RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1168
(229 letters)
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 194 bits (494), Expect = 5e-62
Identities = 133/189 (70%), Positives = 161/189 (85%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
QW+LD+QDL++ER+ DL LS+EEY K+ IFF N IQ LGE LKLRQQVIATATVYFKR
Sbjct: 14 LQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKR 73
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYR 135
FYAR SLK IDP+L+APTCVFLASKVEEFGV+S++RL++ +V+K + +YA+ +EFPYR
Sbjct: 74 FYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYR 133
Query: 136 TNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLL 195
NHILECEFYLLE +DCCLIVY PYRPLLQ VQD+G ED LL LAWR++ND+ RTD+CLL
Sbjct: 134 MNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLL 193
Query: 196 YPPYQIAIG 204
YPP+ IA+
Sbjct: 194 YPPFMIALA 202
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 165 bits (418), Expect = 6e-51
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 16 QQWVLDRQDL--IRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYF 73
W D++DL + L + A FI +G +L L +AT +YF
Sbjct: 13 PCWYWDKKDLAHTPSQLEGLDP---ATEARYRREGARFIFDVGTRLGLHYDTLATGIIYF 69
Query: 74 KRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFP 133
RFY +S K + C+FLA KVEE + +T + + Q
Sbjct: 70 HRFYMFHSFKQFPRYVTGACCLFLAGKVEETPK----KCKDIIKTARSLLNDVQFGQFGD 125
Query: 134 YRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHE----DQLLALAWRVINDSLR 189
++ E LL+ + L V PY+ LL+ + + + +L+ +AW +NDSL
Sbjct: 126 DPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLC 185
Query: 190 TDVCLLYPPYQIAIG 204
T + L + P IA+
Sbjct: 186 TTLSLQWEPEIIAVA 200
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 167 bits (423), Expect = 7e-51
Identities = 58/228 (25%), Positives = 87/228 (38%), Gaps = 45/228 (19%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIRERK-------------------HDLSILSDEEYQKIF 45
S+Q R W ++ + + +D L E +
Sbjct: 5 SSQKR-------HWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLC 57
Query: 46 IFFANFIQILGEQLK--LRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEE 103
++ + K + + V+ TA +YFKRFY NS+ P ++ TC FLA KV+E
Sbjct: 58 KYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117
Query: 104 FGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPL 163
F V + V N ILE E L++ L+ LIV+ PYRP
Sbjct: 118 FNV--------SSPQFVGNL--RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPF 167
Query: 164 LQLVQDIG-------HEDQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
+ D+ + + L A +N TD LLY P QIA+
Sbjct: 168 EGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALT 215
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 168 bits (425), Expect = 8e-51
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 5/192 (2%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
++W R+ L + D+E AN +Q +G++L + Q I TA VY R
Sbjct: 10 KRWYFTREQLENSPSRRFGVDPDKEL-SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHR 68
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTV--VKNKLNYAYAQEFP 133
FY S +AP +FLA+KVEE ++ T + L ++ +
Sbjct: 69 FYMIQSFTRFPGNSVAPAALFLAAKVEEQPK-KLEHVIKVAHTCLHPQESLPDTRSEAYL 127
Query: 134 YRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLR-TDV 192
+ ++ E +L+ L L + P+ +++ Q + L ++ + +SL T
Sbjct: 128 QQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTF 187
Query: 193 CLLYPPYQIAIG 204
L Y P +A
Sbjct: 188 SLQYTPPVVACV 199
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 160 bits (405), Expect = 4e-49
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 19/190 (10%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
Q L DL L K I+ +Q G++L+LRQ+V+ATA V +R
Sbjct: 8 TQLFLST---------DLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRR 58
Query: 76 FYARNSL-KCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPY 134
+ + + K L TC++L+ KVEE V + + N+ N ++ +
Sbjct: 59 YMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRT---------ICNEANDLWSLKVKL 109
Query: 135 RTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCL 194
++I E EF ++ LD LIV+ PY L Q D + L AW ++NDS + +CL
Sbjct: 110 SRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCL 169
Query: 195 LYPPYQIAIG 204
+ P+Q+A
Sbjct: 170 MAHPHQLAYA 179
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 150 bits (379), Expect = 4e-45
