RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11681
(181 letters)
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 304 bits (782), Expect = e-104
Identities = 98/181 (54%), Positives = 132/181 (72%), Gaps = 1/181 (0%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P Y+D S +I++A RR WGK INAGQTCIAPDY+LC+ +VQ + + K L +Y E
Sbjct: 212 PCYVDKSCDIDVAARRIAWGKFINAGQTCIAPDYVLCTPEVQEKFVEALKKTLKEFYGED 271
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEE 120
+ S Y RI++D+HFQRLK L+ S G +A+GG D +R+I+PT+L DVKP+DP+M EE
Sbjct: 272 PKESPDYGRIINDRHFQRLKKLL-SGGKVAIGGQTDEKERYIAPTVLTDVKPSDPVMQEE 330
Query: 121 IFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
IFGPILPI+ V + EAI+FIN+R KPL LY+FS+N +V + T SG +C+NDT+MH
Sbjct: 331 IFGPILPIVTVNNLDEAIEFINSREKPLALYVFSNNKKVINKILSNTSSGGVCVNDTIMH 390
Query: 181 Y 181
Y
Sbjct: 391 Y 391
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 266 bits (683), Expect = 4e-89
Identities = 86/181 (47%), Positives = 123/181 (67%), Gaps = 1/181 (0%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P +D N+E+A RR WGK +NAGQTCIAPDY+L ++ +++ + K + +Y E
Sbjct: 212 PCIVDKDANLEVAARRIAWGKFLNAGQTCIAPDYVLVHESIKDELIEELKKAIKEFYGED 271
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEE 120
+ S Y RI++++HF RL SL+ G + +GG +D +R+I+PTIL DV P P+M EE
Sbjct: 272 PKESPDYGRIINERHFDRLASLL-DDGKVVIGGQVDKEERYIAPTILDDVSPDSPLMQEE 330
Query: 121 IFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
IFGPILPI+ + EAI+FIN+RPKPL LYLFS + VQE + +T SG +C+ND ++H
Sbjct: 331 IFGPILPILTYDDLDEAIEFINSRPKPLALYLFSEDKAVQERVLAETSSGGVCVNDVLLH 390
Query: 181 Y 181
Sbjct: 391 A 391
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 240 bits (614), Expect = 2e-78
Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 1/180 (0%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P +D N++LA +R +WGK +NAGQTC+APDY+L V+ + + + K + +Y E
Sbjct: 212 PCIVDEDANLKLAAKRIVWGKFLNAGQTCVAPDYVLVHESVKEKFIKELKEEIKKFYGED 271
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEE 120
S Y RI+++KHF RL L+ + G I GG+ D +I PTIL +V DP+M EE
Sbjct: 272 PLESPDYGRIINEKHFDRLAGLLDN-GKIVFGGNTDRETLYIEPTILDNVTWDDPVMQEE 330
Query: 121 IFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
IFGPILP++ ++ EAI+ I +RPKPL LYLFS + +V++ + G CINDT+MH
Sbjct: 331 IFGPILPVLTYDTLDEAIEIIKSRPKPLALYLFSEDKKVEKKVLENLSFGGGCINDTIMH 390
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 237 bits (607), Expect = 5e-77
Identities = 76/182 (41%), Positives = 119/182 (65%), Gaps = 1/182 (0%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P+ +D S N+++A RR WGK +NAGQTC+APDY+L R ++ + + K + ++ E
Sbjct: 221 PVIVDKSCNLKVAARRIAWGKFLNAGQTCVAPDYVLVHRSIKDKFIEALKEAIKEFFGED 280
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSS-GTIALGGDMDASDRFISPTILVDVKPTDPIMGE 119
+ S+ Y RIV++ H +RL L+ G + GG++D +++++PTI+V+ P+M E
Sbjct: 281 PKKSEDYSRIVNEFHTKRLAELIKDHGGKVVYGGEVDIENKYVAPTIIVNPDLDSPLMQE 340
Query: 120 EIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVM 179
EIFGPILPI+ E+ E ++FIN+RPKPL LY F + + +EL + T SG++ IND V
Sbjct: 341 EIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDKRHKELVLENTSSGAVVINDCVF 400
Query: 180 HY 181
H
Sbjct: 401 HL 402
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 224 bits (572), Expect = 2e-72
Identities = 76/187 (40%), Positives = 113/187 (60%), Gaps = 6/187 (3%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWY--T 58
P +D + +++ A ++ WGK +NAGQTCIAPDY+ V+ + KA ++ +Y
Sbjct: 212 PTIVDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESVKDAFVEHLKAEIEKFYGKD 271
Query: 59 EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDVKPTD 114
+ S RIV+D+HF RLK L+ + + GG DA+ R+I+PT+L +V P
Sbjct: 272 AARKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFDAAQRYIAPTVLTNVTPDM 331
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
IM EEIFGP+LPII E E I++INA+PKPL LY+FS + + +T SG + +
Sbjct: 332 KIMQEEIFGPVLPIITYEDLDEVIEYINAKPKPLALYVFSKDKANVNKVLARTSSGGVVV 391
Query: 175 NDTVMHY 181
ND V+H+
Sbjct: 392 NDVVLHF 398
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 217 bits (554), Expect = 1e-69
Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 1/182 (0%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P+ + + ++ELA +R LWGK NAGQ C+APDY+L V + + + K VLD +Y
Sbjct: 220 PVIVTKNADLELAAKRILWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEFYPGG 279
Query: 61 VQGSKHYCRIVSDKHFQRLKSLV-HSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGE 119
S Y RIV+ +HF RLKSL+ + G + +GG+MD + RFI PTI+ DV D +M E
Sbjct: 280 ANASPDYTRIVNPRHFNRLKSLLDTTKGKVVIGGEMDEATRFIPPTIVSDVSWDDSLMSE 339
Query: 120 EIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVM 179
E+FGP+LPII V+ EAI+ IN+R PL LY+F+ + + + +T SG + INDT++
Sbjct: 340 ELFGPVLPIIKVDDLDEAIKVINSRDTPLALYIFTDDKSEIDHILTRTRSGGVVINDTLI 399
Query: 180 HY 181
H
Sbjct: 400 HV 401
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 199 bits (508), Expect = 1e-62
Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 8/187 (4%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P I ++ A R +GK +NAGQTC+APDY+L + + AKA + Y
Sbjct: 213 PAIIAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVPEDKLEEFVAAAKAAVAKMYP-T 271
Query: 61 VQGSKHYCRIVSDKHFQRLKSLV---HSSG----TIALGGDMDASDRFISPTILVDVKPT 113
+ + Y I++++H+ RL+ L+ + G + G+ A+ R + PT++++V
Sbjct: 272 LADNPDYTSIINERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDD 331
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMC 173
+M EEIFGPILPI+ +S EAI +INARP+PL LY F + Q+ + +THSG +
Sbjct: 332 MRVMQEEIFGPILPILTYDSLDEAIDYINARPRPLALYYFGEDKAEQDRVLRRTHSGGVT 391
Query: 174 INDTVMH 180
INDT++H
Sbjct: 392 INDTLLH 398
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 185 bits (471), Expect = 3e-57
Identities = 78/186 (41%), Positives = 113/186 (60%), Gaps = 6/186 (3%)
Query: 1 PLYIDSSVNIELAVRRFLWGK--CINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT 58
P+ +DS+V++++AVRR GK C N GQ CIAPDY+L +++ K L+ ++
Sbjct: 213 PVIVDSTVDLKVAVRRIAGGKWGC-NNGQACIAPDYVLVEESFAPTLIDALKNTLEKFFG 271
Query: 59 EQVQGSKHYCRIVSDKHFQRLKSLVHSSGT---IALGGDMDASDRFISPTILVDVKPTDP 115
E + SK RIV+ HFQRL L+ I GG+ D + +I PTIL+D
Sbjct: 272 ENPKESKDLSRIVNSHHFQRLSRLLDDPSVADKIVHGGERDEKNLYIEPTILLDPPLDSS 331
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
IM EEIFGP+LPII V+ E+I+ IN+RPKPL Y+F+ N +++ + +T SG + N
Sbjct: 332 IMTEEIFGPLLPIITVKKIEESIEIINSRPKPLAAYVFTKNKELKRRIVAETSSGGVTFN 391
Query: 176 DTVMHY 181
DTV+ Y
Sbjct: 392 DTVVQY 397
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 161 bits (410), Expect = 6e-48
Identities = 75/187 (40%), Positives = 113/187 (60%), Gaps = 14/187 (7%)
Query: 4 IDSSVNIELAVRRFL---WGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
+ SS + ++AV R + WG C AGQ CIA DY+L + ++ K+ + ++ E
Sbjct: 226 LSSSRDTKVAVNRIVGGKWGSC--AGQACIAIDYVLVEERFAPILIELLKSTIKKFFGEN 283
Query: 61 VQGSKHYCRIVSDKHFQRLKSL-----VHSSGTIALGGDMDASDRFISPTILVDVKPTDP 115
+ SK RI++ KHFQRL +L V +S I GG +D FI PTIL++ P D
Sbjct: 284 PRESKSMARILNKKHFQRLSNLLKDPRVAAS--IVHGGSIDEKKLFIEPTILLN-PPLDS 340
Query: 116 -IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
IM EEIFGP+LPII V+ ++I FIN++PKPL +Y F++N +++ + +T SGS+
Sbjct: 341 DIMTEEIFGPLLPIITVKKIEDSIAFINSKPKPLAIYAFTNNEKLKRRILSETSSGSVTF 400
Query: 175 NDTVMHY 181
ND ++ Y
Sbjct: 401 NDAIIQY 407
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 143 bits (362), Expect = 3e-41
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWY--- 57
PL + +++ AV+ ++G NAGQ C A +L + + + + + +
Sbjct: 211 PLIVFDDADLDAAVKGAVFGAFGNAGQVCTAASRLLVHESIYDEFVERLVERVKALKVGN 270
Query: 58 --TEQVQGSKHYCRIVSDKHFQRLKSLV----HSSGTIALGGDMDASD--RFISPTILVD 109
++S R+ + + + GG F+ PT+L D
Sbjct: 271 PLDPDTD----MGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFVPPTVLTD 326
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
V P PI EEIFGP+LP+I + EAI+ N L +F+ + + + +
Sbjct: 327 VDPDMPIAQEEIFGPVLPVIPFKDEEEAIELANDTEYGLAAGVFTRDLERALRVAERLEA 386
Query: 170 GSMCINDTVMH 180
G++ IND +
Sbjct: 387 GTVWINDYSVG 397
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 139 bits (351), Expect = 2e-39
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 6/185 (3%)
Query: 1 PLYIDSSVNIELAVRRFLWGK--CINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT 58
P+ +DS ++++ VRR + GK C N GQ CI+PDYIL +++ ++++ K L+++Y
Sbjct: 224 PVVVDSDTDLKVTVRRIIAGKWGC-NNGQACISPDYILTTKEYAPKVIDAMKKELETFYG 282
Query: 59 EQVQGSKHYCRIVSDKHFQRLKSLVHS---SGTIALGGDMDASDRFISPTILVDVKPTDP 115
+ SK RIV+ HF RL L+ S I GG+ D + I+PTIL+DV
Sbjct: 283 KNPMESKDMSRIVNSTHFDRLSKLLDEKEVSDKIVYGGEKDRENLKIAPTILLDVPLDSL 342
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
IM EEIFGP+LPI+ + + E+ I +RPKPL YLF+ N +++E F +G + +N
Sbjct: 343 IMSEEIFGPLLPILTLNNLEESFDVIRSRPKPLAAYLFTHNKKLKERFAATVSAGGIVVN 402
Query: 176 DTVMH 180
D +H
Sbjct: 403 DIAVH 407
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 129 bits (327), Expect = 7e-36
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 12/189 (6%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P + +++ AV ++G NAGQ C A ++ V + + + A S
Sbjct: 248 PAIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDEFVERLVARAASL---- 303
Query: 61 VQG-----SKHYCRIVSDKHFQRLKSLV---HSSGTIALGGDMDASDRFISPTILVDVKP 112
G S ++S++ R++ + + G L G F+ PTIL V P
Sbjct: 304 KVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGKRPGGYFVEPTILEGVTP 363
Query: 113 TDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSM 172
I EEIFGP+LP+I + EAI+ N L +F+ + + +G +
