145
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 16:07:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgf_B Cyclin-C; protein kinas 100.0 1.1E-50 3.7E-55 340.6 21.2 212 5-216 2-214 (285)
2 2ivx_A Cyclin-T2; transcriptio 100.0 1.2E-42 4.2E-47 287.9 19.8 200 15-216 2-204 (257)
3 1zp2_A RNA polymerase II holoe 100.0 1.1E-42 3.9E-47 284.5 14.3 188 10-215 1-190 (235)
4 1jkw_A Cyclin H; cell cycle, c 100.0 5.9E-42 2E-46 291.9 17.9 197 10-216 2-227 (323)
5 2i53_A Cyclin K; cell cycle, t 100.0 3.1E-41 1.1E-45 279.6 17.8 199 13-216 10-212 (258)
6 2pk2_A Cyclin-T1, protein TAT; 100.0 1.4E-41 4.8E-46 292.9 12.3 201 13-215 7-210 (358)
7 1c9b_A General transcription f 100.0 5.9E-32 2E-36 216.9 17.9 155 45-216 5-159 (207)
8 2b9r_A Human cyclin B1; cell c 100.0 5.4E-32 1.8E-36 225.3 14.5 161 42-216 35-195 (269)
9 3g33_B CCND3 protein; Ser/Thr 100.0 2.5E-32 8.5E-37 230.9 8.4 168 35-216 61-232 (306)
10 1g3n_C V-cyclin; cyclin-depend 100.0 3.6E-31 1.2E-35 219.0 14.3 161 42-216 48-212 (257)
11 2cch_B Cyclin A2, cyclin-A; co 100.0 9.1E-32 3.1E-36 222.9 9.2 160 42-215 36-197 (260)
12 2f2c_A Cyclin homolog, V-cycli 100.0 2.9E-31 9.8E-36 219.2 10.8 163 38-214 45-211 (254)
13 2w96_A G1/S-specific cyclin-D1 100.0 1.9E-30 6.5E-35 216.2 12.8 160 42-215 54-217 (271)
14 1ais_B TFB TFIIB, protein (tra 100.0 8.4E-29 2.9E-33 197.5 15.2 158 41-216 6-165 (200)
15 1f5q_B Gamma herpesvirus cycli 100.0 1.6E-28 5.5E-33 202.0 13.0 160 37-210 41-204 (252)
16 1w98_B Cyclin E, G1/S-specific 100.0 1.6E-28 5.6E-33 205.6 13.0 156 42-211 47-214 (283)
17 3k7a_M Transcription initiatio 99.9 1.4E-26 4.8E-31 198.7 6.6 154 46-216 127-292 (345)
18 4bbr_M Transcription initiatio 99.9 1.7E-22 5.8E-27 173.0 9.8 153 46-215 127-291 (345)
19 1ais_B TFB TFIIB, protein (tra 98.4 1.2E-06 4E-11 69.0 9.5 89 49-154 109-197 (200)
20 1c9b_A General transcription f 98.0 3.1E-05 1.1E-09 61.1 9.4 66 49-115 103-168 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.8 0.00018 6.2E-09 59.3 11.1 103 50-169 79-184 (293)
22 4bbr_M Transcription initiatio 96.7 0.00025 8.5E-09 60.4 0.0 67 48-115 235-301 (345)
23 3k7a_M Transcription initiatio 96.7 0.00027 9.1E-09 60.2 0.0 66 49-115 236-301 (345)
24 1zp2_A RNA polymerase II holoe 96.1 0.014 4.6E-07 46.7 6.7 55 50-104 136-190 (235)
25 3rgf_B Cyclin-C; protein kinas 95.2 0.021 7E-07 47.1 4.7 56 50-105 159-214 (285)
26 2i53_A Cyclin K; cell cycle, t 95.0 0.048 1.6E-06 44.0 6.5 56 50-105 153-212 (258)
27 2b9r_A Human cyclin B1; cell c 94.2 0.1 3.6E-06 42.4 6.7 56 50-105 140-195 (269)
28 2ivx_A Cyclin-T2; transcriptio 94.2 0.11 3.8E-06 41.8 6.7 56 160-215 35-90 (257)
29 3m03_A ORC6, origin recognitio 94.0 0.11 3.9E-06 35.2 5.4 61 52-114 6-71 (95)
30 1jkw_A Cyclin H; cell cycle, c 93.5 0.13 4.6E-06 43.0 6.3 55 161-215 62-118 (323)
31 3h4c_A Transcription factor TF 92.9 0.38 1.3E-05 37.3 7.2 65 48-113 15-82 (260)
32 2pk2_A Cyclin-T1, protein TAT; 92.8 0.16 5.4E-06 43.2 5.7 56 160-215 42-97 (358)
33 2cch_B Cyclin A2, cyclin-A; co 91.7 0.51 1.8E-05 38.0 7.3 57 49-105 140-198 (260)
34 4ell_A Retinoblastoma-associat 90.1 1.4 4.9E-05 37.9 8.8 74 42-116 276-352 (411)
35 2r7g_A PP110, retinoblastoma-a 89.9 1.5 5.1E-05 36.9 8.5 74 42-116 212-288 (347)
36 2f2c_A Cyclin homolog, V-cycli 89.4 2 7E-05 34.2 8.8 53 50-102 154-210 (254)
37 2w96_A G1/S-specific cyclin-D1 89.1 0.66 2.3E-05 37.5 5.7 54 50-103 159-216 (271)
38 3g33_B CCND3 protein; Ser/Thr 88.8 2.6 8.9E-05 34.7 9.2 55 50-104 173-231 (306)
39 1g3n_C V-cyclin; cyclin-depend 88.7 0.54 1.9E-05 37.7 4.9 55 50-104 153-211 (257)
40 2qdj_A Retinoblastoma-associat 88.3 1 3.4E-05 37.3 6.3 65 52-116 6-73 (304)
41 4elj_A Retinoblastoma-associat 86.6 3.8 0.00013 37.5 9.5 75 42-117 521-598 (656)
42 1w98_B Cyclin E, G1/S-specific 81.8 2.1 7.1E-05 34.9 5.3 55 161-215 55-110 (283)
43 1f5q_B Gamma herpesvirus cycli 72.3 4.7 0.00016 32.2 4.7 55 161-215 54-108 (252)
44 4elj_A Retinoblastoma-associat 71.3 9.1 0.00031 35.0 6.8 63 52-116 8-75 (656)
45 2qdj_A Retinoblastoma-associat 31.8 88 0.003 25.6 5.7 49 163-211 6-57 (304)
46 1o9a_B FNBB, fibronectin bindi 26.7 26 0.00089 18.2 1.1 13 217-229 10-22 (36)
47 4gwg_A 6-phosphogluconate dehy 24.4 1.5E+02 0.005 25.9 6.2 25 52-76 410-434 (484)
48 2r7g_A PP110, retinoblastoma-a 23.8 1.3E+02 0.0044 25.1 5.4 82 134-215 166-277 (347)
49 1eex_A Propanediol dehydratase 20.2 85 0.0029 27.1 3.6 58 6-65 374-432 (554)
No 1
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=340.65 Aligned_cols=212 Identities=64% Similarity=1.128 Sum_probs=198.6
Q ss_pred cccccchh-hhccCCcccHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccc
Q psy1168 5 STQGRFYP-EWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLK 83 (229)
Q Consensus 5 ~~~~~~~~-~~~~~w~f~~~~l~~~~~~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~ 83 (229)
+|++|||. +|.++|+||++||++.|+.+.+++++++|+++|..+++||.++|.+|+||+.|.++|++||||||++++++
T Consensus 2 ~m~~~~w~Ss~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~ 81 (285)
T 3rgf_B 2 AMAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLK 81 (285)
T ss_dssp TTTTCGGGSHHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred CccchhhcccccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCch
Confidence 79999999 99999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHH
Q psy1168 84 CIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPL 163 (229)
Q Consensus 84 ~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l 163 (229)
++++++|++||||||||+||.+++++++++.++..+.+++.....++++...+++|+.+|+.||++||||+.+++||+|+
T Consensus 82 ~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL 161 (285)
T 3rgf_B 82 SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPL 161 (285)
T ss_dssp TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHH
T ss_pred hcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHH
Confidence 99999999999999999999987678999988776666544444456677789999999999999999999999999999
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCccc
Q psy1168 164 LQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 164 ~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~~ 216 (229)
.+|++.++.++++.+.||.++++++.++.|+.|+|+.||+||||+|+.+++.+
T Consensus 162 ~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~ 214 (285)
T 3rgf_B 162 LQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKD 214 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999988753
No 2
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.2e-42 Score=287.92 Aligned_cols=200 Identities=22% Similarity=0.298 Sum_probs=179.4
Q ss_pred ccCCcccHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHH
Q psy1168 15 IQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTC 94 (229)
Q Consensus 15 ~~~w~f~~~~l~~~~~~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~ac 94 (229)
.++|+||++||+++|+. .+|+++++|.++|..+++||.++|.++++|+.|.++|++||||||+++++++++++++++||
T Consensus 2 ~~~w~~t~e~l~~~ps~-~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac 80 (257)
T 2ivx_A 2 SSRWFFTREQLENTPSR-RCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA 80 (257)
T ss_dssp CGGGSCCHHHHHSCHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred CCCeeecHHHHHhChHh-hcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence 47999999999988764 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccchHHHHHHHHHHHHhhhc--ccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCc
Q psy1168 95 VFLASKVEEFGVISSSRLLSTCQTVVKNKLN--YAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGH 172 (229)
Q Consensus 95 l~LA~K~ee~~~~~l~~li~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~ 172 (229)
||||||+||.|+ ++++++.++....++..+ ...++.|...+++|+.+|+.||++||||+.+++|+.|+.+|++.++.
T Consensus 81 L~lA~K~EE~p~-~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~ 159 (257)
T 2ivx_A 81 LFLAAKVEEQAR-KLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA 159 (257)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC
T ss_pred HHHHhccccCCc-CHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC
Confidence 999999999975 999998876654332211 11234566679999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHh-CCcccccccHHHHHHHHHHHhcccCccc
Q psy1168 173 EDQLLALAWRVINDSL-RTDVCLLYPPYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 173 ~~~i~~~a~~~~~~~~-~~~~~l~~~P~~IA~aai~~A~~~~~~~ 216 (229)
++++.+.|+.++++++ .++.++.|+|+.||+||+|+|+..+|..
T Consensus 160 ~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 204 (257)
T 2ivx_A 160 SKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWE 204 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998 5889999999999999999999988753
No 3
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-42 Score=284.48 Aligned_cols=188 Identities=28% Similarity=0.408 Sum_probs=170.1
Q ss_pred chh-hhccCCcccHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcccccc-CCc
Q psy1168 10 FYP-EWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKC-IDP 87 (229)
Q Consensus 10 ~~~-~~~~~w~f~~~~l~~~~~~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~-~~~ 87 (229)
||+ +|.++|+||++|+++.|+.. .. + |..+++||.++|.+|+||+.|.++|++||||||+++++++ +++
T Consensus 1 ~~~Ss~~~~w~ft~~~l~~~~~~~----~~--~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~ 71 (235)
T 1zp2_A 1 YWASSQLTQLFLSTDLESLEPTCL----SK--D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSL 71 (235)
T ss_dssp -CCCGGGTGGGSCSSCTTSSCCCS----CH--H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCH
T ss_pred CCccCCCCCCccCHHHHHHCCcch----hH--H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCH
Confidence 789 99999999999999887632 11 1 7899999999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHH
Q psy1168 88 LLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLV 167 (229)
Q Consensus 88 ~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~ 167 (229)
+++++||||||||+||.++ ++++++.++.+.. ++.+...+++|+.+|+.||++||||+.+++|++|+.+|+
T Consensus 72 ~lv~~acL~lA~K~Ee~~~-~l~d~~~~~~~~~--------~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~ 142 (235)
T 1zp2_A 72 EALVATCIYLSCKVEECPV-HIRTICNEANDLW--------SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAF 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHTTC--------CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcc-cHHHHHHHHHHHc--------cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHH
Confidence 9999999999999999986 9999987654321 233455689999999999999999999999999999999
Q ss_pred HHhCccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 168 QDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 168 ~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
+.++.++++.+.|+.++++++.++.++.|+|++||+||+|+|+..++.
