RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11680
         (135 letters)



>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score =  126 bits (318), Expect = 2e-36
 Identities = 40/72 (55%), Positives = 60/72 (83%)

Query: 48  SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
           +++ A  F + VDS+ V+ NAS+RFADG+R+G GAEVGIST++IHARGPVG++GL++ ++
Sbjct: 365 NKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSYQY 424

Query: 108 VLNGDGHVASEF 119
            + GDG VAS++
Sbjct: 425 QIRGDGQVASDY 436


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 48  SESTAADFQRKVDSACVFHNASSRFADGYRFGLGAEVGISTARIHARGPVGVEGLLTTKW 107
           + S A  F  ++D+A V+ NAS+RF DG +FG GAE+GIST R HARGPVG+  L T K+
Sbjct: 345 NYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKF 404

Query: 108 VLNGDGHV 115
           V+ G+ HV
Sbjct: 405 VVLGEYHV 412


>d1iarb1 b.1.2.1 (B:1-96) Interleukin-4 receptor alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 26.0 bits (57), Expect = 0.88
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 29 RPSNCPFMNTLMTRKYFLFSESTAADFQRKVDSACVFHNASSRF--ADGYRFGLGAE 83
           P+NC     L+ +  FL SE+     +    + CV H        AD Y   L A 
Sbjct: 25 GPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAG 81


>d1uoya_ g.3.19.1 (A:) Bubble protein {Penicillium brevicompactum
          [TaxId: 5074]}
          Length = 64

 Score = 25.0 bits (54), Expect = 1.3
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 56 QRKVDSACVFHNASSRFADGYRFGL 80
          QR+ +S C   N    F    R G+
Sbjct: 11 QRRTNSGCKAGNGDRHFCGCDRTGV 35


>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 23.1 bits (50), Expect = 8.4
 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 27 QYRPSNCPFMNTLMTRKYFLF-SESTAADFQRKVDSACVFHNA 68
          ++  ++      +  R Y  F ++     F+ + D   VF + 
Sbjct: 32 EFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD-GYVFLDN 73


>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
           N-terminal domain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 239

 Score = 23.5 bits (50), Expect = 9.6
 Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 4/57 (7%)

Query: 2   PKFYSIKLYCCITLWSFTFMVVLDSQYRPSNCPFMNTLMTRKYFL-FSESTAADFQR 57
           P+       C   +         +    PS C        R + L   ES   D Q 
Sbjct: 120 PRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECG---GRSFRLLQDESEFLDTQT 173


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 498,062
Number of extensions: 19133
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)