Sbjct: 364 DMRIAREEIFGPVLPVIRFKDEEEAIELANDTEYGLAAAIFTRDLARAFRVARRLEAGMV 423
Query: 173 CINDTVMHY 181
IND
Sbjct: 424 GINDYTGGA 432
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 111 bits (281), Expect = 2e-29
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW---- 56
PL + +++ AV ++G NAGQ C A +L + + + + S
Sbjct: 241 PLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERLVEAAKSLKVGD 300
Query: 57 -YTEQVQ-GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD-MDASDRFISPTILVD 109
G ++S K +R+ S + + + GG+ F+ PT+L D
Sbjct: 301 PLDPDTDIGP-----LISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGYFVEPTVLAD 355
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
V P I EEIFGP+L +I + EAI+ N L +F+++ + + +
Sbjct: 356 VTPDMRIAQEEIFGPVLSVIPFKDEDEAIELANDTEYGLAAGVFTNDLERALRVARRLEA 415
Query: 170 GSMCIND 176
G + IND
Sbjct: 416 GMVWIND 422
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 101 bits (253), Expect = 8e-26
Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 54/181 (29%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P+ +D +++ AV ++G NAGQ C A +L V I ++
Sbjct: 207 PVIVDEDADLDAAVEGAVFGAFFNAGQICTAASRLL----VHESIYDEFVE--------- 253
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEE 120
+L T+LVDV P PI EE
Sbjct: 254 -----------------KLV------------------------TVLVDVDPDMPIAQEE 272
Query: 121 IFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
IFGP+LP+I + EAI N LT +F+ + + +G++ IND+ +
Sbjct: 273 IFGPVLPVIRFKDEEEAIALANDTEYGLTAGVFTRDLNRALRVAERLRAGTVYINDSSIG 332
Query: 181 Y 181
Sbjct: 333 V 333
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 85.7 bits (213), Expect = 6e-20
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P+ + + ++E A +WG +NAGQTCI+ + + V + + + +
Sbjct: 232 PMIVLADADLERAAAAAVWGAMVNAGQTCISVERVYVHESVYDEFVARL--------VAK 283
Query: 61 VQGSKHYCRIVSDKHF------------QR-LKSLVHSSGTIALGG-DMDASDRFISPTI 106
+ + + D +R + V GG + F PT+
Sbjct: 284 ARALRPGADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALTGGARSNGGGPFYEPTV 343
Query: 107 LVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQ 166
L DV +M EE FGP+LP++ V EAI N L+ +FS + E +
Sbjct: 344 LTDVPHDMDVMREETFGPVLPVMPVADEDEAIALANDSRYGLSASVFSRDLARAEAIARR 403
Query: 167 THSGSMCINDTVM 179
+G++ IND ++
Sbjct: 404 LEAGAVSINDVLL 416
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 81.2 bits (201), Expect = 2e-18
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK--- 65
+++LAV+ + + IN GQ C + + V I ++ L E+++ K
Sbjct: 256 DLDLAVKAIVDSRIINCGQVCTCAERVY----VHEDIYDEFMEKL----VEKMKAVKVGD 307
Query: 66 ------HYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR--FISPTILVDVKPT 113
+V++ +++ +V + T+ GG ++ F PT+L +V+
Sbjct: 308 PFDAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQD 367
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
I+ EEIFGP+LP++ S EAI+ N LT Y+++ N
Sbjct: 368 MEIVQEEIFGPVLPVVKFSSLDEAIELANDSEYGLTSYIYTEN 410
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 80.9 bits (201), Expect = 3e-18
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV--- 52
P + +++ AV + K NAGQTC+ + I V I ++ + V
Sbjct: 232 PFIVFDDADLDKAVDGAIASKFRNAGQTCVCANRIY----VHESIYDEFVEKLVERVKKL 287
Query: 53 -----LDSWYTEQVQ-GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD-RF 101
LD E G +++++ +++++LV + + GG F
Sbjct: 288 KVGNGLD----EGTDMGP-----LINERAVEKVEALVEDAVAKGAKVLTGGKRLGLGGYF 338
Query: 102 ISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQE 161
PT+L DV IM EE FGP+ PII ++ E I N P L Y+F+ +
Sbjct: 339 YEPTVLTDVTDDMLIMNEETFGPVAPIIPFDTEDEVIARANDTPYGLAAYVFTRDLARAW 398
Query: 162 LFIHQTHSGSMCINDTVM 179
+G + IN ++
Sbjct: 399 RVAEALEAGMVGINTGLI 416
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 80.3 bits (199), Expect = 4e-18
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ--AKA----VLD 54
PL + +++LAV +G ++ GQ C+A IL V + + + AKA V D
Sbjct: 214 PLIVLDDADLDLAVSAAAFGAFLHQGQICMAAGRILVHESVYDEFVEKLVAKAKALPVGD 273
Query: 55 SWYTEQV-QGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVD 109
G +++++ R+ ++V + + GG F PT+L D
Sbjct: 274 P-RDPDTVIGP-----LINERQVDRVHAIVEDAVAAGARLLTGGT--YEGLFYQPTVLSD 325
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
V P PI EEIFGP+ P+I + EA++ N L+ +F+ + + F + +
Sbjct: 326 VTPDMPIFREEIFGPVAPVIPFDDDEEAVELANDTEYGLSAAVFTRDLERAMAFAERLET 385
Query: 170 GSMC-INDTVMH 180
G M IND ++
Sbjct: 386 G-MVHINDQTVN 396
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 79.7 bits (197), Expect = 6e-18
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P + +++ + G ++GQ CI + ++ ++ ++L +
Sbjct: 238 PAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYDKLLEILTDRV----QAL 293
Query: 61 VQGSKHYCRI-----VSDKHFQRLKSLVH---SSG-TIALGGDM-----DASDRFISPTI 106
QG + +S F RL+ LV G + GG + PT+
Sbjct: 294 RQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPHPEYPQGHYFPPTL 353
Query: 107 LVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQ 166
LVDV P I EE+FGP++ ++ EA++ N+ L +F + + Q
Sbjct: 354 LVDVTPDMKIAQEEVFGPVMVVMKASDDEEAVEIANSTEYGLGASVFGKDIKRARRIASQ 413
Query: 167 THSGSMCIND-TVMHY 181
+G + IND V +Y
Sbjct: 414 LETGMVAINDFGVNYY 429
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 78.7 bits (195), Expect = 2e-17
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Query: 10 IELAVRRFLWGKC-INAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQG----- 63
+E AV R + C N+GQ+C AP +L R A+ A A +++ V G
Sbjct: 254 LEKAVPRGV-AACFANSGQSCNAPTRMLVPRSRYAEAEEIAAAAAEAY----VVGDPRDP 308
Query: 64 SKHYCRIVSDKHFQRLKSLVHS---SGTIALGGDMDASDR-----FISPTILVDVKPTDP 115
+ + S F R++ + G + G + F+ PT+ DV P
Sbjct: 309 ATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADVTPDMT 368
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
I EEIFGP+L II + EAI N P L Y++S++ + + +G + IN
Sbjct: 369 IAREEIFGPVLSIIPYDDEDEAIAIANDTPYGLAGYVWSADPERARAVARRLRAGQVHIN 428
Query: 176 DT 177
Sbjct: 429 GA 430
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 77.8 bits (192), Expect = 4e-17
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQ----AQILNQAKA--VLD 54
P+ + ++E AV + G+ NAGQ C A IL +V ++ + K V D
Sbjct: 238 PMIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVYDKFLKLLVEKVKKLKVGD 297
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDV 110
G ++S + +R+++LV+ + G I GG D F PT+L +
Sbjct: 298 PLDESTDLGP-----LISPEAVERMENLVNDAVEKGGKILYGGKRDEGS-FFPPTVLEND 351
Query: 111 KPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSG 170
P +M EE+FGP+LPI V+ EA++ N+ L +F+++ + +G
Sbjct: 352 TPDMIVMKEEVFGPVLPIAKVKDDEEAVEIANSTEYGLQASVFTNDINRALKVARELEAG 411
Query: 171 SMCINDT 177
+ IND+
Sbjct: 412 GVVINDS 418
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 77.5 bits (192), Expect = 4e-17
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 22/184 (11%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK--- 65
+++ AV+ + G+ NAGQ+CIA + V + L+ + E + K
Sbjct: 218 DLDKAVKTAVKGRLQNAGQSCIAAKRFI----VHEDV---YDEFLEK-FVEAMAALKVGD 269
Query: 66 ------HYCRIVSDKHFQRLKSLVHSS----GTIALGGD-MDASDRFISPTILVDVKPTD 114
+ L V + T+ LGG D F PT+L DV P
Sbjct: 270 PMDEDTDLGPLARKDLRDELHEQVEEAVAAGATLLLGGKRPDGPGAFYPPTVLTDVTPGM 329
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
P EE+FGP+ +I V+ EAI N P L +F+++ + E + +G + I
Sbjct: 330 PAYDEELFGPVAAVIKVKDEEEAIALANDSPFGLGGSVFTTDLERAERVARRLEAGMVFI 389
Query: 175 NDTV 178
N V
Sbjct: 390 NGMV 393
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 77.3 bits (191), Expect = 5e-17
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 18/165 (10%)
Query: 5 DSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT------ 58
+ +++ A G N G+ C A +L ++ + L + A W
Sbjct: 245 ADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKVVAAAREWKPGDPLDP 304
Query: 59 EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD---MDASDRFISPTILVDVK 111
G+ +VS+ HF ++ + S + GG + F+ PT+ V
Sbjct: 305 ATRMGA-----LVSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGVT 359
Query: 112 PTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
P I EEIFGP+L +I +S EA+ N L +++S+
Sbjct: 360 PDMRIAREEIFGPVLSVITFDSEEEAVALANDSVYGLAASVWTSD 404
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 76.6 bits (189), Expect = 8e-17
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ--AKA----VLDSWYTEQVQ 62
+++LA WG ++ GQ C+A L V + AKA V D T QV
Sbjct: 233 DLDLAASNGAWGAFLHQGQICMAAGRHLVHESVADAYTAKLAAKAKHLPVGDP-ATGQV- 290
Query: 63 GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDVKPTDPIMG 118
+++ + R+ ++V S + GG D F PT+L VKP P
Sbjct: 291 ---ALGPLINARQLDRVHAIVDDSVAAGARLEAGGTYD--GLFYRPTVLSGVKPGMPAFD 345
Query: 119 EEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIND-T 177
EEIFGP+ P+ +S EA+ N L+ + S + + +G + IND T
Sbjct: 346 EEIFGPVAPVTVFDSDEEAVALANDTEYGLSAGIISRDVGRAMALADRLRTGMLHINDQT 405
Query: 178 VMH 180
V
Sbjct: 406 VND 408
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 76.2 bits (188), Expect = 1e-16
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL------DSWYTEQVQ 62
+++ A ++G NAG+ C + +L + + A D E
Sbjct: 242 DLDAAADAVVFGVYFNAGECCNSGSRLLVHESIADAFVAAVVARSRKVRVGDPLDPETKV 301
Query: 63 GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD--RFISPTILVDVKPTDPI 116
G+ I+++ ++ V + T+ LGG+ AS F PTI DV P I
Sbjct: 302 GA-----IINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDMAI 356
Query: 117 MGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIND 176
EEIFGP+L ++ ++ EAI N L+ ++S + + +G++ +N
Sbjct: 357 AREEIFGPVLSVLTFDTVDEAIALANDTVYGLSAGVWSKDIDTALTVARRIRAGTVWVN- 415