T Consensus 143 ~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 143 HDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999998875
No 4
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=5.9e-42 Score=291.91 Aligned_cols=197 Identities=30% Similarity=0.461 Sum_probs=166.4
Q ss_pred chh-hhccCCcccH-HHHHHhhh------------------cCCCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHH
Q psy1168 10 FYP-EWIQQWVLDR-QDLIRERK------------------HDLSILSDEEYQKIFIFFANFIQILGEQLK--LRQQVIA 67 (229)
Q Consensus 10 ~~~-~~~~~w~f~~-~~l~~~~~------------------~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~--l~~~~~~ 67 (229)
||+ +|.++|+||+ ++|++.|. ...+++++++|+.+|.++++||.++|.+++ ||+.|.+
T Consensus 2 y~~Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~ 81 (323)
T 1jkw_A 2 YHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVG 81 (323)
T ss_dssp ---------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHH
T ss_pred CCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 789 9999999995 78886642 357799999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHH
Q psy1168 68 TATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLL 147 (229)
Q Consensus 68 ~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL 147 (229)
+|++||||||+++++.++++++|++||||||||+||.++ ++++++..... .+......+++|+.+|+.||
T Consensus 82 tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~-~l~d~v~~~~~---------~p~~~~~~~~~Il~~E~~iL 151 (323)
T 1jkw_A 82 TACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV-SSPQFVGNLRE---------SPLGQEKALEQILEYELLLI 151 (323)
T ss_dssp HHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC-CHHHHGGGSSS---------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC-CHHHHHHHhcc---------ChhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 99998653210 00112345899999999999
Q ss_pred HHcCcceeecCChHHHHHHHHHh-------CccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCccc
Q psy1168 148 ENLDCCLIVYQPYRPLLQLVQDI-------GHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 148 ~~L~fdl~~~~P~~~l~~~~~~l-------~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~~ 216 (229)
++|+|++.+++||+|+.+|+..+ +....+.+.||.++++++.++.|+.|+|++||+||||+|+..+|.+
T Consensus 152 ~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~ 227 (323)
T 1jkw_A 152 QQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGIT 227 (323)
T ss_dssp HHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999876 2346789999999999999999999999999999999999987764
No 5
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.1e-41 Score=279.56 Aligned_cols=199 Identities=26% Similarity=0.381 Sum_probs=175.3
Q ss_pred hhccCCcccHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHH
Q psy1168 13 EWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAP 92 (229)
Q Consensus 13 ~~~~~w~f~~~~l~~~~~~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~ 92 (229)
.+.++|+||++|++++|+. .++++++.|.++|..+++||.++|.++++++.|.++|+.|||||+.++++++++++++++
T Consensus 10 ~~~~~w~~~~~el~~~ps~-~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ 88 (258)
T 2i53_A 10 HTKPCWYWDKKDLAHTPSQ-LEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGA 88 (258)
T ss_dssp SCSSSCCCCGGGGGGCHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHH
T ss_pred hhccCCccCHHHHHhCchh-hcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHH
Confidence 5678899999999887653 568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCc
Q psy1168 93 TCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGH 172 (229)
Q Consensus 93 acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~ 172 (229)
||||||||+||.++ ++++++.++........ +.......+++|+.+|+.||++|||++.+++|++|+.+|++.++.
T Consensus 89 acL~lA~K~eE~~~-~l~d~~~~~~~~~~~~~---~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~ 164 (258)
T 2i53_A 89 CCLFLAGKVEETPK-KCKDIIKTARSLLNDVQ---FGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKG 164 (258)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHHSCHHH---HGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCS
T ss_pred HHHHHHHccccccc-cHHHHHHHHHHHhchhh---hhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCC
Confidence 99999999999985 99999887654322100 000011247899999999999999999999999999999999987
Q ss_pred cH----HHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCccc
Q psy1168 173 ED----QLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 173 ~~----~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~~ 216 (229)
+. ++.+.|+.++++++.++.++.|+|+.||+|||++|+..+|.+
T Consensus 165 ~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 212 (258)
T 2i53_A 165 DKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE 212 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCC
Confidence 65 799999999999999999999999999999999999988763
No 6
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=1.4e-41 Score=292.93 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=178.8
Q ss_pred hhccCCcccHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHH
Q psy1168 13 EWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAP 92 (229)
Q Consensus 13 ~~~~~w~f~~~~l~~~~~~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~ 92 (229)
.+.++|+||++||+++|+. .+++++++|..+|..+++||.+++.+|+|++.|+++|++||||||++++++++++++|++
T Consensus 7 ~~~~~wlft~eeL~~~pS~-~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~ 85 (358)
T 2pk2_A 7 NNNKRWYFTREQLENSPSR-RFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAP 85 (358)
T ss_dssp -CCSSSSCCSHHHHTCTTH-HHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHH
T ss_pred CCCCCceeCHHHHHhChhh-hcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 5679999999999988764 467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccccchHHHHHHHHHHHHhhhc--ccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHh
Q psy1168 93 TCVFLASKVEEFGVISSSRLLSTCQTVVKNKLN--YAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDI 170 (229)
Q Consensus 93 acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l 170 (229)
||||||||+||.++ ++++++.++....++..+ ...++.|+..+++|+.+|+.||++|+||+.+++|+.|+.+|++.+
T Consensus 86 acLfLA~K~EE~p~-~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l 164 (358)
T 2pk2_A 86 AALFLAAKVEEQPK-KLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLV 164 (358)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHT
T ss_pred HHHHHHHhhccCCC-CHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHc
Confidence 99999999999985 999998776544332111 112345666789999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHh-CCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 171 GHEDQLLALAWRVINDSL-RTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 171 ~~~~~i~~~a~~~~~~~~-~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
+.++++.+.||.++++++ .+++++.|+|+.||+||||+|+..++.
T Consensus 165 ~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~ 210 (358)
T 2pk2_A 165 RASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNW 210 (358)
T ss_dssp TCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999998 588899999999999999999998875
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=5.9e-32 Score=216.91 Aligned_cols=155 Identities=14% Similarity=0.211 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhh
Q psy1168 45 FIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKL 124 (229)
Q Consensus 45 r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~ 124 (229)
...+.++|.++|.+|+||+.|.++|+.|||||+.++++++++++.+++||+|+|||.||.|+ ++++++.++.
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~-~l~di~~~~~------- 76 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPR-TFKEICAVSR------- 76 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCC-CHHHHHHTSS-------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHC-------
Confidence 34789999999999999999999999999999999999999999999999999999999986 9999876532
Q ss_pred cccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccHHHHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy1168 125 NYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204 (229)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~a 204 (229)
..++++..+|+.|++.|+|++.+++|+.|+.+|++.+++++++.+.|+.+++++..++++++|+|+.||+|
T Consensus 77 ---------~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaA 147 (207)
T 1c9b_A 77 ---------ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAA 147 (207)
T ss_dssp ---------SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHH
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCccc
Q psy1168 205 ECSFSFTPHVIA 216 (229)
Q Consensus 205 ai~~A~~~~~~~ 216 (229)
|+|+|+..+|..
T Consensus 148 aiylA~~~~~~~ 159 (207)
T 1c9b_A 148 AIYMASQASAEK 159 (207)
T ss_dssp HHHHHHHTSSSC
T ss_pred HHHHHHHHHCCC
Confidence 999999998765
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.98 E-value=5.4e-32 Score=225.28 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~ 121 (229)
.++|..+++||.+++.+++++..|.++|+.|+|||++++++.+.+.+++++||+|||||.||...+++++++..+.
T Consensus 35 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~---- 110 (269)
T 2b9r_A 35 GNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTD---- 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhc----
Confidence 4688999999999999999999999999999999999999999999999999999999999985458999876531
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccHHHHHHHHHHHHHHhCCcccccccHHHH
Q psy1168 122 NKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQI 201 (229)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~I 201 (229)
....+++|++||+.||++|+|++.+++|++|+.+|++.++.+.++...|+.++++++.++.++.|+|+.|
T Consensus 111 ----------~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~i 180 (269)
T 2b9r_A 111 ----------NTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQI 180 (269)
T ss_dssp ----------SSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHH
Confidence 1234899999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHhcccCccc
Q psy1168 202 AIGECSFSFTPHVIA 216 (229)
Q Consensus 202 A~aai~~A~~~~~~~ 216 (229)
|+||+++|...++..
