RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11681
(181 letters)
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 290 bits (746), Expect = 3e-98
Identities = 90/181 (49%), Positives = 123/181 (67%), Gaps = 1/181 (0%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P Y+D + ++++A RR WGK +N+GQTC+APDYILC +Q QI+ + K L +Y E
Sbjct: 232 PCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGED 291
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPTDPIMGEE 120
+ S+ Y RI+S +HFQR+ L+ +A GG DA+ R+I+PTIL DV P P+M EE
Sbjct: 292 AKKSRDYGRIISARHFQRVMGLI-EGQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEE 350
Query: 121 IFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTVMH 180
IFGP+LPI+ V S EAIQFIN R KPL LY+FSSN +V + I +T SG + ND ++H
Sbjct: 351 IFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVH 410
Query: 181 Y 181
Sbjct: 411 I 411
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 212 bits (541), Expect = 1e-67
Identities = 60/183 (32%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
PL + +++ V + ++GK IN+GQT IAPDY+ V+ +L + + + E
Sbjct: 242 PLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPE- 300
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSS-GTIALGGDMDASDRFISPTILVDVKPTDPIMGE 119
++V+++ QRL SL+ ++ G + +G D S R +S T++ V+ DP+M E
Sbjct: 301 ---INSTGKLVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSE 357
Query: 120 EIFGPILPIINVESAFEAIQFINA-RPKPLTLYLFSSNAQVQELFIHQTHSGSMCINDTV 178
E+FGPILP++ +S AI +N PKPL +Y+F + V + I+Q SG +N +
Sbjct: 358 ELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQSGDAQVNGVM 417
Query: 179 MHY 181
+H
Sbjct: 418 LHA 420
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 96.5 bits (241), Expect = 6e-24
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
+ +D +++LA L +GQ C A SR +V + + AK
Sbjct: 293 TVVVDRDADLDLAAESILVSAFGFSGQKCSA-----GSRAVIHKDVYDEVLEKTVALAKN 347
Query: 52 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLV---HSSGTIALGGDMDASD-RFISPT 105
V D + G ++ +K F+++ S + G + GG+ D+S FI PT
Sbjct: 348 LTVGDPTNRDNYMGP-----VIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPT 402
Query: 106 ILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIH 165
I+ D+ P IM EEIFGP++ A++ N LT + + N E
Sbjct: 403 IIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKR 462
Query: 166 QTHSGSMCIND 176
+ H G++ N
Sbjct: 463 EFHVGNLYFNR 473
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 91.1 bits (227), Expect = 5e-22
Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 25/186 (13%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ------AKA----VLDSWYT 58
+I+ A + G ++ GQ C++ + ++ V A + ++ D
Sbjct: 274 DIDAAAQAAAVGAFLHQGQICMSINRVI----VDAAVHDEFLEKFVEAVKNIPTGDPSAE 329
Query: 59 EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDVKPTD 114
+ G +++D LK + + T+ + G R + P + DV
Sbjct: 330 GTLVGP-----VINDSQLSGLKEKIELAKKEGATVQVEGP--IEGRLVHPHVFSDVTSDM 382
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
I EEIFGP++ ++ + A + NA L+ ++S + F Q SG + I
Sbjct: 383 EIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHI 442
Query: 175 NDTVMH 180
ND ++
Sbjct: 443 NDLTVN 448
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 89.2 bits (222), Expect = 2e-21
Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 34/194 (17%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
+ +D + + +LA + GQ C A SR + + Y
Sbjct: 294 AIIVDETADFDLAAEGVVVSAYGFQGQKCSA-----ASRLI----------LTQGAYEPV 338
Query: 61 VQGSKHYCR---------------IVSDKHFQRLKSLVHS---SGTIALGGDMDASD-RF 101
++ +VS + +++ S + G + LGG + F
Sbjct: 339 LERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYF 398
Query: 102 ISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQE 161
I+PT+ +V P I EEIFGP+L +I V+ EA++ N P LT ++S + E
Sbjct: 399 IAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLE 458
Query: 162 LFIHQTHSGSMCIN 175
+ H G++ N
Sbjct: 459 WARREFHVGNLYFN 472
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 88.4 bits (220), Expect = 4e-21
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 32/193 (16%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV--- 52
P + +++L + + G +GQ C A + VQ + +Q + V
Sbjct: 265 PAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVF----VQDSVADQLVANIKELVEQL 320
Query: 53 -----LDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFIS 103