Query: 177 TVM 179
T +
Sbjct: 416 TFL 418
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 74.9 bits (184), Expect = 3e-16
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 17/187 (9%)
Query: 2 LYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQILNQAKAVLDSWYTEQ 60
+ +D + + EL V + GQ C A SR + L
Sbjct: 276 IIVDETADFELVVEGVVVSAFGFQGQKCSA-----ASRLILTQGAYEPVLERLLKRAERL 330
Query: 61 VQG-----SKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDMDASD-RFISPTILVDVK 111
G ++ + ++ S + + G + LGG + F++PT++ +V
Sbjct: 331 SVGPPEENGTDLGPVIDAEQEAKVLSYIEHGKNEGQLVLGGKRLEGEGYFVAPTVVEEVP 390
Query: 112 PTDPIMGEEIFGPILPIINVESA--FEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
P I EEIFGP+L +I + EA++ N+ P LT ++S + E + H
Sbjct: 391 PKARIAQEEIFGPVLSVIRYKDDDFAEALEVANSTPYGLTGGVYSRKREHLEEARREFHV 450
Query: 170 GSMCIND 176
G++ IN
Sbjct: 451 GNLYINR 457
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 74.9 bits (185), Expect = 3e-16
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ---------AKA 51
+ +D+ ++E AV R + G NAGQ CI+ I V I ++ K
Sbjct: 236 AVIVDADADLEKAVERCVSGAFANAGQVCISVQRIF----VHEDIYDEFLERFVAATKKL 291
Query: 52 VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTIL 107
V+ E ++S+ +R++ V + + GG D + PT+L
Sbjct: 292 VVGDPLDEDTDVGP----MISEAEAERIEEWVEEAVEGGARLLTGGKRD--GAILEPTVL 345
Query: 108 VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQT 167
DV P ++ EE+F P++ + ++ EAI N P L +F+++ Q +
Sbjct: 346 TDVPPDMKVVCEEVFAPVVSLNPFDTLDEAIAMANDSPYGLQAGVFTNDLQKALKAAREL 405
Query: 168 HSGSMCINDT 177
G + IND+
Sbjct: 406 EVGGVMINDS 415
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 74.8 bits (184), Expect = 4e-16
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT-EQVQGSKHY 67
+++ AVR G N GQ C A +L + + L + ++ S + +
Sbjct: 240 DLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIYDEFLERFTSLARSLRPGDPLDPKTQM 299
Query: 68 CRIVSDKHFQRLKSLV----HSSGTIALGGD-MDASDRFISPTILVDVKPTDPIMGEEIF 122
+VS F R+ V + GG A F+ PTI V P I EEIF
Sbjct: 300 GPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMRIAQEEIF 359
Query: 123 GPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
GP++ ++ EA++ N L +++ + +G++ IN
Sbjct: 360 GPVVSVMRFRDEEEALRIANGTEYGLAAGVWTRDLGRAHRVAAALKAGTVWIN 412
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 74.7 bits (184), Expect = 5e-16
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 24/173 (13%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-AKAVLDSWYTE 59
P + ++++AV+ L K N+GQTC+ + IL VQ I ++ A+A +
Sbjct: 275 PFIVFDDADLDVAVKGALASKFRNSGQTCVCANRIL----VQEGIYDKFAEAFSKAVQKL 330
Query: 60 QV---------QGSKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDMDASD--RFISPT 105
V QG ++++ Q+++S V S G L G S F PT
Sbjct: 331 VVGDGFEEGVTQGP-----LINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEPT 385
Query: 106 ILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQ 158
+L DV I EE+FGP+ P+ ++ EAI N L Y+F+ + Q
Sbjct: 386 VLGDVTEDMLIFREEVFGPVAPLTRFKTEEEAIAIANDTEAGLAAYIFTRDLQ 438
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 72.3 bits (178), Expect = 3e-15
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 27/192 (14%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR-----QVQAQILNQAKA---- 51
+ +D +++ A + GQ C A CSR V + L +
Sbjct: 287 AIIVDEDADLDEAAEGIVRSAFGFQGQKCSA-----CSRVIVHESVYDEFLERLVERTKA 341
Query: 52 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDMDASDR---FIS 103
V D E G ++ R++ + S G + LGG++ F+
Sbjct: 342 LKVGDPEDPEVYMGP-----VIDKGARDRIRRYIEIGKSEGRLLLGGEVLELAAEGYFVQ 396
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELF 163
PTI DV P + EEIFGP+L +I + EA++ N LT +FS + + E
Sbjct: 397 PTIFADVPPDHRLAQEEIFGPVLAVIKAKDFDEALEIANDTEYGLTGGVFSRSPEHLERA 456
Query: 164 IHQTHSGSMCIN 175
+ G++ N
Sbjct: 457 RREFEVGNLYAN 468
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 71.7 bits (176), Expect = 4e-15
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P + +++ AV + K NAGQTC+ + + V I ++ L E
Sbjct: 233 PFIVFDDADLDQAVEGAMASKFRNAGQTCVCANRLY----VHDGIYDEFAKKL----AEA 284
Query: 61 VQ----------GSKHYCRIVSD---KHFQRLKSLVHSSGTIALGGDMDASD-RFISPTI 106
V+ G I K + + V + GG F PT+
Sbjct: 285 VKKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTV 344
Query: 107 LVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
L +V + EE FGP+ P+ + E I N L Y FS +
Sbjct: 345 LSNVTADMLVSKEETFGPLAPVFKFDDEEEVIAIANDTEVGLAAYFFSRD 394
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 70.4 bits (173), Expect = 1e-14
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P + +I+ AV ++GK ++ GQ C+A + I+ V + + + + E+
Sbjct: 246 PFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVYDEFVEK--------FVER 297
Query: 61 VQGSK---------HYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTIL 107
V+ ++++ L + + T+ +GG+ A + PT+L
Sbjct: 298 VKALPYGDPSDPDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGE--AEGNVLEPTVL 355
Query: 108 VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQT 167
DV I EEIFGP+ PII + EA++ N L+ +F+S+ + F +
Sbjct: 356 SDVTNDMEIAREEIFGPVAPIIKADDEEEALELANDTEYGLSGAVFTSDLERGVQFARRI 415
Query: 168 HSGSMCINDT 177
+G IND
Sbjct: 416 DAGMTHINDQ 425
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 67.5 bits (166), Expect = 1e-13
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 30/187 (16%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILC----SRQVQAQILNQAKA-VLDSWYTEQVQ- 62
++E + AGQ C+A + + + +++ +AK + +
Sbjct: 258 DLEQTANALVGAAFGAAGQRCMALSVAVAVGDEADEWIPKLVERAKKLKVGAGDDPGADM 317
Query: 63 GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR-----FISPTILVDVKPT 113
G ++S +R++ L+ S + L G F+ PTIL +V P
Sbjct: 318 GP-----VISPAAKERIEGLIESGVEEGAKLVLDGRGVKVPGYENGNFVGPTILDNVTPD 372
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQVQELFIHQTH 168
I EEIFGP+L I+ V++ EAI INA P Y +F+ + F +
Sbjct: 373 MKIYKEEIFGPVLSIVRVDTLDEAIAIINANP-----YGNGAAIFTRSGAAARKFQREVD 427
Query: 169 SGSMCIN 175
+G + IN
Sbjct: 428 AGMVGIN 434
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 66.6 bits (163), Expect = 2e-13
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 19/191 (9%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ--AKA----VLD 54
PL + + +++ AVR +G ++ GQ C++ I+ V + + + A+A V D
Sbjct: 234 PLIVLADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYDEFVKKFVARASKLKVGD 293
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDV 110
+ V G ++S + +R+K V + + GG D F PT+L DV
Sbjct: 294 PRDPDTVIGP-----LISPRQVERIKRQVEDAVAKGAKLLTGGKYDG--NFYQPTVLTDV 346
Query: 111 KPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSG 170
P I EE FGP+ +I + A EA++ N L+ + +++ Q + SG
Sbjct: 347 TPDMRIFREETFGPVTSVIPAKDAEEALELANDTEYGLSAAILTNDLQRAFKLAERLESG 406
Query: 171 SMC-INDTVMH 180
M IND +
Sbjct: 407 -MVHINDPTIL 416
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 66.5 bits (163), Expect = 3e-13
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR-----QVQAQILNQAKAVLDS 55
+ +D +++LA + +GQ C A CSR V ++L + +
Sbjct: 292 AIVVDEDADLDLAAESIVASAFGFSGQKCSA-----CSRAIVHEDVYDEVLEKVVELTKE 346
Query: 56 WYTEQVQGSKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDMDASD-RFISPTILVDVK 111
+ + + +++ F ++ S + G + LGG+ D S FI PTI DV
Sbjct: 347 LTVGNPEDNAYMGPVINQASFDKIMSYIEIGKEEGRLVLGGEGDDSKGYFIQPTIFADVD 406
Query: 112 PTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
P IM EEIFGP++ I + A++ N LT + S+N
Sbjct: 407 PKARIMQEEIFGPVVAFIKAKDFDHALEIANNTEYGLTGAVISNN 451
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 66.4 bits (163), Expect = 3e-13
Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 8 VNIELAVRRFLWGKCINAGQTCIA------PDYI---LCSRQVQAQILNQAKAVLDSWYT 58
V+I+ + WG IN+GQ C A + I C V AV+
Sbjct: 234 VDIDAVAPKLFWGAFINSGQVCAAIKRLYVHESIYDEFCEALVALA----KAAVVGDGLD 289
Query: 59 EQVQ-GSKHYCRIVSDKHFQRLKSLV----HSSGTIALGGDMDASD-RFISPTILVDVKP 112
G + + + ++K LV + GG+ FI PTI+ D
Sbjct: 290 PGTTLGP-----VQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPGYFIPPTIVDDPPE 344
Query: 113 TDPIMGEEIFGPILPII---NVESAFEAIQFINA 143
I+ EE FGP+LP++ + + E I N
Sbjct: 345 GSRIVDEEQFGPVLPVLKYSDED---EVIARAND 375
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 65.5 bits (160), Expect = 5e-13
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQ----AQILNQAKA--VLD 54
P+ +D +++ A+ G +AGQ CI+ I ++ + K V D
Sbjct: 236 PVIVDRDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELYDEFIEAFVAAVKKLKVGD 295
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDV 110
+ G ++S++ +R++ V + + GG+ D PT+L DV
Sbjct: 296 PLDEDTDVGP-----LISEEAAERVERWVEEAVEAGARLLCGGERD--GALFKPTVLEDV 348
Query: 111 KPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSG 170
+ EE FGP++PII + EAI+ N+ L +F+ + V + G
Sbjct: 349 PRDTKLSTEETFGPVVPIIRYDDFEEAIRIANSTDYGLQAGIFTRDLNVAFKAAEKLEVG 408
Query: 171 SMCIND 176
+ +ND
Sbjct: 409 GVMVND 414
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 64.9 bits (159), Expect = 1e-12
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKHYC 68
+++ A L+G +N+GQ C++ + I+ + + + + KA E++
Sbjct: 224 DLDAAANAALFGAFLNSGQICMSTERIIVHESIADEFVEKLKAA-----AEKLFAGPVVL 278
Query: 69 RI-VSDKHFQRLKSLVHSS----GTIALGG--DMDASDRFISPTILVDVKPTDPIMGEEI 121
VS R+K LV + + +GG D S + PTIL +V P I EE
Sbjct: 279 GSLVSAAAADRVKELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDMDIYSEES 338
Query: 122 FGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
FGP++ II V+ EA++ N L+ +F+ + + SG++ IN +H
Sbjct: 339 FGPVVSIIRVKDEEEAVRIANDSEYGLSAAVFTRDLARALAVAKRIESGAVHINGMTVH 397