T Consensus 181 AaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 181 AAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999988765
No 9
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-32 Score=230.94 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=148.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHH
Q psy1168 35 ILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLS 114 (229)
Q Consensus 35 ~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~ 114 (229)
+.+++-...+|..+++||.+++..++++..|.++|+.|+|||++++++.+.+++++++||+|||||+||...+++++++.
T Consensus 61 ~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~ 140 (306)
T 3g33_B 61 CVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCI 140 (306)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHH
T ss_pred hcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 34444455799999999999999999999999999999999999999999999999999999999999986568999876
Q ss_pred HHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCcc----HHHHHHHHHHHHHHhCC
Q psy1168 115 TCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHE----DQLLALAWRVINDSLRT 190 (229)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~----~~i~~~a~~~~~~~~~~ 190 (229)
.+. ....+++|++||+.||++|+|++.+++|++|+.+|++.++.. ..+.+.|+.++++++.+
T Consensus 141 ~~~--------------~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d 206 (306)
T 3g33_B 141 YTD--------------HAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATD 206 (306)
T ss_dssp HTT--------------TSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHC
T ss_pred Hhc--------------cCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 532 123489999999999999999999999999999999998764 23678899999999999
Q ss_pred cccccccHHHHHHHHHHHhcccCccc
Q psy1168 191 DVCLLYPPYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 191 ~~~l~~~P~~IA~aai~~A~~~~~~~ 216 (229)
+.++.|+|+.||+|||++|...++..
T Consensus 207 ~~~l~~~PS~IAaAai~lA~~~l~~~ 232 (306)
T 3g33_B 207 YTFAMYPPSMIATGSIGAAVQGLGAC 232 (306)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHTCC--
T ss_pred hhhccCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988743
No 10
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=3.6e-31 Score=218.98 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~ 121 (229)
.++|..+++||.+++..++++.+|.++|+.|+|||++++++.+.+.+++++||+|||||+||...+++++++..+.
T Consensus 48 ~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~---- 123 (257)
T 1g3n_C 48 SHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA---- 123 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC----
Confidence 4689999999999999999999999999999999999999999999999999999999999974458999876532
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccH----HHHHHHHHHHHHHhCCccccccc
Q psy1168 122 NKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHED----QLLALAWRVINDSLRTDVCLLYP 197 (229)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~----~i~~~a~~~~~~~~~~~~~l~~~ 197 (229)
....+++|++||+.||++|+|++.+++|++|+.+|++.++.+. .+.+.|+.+++.++.+..++.|+
T Consensus 124 ----------~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~ 193 (257)
T 1g3n_C 124 ----------DSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLP 193 (257)
T ss_dssp ----------TCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSC
T ss_pred ----------CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcC
Confidence 1234899999999999999999999999999999999998653 34678999999999999999999
Q ss_pred HHHHHHHHHHHhcccCccc
Q psy1168 198 PYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 198 P~~IA~aai~~A~~~~~~~ 216 (229)
|+.||+||+++|...++.+
T Consensus 194 PS~iAaAai~lA~~~l~~~ 212 (257)
T 1g3n_C 194 ASIISAAGCALLVPANVIP 212 (257)
T ss_dssp HHHHHHHHHHHHCCGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999988753
No 11
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.97 E-value=9.1e-32 Score=222.93 Aligned_cols=160 Identities=21% Similarity=0.199 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~ 121 (229)
.++|..+++||.+++..++++..|.++|+.|+|||++++++.+.+.+++++||+|||||.||...+++++++..+.
T Consensus 36 ~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~---- 111 (260)
T 2cch_B 36 NSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITD---- 111 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHc----
Confidence 4689999999999999999999999999999999999999999999999999999999999994359999976532
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccH-HHHHHHHHHHHHHhCCcc-cccccHH
Q psy1168 122 NKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHED-QLLALAWRVINDSLRTDV-CLLYPPY 199 (229)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~-~i~~~a~~~~~~~~~~~~-~l~~~P~ 199 (229)
....+++|++||+.||++|+|++.+++|++|+.+|++.++.+. .+.+.|+.++++++.+.. ++.|+|+
T Consensus 112 ----------~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps 181 (260)
T 2cch_B 112 ----------DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPS 181 (260)
T ss_dssp ----------SSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHH
T ss_pred ----------CCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHH
Confidence 1234899999999999999999999999999999999998765 899999999999987776 9999999
Q ss_pred HHHHHHHHHhcccCcc
Q psy1168 200 QIAIGECSFSFTPHVI 215 (229)
Q Consensus 200 ~IA~aai~~A~~~~~~ 215 (229)
.||+||+++|+..++.
T Consensus 182 ~iAaAai~lA~~~~~~ 197 (260)
T 2cch_B 182 VIAGAAFHLALYTVTG 197 (260)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999987764
No 12
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.97 E-value=2.9e-31 Score=219.22 Aligned_cols=163 Identities=16% Similarity=0.174 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHH
Q psy1168 38 DEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQ 117 (229)
Q Consensus 38 ~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~ 117 (229)
++-..++|...++||.+++..++++..|.++|+.|+|||++++++.+.+.+++++||+|||||+||...+++++++..+.
T Consensus 45 ~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~ 124 (254)
T 2f2c_A 45 TEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC 124 (254)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhC
Confidence 33345689999999999999999999999999999999999999999999999999999999999964458999865432
Q ss_pred HHHHhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccHH----HHHHHHHHHHHHhCCccc
Q psy1168 118 TVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQ----LLALAWRVINDSLRTDVC 193 (229)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~~----i~~~a~~~~~~~~~~~~~ 193 (229)
+ ...+++|++||+.||++|+|++.+++|++|+.+|++.++.+.+ +.+.|+.+++.++.+..+
T Consensus 125 ~--------------~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~ 190 (254)
T 2f2c_A 125 D--------------CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNI 190 (254)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGG
T ss_pred C--------------CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcch
Confidence 1 2348999999999999999999999999999999999987543 467899999999999999
Q ss_pred ccccHHHHHHHHHHHhcccCc
Q psy1168 194 LLYPPYQIAIGECSFSFTPHV 214 (229)
Q Consensus 194 l~~~P~~IA~aai~~A~~~~~ 214 (229)
+.|+|+.||+||+++|...++
T Consensus 191 ~~~~PS~iAaAai~la~~~~~ 211 (254)
T 2f2c_A 191 ALLSPGLICAGGLLTTIETDN 211 (254)
T ss_dssp TTSCHHHHHHHHHHHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHhcC
Confidence 999999999999999998753
No 13
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.97 E-value=1.9e-30 Score=216.22 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVK 121 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~ 121 (229)
.++|..+++||.+++.+++++..|.++|+.|+|||++++++.+.+.+++++||+|||||+||...+++++++..+.