D + ++ +K ++ L+ + T+ G +S
Sbjct: 321 TVGSPED----DADITP-----VIDEKSAAFIQGLIDDALENGATLLSGNK--RQGNLLS 369
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELF 163
PT+L DV P + EE FGP+LPII V+ A EAI N L +F+ +
Sbjct: 370 PTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYGLQASIFTKDTDRAINI 429
Query: 164 IHQTHSGSMCIND 176
G++ IN
Sbjct: 430 GKHLEVGTVHINA 442
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 87.6 bits (218), Expect = 6e-21
Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 32/193 (16%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV--- 52
+ ++EL + + G +GQ C A +L V + ++ + V
Sbjct: 256 SAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVL----VMESVADELVEKIREKVLAL 311
Query: 53 -----LDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFIS 103
D + ++ K ++ L++ + T I
Sbjct: 312 TIGNPED----DADITP-----LIDTKSADYVEGLINDANDKGATALTEIK--REGNLIC 360
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELF 163
P + V + EE FGP+LPII V S EAI+ N L +F+++
Sbjct: 361 PILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGI 420
Query: 164 IHQTHSGSMCIND 176
Q G++ IN+
Sbjct: 421 AEQLEVGTVHINN 433
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 85.1 bits (211), Expect = 8e-20
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 25/190 (13%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
+ ID +++ AV L+ GQ C A CSR + ++++ AKA
Sbjct: 787 AIIIDDDADLDEAVPHVLYSAFGFQGQKCSA-----CSRVIVLDAVYDKFIERLVSMAKA 841
Query: 52 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVH---SSGTIALGGDMDASD-RFISPT 105
V S G+ + DK + +K G + + A + F+ T
Sbjct: 842 TKVGPSEDPANYMGA-----VADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGYFVPMT 896
Query: 106 ILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIH 165
I+ +KP I EEIFGP+L ++ + +AI++ N+ LT +FS + +
Sbjct: 897 IIGGIKPEHRIAQEEIFGPVLAVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARR 956
Query: 166 QTHSGSMCIN 175
+ G++ IN
Sbjct: 957 EFRVGNLYIN 966
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 84.2 bits (209), Expect = 1e-19
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQI-------LNQAKAVL---DSWYT 58
+++ AV ++GK I+ GQ C+ + I+ V + L D
Sbjct: 267 DVDRAVDAAIFGKFIHQGQICMIINRII----VHQDVYDEFVEKFTARVKQLPYGDQTDP 322
Query: 59 EQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFISPTILVDVKPTD 114
+ V G +++++ ++ ++ + +A+ G ++P + V
Sbjct: 323 KTVVGP-----LINERQIEKALEIIEQAKTDGIELAVEGK--RVGNVLTPYVFVGADNNS 375
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMC- 173
I E+F PI II S EAI N L+ +F+S+ + E F Q SG M
Sbjct: 376 KIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSG-MTH 434
Query: 174 INDTVMH 180
+ND ++
Sbjct: 435 VNDQSVN 441
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 83.4 bits (207), Expect = 2e-19
Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 18/184 (9%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQILNQAKAVLDSWYTE 59
+ ++ L V L+ AGQ C R + I ++ L Y +
Sbjct: 275 AIIAFEDADLSLVVPSALFAAVGTAGQRCTT-----ARRLFIHESIHDEVVNRLKKAYAQ 329
Query: 60 QVQG-----SKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD-MDASDRFISPTILVD 109
G + Y + + + V + GT+ GG MD ++ PTI+
Sbjct: 330 IRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTG 389
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHS 169
+ I E F PIL + ++ E + N + L+ +F+ + + +F
Sbjct: 390 LGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQGLSSSIFTKD--LGRIFRWLGPK 447
Query: 170 GSMC 173
GS C
Sbjct: 448 GSDC 451
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 82.6 bits (205), Expect = 4e-19
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK--- 65
++ELAV+ + G+ N GQ C A + V+ I A+A D + K
Sbjct: 248 DLELAVKAAVAGRYQNTGQVCAAAKRFI----VEEGI---AQAFTDR-FVAAAAALKMGD 299
Query: 66 ------HYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD-RFISPTILVDVKPTD 114
+ L V +S + LGG+ A + + + T+L DV P
Sbjct: 300 PLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDM 359
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
+E+FGP+ I + A A+ N L+ +F+++ + + G + I
Sbjct: 360 TAFRQELFGPVAAITVAKDAAHALALANDSEFGLSATIFTADDTLAAEMAARLECGGVFI 419
Query: 175 NDTVM 179
N
Sbjct: 420 NGYSA 424
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 82.6 bits (205), Expect = 5e-19
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 35/195 (17%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV--- 52