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 64.9 bits (158), Expect = 1e-12
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 5/182 (2%)
Query: 2 LYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQV 61
+ +D +IELA + AGQ C A + +V +++ + + +S
Sbjct: 289 VIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAVVHEKVYDEVVERFVEITESLKVGPP 348
Query: 62 QGSKHYCRIVSD-KHFQRLKSLVH---SSGTIALGGDMDASD-RFISPTILVDVKPTDPI 116
+ Y V D K F ++ + + G + GG D S FI PTI DV +
Sbjct: 349 DSADVYVGPVIDQKSFNKIMEYIEIGKAEGRLVSGGCGDDSKGYFIGPTIFADVDRKARL 408
Query: 117 MGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIND 176
EEIFGP++ I EA++ N LT + S+N + G++ N
Sbjct: 409 AQEEIFGPVVAFIRASDFDEALEIANNTEYGLTGGVISNNRDHINRAKAEFEVGNLYFNR 468
Query: 177 TV 178
+
Sbjct: 469 NI 470
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 64.6 bits (158), Expect = 1e-12
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 18/181 (9%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQV-----QG 63
++E A+ + NAGQTC A +L R + ++L + +
Sbjct: 240 DLEAALPVVVNAIIQNAGQTCSAGSRLLVHRSIYDEVLERLVER-----FRALRVGPGLE 294
Query: 64 SKHYCRIVSDKHFQRLKSLV----HSSGTIALGG----DMDASDRFISPTILVDVKPTDP 115
++S K R++ V I GG A F++PT+L DV P
Sbjct: 295 DPDLGPLISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPPDSR 354
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
+ EEIFGP+L ++ + EAI N L +++ + + +G + +N
Sbjct: 355 LAQEEIFGPVLAVMPFDDEAEAIALANGTDYGLVAGVWTRDGDRALRVARRLRAGQVFVN 414
Query: 176 D 176
+
Sbjct: 415 N 415
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 64.5 bits (158), Expect = 2e-12
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 71 VSDKHFQRLKSLVHSS----GTIALGGDMDASDR-----FISPTILVDVKPTDPIMGEEI 121
+S +H +++ V + TI GG F+ PT++ + + EEI
Sbjct: 303 ISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLDNDSRVAQEEI 362
Query: 122 FGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
FGP++ +I + EAI+ N P L Y+++ + + +G++ +N
Sbjct: 363 FGPVVTVIPFDDEEEAIELANDTPYGLAAYVWTRDLGRAHRVARRLEAGTVWVN 416
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 63.8 bits (156), Expect = 3e-12
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 22 CINAGQTCIAPDYILCSRQVQAQILNQAKAVL------DSWYTEQVQGSKHYCRIVSDKH 75
NAGQ C +L R +++ A D V G ++S
Sbjct: 259 MHNAGQGCALTTRLLVPRSRYDEVVEALAAAFEALPVGDPADPGTVMGP-----LISAAQ 313
Query: 76 FQRLKSLVHSS----GTIALGGDMDAS-DR--FISPTILVDVKPTDPIMGEEIFGPILPI 128
R++ + + GG A D+ ++ PT+ DV I EEIFGP+L +
Sbjct: 314 RDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDNDMRIAQEEIFGPVLVV 373
Query: 129 INVESAFEAIQFINARPKPLTLYLFSSNAQ 158
I + EA++ N L+ ++S++
Sbjct: 374 IPYDDDDEAVRIANDSDYGLSGGVWSADVD 403
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 62.8 bits (153), Expect = 4e-12
Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-AKAVLDSWYTEQVQGSK-H 66
+++LAV+ + + IN+GQ C + + + + Q +N+ +A+ + + +
Sbjct: 194 DLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIA 253
Query: 67 YCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD-RFISPTILVDVKPTDPIMGEEI 121
+++ +R++ V + +ALGG + PT+L+DV+ IM EE
Sbjct: 254 MGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEET 313
Query: 122 FGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
FGP+LP++ ++ EAI N LT +++ N
Sbjct: 314 FGPVLPVVAFDTLEEAIAMANDSDYGLTSSIYTQN 348
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 62.6 bits (153), Expect = 5e-12
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 17/188 (9%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P Y+ +++ A + G N+GQ+C + + I V I + +
Sbjct: 230 PAYVRPDADLDAAAESLVDGAFFNSGQSCCSIERIY----VHESIYDAFVEAFVAVVKGY 285
Query: 61 VQG-----SKHYCRIVSDKHFQRLKSLVH---SSGTIALGG-----DMDASDRFISPTIL 107
G S +VS + +++ + + G AL + A +++PT+L
Sbjct: 286 KLGDPLDPSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVL 345
Query: 108 VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQT 167
+V + +M EE FGP++ I+ V+S EAI +N LT +++ + E Q
Sbjct: 346 TNVDHSMRVMREETFGPVVGIMKVKSDAEAIALMNDSEYGLTASVWTKDIARAEALGEQL 405
Query: 168 HSGSMCIN 175
+G++ +N
Sbjct: 406 ETGTVFMN 413
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 62.6 bits (153), Expect = 6e-12
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 20/186 (10%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
+ + +++LAVR L+ AGQ C ++ V + L + +Q
Sbjct: 251 AIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESVYDEFLERLVKA-----YKQ 305
Query: 61 VQ------GSKHYCRIVSDKHFQR----LKSLVHSSGTIALGG---DMDASDRFISPTIL 107
V+ +++ ++ ++ GT+ GG D ++ PTI+
Sbjct: 306 VRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYVEPTIV 365
Query: 108 VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQT 167
V I+ EE F PIL +I +S EAI N P+ L+ +F+ + ++E F
Sbjct: 366 TGVTDDARIVQEETFAPILYVIKFDSLEEAIAINNDVPQGLSSSIFTED--LREAFRWLG 423
Query: 168 HSGSMC 173
GS C
Sbjct: 424 PKGSDC 429
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 62.6 bits (153), Expect = 7e-12
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 26/153 (16%)
Query: 8 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK-- 65
+++ AV + G AGQTC+A +L VQ I ++ L + + +
Sbjct: 241 ADLDAAVNGVVAGIFAAAGQTCVAGSRLL----VQRSIYDEFVERL----VARARAIRVG 292
Query: 66 -------HYCRIVSDKHFQRLKSLVHSS----GTIALGG-----DMDASDRFISPTILVD 109
+ +++ ++++ V + + GG + F PTIL D
Sbjct: 293 DPLDPETQMGPLATERQLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILAD 352
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFIN 142
V I EE+FGP+L +I + EAI N
Sbjct: 353 VTNDMRIAQEEVFGPVLSVIPFDDEEEAIALAN 385
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 62.3 bits (152), Expect = 8e-12
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 25/169 (14%)
Query: 4 IDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQG 63
+DS +++ A +R ++G AGQ+CI+ +L V + ++ K+ L + G
Sbjct: 238 VDSDADLDFAAQRIIFGAFYQAGQSCISVQRVL----VHRSVYDEFKSRLVARVKALKTG 293
Query: 64 --------------SKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVD 109
R+ + V + + GG D + + PTIL D
Sbjct: 294 DPKDDATDVGPMISESEAERV-----EGWVNEAVDAGAKLLTGGKRDGA--LLEPTILED 346
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQ 158
V P + EE+FGP++ + + EA+ +N L +F+ + +
Sbjct: 347 VPPDMEVNCEEVFGPVVTVEPYDDFDEALAAVNDSKFGLQAGVFTRDLE 395
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 61.5 bits (149), Expect = 2e-11
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 24 NAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT-EQVQGSKHYCRIVSDKHFQRLKSL 82
N GQ CIA +L + + L K +W + + ++ H + S
Sbjct: 297 NQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSF 356
Query: 83 VH---SSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQ 139
+ S G + L G I PTI VDV P + EEIFGP+L + S +A+Q
Sbjct: 357 IREGESKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQ 416
Query: 140 FIN 142
N
Sbjct: 417 LAN 419
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 60.7 bits (148), Expect = 3e-11
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLD 54
P + +++ AV +G N GQ C A I + + + + KA V D
Sbjct: 257 PNIVFDDADLDKAVEWAAFGIFFNQGQCCCAGSRIFVQESIYDEFVEKFKARAEKRVVGD 316
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD-RFISPTILVD 109
+ + QG VS F ++ S + S T+ GG+ S FI PT+ D
Sbjct: 317 PFDPDTFQGP-----QVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQPTVFTD 371
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
VK I EEIFGP++ I+ ++ E I+ N L +F+ + +
Sbjct: 372 VKDDMKIAKEEIFGPVVTILKFKTEDEVIERANDTEYGLAAGVFTKDINKALRVSRALKA 431
Query: 170 GSMCIN 175
G++ +N
Sbjct: 432 GTVWVN 437
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 60.6 bits (147), Expect = 3e-11
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLD 54
P + ++E AV +G N GQ C A I + + + + K V D
Sbjct: 260 PNIVFDDADLESAVVWTAYGIFFNHGQVCCAGSRIYVQEGIYDKFVKRFKEKAKKLKVGD 319
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD-RFISPTILVD 109
+ + QG + VS ++R+ S + S T+ GG ++ FI PTI D
Sbjct: 320 PFAEDTFQGPQ-----VSQIQYERIMSYIESGKAEGATVETGGKRHGNEGYFIEPTIFTD 374
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
V I+ EEIFGP++ +I ++ EAI+ N L +F++N + +
Sbjct: 375 VTEDMKIVKEEIFGPVVAVIKFKTEEEAIKRANDSTYGLAAAVFTNNINNAIRVANALKA 434
Query: 170 GSMCIN 175
G++ +N
Sbjct: 435 GTVWVN 440
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 60.1 bits (146), Expect = 5e-11
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 20/192 (10%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT-- 58
P + +++ AV+ G N+GQ C A I + + + + + Y
Sbjct: 259 PALVFEDADLDQAVKWAAAGIMYNSGQNCTATSRIYVQESIYDKFVEKFVEHVKQNYKVG 318
Query: 59 -----EQVQGSKHYCRIVSDKHFQRLKSLVH----SSGTIALGG----DMDASDRFISPT 105
+ V G VS + R+ S + + GG + FI PT
Sbjct: 319 SPFDDDTVVGP-----QVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGKGYFIPPT 373
Query: 106 ILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIH 165
I DV I+ EEIFGP++ I ++ EAI+ N L +F+ + +
Sbjct: 374 IFTDVPQDMRIVKEEIFGPVVVISKFKTYEEAIKKANDTTYGLAAAVFTKDIRRAHRVAR 433
Query: 166 QTHSGSMCINDT 177
+ +G + IN +
Sbjct: 434 ELEAGMVWINSS 445
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 58.1 bits (141), Expect = 2e-10
Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 35/195 (17%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV----QAQILNQAKA----- 51
PL + ++E A + G N+GQ C A IL V ++ ++ A
Sbjct: 233 PLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESVADEFVDLLVEKSAALVVGD 292
Query: 52 ----------VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRF 101
V+D Q++ R++ + + LG +