T Consensus 54 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~---- 129 (271)
T 2w96_A 54 PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTD---- 129 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc----
Confidence 4588999999999999999999999999999999999999999999999999999999999983248999876421
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccHH----HHHHHHHHHHHHhCCccccccc
Q psy1168 122 NKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQ----LLALAWRVINDSLRTDVCLLYP 197 (229)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~~----i~~~a~~~~~~~~~~~~~l~~~ 197 (229)
....+++|++||+.||++|+|++.+++|++|+.+|++.++.+.+ +.+.|+.+++++..+..++.|+
T Consensus 130 ----------~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~ 199 (271)
T 2w96_A 130 ----------NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNP 199 (271)
T ss_dssp ----------TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSC
T ss_pred ----------CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 12358999999999999999999999999999999999987644 3467999999998888899999
Q ss_pred HHHHHHHHHHHhcccCcc
Q psy1168 198 PYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 198 P~~IA~aai~~A~~~~~~ 215 (229)
|+.||+|||++|...++.
T Consensus 200 PS~iAaAai~lA~~~l~~ 217 (271)
T 2w96_A 200 PSMVAAGSVVAAVQGLNL 217 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999999987764
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.96 E-value=8.4e-29 Score=197.48 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHH
Q psy1168 41 YQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVV 120 (229)
Q Consensus 41 e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~ 120 (229)
|+.+ ..++++|.++|.+|+||+.+..+|..||+||+..+.++++++..+++||+|+|||.++.|+ +++|+..++.
T Consensus 6 er~l-~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~-~l~di~~~~~--- 80 (200)
T 1ais_B 6 ERNL-AFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPR-TLDEIADIAR--- 80 (200)
T ss_dssp --CH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHTT---
T ss_pred HHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHC---
Confidence 4444 4799999999999999999999999999999999999999999999999999999999986 9999977532
Q ss_pred HhhhcccccccchhhHHHHHHHHHHHHHHcCcceee--cCChHHHHHHHHHhCccHHHHHHHHHHHHHHhCCcccccccH
Q psy1168 121 KNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIV--YQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPP 198 (229)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~--~~P~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P 198 (229)
..+.+|..+|+.+++.|||++.+ .+|+.|+.+|++.+++++++.+.|+.+++++..++++.+++|
T Consensus 81 -------------v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P 147 (200)
T 1ais_B 81 -------------VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSP 147 (200)
T ss_dssp -------------SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCH
T ss_pred -------------CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCH
Confidence 23688999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCccc
Q psy1168 199 YQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 199 ~~IA~aai~~A~~~~~~~ 216 (229)
+.||+||||+|+..+|..
T Consensus 148 ~~iAaAaly~A~~~~~~~ 165 (200)
T 1ais_B 148 AGLVAAALYIASLLEGEK 165 (200)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999999998754
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=1.6e-28 Score=201.99 Aligned_cols=160 Identities=12% Similarity=0.133 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHH
Q psy1168 37 SDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116 (229)
Q Consensus 37 s~~~e~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~ 116 (229)
+++-..++|...++||.+++..++++++|.++|+.|+|||++++++...+.+++++||+|||+|+||...+++++++..+
T Consensus 41 q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~ 120 (252)
T 1f5q_B 41 DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLC 120 (252)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHh
Confidence 34445678999999999999999999999999999999999999999999999999999999999998656889987643
Q ss_pred HHHHHhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccH----HHHHHHHHHHHHHhCCcc
Q psy1168 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHED----QLLALAWRVINDSLRTDV 192 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~----~i~~~a~~~~~~~~~~~~ 192 (229)
. ....+++|++||+.||++|+|++.++||++|+.+|++.++.+. .+...|..+++.++.+.-
T Consensus 121 ~--------------~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~ 186 (252)
T 1f5q_B 121 G--------------GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGR 186 (252)
T ss_dssp C--------------TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred C--------------CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchh
Confidence 2 2234899999999999999999999999999999999987653 366788999999988888
Q ss_pred cccccHHHHHHHHHHHhc
Q psy1168 193 CLLYPPYQIAIGECSFSF 210 (229)
Q Consensus 193 ~l~~~P~~IA~aai~~A~ 210 (229)
++.|+||.||+||+..+.
T Consensus 187 ~l~~~PS~iAaaa~~~~l 204 (252)
T 1f5q_B 187 SAMKRPVLITLACMHLTM 204 (252)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHh
Confidence 999999999999976664
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=1.6e-28 Score=205.59 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYAR-NSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVV 120 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~-~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~ 120 (229)
.++|..+++||.+++.+++++..|.++|+.|+|||+++ +++.+.+.+++++||+|||||+||...+++++++..+.
T Consensus 47 ~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~--- 123 (283)
T 1w98_B 47 PKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD--- 123 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc---
Confidence 35889999999999999999999999999999999998 68999999999999999999999985458999876421
Q ss_pred HhhhcccccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHHhCccH-----------HHHHHHHHHHHHHhC
Q psy1168 121 KNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHED-----------QLLALAWRVINDSLR 189 (229)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~l~~~~-----------~i~~~a~~~~~~~~~ 189 (229)
....+++|++||+.||++|+|++.+++|++|+.+|++.++.++ .....+..+++.++.
T Consensus 124 -----------~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~ 192 (283)
T 1w98_B 124 -----------GACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVL 192 (283)
T ss_dssp -----------TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 1234899999999999999999999999999999999876431 233456678899988
Q ss_pred CcccccccHHHHHHHHHHHhcc
Q psy1168 190 TDVCLLYPPYQIAIGECSFSFT 211 (229)
Q Consensus 190 ~~~~l~~~P~~IA~aai~~A~~ 211 (229)
+..++.|+|+.||+||+++|+.
T Consensus 193 d~~~l~~~PS~iAaAai~la~~ 214 (283)
T 1w98_B 193 DVDCLEFPYGILAASALYHFSS 214 (283)
T ss_dssp SGGGGGSCHHHHHHHHHHHTSC
T ss_pred hhhhhcCCHHHHHHHHHHHHHC
Confidence 8889999999999999999975
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-26 Score=198.74 Aligned_cols=154 Identities=13% Similarity=0.032 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhc
Q psy1168 46 IFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLN 125 (229)
Q Consensus 46 ~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~ 125 (229)
..+...|.++|..|+||..+..+|..||+|++..+.+++++...+++||||+|||.++.|+ +++++..++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~pr-tl~ei~~~~~-------- 197 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVAR-TFKEIQSLIH-------- 197 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSC-CHHHHHHSSS--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCc-cHHHHHHHHC--------
Confidence 4678999999999999999999999999999999999999999999999999999999996 9999876532
Q ss_pred ccccccchhhHHHHHHHHHHHHHHcC------------cceeecCChHHHHHHHHHhCccHHHHHHHHHHHHHHhCCccc
Q psy1168 126 YAYAQEFPYRTNHILECEFYLLENLD------------CCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVC 193 (229)
Q Consensus 126 ~~~~~~~~~~~~~i~~~E~~iL~~L~------------fdl~~~~P~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~ 193 (229)
..+++|.++++.|++.|+ |++.+.+|++|+.+|++.|+++.++.+.|+.+++++..++++
T Consensus 198 --------v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~ 269 (345)
T 3k7a_M 198 --------VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEI 269 (345)
T ss_dssp --------CCSHHHHHHHHHHHHHHTCC----------------------------------------------------
T ss_pred --------CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchh
Confidence 236789999999999998 999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcccCccc
Q psy1168 194 LLYPPYQIAIGECSFSFTPHVIA 216 (229)
Q Consensus 194 l~~~P~~IA~aai~~A~~~~~~~ 216 (229)
.+++|+.||+||||+|+.+++..
