RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1168
(229 letters)
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 89.3 bits (221), Expect = 3e-23
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 16 QQWVLDRQDLIR--ERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYF 73
W D++DL + L ++ Y++ FI +G +L L +AT +YF
Sbjct: 9 PCWYWDKKDLAHTPSQLEGLDPATEARYRREGA---RFIFDVGTRLGLHYDTLATGIIYF 65
Query: 74 KRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFP 133
RFY +S K + C+FLA KVEE + +T + + Q
Sbjct: 66 HRFYMFHSFKQFPRYVTGACCLFLAGKVEETPK----KCKDIIKTARSLLNDVQFGQFGD 121
Query: 134 YRTNHILECEFYLLENLDCCLIV 156
++ E LL+ + L V
Sbjct: 122 DPKEEVMVLERILLQTIKFDLQV 144
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 88.9 bits (220), Expect = 4e-23
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 32 DLSILSDEEYQKIFIFFANFIQILGEQLK--LRQQVIATATVYFKRFYARNSLKCIDPLL 89
D L E + ++ + K + + V+ TA +YFKRFY NS+ P +
Sbjct: 34 DPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRI 93
Query: 90 LAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLEN 149
+ TC FLA KV+EF V S + ILE E L++
Sbjct: 94 IMLTCAFLACKVDEFNVSSPQFV----------GNLRESPLGQEKALEQILEYELLLIQQ 143
Query: 150 LDCCLIVY 157
L+ LIV+
Sbjct: 144 LNFHLIVH 151
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 87.4 bits (216), Expect = 2e-22
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 16 QQWVLDRQDLIR--ERKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYF 73
+W R+ L R+ + + ++ N IQ +G++L + Q I TA VY
Sbjct: 3 SRWFFTREQLENTPSRRCGVEADKELSCRQQAA---NLIQEMGQRLNVSQLTINTAIVYM 59
Query: 74 KRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLN-YAYAQEF 132
RFY +S + +++ T +FLA+KVEE + + + +
Sbjct: 60 HRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAY 119
Query: 133 PYRTNHILECEFYLLENLDCCLIV 156
+T ++ E +L+ L + +
Sbjct: 120 LQQTRELVILETIMLQTLGFEITI 143
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 62.2 bits (151), Expect = 3e-13
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 159 PYRPLLQLVQDI-------GHEDQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
PYRP + D+ + + L A +N TD LLY P QIA+
Sbjct: 2 PYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALT 54
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 110
Score = 57.6 bits (139), Expect = 1e-11
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 158 QPYRPLLQLVQDIGHE----DQLLALAWRVINDSLRTDVCLLYPPYQIAIG 204
PY+ LL+ + + + +L+ +AW +NDSL T + L + P IA+
Sbjct: 2 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVA 52
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 56.8 bits (137), Expect = 2e-11
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 158 QPYRPLLQLVQDIGHEDQLLALAWRVINDSLR-TDVCLLYPPYQIAIG 204
P+ +++ Q + L ++ + +SL T CL Y P IA
Sbjct: 2 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACV 49
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 41.5 bits (97), Expect = 1e-05
Identities = 19/144 (13%), Positives = 38/144 (26%), Gaps = 29/144 (20%)
Query: 23 QDLIRERKHDLSILSDEEYQKIFIFFAN---------------FIQILGEQLKLRQQVIA 67
L+ E I E + N ++ + + L+ V
Sbjct: 7 SSLLNEEDCRQMIYRSEREHDARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFP 66
Query: 68 TATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTCQTVVKNKLNYA 127
A + + + A + +A KV + I +++L C
Sbjct: 67 LAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGA-------- 118
Query: 128 YAQEFPYRTNHILECEFYLLENLD 151
+ +L E L+ L
Sbjct: 119 ------TTADKLLTLEVKSLDTLS 136
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 37.6 bits (87), Expect = 2e-04
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 14/102 (13%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISS 109
++ + ++ L V+A A R + C+ +ASK+ IS+
Sbjct: 41 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPIST 100
Query: 110 SRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLD 151
S L + +++ E LLE L
Sbjct: 101 SSLCYAAA--------------DSFSRQELIDQEKELLEKLA 128
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 37.2 bits (86), Expect = 4e-04
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 57 EQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISSSRLLSTC 116
E +L + V + R+ + + CV + SK+ ++ S+L
Sbjct: 43 ESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS 102
Query: 117 QTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLD 151
+ ++ E +LE L
Sbjct: 103 CDC--------------FTNLELINQEKDILEALK 123
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 36.9 bits (85), Expect = 5e-04
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARN-SLKCIDPLLLAPTCVFLASKVEEFGVIS 108
+++ + E KL ++ A +F R+ A ++ L+ + +F+A+K+EE
Sbjct: 48 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPK 107
Query: 109 SSRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCL 154
+ + IL E +++ L L
Sbjct: 108 LHQFAYVTDGA--------------CSGDEILTMELMIMKALKWRL 139
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB),
core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Length = 98
Score = 34.8 bits (80), Expect = 0.001
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF 104
+ + + QLKL + V A ++ + ++ + CV+ A ++ +
Sbjct: 7 SELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV 61
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 34.2 bits (78), Expect = 0.004
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGVISS 109
+++ +GE+ KL+ + + A Y RF + S+ L+ + LASK EE
Sbjct: 36 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEV 95
Query: 110 SRLLSTCQTVVKNKLNYAYAQEFPYRTNHILECEFYLLENLDCCL 154
+ + Y +L E +L+ L L
Sbjct: 96 AEFVYITD--------------DTYTKKQVLRMEHLVLKVLTFDL 126
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB),
core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Length = 95
Score = 32.1 bits (73), Expect = 0.010
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 49 ANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEFGV 106
+++ ++L L ++V A Y R P L +++AS +E
Sbjct: 4 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR 61
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 32.5 bits (74), Expect = 0.012
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 49 ANFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEEF 104
+F+ L L +QV AT ++ + + P+ +A +++AS+
Sbjct: 5 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE 60
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 31.8 bits (72), Expect = 0.013
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 50 NFIQILGEQLKLRQQVIATATVYFKRFYARNSLKCIDPLLLAPTCVFLASKVEE 103
I + +++ L + + F++ Y + SLK +A C+++A + E
Sbjct: 7 KEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEG 60
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a
{Aquifex aeolicus [TaxId: 63363]}
Length = 187
Score = 27.3 bits (60), Expect = 1.5
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 2 GLISTQGRFYPEWIQQWVLDRQDLIRERKHDLSILSDEEYQK 43
L ++ P + + L R++L+ +R + ++ E+Y++
Sbjct: 142 ALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQYEE 183
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 25.7 bits (55), Expect = 5.6
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 29 RKHDLSILSDEEYQKIFIFFANFIQILGEQLKLRQQVIATATVYFKRFYARNS 81
++ +SD++ + F E R+ F+ + S
Sbjct: 273 KEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYRE--------IFEELFPLPS 317
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 120
Score = 24.4 bits (53), Expect = 7.3
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 154 LIVYQPYRPLLQLVQDIGHEDQLLALAWRVIND 186
+ ++ + + Q +A W
Sbjct: 17 FETFGSHKAVTRAGQAARATSVEVAELWSTFMQ 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.437
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 857,736
Number of extensions: 38622
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 20
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)