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Query: 16 QQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKR 75
+W R+ L + +D+E AN IQ +G++L + Q I TA VY R
Sbjct: 3 SRWFFTREQLENTPSRRCGVEADKEL-SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHR 61
Query: 76 FYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAY-AQEFPY 134
FY +S + +++ T +FLA+KVEE + + + +
Sbjct: 62 FYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQ 121
Query: 135 RTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSL-RTDVC 193
+T ++ E +L+ L + + P+ +++ Q + L ++ + +SL T C
Sbjct: 122 QTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFC 181
Query: 194 LLYPPYQIAIG 204
L Y P IA
Sbjct: 182 LQYKPTVIACV 192
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 40.2 bits (94), Expect = 2e-04
Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 18/150 (12%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116
+ L+ V A + + + A + +A KV + I +++L C
Sbjct: 61 KDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLC 120
Query: 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG----H 172
A + +L E L+ L + ++ +
Sbjct: 121 --------GGATTAD------KLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRED 166
Query: 173 EDQLLALAWRVINDSLRTDVCLLYPPYQIA 202
+ L I +L + P I
Sbjct: 167 YLNIYNLCRPKIFCALCDGRSAMKRPVLIT 196
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 38.5 bits (90), Expect = 9e-04
Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 18/150 (12%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116
E+ K ++V A Y RF + +K LL TC+F+ASK++E +++
Sbjct: 69 EEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAE------ 122
Query: 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG----H 172
+ R +L+ E L+ L L P+ + + + +
Sbjct: 123 --------KLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN 174
Query: 173 EDQLLALAWRVINDSLRTDVCLLYPPYQIA 202
+ + A + + PP +A
Sbjct: 175 KQIIRKHAQTFVALCATDVKFISNPPSMVA 204
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 38.2 bits (89), Expect = 0.001
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 18/150 (12%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116
E+ + ++V A Y R+ + + LL C+ LASK+ E T
Sbjct: 83 EEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRE-----------TT 131
Query: 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIG----H 172
++ + + + E +L L L + L ++ +
Sbjct: 132 PLTIE---KLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188
Query: 173 EDQLLALAWRVINDSLRTDVCLLYPPYQIA 202
+ + A + +YPP IA
Sbjct: 189 QALVKKHAQTFLALCATDYTFAMYPPSMIA 218
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 37.0 bits (86), Expect = 0.003
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 18/154 (11%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116
++ L V+A A R + C+ +ASK+ IS+S
Sbjct: 63 QEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTS------ 116
Query: 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQP----YRPLLQLVQDIGH 172
+ YA + +++ E LLE L LL+LV H
Sbjct: 117 --------SLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH 168
Query: 173 EDQLLALAWRVINDSLRTDVCLLYPPYQIAIGEC 206
D +I +L + P I+ C
Sbjct: 169 LDFWHHEVNTLITKALVDPLTGSLPASIISAAGC 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.008
Identities = 27/178 (15%), Positives = 45/178 (25%), Gaps = 59/178 (33%)
Query: 48 FANFI--QILGEQLKLRQQVIATATVYFKRFYARN--------SLKCIDPLLLAPT---- 93
F ++ + ++ QV+ F+ Y L + L T
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 94 -CVFLASKV--EEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEF------ 144
A + F S+S L +L A F
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEG-NAQL---VAI-------------FGGQGNT 166
Query: 145 --YL--LENLDCCLIVYQPYRPLLQ-LVQDIGHEDQLLALAWRVINDSLRTDVCLLYP 197
Y L +L YQ Y L+ L++ + L L D ++
Sbjct: 167 DDYFEELRDL------YQTYHVLVGDLIKFSA--ETLSELI------RTTLDAEKVFT 210
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 33.9 bits (77), Expect = 0.022
Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 7/127 (5%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISS 109
I + +++ L + ++ FK+ Y + SLK +A C+++A + E +
Sbjct: 10 KEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPR--T 67
Query: 110 SRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLL-----ENLDCCLIVYQPYRPLL 164
+ + + K ++ + + NL V +
Sbjct: 68 FKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIA 127