T Consensus 270 ~Gr~P~~IAaAaIylAa~~~~~~ 292 (345)
T 3k7a_M 270 AGKSPITIAVVSIYLNILLFQIP 292 (345)
T ss_dssp -----------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999998754
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.87 E-value=1.7e-22 Score=173.00 Aligned_cols=153 Identities=13% Similarity=0.032 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhc
Q psy1168 46 IFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLN 125 (229)
Q Consensus 46 ~~~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~ 125 (229)
..+...|.++|..|+||..+..+|..+|++++..+.+++.....+++||||+|||.++.|+ +++++..++.
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~pr-tl~eI~~~~~-------- 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVAR-TFKEIQSLIH-------- 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBC-CHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCc-cHHHHHHHhC--------
Confidence 4577899999999999999999999999999999999999999999999999999999997 9999877532
Q ss_pred ccccccchhhHHHHHHHHHHHHHHcCcc------------eeecCChHHHHHHHHHhCccHHHHHHHHHHHHHHhCCccc
Q psy1168 126 YAYAQEFPYRTNHILECEFYLLENLDCC------------LIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVC 193 (229)
Q Consensus 126 ~~~~~~~~~~~~~i~~~E~~iL~~L~fd------------l~~~~P~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~ 193 (229)
..+++|.+..+.|.+.|+.. +...+|.+|+.+|+..|+++.++.+.|+.+++.+....+.
T Consensus 198 --------v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~ 269 (345)
T 4bbr_M 198 --------VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEI 269 (345)
T ss_dssp --------CCTTHHHHHHHHHHHCC-------------------------------------------------------
T ss_pred --------CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccc
Confidence 12577888889999999864 6778999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcccCcc
Q psy1168 194 LLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 194 l~~~P~~IA~aai~~A~~~~~~ 215 (229)
.+.+|..||+||||+|+.+++.
T Consensus 270 ~GR~P~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 270 AGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ----------------------
T ss_pred cCCChHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998864
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.43 E-value=1.2e-06 Score=69.02 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhcccc
Q psy1168 49 ANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAY 128 (229)
Q Consensus 49 ~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~~~~ 128 (229)
..+|.++|+.|+++..+..+|..++++........+++|..+++||+|+||+..+.++ +.+++..++.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~-t~~ei~~~~~----------- 176 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR-TQREVAEVAR----------- 176 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHT-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHhC-----------
Confidence 3788999999999999999999999999988888899999999999999999999875 8888866532
Q ss_pred cccchhhHHHHHHHHHHHHHHcCcce
Q psy1168 129 AQEFPYRTNHILECEFYLLENLDCCL 154 (229)
Q Consensus 129 ~~~~~~~~~~i~~~E~~iL~~L~fdl 154 (229)
....+|...-..+.+.||.++
T Consensus 177 -----vs~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 177 -----VTEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp -----CCHHHHHHHHHHHHHHHTCCC
T ss_pred -----CCHHHHHHHHHHHHHHcCCCC
Confidence 124566677777778887654
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.00 E-value=3.1e-05 Score=61.09 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHH
Q psy1168 49 ANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLST 115 (229)
Q Consensus 49 ~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~ 115 (229)
..+|.++++.|+++..+..+|..++.+-+...-..++.|..||+||+|+||+..+.++ +.+++..+
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~-~~~~i~~~ 168 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKR-TQKEIGDI 168 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCC-CHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCC-CHHHHHHH
Confidence 4778899999999999999999999999887778899999999999999999998875 77777544
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.82 E-value=0.00018 Score=59.27 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc---ccccCCchhHHHHHHHHHhhcccccccchHHHHHHHHHHHHhhhcc
Q psy1168 50 NFIQILGEQLKLRQQVIATATVYFKRFYARN---SLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNY 126 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~---s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~~~~~~~~~~ 126 (229)
+|+.++.+.-+++..+.-.|.+|++|+..+. .+.....+-+.++|+.+|+|+-+....+-+....+. +
T Consensus 79 ~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-G-------- 149 (293)
T 2pmi_B 79 NYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-G-------- 149 (293)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH-T--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc-C--------
Confidence 6788888899999999999999999998743 234567888999999999999887543434433321 1
Q ss_pred cccccchhhHHHHHHHHHHHHHHcCcceeecCChHHHHHHHHH
Q psy1168 127 AYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQD 169 (229)
Q Consensus 127 ~~~~~~~~~~~~i~~~E~~iL~~L~fdl~~~~P~~~l~~~~~~ 169 (229)
...+++-.+|+..|..|+|++.+. +..|...+...
T Consensus 150 -------isl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 150 -------VRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp -------SCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred -------cCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 236889999999999999999876 44565544443
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.71 E-value=0.00025 Score=60.37 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHH
Q psy1168 48 FANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLST 115 (229)
Q Consensus 48 ~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~ 115 (229)
..++|.++|.+|+++..+..+|..+.++.....-..+..|.-||+||||+||+..+.++ +.+++..+
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~-t~~eIa~v 301 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI-TAAKVGQT 301 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCC-CHHHHHHH
Confidence 44789999999999999999999999998877667789999999999999999998764 77776554
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00027 Score=60.18 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccccccchHHHHHH
Q psy1168 49 ANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLST 115 (229)
Q Consensus 49 ~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~ 115 (229)
..+|.++|..|+++..+..+|..+.++.....-..++.|..||+||||+|++..+.++ +.+++..+
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~-t~~eIa~~ 301 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPI-TAAKVGQT 301 (345)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHH
Confidence 4788899999999999999999999999877777889999999999999999987764 56666443
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=96.07 E-value=0.014 Score=46.70 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccc
Q psy1168 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF 104 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~ 104 (229)
+++.+.++.++++..+...|..+...-+....+.++.|..||+||+|+|++..+.
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 5677777788999999999999999988777788899999999999999998764
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.17 E-value=0.021 Score=47.09 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhccccc
Q psy1168 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG 105 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~ 105 (229)
+++.++++.++.+..+...|..+...-+....+-.+.|..||+||+|+|++..+.+
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~ 214 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKD 214 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCC
Confidence 56777788888888999999999998887777778999999999999999987653
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.03 E-value=0.048 Score=43.98 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCH----HHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhccccc
Q psy1168 50 NFIQILGEQLKLRQ----QVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG 105 (229)
Q Consensus 50 ~~I~~~~~~l~l~~----~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~ 105 (229)
+++.++++.++.+. .+...|..+...-+....+..+.|..||+||+++|++..+.+
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 212 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE 212 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCC
Confidence 57778888899887 578888888888887777888999999999999999987653
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=94.22 E-value=0.1 Score=42.37 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhccccc
Q psy1168 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG 105 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~~ 105 (229)
+|+.+.++.++++..+...|..+...-+....+.++.|..+|+||+++|++..+.+
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 56777888899999988889888888877777888999999999999999987654
No 28
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=94.17 E-value=0.11 Score=41.82 Aligned_cols=56 Identities=5% Similarity=-0.078 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhCccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 160 YRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 160 ~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
.+++......+++++++...|..++...+.....-.+++..+|+||+++|++....
