RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11680
(135 letters)
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 140 bits (355), Expect = 5e-41
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 48 SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
+ TA F R+VDSA V+ NAS+RF DG FGLGAE+GIST ++HARGP+G+E L T K+
Sbjct: 342 NYETAERFLREVDSAAVYVNASTRFTDGGEFGLGAEIGISTQKLHARGPMGLEELTTYKY 401
Query: 108 VLNGD 112
++ GD
Sbjct: 402 IVRGD 406
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 140 bits (355), Expect = 6e-41
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 48 SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
+ A F +VDSA V+ NAS+RF DG FGLGAE+GIST ++HARGP+G+E L T K+
Sbjct: 348 DYAAAERFLNEVDSAAVYVNASTRFTDGGEFGLGAEIGISTQKLHARGPMGLEELTTYKY 407
Query: 108 VLNGDGHV 115
++ GDG +
Sbjct: 408 IVLGDGQI 415
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 142 bits (361), Expect = 1e-40
Identities = 54/85 (63%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 51 TAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKWVLN 110
A F R+VDSA VFHNAS+RF+DG RFGLGAEVGIST RIHARGPVGVEGLLTT+W+L
Sbjct: 636 VAEIFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTGRIHARGPVGVEGLLTTRWILR 695
Query: 111 GDGHVASEFAEGGP-CTFVHEHLPI 134
G+G V +G + H+ LP+
Sbjct: 696 GNGQV----VDGDKGVVYTHKDLPL 716
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 140 bits (355), Expect = 7e-40
Identities = 56/86 (65%), Positives = 67/86 (77%), Gaps = 3/86 (3%)
Query: 49 ESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKWV 108
E+ A F + VDSA VFHNAS+RF+DG+RFGLGAEVGIST+RIHARGPVGVEGLLTT+W+
Sbjct: 628 ENVAEFFLQHVDSAAVFHNASTRFSDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWL 687
Query: 109 LNGDGHVASEFAEGGPCTFVHEHLPI 134
L G G V S + G + H+ LPI
Sbjct: 688 LRGKGQVVS--GDHG-LVYTHKDLPI 710
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 131 bits (333), Expect = 9e-38
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 48 SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
+ A F +VDSA V+ NAS+RF DG +FGLGAE+GIST ++HARGP+G+E L + K+
Sbjct: 348 DYANAERFVNEVDSAAVYVNASTRFTDGGQFGLGAEIGISTQKLHARGPMGLEALTSYKY 407
Query: 108 VLNGDGHVAS 117
++ GDG V
Sbjct: 408 IVRGDGQVRP 417
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 102 bits (257), Expect = 5e-27
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 48 SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTK 106
+++ A FQ VDSA V+HNAS+RF DG+RFG GAEVGIST ++HARGP+G+E L + K
Sbjct: 340 NKANAEQFQNGVDSAAVYHNASTRFTDGFRFGFGAEVGISTQKLHARGPMGLEALTSYK 398
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 72.6 bits (178), Expect = 5e-16
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 33 CPFMNTLMTRKYFLFSESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIH 92
P + T K + DF + +D+A + N SS+ G G G E +++ +
Sbjct: 324 GPHTRCVYTHK-----INKVDDFVQYIDTASFYPNESSKKGRGAFAGKGVERIVTSGMNN 378
Query: 93 ARG-PVGVEGLLTTKWVL 109
G VG + L K ++
Sbjct: 379 IFGAGVGHDALRPLKRLV 396
>gnl|CDD|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.
Length = 552
Score = 28.5 bits (65), Expect = 1.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 113 GHVASEFAEGGPCTFVHE 130
GHV+ E A GGP V +
Sbjct: 475 GHVSPEAAVGGPIALVED 492
>gnl|CDD|215264 PLN02475, PLN02475,
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase.
Length = 766
Score = 27.4 bits (61), Expect = 2.4
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 77 RFG-LGAEVGISTARIHARGPVGVEGLLTTKW 107
R+G G E+G ARG V + TKW
Sbjct: 81 RYGWTGGEIGFDVYFSMARGNASVPAMEMTKW 112
>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase. This protein,
dihydroxy-acid dehydratase, catalyzes the fourth step in
valine and isoleucine biosynthesis. It contains a
catalytically essential [4Fe-4S] cluster This model
generates scores of up to 150 bits vs.
6-phosphogluconate dehydratase, a homologous enzyme
[Amino acid biosynthesis, Pyruvate family].
Length = 535
Score = 27.0 bits (60), Expect = 3.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 113 GHVASEFAEGGPCTFVHE 130
GHV+ E AEGGP V +
Sbjct: 460 GHVSPEAAEGGPIALVED 477
>gnl|CDD|117778 pfam09227, DUF1962, Domain of unknown function (DUF1962).
Members of this family of fungal domains are
functionally uncharacterized.
Length = 64
Score = 24.9 bits (54), Expect = 6.6
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 56 QRKVDSACVFHNASSRFADGYRFG 79
QR+ +S C N F R G
Sbjct: 11 QRRTNSPCQLENGDRHFCGCDRTG 34
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 26.0 bits (58), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 65 FHNASSRFADGYRFGL-GA 82
F N S +F G R+GL GA
Sbjct: 17 FENISVKFGGGNRYGLIGA 35
>gnl|CDD|237777 PRK14652, PRK14652, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 302
Score = 26.0 bits (57), Expect = 7.7
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 73 ADGYRFGLGAEVGIST--ARIHARGPVGVEGL 102
DG R LGA IS AR HA G VG+E L
Sbjct: 94 TDGGRLVLGAGAPISRLPARAHAHGLVGMEFL 125
>gnl|CDD|221267 pfam11852, DUF3372, Domain of unknown function (DUF3372). This
domain is functionally uncharacterized. This domain is
found in bacteria and eukaryotes. This presumed domain
is about 170 amino acids in length.
Length = 168
Score = 25.6 bits (57), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 46 LFSESTAADFQRKVDSACVFHN 67
LF TAAD Q++VD FHN
Sbjct: 59 LFRLGTAADIQQRVD----FHN 76
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 25.9 bits (57), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 79 GLGAEVGISTARIHARGPVGVEGLLT 104
G+ + +GI T R R VGV G +T
Sbjct: 124 GVASPMGIPTRRTLRREAVGVVGAIT 149
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised
of two globular subdomains connected by a single helix
and bind their specific ligands in the cleft between
these domains. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind the metal ion in the cleft between these
domains. In addition, these proteins sometimes have a
low complexity region containing a metal-binding
histidine-rich motif (repetitive HDH sequence).
Length = 286
Score = 25.8 bits (57), Expect = 8.8
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 64 VFHNASSRFADGY------RFGLGAEVGISTARIHA 93
VFH+A F Y F + E+ R+
Sbjct: 184 VFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAK 219
>gnl|CDD|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate
dehydratase [Amino acid transport and metabolism /
Carbohydrate transport and metabolism].
Length = 575
Score = 25.6 bits (57), Expect = 10.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 113 GHVASEFAEGGPCTFVHE 130
GHV+ E AEGGP V +
Sbjct: 492 GHVSPEAAEGGPIALVRD 509
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.449
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,627,872
Number of extensions: 555400
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 24
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)