P + ++ AV + G I AGQ CI+ IL V I ++
Sbjct: 247 PNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMIL----VDESIADKFIEMFVNKAKVL 302
Query: 53 -----LDSWYTEQV-QGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFI 102
LD E+ G ++S +H + ++ +V + G + LGG
Sbjct: 303 NVGNPLD----EKTDVGP-----LISVEHAEWVEKVVEKAIDEGGKLLLGGK--RDKALF 351
Query: 103 SPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQEL 162
PTIL +V + + E F P++PII E I N+ L +F+++
Sbjct: 352 YPTIL-EVDRDNILCKTETFAPVIPIIRTNEE-EMIDIANSTEYGLHSAIFTNDINKSLK 409
Query: 163 FIHQTHSGSMCINDT 177
F G + IND+
Sbjct: 410 FAENLEFGGVVINDS 424
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 81.8 bits (203), Expect = 8e-19
Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 35/198 (17%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV--- 52
P + +++LA + G AGQ C A +L + + + AK +
Sbjct: 269 PAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVL----AERPVYGKLVEEVAKRLSSL 324
Query: 53 -----LDSWYTEQV-QGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDRFI 102
D V G ++S + + + + G + GG ++
Sbjct: 325 RVGDPRD----PTVDVGP-----LISPSAVDEMMAAIEDAVEKGGRVLAGGRRL-GPTYV 374
Query: 103 SPTIL---VDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQV 159
PT + D + E+F P+ + V+ +AI+ N RP L +F +
Sbjct: 375 QPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDVVK 434
Query: 160 QELFIHQTHSGSMCINDT 177
+ G++ IND
Sbjct: 435 IRRAVRLLEVGAIYINDM 452
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 81.4 bits (202), Expect = 1e-18
Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSK--- 65
+ ++ + N GQ C + I+ V+ VL K
Sbjct: 245 DPQVLRNVLNDARTYNDGQVCTSSKRII----VEKSR---YDEVLHE-LKNVFSNLKAGD 296
Query: 66 ------HYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASD-RFISPTILVDVKPTD 114
+ S+K ++L++ V + + S F PTIL D+ +
Sbjct: 297 PLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDN 356
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCI 174
P+ +E+FGPI + VE AIQ N L + S+ + Q +G I
Sbjct: 357 PVFDKEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVI 416
Query: 175 NDTVM 179
N +
Sbjct: 417 NGRWI 421
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 79.1 bits (196), Expect = 6e-18
Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 27/192 (14%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQA----------K 50
PL ++ +++ AV + I+AGQ C +L V A
Sbjct: 254 PLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLL----VPQGAWGDALLARLVAVSAT 309
Query: 51 AVLDSWYTEQV--QGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD-MDASDRFIS 103
+ + + G+ ++S + L L ++
Sbjct: 310 LRVGRFDEQPAPFMGA-----VISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLT 364
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELF 163
P IL DV EE FGP+L +I AI+ NA L L S + + E F
Sbjct: 365 PGIL-DVSAVAERPDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSDSRERFEQF 423
Query: 164 IHQTHSGSMCIN 175
+ ++ +G + N
Sbjct: 424 LVESRAGIVNWN 435
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 78.3 bits (194), Expect = 2e-17
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 8 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVL------DSWYTEQV 61
V+I+ A + N GQ C A +L +++ L + K +
Sbjct: 261 VDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDAFLAELKEQFSQVRVGNPREDGTQ 320
Query: 62 QGSKHYCRIVSDKHFQRLKSLVHSSG-----TIALGGDM--DASDR--FISPTILVDVKP 112
G I+S K F ++++ ++ G + GG + ++ F PTI ++V
Sbjct: 321 VGP-----IISKKQFDQVQNYINK-GIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDN 374
Query: 113 TDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSM 172
I EEIFGP++ +I EAIQ N L Y+ + + +G++
Sbjct: 375 QMTIAQEEIFGPVMSVITYNDLDEAIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTV 434
Query: 173 CIND 176
IN+
Sbjct: 435 EINE 438
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 77.2 bits (191), Expect = 4e-17
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 18/180 (10%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW-----YTEQVQ- 62
++ A+ ++ +NAGQ C+ IL R +I+ + + Q
Sbjct: 268 DLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRYDEIVAAVTNFVTALPVGPPSDPAAQI 327
Query: 63 GSKHYCRIVSDKHFQRLKSLVHS----SGTIALGGDM-DASDR--FISPTILVDVKPTDP 115
G ++S+K R++ + + GG + D FI PT+ DV
