RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11680
         (135 letters)



>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
           structural genomics, structural genomics CONS SGC,
           oxidoreductase; 2.25A {Homo sapiens}
          Length = 463

 Score =  168 bits (429), Expect = 1e-51
 Identities = 61/88 (69%), Positives = 73/88 (82%)

Query: 48  SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
            E+TA  F + VDSACVF NAS+RF+DGYRFGLGAEVGIST+RIHARGPVG+EGLLTTKW
Sbjct: 371 DENTAEFFLQHVDSACVFWNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKW 430

Query: 108 VLNGDGHVASEFAEGGPCTFVHEHLPIN 135
           +L G  HV S+F+E G   ++HE+LPI 
Sbjct: 431 LLRGKDHVVSDFSEHGSLKYLHENLPIP 458


>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
           protein structure initiative, PSI, joint center for S
           genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
           c.82.1.1
          Length = 468

 Score =  157 bits (398), Expect = 4e-47
 Identities = 46/89 (51%), Positives = 67/89 (75%), Gaps = 1/89 (1%)

Query: 48  SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
           +++ A  F + VDS+ V+ NAS+RFADG+R+G GAEVGIST++IHARGPVG++GL++ ++
Sbjct: 376 NKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSYQY 435

Query: 108 VLNGDGHVASEFAEG-GPCTFVHEHLPIN 135
            + GDG VAS++    G   FVH+ L I 
Sbjct: 436 QIRGDGQVASDYLGAGGNKAFVHKDLDIK 464


>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
           PSI, protein structure initiative, joint center for S
           genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
          Length = 427

 Score =  131 bits (333), Expect = 7e-38
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 48  SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
           + S A  F  ++D+A V+ NAS+RF DG +FG GAE+GIST R HARGPVG+  L T K+
Sbjct: 358 NYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKF 417

Query: 108 VLNGDGHV 115
           V+ G+ HV
Sbjct: 418 VVLGEYHV 425


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.59
 Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 44/118 (37%)

Query: 22  VVLDSQYRPSNCPFMNTLMT-----------RKYFLFSES----------TAADFQ---- 56
           +   +++ P   PF + L+            +    F+              +D +    
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473

Query: 57  ----RKVDSACVF--------HNASSRFADGYRFGLGAEVGIS--TARI-HARGPVGV 99
               R VD                ++   D   FG G   G+   T R     G V V
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILD---FGPGGASGLGVLTHRNKDGTG-VRV 527


>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
           alpha-helical, C-terminal domain M beta-sheet
           (trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
           c.8.2.2 d.334.1.1
          Length = 628

 Score = 26.0 bits (58), Expect = 4.3
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 113 GHVASEFAEGGPCTFVHE 130
            H+  E  +GG    V +
Sbjct: 543 IHLTPEAIDGGLIAKVQD 560


>1uoy_A Bubble protein; exudate protein, sulfur phasing, potential killer
          toxin; 1.5A {Penicillium brevicompactum} SCOP: g.3.19.1
          Length = 64

 Score = 23.9 bits (51), Expect = 9.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 56 QRKVDSACVFHNASSRFADGYRFGL 80
          QR+ +S C   N    F    R G+
Sbjct: 11 QRRTNSGCKAGNGDRHFCGCDRTGV 35


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,039,994
Number of extensions: 106253
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 8
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)