BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11680
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
           Synthetase
 pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
           Synthetase
          Length = 463

 Score =  135 bits (340), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 49  ESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKWV 108
           E+TA  F + VDSACVF NAS+RF+DGYRFGLGAEVGIST+RIHARGPVG+EGLLTTKW+
Sbjct: 372 ENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWL 431

Query: 109 LNGDGHVASEFAEGGPCTFVHEHLPI 134
           L G  HV S+F+E G   ++HE+LPI
Sbjct: 432 LRGKDHVVSDFSEHGSLKYLHENLPI 457


>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
 pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
          Length = 468

 Score =  103 bits (256), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 48  SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
           +++ A  F + VDS+ V+ NAS+RFADG+R+G GAEVGIST++IHARGPVG++GL++ ++
Sbjct: 376 NKANAEKFXKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSYQY 435

Query: 108 VLNGDGHVASEF-AEGGPCTFVHEHLPI 134
            + GDG VAS++   GG   FVH+ L I
Sbjct: 436 QIRGDGQVASDYLGAGGNKAFVHKDLDI 463


>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
           Reductase From Burkholderia Thailandensis
 pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
           Reductase From Burkholderia Thailandensis
 pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
           Reductase From Burkholderia Thailandensis
 pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
           Reductase From Burkholderia Thailandensis
          Length = 444

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 49/62 (79%)

Query: 52  AADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKWVLNG 111
           A  F R+VDSA V  NAS+RFADG+ FGLGAE+GIS  ++HARGPVG+EGL + K+V+ G
Sbjct: 379 AMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLG 438

Query: 112 DG 113
            G
Sbjct: 439 HG 440


>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
           (tm0293) From Thermotoga Maritima At 2.00 A Resolution
          Length = 427

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 5/78 (6%)

Query: 38  TLMTRKYFLFSESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPV 97
           +++T  Y     S A  F  ++D+A V+ NAS+RF DG +FG GAE+GIST R HARGPV
Sbjct: 353 SILTENY-----SNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPV 407

Query: 98  GVEGLLTTKWVLNGDGHV 115
           G+  L T K+V+ G+ HV
Sbjct: 408 GLRELTTYKFVVLGEYHV 425


>pdb|3UK8|A Chain A, The Crystal Structure Of The Cd-Bound Domain 3 Of The
           Cadmium Carbonic Anhydrase From Marine Diatom
           Thalassiosira Weissflogii
 pdb|3UK8|B Chain B, The Crystal Structure Of The Cd-Bound Domain 3 Of The
           Cadmium Carbonic Anhydrase From Marine Diatom
           Thalassiosira Weissflogii
          Length = 231

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 30/75 (40%)

Query: 43  KYFLFSESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGL 102
           K  +   ST +   ++VD   +      R +D  +FG     G   A  H RG   +EGL
Sbjct: 38  KASIVKASTMSSELKRVDPQGILKCVDGRGSDNTQFGGPKMPGGIYAIAHNRGVTTLEGL 97

Query: 103 LTTKWVLNGDGHVAS 117
                 +   GHV S
Sbjct: 98  KDITREVASKGHVPS 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,173,255
Number of Sequences: 62578
Number of extensions: 153644
Number of successful extensions: 312
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)