Sbjct: 293 PMDPATDMGTVIDEEAAIQIEN--------------RVEEAIAQGARVLLGNQRQGA--L 336
Query: 102 ISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQE 161
+PT+L V P ++ EE FGP+ P+I V+ EAI N+ L+ + +++ +
Sbjct: 337 YAPTVLDHVPPDAELVTEETFGPVAPVIRVKDLDEAIAISNSTAYGLSSGVCTNDLDTIK 396
Query: 162 LFIHQTHSGSMCIND 176
+ + G++ +N+
Sbjct: 397 RLVERLDVGTVNVNE 411
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 58.3 bits (141), Expect = 2e-10
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 21/164 (12%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ------ 62
+I+LAVR L+ AGQ C +L + +L Q +L + +QV+
Sbjct: 280 DIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYDDVLEQ---LLTVY--KQVKIGDPLE 334
Query: 63 -----GSKHYCRIVSDKHFQR-LKSLVHSSGTIALGGD-MDASDRFISPTILVDVKPTDP 115
G H S K+F++ ++ + G I GG +++ F+ PTI V++ P
Sbjct: 335 KGTLLGPLHTPE--SKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQPTI-VEISPDAD 391
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQV 159
++ EE+FGP+L ++ ++ EAI+ N+ P+ L+ +F+ N +
Sbjct: 392 VVKEELFGPVLYVMKFKTLEEAIEINNSVPQGLSSSIFTRNPET 435
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 57.4 bits (139), Expect = 4e-10
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P+ + V+++ AV ++G GQ C A +L V +I ++ L W +
Sbjct: 266 PIIVFDDVDLDKAVEWAMFGCFWTNGQICSATSRLL----VHERIASEFLEKLVKW-AKN 320
Query: 61 VQGSKHY---CR---IVSDKHFQRLKSLVH---SSG-TIALGGDMDASDR---FISPTIL 107
++ S CR +VS+ ++++ + S G TI GG + FI PTI+
Sbjct: 321 IKISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGFFIEPTII 380
Query: 108 VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFIN 142
DV + I EE+FGP+L + + EAI+ N
Sbjct: 381 TDVTTSMQIWREEVFGPVLCVKTFSTEDEAIELAN 415
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 57.2 bits (139), Expect = 4e-10
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 18/146 (12%)
Query: 10 IELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL------DSWYTEQVQG 63
++ AV + +N GQ C+A IL R +++ A + D G
Sbjct: 260 LDAAVPGLVPASLMNNGQVCVALTRILVPRSRYDEVVEALAAAVAALKVGDPLDPATQIG 319
Query: 64 SKHYCRIVSDKHFQRLKSLVH---SSG-TIALGG-DMDASDR--FISPTILVDVKPTDPI 116
+ S + +R++ + + G + GG DR F+ PT+ DV I
Sbjct: 320 P-----LASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDNDMRI 374
Query: 117 MGEEIFGPILPIINVESAFEAIQFIN 142
EEIFGP+L +I + +A++ N
Sbjct: 375 AQEEIFGPVLSVIPYDDEDDAVRIAN 400
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 57.1 bits (138), Expect = 4e-10
Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 18/190 (9%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA-----VLDS 55
PL + ++E AV + G +AGQ C + ++++ + L + L
Sbjct: 248 PLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVHKKIKERFLARLVERTERIKLGD 307
Query: 56 WYTEQVQGSKHYCRIVSDKHFQRLKSLVH----SSGTIALGGDMDASDR-----FISPTI 106
+ E + ++S H ++ S + T+A GG + F+ PT+
Sbjct: 308 PFDEATEMGP----LISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGLQNGFFVEPTV 363
Query: 107 LVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQ 166
D I+ EEIFGP++ ++ E I N L +F+++ Q
Sbjct: 364 FADCTDDMTIVREEIFGPVMTVLTFSDEDEVIARANDTEYGLAGGVFTADLGRAHRVADQ 423
Query: 167 THSGSMCIND 176
+G++ IN
Sbjct: 424 LEAGTVWINT 433
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 56.5 bits (137), Expect = 7e-10
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 28/193 (14%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
PL + +++LAV + G + GQ C A ++ V I ++ L E+
Sbjct: 250 PLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLI----VTEGIHDRFVEAL----VER 301
Query: 61 VQGSK---------HYCRIVSDKHFQRLKSL------VHSSGTIALGGD-MDASDR--FI 102
+ K +VS++ + K L + GG+ + D ++
Sbjct: 302 TKALKVGDALDEGVDIGPVVSERQLE--KDLRYIEIARSEGAKLVYGGERLKRPDEGYYL 359
Query: 103 SPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQEL 162
+P + V I EEIFGP+ +I V EA+ N L+ + +++ +
Sbjct: 360 APALFAGVTNDMRIAREEIFGPVAAVIRVRDYDEALAIANDTEFGLSAGIVTTSLKHATH 419
Query: 163 FIHQTHSGSMCIN 175
F + +G + +N
Sbjct: 420 FKRRVEAGVVMVN 432
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 56.6 bits (137), Expect = 8e-10
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQV----QAQILNQAKAV-LDS 55
P+ + +++LA+ LW GQ C A ++ V + + +AK + +
Sbjct: 250 PIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVYDEFLKRFVERAKRLRVGD 309
Query: 56 WYTEQVQGSKHYCRIVSDKHFQRLKSLV----HSSGTIALGG-----DMDASDRFISPTI 106
E+ ++++ +++ + T+ LGG F+ PT+
Sbjct: 310 GLDEETD----MGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGYEKGYFVEPTV 365
Query: 107 LVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFIN 142
DV P I EEIFGP++ +I V S EAI+ N
Sbjct: 366 FTDVTPDMRIAQEEIFGPVVALIEVSSLEEAIEIAN 401
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 56.4 bits (137), Expect = 9e-10
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Query: 4 IDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAK------AVLDSWY 57
+ +++LAVR L+ AGQ C ++ + ++L + K + D
Sbjct: 253 VMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESIYDEVLERLKKAYKQVRIGDPLD 312
Query: 58 TEQVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGD-MDASDRFISPTILVDVKPTDPI 116
+ G H V D + ++ GT+ GG +D ++ PTI V+ PI
Sbjct: 313 DGTLVGPLHTKAAV-DNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEPTI-VEGLSDAPI 370
Query: 117 MGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMC 173
+ EE F PIL ++ ++ EAI + N P+ L+ +F+++ ++ F GS C
Sbjct: 371 VKEETFAPILYVLKFDTLEEAIAWNNEVPQGLSSSIFTTD--LRNAFRWLGPKGSDC 425
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 54.8 bits (132), Expect = 3e-09
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 14/185 (7%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW---- 56
P + +++ AV + N GQ C A + + + +AKA
Sbjct: 257 PFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRVVGD 316
Query: 57 -YTEQV-QGSKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDMDASD-RFISPTILVDV 110
+ + V QG + + ++ + L + H T+ GGD S +I PTI DV
Sbjct: 317 PFRKGVEQGPQ----VDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDV 372
Query: 111 KPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSG 170
K I +EIFGP+ I+ ++ E I+ N L +FS N +G
Sbjct: 373 KDDMKIARDEIFGPVQSILKFKTVDEVIKRANNSKYGLAAGVFSKNIDTANTLSRALKAG 432
Query: 171 SMCIN 175
++ +N
Sbjct: 433 TVWVN 437
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 54.9 bits (132), Expect = 3e-09
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQ 160
++ PT+L V PT EEIFGP+L ++ ++ EAI INA P +F+ +
Sbjct: 359 WVGPTLLERVPPTMKAYQEEIFGPVLCVLEADTLEEAIALINASPYGNGTAIFTRDGAAA 418
Query: 161 ELFIHQTHSGSMCIN 175
F H+ G + +N
Sbjct: 419 RRFQHEIEVGQVGVN 433
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 54.8 bits (132), Expect = 3e-09
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 8 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT-EQVQGSKH 66
+I+ V L ++ GQ C AP+ R +++ + K L S+ + S
Sbjct: 263 ADIDWVVEGLLTAGFLHQGQVCAAPERFYVHRSKFDELVTKLKQALSSFQVGSPMDESVM 322
Query: 67 YCRIVSDKHFQRLKSLV----HSSGTIALGGD-MDASDRFISPTILVDVKPTDPIMGEEI 121
+ + + HF ++ S + I GG+ + F+ PT+++ +M EE
Sbjct: 323 FGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQPTLVLARSADSRLMREET 382
Query: 122 FGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
FGP++ + E E IQ IN P LT ++++N +I + +G++ +N MH
Sbjct: 383 FGPVVSFVPYEDEEELIQLINDTPFGLTASVWTNNLSKALRYIPRIEAGTVWVN---MH 438
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 54.4 bits (131), Expect = 4e-09
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 7 SVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKH 66
S ++E V + G GQ C A + + + + A L
Sbjct: 295 SADVEHVVSGTIRGAFEYQGQKCSACSRLYVPHSLWPRFKGRLLAELSRVKVGDPDDFGT 354
Query: 67 Y-CRIVSDKHFQRLKSLV-----HSSG-TIALGGDMDASD-RFISPTILVDVKPTDPIMG 118
+ ++ +K F ++ + S TI GG D S F+ PT++ P +P+M
Sbjct: 355 FMGAVIDEKSFAKIVKYIEHAKSDPSALTILAGGKYDDSVGYFVEPTVVESKDPQEPLMK 414
Query: 119 EEIFGPILPI 128
EEIFGP+L +
Sbjct: 415 EEIFGPVLTV 424
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 53.5 bits (129), Expect = 7e-09
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 5/155 (3%)
Query: 8 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-AKAVLDSWYTEQVQGSKH 66
+++ AV NAGQ C A + V + + +AV +
Sbjct: 239 ADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVYDEFVAALVEAVSAIRVGDPDDEDTE 298
Query: 67 YCRIVSDKHFQRLKSLVH---SSGTIALGGD-MDASDRFISPTILVDVKPTDPIMGEEIF 122
+ S +R+ V + + GG + F PT++ V D I+ EEIF
Sbjct: 299 MGPLNSAAQRERVAGFVERAPAHARVLTGGRRAEGPGYFYEPTVVAGVAQDDEIVQEEIF 358
Query: 123 GPILPIINVESAFEAIQFINARPKPLTLYLFSSNA 157
GP++ + + EAI+ N L +++ +
Sbjct: 359 GPVVTVQPFDDEDEAIELANDVEYGLASSVWTRDV 393
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 53.5 bits (129), Expect = 8e-09
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 40/201 (19%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P + + + E AV + L G NAGQ C A +L V +S + +
Sbjct: 249 PNIVFADADFETAVDQALNGVFFNAGQVCSAGSRLL---------------VEESIHDKF 293
Query: 61 VQG-SKHYCRI---------------VSDKHFQRLKSLVH---SSG-TIALGG---DMDA 97
V ++ +I VS +H +++ S + G + GG D
Sbjct: 294 VAALAERAKKIKLGNGLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDE 353
Query: 98 SDR--FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSS 155
+ F+ PTI DV T I+ EEIFGP+L + ++ EAI+ N P L +++
Sbjct: 354 LAKGYFVEPTIFDDVDRTMRIVQEEIFGPVLTVERFDTEEEAIRLANDTPYGLAGAVWTK 413
Query: 156 NAQVQELFIHQTHSGSMCIND 176
+ + +G++ IND
Sbjct: 414 DIARANRVARRLRAGTVWIND 434
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 53.1 bits (128), Expect = 1e-08