T Consensus 35 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 36788888999999999999999999988777778899999999999999998765
No 29
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=94.02 E-value=0.11 Score=35.23 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcc-----ccccCCchhHHHHHHHHHhhcccccccchHHHHH
Q psy1168 52 IQILGEQLKLRQQVIATATVYFKRFYARN-----SLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLS 114 (229)
Q Consensus 52 I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~-----s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~ 114 (229)
|.++|..++++. +...|..++++|=..- .-.+.+.-.+.+||+|.|||.....+ +-..++.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kV-dK~KL~~ 71 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKV-DKNKMVA 71 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCC-CHHHHHH
Confidence 678999999988 6677889999985431 11245566788899999999988764 5455544
No 30
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=93.55 E-value=0.13 Score=42.98 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHHHHHhC--ccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 161 RPLLQLVQDIG--HEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 161 ~~l~~~~~~l~--~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
.+|..++..++ +++.+...|..++...+.....-.++|..||+||+|+|++...+
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~ 118 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF 118 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC
Confidence 45677888888 99999999999999988877778899999999999999998765
No 31
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=92.89 E-value=0.38 Score=37.29 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc---ccccCCchhHHHHHHHHHhhcccccccchHHHH
Q psy1168 48 FANFIQILGEQLKLRQQVIATATVYFKRFYARN---SLKCIDPLLLAPTCVFLASKVEEFGVISSSRLL 113 (229)
Q Consensus 48 ~~~~I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~---s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li 113 (229)
+.+.|+.+.++-++|..++..|+.+-+.|.-.+ .-+-.+++.|++||+.+|+--...|+ ++.++-
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~Pi-plaE~r 82 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPL-PLAEVR 82 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCc-cHHHHH
Confidence 346678899999999999999999999997543 22335688999999999999888885 777763
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=92.81 E-value=0.16 Score=43.20 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhCccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 160 YRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 160 ~~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
.++|......+++.+++...|..++...+.....-.+++..||+||+|+|++....
T Consensus 42 v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 45677778888899999999999999988777777899999999999999998765
No 33
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=91.71 E-value=0.51 Score=37.96 Aligned_cols=57 Identities=12% Similarity=-0.058 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHHhhccc-cccCCchhHHHHHHHHHhhccccc
Q psy1168 49 ANFIQILGEQLKLRQ-QVIATATVYFKRFYARNS-LKCIDPLLLAPTCVFLASKVEEFG 105 (229)
Q Consensus 49 ~~~I~~~~~~l~l~~-~~~~~A~~~~~Rf~~~~s-~~~~~~~~v~~acl~LA~K~ee~~ 105 (229)
.+|+.++++.++.+. .+...|..+...-+.... +.++.|..+|+||+++|++..+.+
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~ 198 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQ 198 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence 367888888888876 677777777776554444 678999999999999999987654
No 34
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=90.13 E-value=1.4 Score=37.89 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhh--ccccccCCchhHHHHHHHHHhhcccccccchHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQ-QVIATATVYFKRFYA--RNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~-~~~~~A~~~~~Rf~~--~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~ 116 (229)
+++-..+..-|.++|++|+++. +....--+.|+..+. ..-+++.|..-+.+.|+|.-||+..... +.++|+..+
T Consensus 276 rKvy~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~-tFk~Ii~~Y 352 (411)
T 4ell_A 276 KKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL-KFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCC-CHHHHHHHH
Confidence 3444457778999999998765 333333344444443 3456788899999999999999998764 899998754
No 35
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=89.87 E-value=1.5 Score=36.95 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhh--ccccccCCchhHHHHHHHHHhhcccccccchHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQ-QVIATATVYFKRFYA--RNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~-~~~~~A~~~~~Rf~~--~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~ 116 (229)
+++-..+..-+.++|++|+++. ......-+.|...+. ..-+++.|..-+.+.|+|.-||+..... +.++++..+
T Consensus 212 rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~-tF~~Ii~~Y 288 (347)
T 2r7g_A 212 KKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL-KFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCC-CHHHHHHHH
Confidence 3444446677999999998765 344445555655554 3466788999999999999999998764 999998764
No 36
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=89.37 E-value=2 Score=34.22 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCHHH----HHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcc
Q psy1168 50 NFIQILGEQLKLRQQV----IATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVE 102 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~----~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~e 102 (229)
+|+...++.++.+..+ ...|..++..-.....+..+.|..+|+||+++|.+..
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 4566666777777654 3356666665555556778999999999999999985
No 37
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=89.05 E-value=0.66 Score=37.55 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCHHHH----HHHHHHHHHHhhccccccCCchhHHHHHHHHHhhccc
Q psy1168 50 NFIQILGEQLKLRQQVI----ATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEE 103 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~~----~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee 103 (229)
+|+..+.+.++++..+. ..|..++..-.....+.++.|..+|+||+++|++..+
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~ 216 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLN 216 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhC
Confidence 66777788888887653 3455555544334445678999999999999997653
No 38
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=88.78 E-value=2.6 Score=34.75 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCHH----HHHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccc
Q psy1168 50 NFIQILGEQLKLRQQ----VIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF 104 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~----~~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~ 104 (229)
+|+..+.+.++.+.. +...|..++..-+....+..+.|..||+||+++|.+.-+.
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~ 231 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA 231 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 456666677776543 3455666666656666777899999999999999997664
No 39
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=88.70 E-value=0.54 Score=37.74 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCCHHH----HHHHHHHHHHHhhccccccCCchhHHHHHHHHHhhcccc
Q psy1168 50 NFIQILGEQLKLRQQV----IATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF 104 (229)
Q Consensus 50 ~~I~~~~~~l~l~~~~----~~~A~~~~~Rf~~~~s~~~~~~~~v~~acl~LA~K~ee~ 104 (229)
+|+...++.++.+..+ ...|..++..-.....+..+.|..+|+||+++|.+..+.