Query: 165 QLVQDIG 171
+ ++
Sbjct: 128 RKAVELD 134
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB);
hyperthermophIle, ribosome binding, complex (ribosome
binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei}
SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Length = 200
Score = 33.8 bits (77), Expect = 0.022
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEE 103
+ + + QLKL + V A ++ + ++ + CV+ A ++ +
Sbjct: 14 SELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK 67
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.083
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 25/68 (36%)
Query: 12 PEWIQQWVLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATV 71
PE I++W +++ ++E D + + Q+ A
Sbjct: 84 PESIRKWREEQRKRLQEL--------DAASK-----------------VMEQEWREKAKK 118
Query: 72 YFKRFYAR 79
+ + R
Sbjct: 119 DLEEWNQR 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.090
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1 MGLISTQGRFYPEWIQQWV-LDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQL 59
+ +I+ R W ++ L + L++L EY+K+F + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPPSA 385
Query: 60 KLRQQVIA 67
+ +++
Sbjct: 386 HIPTILLS 393
Score = 29.8 bits (66), Expect = 0.81
Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 52/218 (23%)
Query: 10 FYPEWIQQW-VLDRQDLIRERKHDLSILSDEEYQKIFIFFANFIQI--LGEQLKLRQQVI 66
F ++ + D QD+ + SILS EE I + L L +Q+ +
Sbjct: 25 FEDAFVDNFDCKDVQDMPK------SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 67 ATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNY 126
++F +L FL S ++ + Y
Sbjct: 79 V------QKFVEE---------VLRINYKFLMSPIKT-----------EQRQPSMMTRMY 112
Query: 127 AYAQEFPYRTNHILE----CEFYLLENLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWR 182
++ Y N + L L+ +P + + +G +AL
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVAL--- 168
Query: 183 VINDSLRTDVCLLYPPYQI---AIGECSFSFTPHVIAE 217
D + ++I + C+ +P + E
Sbjct: 169 ---DVCLSYKVQCKMDFKIFWLNLKNCN---SPETVLE 200
Score = 29.8 bits (66), Expect = 0.86
Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 41/207 (19%)
Query: 5 STQGRFYPEWIQQWVLDRQDLIRERKH--DLSILSDEEYQKIFIFFANFIQILGEQLKLR 62
S+ + IQ + + L++ + + L +L + + K + F +IL L R
Sbjct: 220 SSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTR 273
Query: 63 QQVIATATVYFKR-----------FYARNSLKCIDPLLLAPTCVFLASKVEEF---GVIS 108
+ + LL +L + ++ + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LLLK---YLDCRPQDLPREVLTT 325
Query: 109 SSRLLSTCQTVVKNKLNYA--YAQEFPYRTNHILE-CEFYLLENLDCCLIVYQPYRPLLQ 165
+ R LS +++ L + + I+E L L+ + + L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAEY-RKMFDRLSV 380
Query: 166 LVQDIGHEDQLLALAWRVINDSLRTDV 192
LL+L W D +++DV
Sbjct: 381 FPPSAHIPTILLSLIW---FDVIKSDV 404
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 32.3 bits (74), Expect = 0.095
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 89 LLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLE 148
L+ T +F+ASK EE + Y + I + E +L
Sbjct: 82 LVGVTAMFIASKYEEMYPPEIGDFAFVT--------DNTYTKH------QIRQMEMKILR 127
Query: 149 NLDCCLIVYQPYRPLLQLVQDIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIA 202
L+ L P L + + + + LA ++ ++ + +PP QIA
Sbjct: 128 ALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIA 181
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 31.6 bits (72), Expect = 0.16
Identities = 24/150 (16%), Positives = 38/150 (25%), Gaps = 18/150 (12%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116
E +L + V + R+ + + CV + SK+
Sbjct: 64 ESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRT-----------VK 112
Query: 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQ----DIGH 172
V Y + ++ E +LE L L+ L
Sbjct: 113 PMTVS---KLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL 169
Query: 173 EDQLLALAWRVINDSLRTDVCLLYPPYQIA 202
QL A I +L L P I
Sbjct: 170 WPQLYEAASTTICKALIQPNIALLSPGLIC 199
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 30.5 bits (69), Expect = 0.38
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 26/158 (16%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPL-LLAPTCVFLASKVEEFGVISSSRLLST 115
E KL ++ A +F R+ A L L+ + +F+A+K+EE +
Sbjct: 62 EVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV 121
Query: 116 CQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDIGHED- 174