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 70 IVSDKHFQRLKSLV-----HSSGTIALGGDM-----DASDRFISPTILVDVKPTDPIMGE 119
I+S+K F ++ + S T+ GG + A F+ PTI V + E
Sbjct: 302 IISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGVDNEWRLARE 361
Query: 120 EIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
EIFGP+L I + E I N L Y+++ +
Sbjct: 362 EIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWTRD 398
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 53.1 bits (128), Expect = 1e-08
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQ----ILNQAKAVL--D 54
PL I ++E AV + ++ GQ C + R ++ + ++ + K + D
Sbjct: 230 PLIIFDDADLENAVNGAMMANFLSQGQVCSNGTRVFVQRSIKDEFTERLVERTKKIRIGD 289
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR------FISP 104
+ G+ ++S++H +++ + S+ + GG+ + ++SP
Sbjct: 290 PLDEDTQMGA-----LISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFYVSP 344
Query: 105 TILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFI 164
+L D I+ EEIFGP++ I+ ++ E I+ N L +F+ + Q I
Sbjct: 345 CVLTDCTDDMTIVREEIFGPVMSILPFDTEEEVIRRANDTTYGLAAGVFTRDLQRAHRVI 404
Query: 165 HQTHSGSMCIND 176
Q +G+ IN
Sbjct: 405 AQLQAGTCWINT 416
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 53.1 bits (128), Expect = 1e-08
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW---- 56
P+ + ++E AV ++G N GQ C A +L + L + ++
Sbjct: 235 PIIVFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVHESIADAFLERLATAAEAIRVGD 294
Query: 57 -YTEQVQ-GSKHYCRIVSDKHFQRLKSLV---HSSG-TIALGGDMDASDR---FISPTIL 107
E V+ G +VS ++++ S + G + GG A FI+PT+
Sbjct: 295 PLEEGVRLGP-----LVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVF 349
Query: 108 VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFIN 142
DV I EEIFGP+L + + + EAI N
Sbjct: 350 ADVPTDSRIWREEIFGPVLCVRSFATEDEAIALAN 384
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 53.0 bits (128), Expect = 1e-08
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 30/188 (15%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTC-IAPDYILCSRQVQAQILNQAKAVL-----D 54
PL + +I+ A + + AGQ C A I+ V L +
Sbjct: 212 PLVVWDVADIDAAAYLIVQSAFLTAGQRCTCARRLIVPDGAVGDAFLERLVEAAKRLRIG 271
Query: 55 SWYTEQ-----VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGD-------MDASDRFI 102
+ E + + R + Q L +ALGG+ + A F+
Sbjct: 272 APDAEPPFMGPLIIAAAAARYL--LAQQDL---------LALGGEPLLAMERLVAGTAFL 320
Query: 103 SPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQEL 162
SP I+ DV + EEIFGP+L + + EAI NA L+ L S + + E
Sbjct: 321 SPGII-DVTDAADVPDEEIFGPLLQVYRYDDFDEAIALANATRFGLSAGLLSDDEALFER 379
Query: 163 FIHQTHSG 170
F+ + +G
Sbjct: 380 FLARIRAG 387
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 51.7 bits (124), Expect = 3e-08
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 24 NAGQTCIAPDYILCSRQVQAQILNQAKA------VLDSWYTEQVQGSKHYCRIVSDKHFQ 77
N GQ C A +V + + +AKA V D + QG + + + F+
Sbjct: 334 NQGQCCCAGSRTFVHERVYDEFVEKAKARALKRVVGDPFKKGVEQGPQ-----IDSEQFE 388
Query: 78 R----LKSLVHSSGTIALGGDMDASD-RFISPTILVDVKPTDPIMGEEIFGPILPIINVE 132
+ +KS V S T+ GGD S +I PT+ +V+ I +EIFGP+ I+ +
Sbjct: 389 KILRYIKSGVESGATLECGGDRFGSKGYYIQPTVFSNVQDDMLIAQDEIFGPVQSILKFK 448
Query: 133 SAFEAIQFINARPKPLTLYLFSSN 156
E I+ N L +F+ N
Sbjct: 449 DLDEVIRRANNTRYGLAAGVFTQN 472
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 51.6 bits (124), Expect = 3e-08
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 70 IVSDKHFQRLKSLV---HSSGTIALGGDMDASDR------FISPTILVDVKPTDPIMGEE 120
+VS + + R+ + G + G ++ PT+ DV P I EE
Sbjct: 301 LVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVTPGMRIAREE 360
Query: 121 IFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
IFGP+L ++ E + N LT +++++ + +G + IN + H
Sbjct: 361 IFGPVLSVLRWRDEAEMVAQANGVEYGLTAAIWTNDISQAHRTARRVEAGYVWINGSSRH 420
Query: 181 Y 181
+
Sbjct: 421 F 421
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 51.2 bits (123), Expect = 5e-08
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 26/191 (13%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQILN----------QA 49
P + + +++ AV + N GQ C A SR VQ I + +
Sbjct: 261 PNIVFADADLDYAVEQAHEALFFNMGQCCCAG-----SRTFVQESIYDEFVKRSVERAKK 315
Query: 50 KAVLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSSGT-----IALGGDMDASDRFISP 104
+ V + + + QG + + ++ F+++ L+ S G FI P
Sbjct: 316 RVVGNPFDPKTEQGPQ-----IDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQP 370
Query: 105 TILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFI 164
T+ DV I EEIFGP+ I ++ E I+ N L +F+ + F
Sbjct: 371 TVFSDVTDDMRIAKEEIFGPVQQIFKFKTIDEVIERANNTTYGLAAAVFTKDIDKAITFS 430
Query: 165 HQTHSGSMCIN 175
+ +G++ +N
Sbjct: 431 NALRAGTVWVN 441
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 50.3 bits (121), Expect = 9e-08
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 70 IVSDKHFQRLKSLVH-----SSGTIALGGDMDASD-RFISPTILVDVKPTDPIMGEEIFG 123
++ +K F R+K + I GG D S F+ PT++ P +M EEIFG
Sbjct: 360 VIDEKAFDRIKGYIDHAKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKHKLMTEEIFG 419
Query: 124 PIL 126
P+L
Sbjct: 420 PVL 422
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 50.2 bits (120), Expect = 1e-07
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYT-E 59
PL I ++++AV L G N G+ C+A + + + + + W +
Sbjct: 274 PLLIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQEGIYDEFVKKLVEKAKDWVVGD 333
Query: 60 QVQGSKHYCRIVSDKHFQR-LKSLVH--SSGTIALGGDMDASDR--FISPTILVDVKPTD 114
V + F++ L + H G L G D+ +I PTI DV
Sbjct: 334 PFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYIEPTIFTDVTEDM 393
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFIN 142
I +EIFGP++ ++ ++ EAI+ N
Sbjct: 394 KIAQDEIFGPVMSLMKFKTVEEAIKKAN 421
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 49.4 bits (118), Expect = 2e-07
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 26/197 (13%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ------AKAVLD 54
P + S +++ A + + N GQ+CIA + V + A V D
Sbjct: 237 PFIVMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVHADVYDAFAEKFVARMAALRVGD 296
Query: 55 S---------WYTEQVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGD-MDASDRFISP 104
TEQ G + V D V + TI GG D F P
Sbjct: 297 PTDPDTDVGPLATEQ--GRDEVEKQVDDA--------VAAGATILCGGKRPDGPGWFYPP 346
Query: 105 TILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFI 164
T++ D+ P + EE+FGP+ + V EAI+ NA L ++ + QE FI
Sbjct: 347 TVITDITPDMRLYTEEVFGPVASLYRVADIDEAIEIANATTFGLGSNAWTRDEAEQERFI 406
Query: 165 HQTHSGSMCINDTVMHY 181
+G + IN + Y
Sbjct: 407 DDLEAGQVFINGMTVSY 423
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 49.1 bits (118), Expect = 2e-07
Identities = 25/76 (32%), Positives = 34/76 (44%)
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQ 160
I PT+L V P + EE FGP+LPII V EAI+ N L +F+ +
Sbjct: 358 LIYPTLLDPVTPDMRLAWEEPFGPVLPIIRVNDIEEAIELANKSNYGLQASIFTKDINKA 417
Query: 161 ELFIHQTHSGSMCIND 176
G++ IN
Sbjct: 418 RKLADALEVGTVNINS 433
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 48.2 bits (115), Expect = 5e-07
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 22 CINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKHYC-RIVSDKHFQR-- 78
C++AGQ C ++ R + + A A + S C ++S + R
Sbjct: 278 CMHAGQGCAITTRLVVPRARYDEAVAAAAATMGSIKPGDPADPGTVCGPVISARQRDRVQ 337
Query: 79 --LKSLVHSSGTIALGGDMDASDR----FISPTILVDVKPTDPIMGEEIFGPILPIINVE 132
L V G A GG A DR F+ PT++ + + EEIFGP+L +I +
Sbjct: 338 SYLDLAVAEGGRFACGGGRPA-DRDRGFFVEPTVIAGLDNNARVAREEIFGPVLTVIAHD 396
Query: 133 SAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
+A++ N P L+ +F ++ + + +G++ +N
Sbjct: 397 GDDDAVRIANDSPYGLSGTVFGADPERAAAVAARVRTGTVNVN 439
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 47.7 bits (114), Expect = 7e-07
Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 21/190 (11%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDS----- 55
P+ + +++ A + NAGQ C++ + I V + + + A +
Sbjct: 231 PMIVLEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDEFVRRFVARTRALRLGA 290
Query: 56 ---WYTEQVQGSKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDM---DASDRFISPTI 106
+ + GS ++S R+ + V + G L G D F PT+
Sbjct: 291 ALDYGPDM--GS-----LISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFYEPTV 343
Query: 107 LVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQ 166
L V + EE FGP++ I V EAI+ N L +++ + +
Sbjct: 344 LTGVTEDMELFAEETFGPVVSIYRVADDDEAIELANDTDYGLNASVWTRDGARGRRIAAR 403
Query: 167 THSGSMCIND 176
+G++ +N+
Sbjct: 404 LRAGTVNVNE 413
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 47.6 bits (113), Expect = 8e-07
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 10/164 (6%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQ---AQILNQAKAVLDSWY 57
P + +++ AV L K NAGQTC+ + + V A+ L QA + L
Sbjct: 261 PFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLH--I 318
Query: 58 TEQVQGSKHYCRIVSDKHFQRLKS----LVHSSGTIALGGDMDA-SDRFISPTILVDVKP 112
+ ++ ++ +K +++ + + GG F PTILVDV
Sbjct: 319 GDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHELGGNFFQPTILVDVPA 378
Query: 113 TDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
+ EE FGP+ P+ + + I N L Y ++ +
Sbjct: 379 NAKVAKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARD 422
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 47.2 bits (113), Expect = 1e-06
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 23 INAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKH-----YCRIVSDKHFQ 77
NAGQ C A C Q I + A L + G ++S H
Sbjct: 274 YNAGQDCTAA----CRIYAQRGIYDDLVAKLAAAVATLKVGDPDDEDTELGPLISAAHRD 329