Sbjct: 328 GP-----LISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMT 382
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
I EEIFGP+L II ++ +AI N L +++++ Q +G+ IN
Sbjct: 383 IAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGIN 442
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 76.0 bits (188), Expect = 7e-17
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV--------LDS 55
++ELAV+ + + IN+GQ C + + VQ I +Q +A+ +
Sbjct: 265 DLELAVKAIVDSRVINSGQVCNCAERVY----VQKGIYDQFVNRLGEAMQAVQFGNPAER 320
Query: 56 WYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD-MDASDRFISPTILVDV 110
G +++ +R++ V + +A GG ++ + PT+L+DV
Sbjct: 321 NDIAM--GP-----LINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDV 373
Query: 111 KPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
+ IM EE FGP+LP++ ++ +AI N LT +++ N
Sbjct: 374 RQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSSIYTQN 419
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 76.1 bits (188), Expect = 9e-17
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKAVL--DSWY 57
+++ A +G NAGQ CI+ SR + ++L+ ++ V D
Sbjct: 284 DLDAAADGIAYGVYHNAGQCCISG-----SRLLVQEGIRDALMERLLDISRKVAFGDPLN 338
Query: 58 TEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR--FISPTILVDVK 111
G+ ++S+ H +++ S V + + LGG+ + + +PT+ V
Sbjct: 339 ERTKIGA-----MISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVT 393
Query: 112 PTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQVQELFIHQ 166
P I EEIFGP+L + ++A EA+ NA T + ++S+N + I +
Sbjct: 394 PDMSIAREEIFGPVLSTLTFKTADEAVALANA-----TEFGLSASVWSTNLETALQTIRR 448
Query: 167 THSGSMCIND 176
+G IN
Sbjct: 449 IRAGRCWINS 458
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 73.7 bits (182), Expect = 5e-16
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 13 AVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQG--SKHYCRI 70
A++R + N+GQ+C AP +L V+ I ++A + G + I
Sbjct: 287 ALQRGVRHCFYNSGQSCNAPTRML----VEQAIYDKAIKTAKDIAEKTQVGPGHQTGNHI 342
Query: 71 ---VSDKHFQRLKSLVHSSG-----TIALGGDM--DASDR--FISPTILVDVKPTDPIMG 118
VS + + +++ L+ SG T+ GG +R ++ PT+ DVKP I
Sbjct: 343 GPVVSKEQYDKIQDLI-QSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFR 401
Query: 119 EEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELFIHQTHSGSMCIN 175
EEIFGP+L ++ + EA+ N LT Y+ S + Q SG + +N
Sbjct: 402 EEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVN 458
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 73.7 bits (182), Expect = 6e-16
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 38/197 (19%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
P I S +++ AV + + N GQ A SR + + + +AK+
Sbjct: 274 PNIIMSDADMDWAVEQAHFALFFNQGQCSCA-----GSRTFVQEDIYDEFVERSVARAKS 328
Query: 52 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHS----SGTIALGGDMDASDR--FIS 103
V + + ++ QG V + F+++ +++ + GG A+DR FI
Sbjct: 329 RVVGNPFDSKTEQGP-----QVDETQFKKILGYINTGKQEGAKLLCGGG-IAADRGYFIQ 382
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQ 158
PT+ DV+ I EEIFGP++ I+ ++ E + N + Y +F+ +
Sbjct: 383 PTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANN-----STYGLAAAVFTKDLD 437
Query: 159 VQELFIHQTHSGSMCIN 175
+G++ +N
Sbjct: 438 KANYLSQALQAGTVWVN 454
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 73.4 bits (181), Expect = 7e-16
Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 38/197 (19%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
P + + +++ AV G + GQ CIA SR + + + +AK
Sbjct: 275 PCIVFADADLDNAVEFAHQGVFYHQGQCCIA-----ASRLFVEESIYDEFVRRSVERAKK 329
Query: 52 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR--FIS 103
+ + QG + + ++++ L+ S + GG ++ FI
Sbjct: 330 YVLGNPLTPGVSQGP-----QIDKEQYEKILDLIESGKKEGAKLECGGG-PWGNKGYFIQ 383
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQ 158
PT+ DV I EEIFGP+ I+ +S + I+ N T Y +F+++
Sbjct: 384 PTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANN-----TFYGLSAGIFTNDID 438
Query: 159 VQELFIHQTHSGSMCIN 175
SG++ +N
Sbjct: 439 KAITVSSALQSGTVWVN 455
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 73.0 bits (180), Expect = 1e-15
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 38/199 (19%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
PL + V+++ A ++G GQ C A SR + +I+ K
Sbjct: 266 PLVVFEDVDLDKAAEWAIFGCFWTNGQICSA-----TSRLILHESIATEFLNRIVKWIKN 320
Query: 52 --VLDSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGD-MDASDR--FI 102