T Consensus 153 ~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 153 DVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 5566666667766543 345666666655556677899999999999999998763
No 40
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=88.35 E-value=1 Score=37.33 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcc---ccccCCchhHHHHHHHHHhhcccccccchHHHHHHH
Q psy1168 52 IQILGEQLKLRQQVIATATVYFKRFYARN---SLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116 (229)
Q Consensus 52 I~~~~~~l~l~~~~~~~A~~~~~Rf~~~~---s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~ 116 (229)
..++|+.|+++..|...|...|++.-..- +...-+....-.||||.||...+..-.++.++++.+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 45789999999999999999999976531 122234555666779999987666556899988764
No 41
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=86.64 E-value=3.8 Score=37.47 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhh--ccccccCCchhHHHHHHHHHhhcccccccchHHHHHHHH
Q psy1168 42 QKIFIFFANFIQILGEQLKLRQ-QVIATATVYFKRFYA--RNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQ 117 (229)
Q Consensus 42 ~~~r~~~~~~I~~~~~~l~l~~-~~~~~A~~~~~Rf~~--~~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~~ 117 (229)
+++-..+..-|.++|++|+++. ......-+.|+..+. ..-+++.|..-+++.|+|.-||+..... +.++|+..+.
T Consensus 521 rKvy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~l-tFk~Ii~~Yr 598 (656)
T 4elj_A 521 KKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL-KFKIIVTAYK 598 (656)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCc-CHHHHHHHHH
Confidence 4554557788999999998774 344455556666554 3466788999999999999999998764 9999988643
No 42
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=81.79 E-value=2.1 Score=34.85 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHhCC-cccccccHHHHHHHHHHHhcccCcc
Q psy1168 161 RPLLQLVQDIGHEDQLLALAWRVINDSLRT-DVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 161 ~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~-~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
+++......+++..+...+|..+++..+.. ...-......+|+||+++|++....
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~ 110 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI 110 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 456666777788899999999999887654 3445788999999999999997654
No 43
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=72.29 E-value=4.7 Score=32.19 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHhCCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 161 RPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 161 ~~l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
+++......+++..+..-+|..+++..+...-.-......+|++|+++|++....
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~ 108 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAY 108 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666777888888899999888866444445677899999999999997654
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=71.30 E-value=9.1 Score=34.96 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhc-----cccccCCchhHHHHHHHHHhhcccccccchHHHHHHH
Q psy1168 52 IQILGEQLKLRQQVIATATVYFKRFYAR-----NSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116 (229)
Q Consensus 52 I~~~~~~l~l~~~~~~~A~~~~~Rf~~~-----~s~~~~~~~~v~~acl~LA~K~ee~~~~~l~~li~~~ 116 (229)
..++|+.|+++..|...|...|..--.. .++.+...+..+ .++|.||.+++..+ ++.++++.+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~a-C~ly~~~~~~gn~v-sLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGI-CIFIAAVDLDEMSF-TFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHH-HHHHHHHHTTCCCS-CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhh-hhheeeeeccCCee-eHHHHHHHh
Confidence 4578999999999999999999988742 223333333333 34555666666654 999988765
No 45
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=31.78 E-value=88 Score=25.60 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=35.6
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHHhCCccc---ccccHHHHHHHHHHHhcc
Q psy1168 163 LLQLVQDIGHEDQLLALAWRVINDSLRTDVC---LLYPPYQIAIGECSFSFT 211 (229)
Q Consensus 163 l~~~~~~l~~~~~i~~~a~~~~~~~~~~~~~---l~~~P~~IA~aai~~A~~ 211 (229)
...+|+.|+++..+.+.||...+.+...+.. ..-.....-.||+|+|+.
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~ 57 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAV 57 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhh
Confidence 4567899999999999999999997663222 233477778888999984
No 46
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=26.72 E-value=26 Score=18.21 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=8.6
Q ss_pred cCCcccccCCCCC
Q psy1168 217 EVGTLGEVGESFP 229 (229)
Q Consensus 217 ~~~~~~ev~~~~~ 229 (229)
-++.+|||.+|-|
T Consensus 10 qsgsttevedskp 22 (36)
T 1o9a_B 10 QSGSTTEVEDSKP 22 (36)
T ss_dssp ---CCBCCCCSCC
T ss_pred cCCCceeeecCCc
Confidence 3788999999865
No 47
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=24.43 E-value=1.5e+02 Score=25.93 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q psy1168 52 IQILGEQLKLRQQVIATATVYFKRF 76 (229)
Q Consensus 52 I~~~~~~l~l~~~~~~~A~~~~~Rf 76 (229)
+...+...++|..++..|..||++|
T Consensus 410 vv~~a~~~gip~P~~s~al~y~~~~ 434 (484)
T 4gwg_A 410 AVSTGVQAGIPMPCFTTALSFYDGY 434 (484)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7778889999999999999999999
No 48
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=23.83 E-value=1.3e+02 Score=25.14 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHcCcceeec--------CC-------------------hHHHHHHHHHhCcc-HHHHHHHHHHHH
Q psy1168 134 YRTNHILECEFYLLENLDCCLIVY--------QP-------------------YRPLLQLVQDIGHE-DQLLALAWRVIN 185 (229)
Q Consensus 134 ~~~~~i~~~E~~iL~~L~fdl~~~--------~P-------------------~~~l~~~~~~l~~~-~~i~~~a~~~~~ 185 (229)
...+.+-..|..||+.+.|.-+.+ .+ ..-+..+|+.++.. .++.+.+|.+++
T Consensus 166 elvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe 245 (347)
T 2r7g_A 166 EMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQ 245 (347)
T ss_dssp HHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 347788889999999999954331 11 11123344445433 467888999988
Q ss_pred HHh--CCcccccccHHHHHHHHHHHhcccCcc
Q psy1168 186 DSL--RTDVCLLYPPYQIAIGECSFSFTPHVI 215 (229)
Q Consensus 186 ~~~--~~~~~l~~~P~~IA~aai~~A~~~~~~ 215 (229)
.++ .+.++....-.+|-+.|||..++..+.
T Consensus 246 ~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~ 277 (347)
T 2r7g_A 246 HTLQNEYELMRDRHLDQIMMCSMYGICKVKNI 277 (347)
T ss_dssp HHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhChHhhcCCcHHHHHHHHHHHHHHhcCC
Confidence 876 467888889999999999999987764
No 49
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A* 1uc5_A* 3auj_A* 1iwp_A* 1mmf_A*
Probab=20.19 E-value=85 Score=27.08 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=39.4
Q ss_pred ccccchh-hhccCCcccHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q psy1168 6 TQGRFYP-EWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQV 65 (229)
Q Consensus 6 ~~~~~~~-~~~~~w~f~~~~l~~~~~~~~~~~s~~~e~~~r~~~~~~I~~~~~~l~l~~~~ 65 (229)
++++.|+ .....|+.-..+|.- -.|...+++++.-.+|.++++-|+.+-+.|+||.-|
T Consensus 374 FagSN~daeD~DDy~vlQRDl~v--dgGl~pV~ee~vi~vRnkAarAiQavF~~LGlp~it 432 (554)
T 1eex_A 374 FAGSNEDAEDFDDYNVIQRDLKV--DGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPIT 432 (554)
T ss_dssp TSCCSSCGGGHHHHHHHHHHHTC--CCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred ccCCCCChhhhhHHHHHHHHhcc--CCCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4455555 444444432222221 135677889999999999999999999999999643
Done!