Query: 78 RLKSLV-----HSSGTIALGG-DMDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINV 131
R+ V + GG D + PT+L + D I+ E+FGP++ +
Sbjct: 330 RVAGFVERAKALGHIRVVTGGEAPDGKGYYYEPTLLAGARQDDEIVQREVFGPVVSVTPF 389
Query: 132 ESAFEAIQFIN 142
+ +A+++ N
Sbjct: 390 DDEDQAVRWAN 400
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 47.1 bits (112), Expect = 1e-06
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 70 IVSDKHFQRLKSLVHSS----GTIALGGDMDASDR--------FISPTILVDVKPTDPIM 117
++ +H ++ V ++ TI +GG+ + R ++ PT+ I
Sbjct: 320 LIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFTGADNHMRIA 379
Query: 118 GEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
EEIFGP+L +I + EAI+ N L Y+++++
Sbjct: 380 QEEIFGPVLTVIPFKDEEEAIEKANDTRYGLAGYVWTND 418
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 47.1 bits (112), Expect = 1e-06
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLDSWYTEQVQ 62
N + A+ G N GQ C A I + + + + K V + +
Sbjct: 258 NWDKALEGAQLGILFNQGQVCCAGSRIFVQEGIYDEFVAKLKEKFENVKVGNPLDPDTQM 317
Query: 63 GSKHYCRIVSDKHFQRLKSLV----HSSGTIALGGDMDASDR-----FISPTILVDVKPT 113
G++ V+ ++ S V I GG + FI PT++V+V
Sbjct: 318 GAQ-----VNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVNVTND 372
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFIN 142
+ EEIFGP+ +I ++ E I N
Sbjct: 373 MRVAQEEIFGPVATVIKFKTEDEVIDMAN 401
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 46.7 bits (110), Expect = 2e-06
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 15/179 (8%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILC---SRQVQAQILNQAKAVLDSWYTE------ 59
NI+ + L AGQ C+A ++ ++ + +++ +AKA+ + +E
Sbjct: 371 NIDATLNALLAAGFGAAGQRCMALSTVVFVGDAKSWEDKLVERAKALKVTCGSEPDADLG 430
Query: 60 ---QVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPI 116
Q + CR++ K L+ + G + FI PTIL V P
Sbjct: 431 PVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYE---KGNFIGPTILSGVTPDMEC 487
Query: 117 MGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
EEIFGP+L + S EAI IN +F+S+ F +G + IN
Sbjct: 488 YKEEIFGPVLVCMQANSFDEAISIINKNKYGNGAAIFTSSGAAARKFQMDIEAGQIGIN 546
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 45.2 bits (107), Expect = 5e-06
Identities = 37/181 (20%), Positives = 77/181 (42%), Gaps = 6/181 (3%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P + + ++ELAV+ + G+ N GQ C A + + + + A +
Sbjct: 240 PFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGD 299
Query: 61 VQGSKHY----CRI-VSDKHFQRLKSLVHSSGTIALGGDMDASD-RFISPTILVDVKPTD 114
+ ++ R + D+ ++++ + + LGG+ A + +PT+L +V P
Sbjct: 300 PRDEENALGPMARFDLRDELHHQVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEM 359
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
EE+FGP+ I + A A++ N L+ +F+++ + G + I
Sbjct: 360 TAFREELFGPVAAITVAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVFI 419
Query: 175 N 175
N
Sbjct: 420 N 420
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 44.5 bits (106), Expect = 1e-05
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQ 160
F PT+L V P + EE FGP++ + V EA++ N P L +++ +
Sbjct: 374 FYEPTVLTGVTPDMELAREETFGPVVSVYPVADVDEAVERANDTPYGLNASVWTGDTARG 433
Query: 161 ELFIHQTHSGSMCIND 176
+ +G++ +N+
Sbjct: 434 RAIAARIRAGTVNVNE 449
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 43.3 bits (103), Expect = 2e-05
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 96 DASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESA--FEAIQFINARPKPLTLYLF 153
D + F++P I+ V D + E+FGPIL +I ++ EAI+ INA LTL +
Sbjct: 385 DGNGYFVAPGIIEIVGIFD--LTTEVFGPILHVIRFKAEDLDEAIEDINATGYGLTLGIH 442
Query: 154 SSNAQVQELFIHQTHSGSMCIN 175
S + + E + + +G++ IN
Sbjct: 443 SRDEREIEYWRERVEAGNLYIN 464
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 43.2 bits (102), Expect = 2e-05
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 83 VHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFIN 142
V + G + GD A ++ PTI + + ++ EEIFGP I +S E I N
Sbjct: 348 VVTGGGVPDFGDALAGGAWVQPTIWTGLPDSARVVTEEIFGPCCHIAPFDSEEEVIALAN 407
Query: 143 ARPKPLTLYLFSSN 156
P L +++ +
Sbjct: 408 DTPYGLAASVWTED 421
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 42.8 bits (101), Expect = 3e-05
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 102 ISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINA 143
I P +L +V+P I EE FGP+LP+I + S E I NA
Sbjct: 373 IWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNA 414
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 42.4 bits (100), Expect = 5e-05
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 70 IVSDKHFQRLKSLV---HSSGTIAL--GGDMDASDRFISPTILVDVKPTDPIMGEEIFGP 124
IV +R++ LV + G G D+ + F PT+ +V P I EEIFGP
Sbjct: 331 IVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGPFYPPTLFTNVPPASRIAQEEIFGP 390
Query: 125 ILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
+L ++ +A EA+ N P L ++S N
Sbjct: 391 VLVVLTFRTAKEAVALANNTPYGLAASVWSEN 422
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 41.6 bits (98), Expect = 8e-05
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 20/134 (14%)
Query: 24 NAGQTCIAPDYILCSRQVQAQILNQAKA------VLDSWYTEQVQGSKHYCRIVSDKHFQ 77
N G+ C P L + + + +A V + E + G++ VS +
Sbjct: 278 NQGEVCTCPSRALVQESIYDEFIERAVERFEAIKVGNPLDPETMMGAQ-----VSKDQLE 332
Query: 78 RLKSLV----HSSGTIALGGDM-----DASDRFISPTILVDVKPTDPIMGEEIFGPILPI 128
++ S V + GG+ F PT++ I EEIFGP+L +
Sbjct: 333 KILSYVDIGKEEGAEVLTGGERLTLGGLDKGYFYEPTLIKGGNNDMRIFQEEIFGPVLAV 392
Query: 129 INVESAFEAIQFIN 142
I + EAI N
Sbjct: 393 ITFKDEEEAIAIAN 406
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 41.0 bits (96), Expect = 1e-04
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 82 LVHSSGTIALGGDMDASDRFISPTILVDVKP-TDPIMGEEIFGPILPIINVESAFEAIQF 140
L+ + + LGG F PT+L+ P + E FGP+ EA +
Sbjct: 350 LLAAGAEVRLGGPGRLDGAFFPPTLLLAEDPWAGAVHATEAFGPVATFFPYGDRAEAARL 409
Query: 141 INARPKPLTLYLFSSNAQVQELFI 164
L L +S+ + FI
Sbjct: 410 AARGGGSLVATLATSDPEEARQFI 433
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 41.0 bits (96), Expect = 2e-04
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW-YTE 59
PL + +++ A + G N+GQ C A +L V + +W Y +
Sbjct: 252 PLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLVQESVADRFTELLVEKTRAWRYGD 311
Query: 60 QVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDA----SDRFISPTILVDVKPTDP 115
+ S ++ + ++ V+ + IA G + +PT+L V P+
Sbjct: 312 PMDPSVDMGTVIDEAAAILFEARVNEA--IAQGARLLLGNVRDGALYAPTVLDRVDPSMT 369
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSS 155
++ EE FGP+ P+I +AI+ N+ T Y SS
Sbjct: 370 LVREETFGPVSPVIRFCDIDDAIRISNS-----TAYGLSS 404
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 40.8 bits (95), Expect = 2e-04
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 24 NAGQTCIAPDYILCSRQVQAQI---LNQAKAVLDSWYTEQVQGSKHYCRIVSDKHFQRLK 80
NAGQ C A I R + + L A A L S + S + S H +R+
Sbjct: 274 NAGQDCTAACRIYAQRGIYDTLVEKLGAAVATLKSGAPDD--ESTELGPLSSLAHLERVM 331
Query: 81 SLVHSSG-----TIALGGD-MDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESA 134
V + + GG+ + + +PT+L K D I+ +E+FGP++ I + +
Sbjct: 332 KAVEEAKALGHIKVITGGEKRKGNGYYFAPTLLAGAKQDDAIVQKEVFGPVVSITSFDDE 391
Query: 135 FEAIQFINA 143
+ + + N
Sbjct: 392 EQVVNWAND 400
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 39.5 bits (93), Expect = 4e-04
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 87 GTIALGGDMDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPK 146
G L A+ F++PT+ D I+ EEIFGP++ ++ + E I N
Sbjct: 352 GGERLTEGGFANGAFVAPTVFTDCTDDMTIVREEIFGPVMSVLTFDDEDEVIARANDTEY 411
Query: 147 PLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
L +F+++ IHQ +G IN
Sbjct: 412 GLAAGVFTADLSRAHRVIHQLEAGICWIN 440
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 38.2 bits (89), Expect = 0.001
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQ----AQILNQAKAV---- 52
PL I + +++ AVR + N G+ CIA + + +++ + K +
Sbjct: 263 PLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVEESIHDEFVRRVVEEVKKMKIGD 322
Query: 53 -LDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGG-DMDASDRFISPTILVDV 110
LD Q K + DK + + V T+ GG +D F PT+ DV
Sbjct: 323 PLDRSTDHGPQNHKAHL----DKLVEYCERGVKEGATLVYGGKQVDRPGFFFEPTVFTDV 378
Query: 111 KPTDPIMGEEIFGPILPI 128
+ I EE FGPI+ I
Sbjct: 379 EDHMFIAKEESFGPIMII 396
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 38.2 bits (89), Expect = 0.001
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 31/189 (16%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLD------ 54
PL +D +I+ AV + I+AGQ C C+R++ Q A L
Sbjct: 247 PLIVDEVADIDAAVHLIIQSAFISAGQRCT------CARRLLVPDGAQGDAFLARLVEVA 300
Query: 55 -----SWYTEQVQ---GSKHYCRIVSDKHFQRL----KSLVHSSGTIALGGD-MDASDRF 101
+ + Q G+ ++S + QRL L+ G L +D
Sbjct: 301 ERLTVGAWDAEPQPFMGA-----VISLQAAQRLLAAQAKLLALGGKSLLAMRQLDPGAAL 355
Query: 102 ISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQE 161
++P I +DV + EE FGP+L +I + EAI N L+ L S + ++ +
Sbjct: 356 LTPGI-IDVTGVAELPDEEHFGPLLQVIRYDDFDEAIAIANNTRFGLSAGLLSDDRELYD 414
Query: 162 LFIHQTHSG 170
F+ + +G
Sbjct: 415 RFLLEIRAG 423
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 37.0 bits (86), Expect = 0.004
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 83 VHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFIN 142
V + + GG SD +PT+L+D + +EIFGP++ + + + EAI N
Sbjct: 324 VAAGARLLCGGKR-LSDTTYAPTVLLDPPRDAKVSTQEIFGPVVCVYSYDDLDEAIAQAN 382
Query: 143 ARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIND 176
+ P +F+ + V + + + ++ +ND
Sbjct: 383 SLPVAFQAAVFTKDLDVALKAVRRLDATAVMVND 416