+ D G +VS+ ++++ V ++ TI GG + + FI
Sbjct: 321 IKISDPLEEGCRLGP-----VVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFI 375
Query: 103 SPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNA 157
PTI+ DV I EE+FGP+L + + EAI N T+Y + S++
Sbjct: 376 EPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAIDLAND-----TVYGLGAAVISNDL 430
Query: 158 QVQELFIHQTHSGSMCIND 176
+ E +G + +N
Sbjct: 431 ERCERVTKAFKAGIVWVNC 449
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 72.6 bits (179), Expect = 1e-15
Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 40/201 (19%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
P I + ELAV + L G +AGQ C A SR + + ++++ K
Sbjct: 285 PNIIFDDADFELAVDQALNGGYFHAGQVCSA-----GSRILVQNSIKDKFEQALIDRVKK 339
Query: 52 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGG---DMDASDR-- 100
+ + + + G ++S +H +++S + + TIA+GG D D
Sbjct: 340 IKLGNGFDADTEMGP-----VISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGL 394
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSS 155
F PT++ + + I+ EE+FGP++ + E+ EAIQ N ++Y +FS
Sbjct: 395 FFEPTVITNCDTSMRIVQEEVFGPVVTVEGFETEQEAIQLAND-----SIYGLAGAVFSK 449
Query: 156 NAQVQELFIHQTHSGSMCIND 176
+ + ++ G++ IND
Sbjct: 450 DIGKAQRVANKLKLGTVWIND 470
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 72.2 bits (178), Expect = 2e-15
Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 40/200 (20%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
PL I +++ A + ++GQ C +R + +A++L + +
Sbjct: 258 PLIIFPDADLDRAADIAVMANFFSSGQVCTN-----GTRVFIHRSQQARFEAKVLERVQR 312
Query: 52 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR----- 100
+ D G +VS H + + + S + GG+
Sbjct: 313 IRLGDPQDENTNFGP-----LVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGA 367
Query: 101 FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSS 155
+++PT+ D + I+ EEIFGP++ I+ + EAI+ N T Y + +
Sbjct: 368 YVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRAND-----TEYGLAAGVVTQ 422
Query: 156 NAQVQELFIHQTHSGSMCIN 175
+ IH+ +G IN
Sbjct: 423 DLARAHRAIHRLEAGICWIN 442
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 72.2 bits (178), Expect = 2e-15
Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 39/199 (19%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
P+ + +IE AV + G ++GQ C +R + + + +A
Sbjct: 264 PMIVFDDADIESAVGGAMLGNFYSSGQVCSN-----GTRVFVQKKAKARFLENLKRRTEA 318
Query: 52 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR----F 101
++ D G +VS +++ S + T+ GG + + +
Sbjct: 319 MILGDPLDYATHLGP-----LVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAY 373
Query: 102 ISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSN 156
+ PT+ DV I EEIFGP++ +++ + E + NA T + +F+++
Sbjct: 374 VQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANA-----TEFGLAGGVFTAD 428
Query: 157 AQVQELFIHQTHSGSMCIN 175
+ +G++ IN
Sbjct: 429 LARAHRVVDGLEAGTLWIN 447
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 71.6 bits (176), Expect = 3e-15
Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 36/196 (18%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P+ ID + +I+ AV L K + G C + ++ V ++ ++ K
Sbjct: 218 PVVIDETADIKRAVASVLMSKTFDNGVVCASEQAVI----VVDEVYDEVKERF------- 266
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGTI--------------ALGGDMDASDRFISPTI 106
+ H ++S +++ ++ G + G + A + +
Sbjct: 267 ---ASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEMAGVKVPADTKVLIGEG 323
Query: 107 LVDVKPTDPIMGEEIFGPILPII---NVESAFE-AIQFINARPKPLTLYLFS---SNAQV 159
L V D E+ P L + N E A A+ + T L++ NA
Sbjct: 324 LGKVSYDDAFAHEK-LSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADR 382
Query: 160 QELFIHQTHSGSMCIN 175
F + + + IN
Sbjct: 383 IRYFGDKMKTARILIN 398
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 70.7 bits (174), Expect = 5e-15
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 42/202 (20%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKA 51
PL I +E AVR L + GQ C +R Q +++ + KA
Sbjct: 269 PLLIFKDCELENAVRGALMANFLTQGQVCTN-----GTRVFVQREIMPQFLEEVVKRTKA 323
Query: 52 VL--DSWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR----- 100
++ D TE G ++S ++ V + + GG+
Sbjct: 324 IVVGDPLLTETRMGG-----LISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKN 378
Query: 101 --FISPTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LF 153