+ A + + IL E +++ L L L +Q D
Sbjct: 122 T--------DGACSGD------EILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167
Query: 175 ----------QLLALAWRVINDSLRTDVCLLYPPYQIA 202
Q+ +++ + CL +P +A
Sbjct: 168 HEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILA 205
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 30.5 bits (69), Expect = 0.42
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 11/59 (18%)
Query: 19 VLDRQDLIR----ERKHDLSILSDEEYQKI-------FIFFANFIQILGEQLKLRQQVI 66
V R+ + + L +L+DE YQ F F + +G + ++
Sbjct: 251 VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELA 309
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 30.2 bits (69), Expect = 0.49
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
+ D++ L I ++++ ++SDE Y +
Sbjct: 190 LYDKKTLEEILNIAGEYEIPVISDEIYDLM 219
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 30.0 bits (68), Expect = 0.63
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
+ ++L I E KHD+ ++ D Y +
Sbjct: 198 CMTDEELRIIGELATKHDVIVIEDLAYFGM 227
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 29.6 bits (67), Expect = 0.66
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 89 LLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLE 148
L+ + LASK EE + + + Y ++ +L E +L+
Sbjct: 83 LVGTAAMLLASKFEEIYPPEVAEFVYIT--------DDTYTKK------QVLRMEHLVLK 128
Query: 149 NLDCCLIVYQPYRPLLQLVQDIGHED-QLLALAWRVINDSL-RTDVCLLYPPYQIA 202
L L + L Q + ++ +LA + SL D L Y P IA
Sbjct: 129 VLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 184
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 29.8 bits (68), Expect = 0.70
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKIFIF---FANFIQILGEQ 58
V + ++ + E +H L ++ DE Y + +F FA+ + I ++
Sbjct: 190 VYGKDEMRYLVEIAERHGLFLIVDEVYSE-IVFRGEFASALSIESDK 235
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 29.8 bits (68), Expect = 0.71
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
VL ++DL I + +HDL ++SDE Y+
Sbjct: 176 VLTKKDLEEIADFVVEHDLIVISDEVYEHF 205
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 29.8 bits (68), Expect = 0.73
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
V ++L I R HDL ++SDE Y ++
Sbjct: 168 VFGERELEAIARLARAHDLFLISDEVYDEL 197
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase,
signaling protein,transfera cycle complex; HET: MES AGS;
2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Length = 293
Score = 29.5 bits (65), Expect = 0.89
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 46 IFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFG 105
I N+ L + L V+ T+ Y ++ L L +
Sbjct: 75 ISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSL--TAHRFLLTA------ 126
Query: 106 VISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCLIV 156
+++ L N YA+ R + + E L+ ++ +I
Sbjct: 127 TTVATKGLCDS-----FSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIP 172
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 29.5 bits (67), Expect = 0.95
Identities = 4/30 (13%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
V +++ I ++ ++++D+ Y ++
Sbjct: 195 VYSAEEIGQIAALAARYGATVIADQLYSRL 224
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 29.1 bits (65), Expect = 0.99
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 37 SDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVF 96
S Y+ F + + +I+ + + + + ++F FY+ C D LAPT
Sbjct: 82 SWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHD---LAPTWRE 138
Query: 97 LASKVE---EFGVISSSRLLSTCQ 117
A +V+ G ++ C+
Sbjct: 139 FAKEVDGLLRIGAVNCGDDRMLCR 162
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 29.2 bits (66), Expect = 1.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKIFIFFANFIQIL 55
V R++L + KH++ I+SDE Y+ + F +F +I
Sbjct: 217 VFTREELTTLGNICVKHNVVIISDEVYEHL-YFTDSFTRIA 256
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKIF 45
V+DR L + E + ILSDE Y+
Sbjct: 170 VMDRTYLEELVEIASEVGAYILSDEVYRSFS 200
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 28.8 bits (65), Expect = 1.3
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
V+DR +L + +K ++ +SDE Y+ +
Sbjct: 198 VMDRAELEVVANLCKKWNVLCVSDEVYEHM 227
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 29.0 bits (66), Expect = 1.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
+LD + + E + S +SDE Y I
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGI 206