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 36.2 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINA 143
F+ PT+L P I+ EEIFGP+L + + EA+ N
Sbjct: 342 FLRPTLLEVDDPDADIVQEEIFGPVLTLETFDDEAEAVALAND 384
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 34.8 bits (80), Expect = 0.018
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR 39
P YI+ + N++ AVR + K + G C + I+
Sbjct: 219 PAYIERTANVKKAVRDIIDSKTFDNGTICASEQSIIVEE 257
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 33.4 bits (77), Expect = 0.059
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINA 143
++P I+ DV + EE FGP+L ++ + EAI+ N
Sbjct: 357 LLTPGII-DVTGVAELPDEEYFGPLLQVVRYDDFDEAIRLANN 398
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 32.2 bits (74), Expect = 0.13
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 90 ALGGDMDASDRFISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAI 138
A G ++ A R I +V+ P + EE PILP++ V++ EAI
Sbjct: 304 AAGIEVPADIRLI----IVETDKDHPFVVEEQMMPILPVVRVKNFDEAI 348
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 31.3 bits (71), Expect = 0.27
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 103 SPTIL-VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFIN--ARPK-PLTLYLFSSNAQ 158
+P +L +D EE FGPI ++ +S +I+ R +T+ ++S++ +
Sbjct: 426 TPLLLKLDASDEA-AYAEERFGPIAFVVATDSTDHSIELARESVREHGAMTVGVYSTDPE 484
Query: 159 VQE 161
V E
Sbjct: 485 VVE 487
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 29.9 bits (67), Expect = 0.67
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 23/169 (13%)
Query: 4 IDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQG 63
+DS+ E VR L +AGQ C A +LC VQ + ++ ++ E G
Sbjct: 281 VDSTALPEQVVRDVLRSAFDSAGQRCSALR-VLC---VQEDVADRVLTMIQGAMQELKVG 336
Query: 64 SKHYCRIVSD--------------KHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVD 109
H + +D H + + + L L +
Sbjct: 337 VPH--LLTTDVGPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQHGTFVAPTLFE 394
Query: 110 VKPTDPIMGEEIFGPILPII--NVESAFEAIQFINARPKPLTLYLFSSN 156
+ + EE+FGP+L ++ + + IN LT+ + S
Sbjct: 395 LDDIAE-LSEEVFGPVLHVVRYKARELDQIVDQINQTGYGLTMGVHSRI 442
>gnl|CDD|191268 pfam05405, Mt_ATP-synt_B, Mitochondrial ATP synthase B chain
precursor (ATP-synt_B). The Fo sector of the ATP
synthase is a membrane bound complex which mediates
proton transport. It is composed of nine different
polypeptide subunits (a, b, c, d, e, f, g F6, A6L).
Length = 163
Score = 28.4 bits (64), Expect = 1.6
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 37 CSRQVQAQILNQAKAVLDSWY-TEQVQGSKHYCRIVSDKHFQRLKSLV 83
R++QA + + K+ LD+ E + +V+ LK L
Sbjct: 99 FERELQAALYREIKSKLDTLVRKESSVRQREQDHLVNWVISSVLKELS 146
>gnl|CDD|237956 PRK15398, PRK15398, aldehyde dehydrogenase EutE; Provisional.
Length = 465
Score = 28.7 bits (65), Expect = 1.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 106 ILVDVKPTDPIMGEEIFGPILPIINVESAFEAI 138
++V+ P + E+ P+LP++ V+ EAI
Sbjct: 346 LIVETDANHPFVVTELMMPVLPVVRVKDVDEAI 378
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 28.8 bits (64), Expect = 1.9
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 20 GKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLD------SWYTEQVQGSKHYCRIVSD 73
G C+N G T D + S Q A + AK D + Y +++ S C +
Sbjct: 305 GFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQS---CVMRDM 361
Query: 74 KHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEEIFG 123
+HF+++ +L+ + + M A ++ +D KP P + + I G
Sbjct: 362 QHFRKIPALMENPRLFSQYPRMVAD--IMNDMFTIDGKPNQP-VRKMIMG 408
>gnl|CDD|178008 PLN02382, PLN02382, probable sucrose-phosphatase.
Length = 413
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 72 SDKHFQRLKSLVHSSGTI 89
SD+ FQRLKS +G
Sbjct: 305 SDEVFQRLKSSCAPNGVF 322
>gnl|CDD|234286 TIGR03626, L3_arch, archaeal ribosomal protein L3. This model
describes exclusively the archaeal class of ribosomal
protein L3. A separate model (TIGR03625) describes the
bacterial/organelle form, and both belong to Pfam family
pfam00297. Eukaryotic proteins are excluded from this
model [Protein synthesis, Ribosomal proteins: synthesis
and modification].
Length = 330
Score = 28.1 bits (63), Expect = 2.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 105 TILVDVKPTDPIMGEEIFGPI 125
I+VD + P G+EI P+
Sbjct: 48 VIMVDDRKNSPTEGKEISVPV 68
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 27.8 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 116 IMGEEIFGPILPIINVESAFEAIQFIN 142
I EEIFGP+L + + EA++ N
Sbjct: 379 IFQEEIFGPVLAVTTFKDEEEALEIAN 405
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 27.9 bits (63), Expect = 3.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEA------IQFINAR 144
F++PT++ ++ + E+FGP+L ++ F+A I INA
Sbjct: 901 FVAPTLI-EIDSIS-DLEREVFGPVLHVVR----FKADELDRVIDDINAT 944
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 27.9 bits (63), Expect = 3.5
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 17/64 (26%)
Query: 73 DKHFQRLKS---LVHSSGTIALGGDMDASDRFISPTIL----VDVKPTDPIMGEEIFGPI 125
D H +R+K L+ + L + F++PT + + E+FGPI
Sbjct: 882 DAHIERMKREARLLAQ---LPLPAGTENGH-FVAPTAFEIDSISQ------LEREVFGPI 931
Query: 126 LPII 129
L +I
Sbjct: 932 LHVI 935
>gnl|CDD|149273 pfam08123, DOT1, Histone methylation protein DOT1. The DOT1 domain
regulates gene expression by methylating histone H3. H3
methylation by DOT1 has been shown to be required for
the DNA damage checkpoint in yeast.
Length = 205
Score = 27.3 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 58 TEQVQGSKHYCRIVSDKHFQRLKSLVHSSGTI 89
E +Q K C+I+S LKS V + I
Sbjct: 142 KEMLQDLKDGCKIIS------LKSFVPLNYRI 167
>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 355
Score = 27.1 bits (60), Expect = 5.1
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 109 DVKPTDPIMGE-------EIFGPILPIINVESAFEAIQFINARPKPLT 149
D+ PT P G + GP++ ++ A EA++ I PL
Sbjct: 171 DLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLI 218
>gnl|CDD|197307 cd09073, ExoIII_AP-endo, Escherichia coli exonuclease III
(ExoIII)-like apurinic/apyrimidinic (AP) endonucleases.
The ExoIII family AP endonucleases belong to the large
EEP (exonuclease/endonuclease/phosphatase) superfamily
that contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. AP endonucleases participate in the DNA base
excision repair (BER) pathway. AP sites are one of the
most common lesions in cellular DNA. During BER, the
damaged DNA is first recognized by DNA glycosylase. AP
endonucleases then catalyze the hydrolytic cleavage of
the phosphodiester bond 5' to the AP site, which is then
followed by the coordinated actions of DNA polymerase,
deoxyribose phosphatase, and DNA ligase. If left
unrepaired, AP sites block DNA replication, which have
both mutagenic and cytotoxic effects. AP endonucleases
can carry out a wide range of excision and incision
reactions on DNA, including 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, 3'-phosphatase, and
occasionally, nonspecific DNase activities. Different AP
endonuclease enzymes catalyze the different reactions
with different efficiences. Many organisms have two
functional AP endonucleases, for example, APE1/Ref-1 and
Ape2 in humans, Apn1 and Apn2 in bakers yeast, Nape and
NExo in Neisseria meningitides, and exonuclease III
(ExoIII) and endonuclease IV (EndoIV) in Escherichia
coli. Usually, one of the two is the dominant AP
endonuclease, the other has weak AP endonuclease
activity, but exhibits strong 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, and 3'-phosphatase
activities. Class II AP endonucleases have been
classified into two families, designated ExoIII and
EndoIV, based on their homology to the Escherichia coli
enzymes. This family contains the ExoIII family; the
EndoIV family belongs to a different superfamily.
Length = 251
Score = 26.9 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 33 DYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKH 66
DY L S ++ A+ V DS +V+GS H
Sbjct: 218 DYFLVSEEL-------AEKVKDSGILSKVKGSDH 244
>gnl|CDD|176699 cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis
of the antitumor agent chartreusin (cha); and similar
proteins. ChaP is an enzyme involved in the
biosynthesis of the potent antitumor agent chartreusin
(cha). Cha is an aromatic polyketide glycoside produced
by Streptomyces chartreusis. ChaP may play a role as a
meta-cleavage dioxygenase in the oxidative
rearrangement of the anthracyclic polyketide. ChaP
belongs to a conserved domain superfamily that is found
in a variety of structurally related metalloproteins,
including the bleomycin resistance protein, glyoxalase
I, and type I ring-cleaving dioxygenases.
Length = 123
Score = 26.1 bits (58), Expect = 7.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 64 SKHYCRIVSDKHFQRLKSLVHSSGT 88
+HY +VS++ F R+ + + G
Sbjct: 59 PQHYAFLVSEEEFDRIFARIRERGI 83
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 26.9 bits (60), Expect = 8.1
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 73 DKHFQRLKSLVHSSGTIALGGDMD-ASDRFISPTILVDVKPTDPIMGEEIFGPILPII-- 129
++H Q +++ A D S F+ PT L+++ D + E+FGP+L ++
Sbjct: 969 ERHIQAMRAKGRPVFQAARENSEDWQSGTFVPPT-LIELDSFDELK-REVFGPVLHVVRY 1026
Query: 130 NVESAFEAIQFINARPKPLTL 150
N E I+ INA LTL
Sbjct: 1027 NRNQLDELIEQINASGYGLTL 1047
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,971,471
Number of extensions: 804010
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 130
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)