F+SP +L + + + EEIFGP++ ++ ++ E +Q N T + +F
Sbjct: 379 GYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANN-----TTFGLASGVF 433
Query: 154 SSNAQVQELFIHQTHSGSMCIN 175
+ + +G+ IN
Sbjct: 434 TRDISRAHRVAANLEAGTCYIN 455
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 70.7 bits (174), Expect = 6e-15
Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 30/194 (15%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLD 54
PL I + ++ AV+ + N G+ CIA + + Q + + + +
Sbjct: 294 PLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGN 353
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR--FISPTILV 108
+ G + H ++L T+ GG+ F PT+
Sbjct: 354 PLERDTNHGP-----QNHEAHLRKLVEYCQRGVKEGATLVCGGN-QVPRPGFFFQPTVFT 407
Query: 109 DVKPTDPIMGEEIFGPILPII--NVESAFEAIQFINARPKPLTLY-----LFSSNAQVQE 161
DV+ I EE FGPI+ I + NA T + +F+ +
Sbjct: 408 DVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANA-----TEFGLASGVFTRDINKAL 462
Query: 162 LFIHQTHSGSMCIN 175
+ +G++ IN
Sbjct: 463 YVSDKLQAGTVFIN 476
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 70.6 bits (173), Expect = 8e-15
Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 35/194 (18%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQILNQAKAVLDSWYTE 59
+ D++ E + +AGQ C A VQ + A ++ E
Sbjct: 766 AMIADATALPEQVADDVVTSAFRSAGQRCSA-----LRLLFVQEDV---ADRMI-----E 812
Query: 60 QVQGSKHYCRI-------------VSDKHFQRLKSLVH---SSGTIALGGDMDASDRFIS 103
V G+ +I + + QRL + + + + G F++
Sbjct: 813 MVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPAP-EGCFVA 871
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAF--EAIQFINARPKPLTLYLFSSNAQVQE 161
P I + + EE+FGPIL ++ ++ I LTL + S E
Sbjct: 872 PHIFELTEAG--QLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIE 929
Query: 162 LFIHQTHSGSMCIN 175
I + G++ +N
Sbjct: 930 AIIDRVQVGNIYVN 943
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 69.1 bits (170), Expect = 2e-14
Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 29/186 (15%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKA------VLDSWYTEQVQ 62
+IE V NAGQ C A I + + ++ + A
Sbjct: 281 DIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTEL 340
Query: 63 GSKHYCRIVSDKHFQRLKSLVHS-----SGTIALGGDMDASDR--FISPTILVDVKPTDP 115
G + S H +R+ V + GG+ + +PT+L D
Sbjct: 341 GP-----LSSLAHLERVGKAVEEAKATGHIKVITGGE-KRKGNGYYYAPTLLAGALQDDA 394
Query: 116 IMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQVQELFIHQTHSG 170
I+ +E+FGP++ + ++ + + + N + Y +++ + + G
Sbjct: 395 IVQKEVFGPVVSVTPFDNEEQVVNWAND-----SQYGLASSVWTKDVGRAHRVSARLQYG 449
Query: 171 SMCIND 176
+N
Sbjct: 450 CTWVNT 455
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 69.1 bits (170), Expect = 2e-14
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ------ 62
+++ A LWG+ N GQ C + + V A + ++ A V+
Sbjct: 271 DLDKAAEDALWGRFANCGQVCTCVERLY----VHASVYDEFMAKF----LPLVKGLKVGD 322
Query: 63 ----GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGG-----DMDASDRFISPTILVD 109
S+ + + + + +VH + T+A GG + + PT+LVD
Sbjct: 323 PMDADSQMGPKC-NQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVD 381
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
VK + ++ EE FGPILPI+ V S +AI+F N L+ Y+ + +
Sbjct: 382 VKQDNIVVHEETFGPILPIVKVSSMEQAIEFCNDSIYGLSAYVHTQS 428
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 68.0 bits (167), Expect = 5e-14
Identities = 37/191 (19%), Positives = 65/191 (34%), Gaps = 39/191 (20%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSR---------QVQAQILNQAKAVL--DSWY 57
++E V NAGQ C A R ++ A + + +
Sbjct: 283 DLEAVVNGIRTFGYYNAGQDCTAA-----CRIYAEAGIYEKLVADLTSAVSTIRYNLDDD 337
Query: 58 TEQVQGSKHYCRIVSDKHFQRLKSLVHSSG-----TIALGGDMDASDR--FISPTILVDV 110
TE G ++S + R+ S V + I GG SD F PT++
Sbjct: 338 TENEIGP-----LISRRQRDRVASFVERAADQKHIEITTGGRT-GSDEGFFFQPTVVAGA 391
Query: 111 KPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQVQELFIH 165
D I+ E+FGP++ + +A+ + N + Y +++ +
Sbjct: 392 TQEDEIVRREVFGPVVSVTRFTGKDDAVAWAND-----SDYGLASSVWTKDISKAMRAAS 446
Query: 166 QTHSGSMCIND 176
+ G IN
Sbjct: 447 RLQYGCTWINT 457
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 67.6 bits (166), Expect = 6e-14
Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 25/183 (13%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYIL----CSRQVQAQILNQAKAV-LDSWYTEQVQG 63
N+E V + +AG+ C+A + + + A++ + + + + + V