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
VL +L I E +L +++DE Y+ +
Sbjct: 176 VLSATELAAIAEIAVAANLVVITDEVYEHL 205
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.8 bits (65), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
V RQ+L I + KHD +SDE Y+ +
Sbjct: 183 VYTRQELQVIADLCVKHDTLCISDEVYEWL 212
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.4 bits (64), Expect = 1.9
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
V R++L + ++HD+ ++DE YQ +
Sbjct: 190 VFSREELELVASLCQQHDVVCITDEVYQWM 219
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 28.3 bits (64), Expect = 1.9
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
V + D + + H++ ++SDE Y+ I
Sbjct: 179 VWQQADFAALWQAIAGHEIFVISDEVYEHI 208
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 28.0 bits (63), Expect = 2.9
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI 44
R+ + I + L + SDE Y +
Sbjct: 193 NFSRKHVEDIVRLAEELRLPLFSDEIYAGM 222
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 29 RKHDLSILSDEEYQKIF--IFFANFIQILGEQ 58
+HD ++SDE Y+ + + ++ E
Sbjct: 194 VEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEH 225
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 27.9 bits (62), Expect = 3.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 24 DLIRERKHDLSILSDEEYQKIFIFFANFIQILGEQ 58
+++ E + DL IL+D+ Y F + I E
Sbjct: 272 NIVAEHRPDLMILTDDVYGTFADDFQSLFAICPEN 306
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 28.0 bits (63), Expect = 3.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 29 RKHDLSILSDEEYQKI 44
+ + IL+DE Y +
Sbjct: 221 ARQCVPILADEIYGDM 236
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 27.9 bits (63), Expect = 3.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 29 RKHDLSILSDEEYQKI 44
+K + I+SDE Y +
Sbjct: 204 KKRNFYIISDEVYDSL 219
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 27.9 bits (61), Expect = 3.3
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 35 ILSDEEYQKIFIFFANFIQILGE----QLKLRQQVIATATVYFKRFYARNSLKCIDPLLL 90
I+S+EE+ F G Q L ++ T + + L+ P+++
Sbjct: 36 IVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQYRQPVVI 95
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 27.5 bits (62), Expect = 3.5
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 29 RKHDLSILSDEEYQKI 44
++ I+SDE Y +
Sbjct: 180 YENIPYIISDEIYNGL 195
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 19 VLDRQDL--IRE--RKHDLSILSDEEYQKI------FIFFANFIQILGEQLKLRQQVI 66
LD+ L + +H++ ++ DE Y F+ A + + V
Sbjct: 204 TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVH 261
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase;
1.98A {Oryza sativa japonica group}
Length = 246
Score = 27.0 bits (60), Expect = 4.4
Identities = 3/35 (8%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 169 DIGHEDQLLALAWRVINDSLRTDVCLLYPPYQIAI 203
+ +E R + ++P ++
Sbjct: 77 EKEYE----MTLKRTLQSICLLT---VHPNTTTSV 104
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 27.1 bits (60), Expect = 5.3
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 19 VLDRQDLIR----ERKHDLSILSDEEYQKI-------FIFFANFIQILGE 57
VL ++ + L +L+DE YQ+ F F ++ LG
Sbjct: 253 VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGY 302
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 26.7 bits (60), Expect = 6.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 29 RKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVI 66
+ L +LSDE Y+KI A + I + ++ +
Sbjct: 193 VEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSV 230
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus
luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A*
1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A*
2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Length = 153
Score = 26.1 bits (57), Expect = 8.5
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 40 EYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLAS 99
+ +F F ++ +L+ A A L+ ++ T L S
Sbjct: 39 AAKDLFSFLKGTSEVPQNNPELQAH--AGKVFKLVYEAAIQ-LEVTGVVVTDATLKNLGS 95
Query: 100 KVEEFGV 106
GV
Sbjct: 96 VHVSKGV 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.437
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,472,392
Number of extensions: 193401
Number of successful extensions: 553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 54
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)