Sbjct: 263 NLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVF- 321
Query: 64 SKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR--FISPTILVDVKPTDPIM 117
++ + + +R S + + G + SD F+ PTI +V I
Sbjct: 322 ---LGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIW 378
Query: 118 GEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQVQELFIHQTHSGSM 172
+EIF P+L +I V++ EAI+ N + LF+SN+ F +G +
Sbjct: 379 KDEIFAPVLSVIRVKNLKEAIEIANKSE-----FANGACLFTSNSNAIRYFRENIDAGML 433
Query: 173 CIN 175
IN
Sbjct: 434 GIN 436
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 67.5 bits (166), Expect = 7e-14
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 24/163 (14%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ------ 62
+++ AV L K NAGQTC+ + + VQ + ++ L + +
Sbjct: 268 DLDKAVEGALASKFRNAGQTCVCANRLY----VQDGVYDRFAEKL----QQAMSKLHIGD 319
Query: 63 ----GSKHYCRIVSDKHFQRLKSLVH---SSG-TIALGGD-MDASDRFISPTILVDVKPT 113
G I +K +++ + G + GG + F PTILVDV
Sbjct: 320 GLDNGVTIGPLI-DEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPAN 378
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
+ EE FGP+ P+ + + I N L Y ++ +
Sbjct: 379 AKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARD 421
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 67.6 bits (166), Expect = 7e-14
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 24/163 (14%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ------ 62
+++ AV + K N GQTC+ + V ++ + L V
Sbjct: 271 DLDAAVEGAIASKYRNNGQTCVCTNRFF----VHERVYDAFADKL----AAAVSKLKVGR 322
Query: 63 ----GSKHYCRIVSDKHFQRLKSLVH---SSG-TIALGGD-MDASDRFISPTILVDVKPT 113
G+ I ++ ++++S + + G ++ GG F PT+L VKP
Sbjct: 323 GTESGATLGPLI-NEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPD 381
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
+ EE FGP+ P+ S E ++ N L YL+S +
Sbjct: 382 MDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRD 424
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 67.6 bits (166), Expect = 7e-14
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ------ 62
+++ AV + K NAGQTC+ + I VQ + ++ L +V+
Sbjct: 291 DLDAAVDGAMVSKYRNAGQTCVCANRIY----VQRGVYDKFAEKL----AAKVKELKVGN 342
Query: 63 ----GSKHYCRIVSDKHFQRLKSLVH---SSG-TIALGGDMDASDRFISPTILVDVKPTD 114
G I +K ++K+ + S G + GG + F P IL V
Sbjct: 343 GTEPGVVIGPMI-EEKAITKVKAHIEDAVSKGAKLITGGK-ELGGLFFEPGILTGVTSDM 400
Query: 115 PIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
+ EE FGP+ P+ ++ E I N L Y ++ N
Sbjct: 401 LVAKEETFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTEN 442
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 67.4 bits (165), Expect = 1e-13
Identities = 36/194 (18%), Positives = 58/194 (29%), Gaps = 35/194 (18%)
Query: 1 PLYIDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQ 60
P +I+ S NI AV+ L K + G C + ++ V+ A
Sbjct: 223 PAFIERSANIPRAVKHILDSKTFDNGTICASEQSVV----VERVNKEAVIAEF------- 271
Query: 61 VQGSKHYCRIVSDKHFQRLKSLVHSSGT-------------IA--LGGDMDASDRFISPT 105
K +SD +L + IA G + A R +
Sbjct: 272 ---RKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVL-IA 327
Query: 106 ILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKP----LTLYLFSSNAQVQE 161
V P E PIL E+ EA + TL + S + ++
Sbjct: 328 EETKVGAKIPYS-REKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIR 386
Query: 162 LFIHQTHSGSMCIN 175
F + + +N
Sbjct: 387 EFALKKPVSRLLVN 400
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 67.2 bits (165), Expect = 1e-13
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQ-----AKAV---------LD 54
N++ AV + K N GQTC+ + L VQ I + A+A+ +
Sbjct: 272 NVDQAVAGAMASKFRNTGQTCVCSNQFL----VQRGIHDAFVKAFAEAMKKNLRVGNGFE 327
Query: 55 SWYTEQVQGSKHYCRIVSDKHFQRLKSLVH---SSG-TIALGGD-MDASDRFISPTILVD 109
+G+ I ++K ++++ V+ S G T+ GG F PT+L +
Sbjct: 328 -------EGTTQGPLI-NEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCN 379
Query: 110 VKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
V EE FGP+ P+I ++ EAI NA L Y +S +
Sbjct: 380 VTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQD 426
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 66.0 bits (162), Expect = 3e-13
Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ------ 62
++E A + K GQTC+ + I V ++ + L E+V
Sbjct: 270 DLEAAADNLIANKFRGGGQTCVCANRIF----VHEKVADAFGQKL----AERVNKMTVGD 321
Query: 63 ----GSKHYCRIVSDKHFQRLKSLVH---SSG-TIALGGDMDA--SDRFISPTILVDVKP 112
G I + + F ++K + G ++ G F PT++ V
Sbjct: 322 GMNDGIDIGPLI-NKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDR 380
Query: 113 TDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSN 156
EE FGP++P+ + E I N L Y+F+++
Sbjct: 381 EMCCYQEETFGPLVPMALFRTEEEVIDAGNDTEFGLASYVFTAD 424
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 63.5 bits (155), Expect = 2e-12
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 13 AVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQ-GSKHYCRIV 71
+F+ + GQ C P + + Q + L + +
Sbjct: 273 LADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQSPSTLLTP-----GI 327
Query: 72 SDKHFQRLKSLVHSSG-TIALGGDMDASDRFISPTILV---DVKPTDPIMGEEIFGPILP 127
D + ++ S G + A ++ + V + P EEIFGP
Sbjct: 328 RDSYQSQVVSRGSDDGIDVTFSQ---AESPCVASALFVTSSENWRKHPAWEEEIFGPQSL 384
Query: 128 IINVESAFEAIQFINARPKPLTLYLFSSNA 157
I+ E+ + + LT + ++
Sbjct: 385 IVVCENVADMLSLSEMLAGSLTATIHATEE 414
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 62.7 bits (153), Expect = 4e-12
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 27/193 (13%)
Query: 4 IDSSVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQILNQAKAVLDSWYTEQVQ 62
+ SS +++ V L GQ C A CSR V + Q K L ++
Sbjct: 323 VHSSADVDSVVSGTLRSAFEYGGQKCSA-----CSRLYVPKSLWPQIKGRLLEEHSRIKV 377
Query: 63 GS-----KHYCRIVSDKH-FQRLKSLVH---SSG--TIALGGDMDASD-RFISPTILVDV 110
G + V D F R+K + SS +I GG + S ++ P I+
Sbjct: 378 GDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESK 437
Query: 111 KPTDPIMGEEIFGPILPIINVE-SAF-EAIQFINAR-PKPLTLYLFSSN----AQVQELF 163
P +PIM EEIFGP+L + + E ++ +++ LT +F+ + + +
Sbjct: 438 DPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRML 497
Query: 164 IHQTHSGSMCIND 176
+ +G+ IND
Sbjct: 498 --RNAAGNFYIND 508
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 61.9 bits (151), Expect = 6e-12
Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 29/187 (15%)
Query: 9 NIELAVRRFLWGKCINAGQTCIAPDYILC-----SRQVQAQILNQAKAV-LDSWYTEQVQ 62
+++ A + +AG+ C+A + + ++ +++ +++ + + E+
Sbjct: 284 DLDQAANALIGAGYGSAGERCMAISVAVPVGEETANRLIDKLVPMVESLRIGPYTDEKAD 343
Query: 63 GSKHYCRIVSDKHFQRLKSLVHSS----GTIALGG---DMDASDR--FISPTILVDVKPT 113
+V+ + QR++SL+ S + + G + + FI + DV P
Sbjct: 344 ----MGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPD 399
Query: 114 DPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLY-----LFSSNAQVQELFIHQTH 168
I EIFGP+L ++ + EA+ Y +++ + F + +
Sbjct: 400 MDIYKTEIFGPVLSVVRARNYEEALSLPMKHE-----YGNGVAIYTRDGDAARDFASRIN 454
Query: 169 SGSMCIN 175
G + +N
Sbjct: 455 IGMVGVN 461
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 60.3 bits (147), Expect = 2e-11
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 35/192 (18%)
Query: 8 VNIELAVRRFLWGKCINAGQTCIAPDYILCSRQ-VQAQI--------LNQAKAVL--DSW 56
++E A+ ++ G+ C A SR V+ +I + +A+A+
Sbjct: 284 ADLERALDAVVFQIFSFNGERCTAS-----SRLLVEEKIFEDFVGKVVERARAIRVGHPL 338
Query: 57 YTEQVQGSKHYCRIVSDKHFQRLKSLVHSS----GTIALGGDMDASDR---------FIS 103
E G ++ +H QR+ V + + +GG+ + ++
Sbjct: 339 DPETEVGP-----LIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLL 393
Query: 104 PTILVDVKPTDPIMGEEIFGPILPIINVESAFEAIQFINARPKPLTLYLFSSNAQVQELF 163
PT+ V + I EEIFGP+L I + EA++ N L Y+F+ + +
Sbjct: 394 PTVFVG-ENHMKIAQEEIFGPVLVAIPFKDEEEALRKANDTKYGLAAYVFTRDLERAHRL 452
Query: 164 IHQTHSGSMCIN 175
+ +G + +N
Sbjct: 453 ALELEAGMVYLN 464
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 58.8 bits (143), Expect = 7e-11
Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 31/196 (15%)
Query: 7 SVNIELAVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSW-----YTEQV 61
+ +L ++ + + +GQ C A +L KA L + V
Sbjct: 277 TPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAALEPVLEALKAKLAKITVGNPRNDAV 336
Query: 62 Q-GSKHYCRIVSDKHFQR----LKSLVHSSGTIALGGDMDASDR------FISPTILV-- 108
+ GS +VS + ++ + +L + + D ++P + V
Sbjct: 337 RMGS-----LVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVN 391
Query: 109 DVKPTDPIMGEEIFGPILPII--------NVESAFEAIQFINARPKPLTLYLFSSNAQVQ 160
D + E+FGP+ + N A+ L ++S++
Sbjct: 392 DPDNATLLHDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHL 451
Query: 161 ELFIHQTHSGSMCIND 176
+ ++
Sbjct: 452 GRLALELADSHGRVHA 467
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 55.9 bits (135), Expect = 9e-10
Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 14/151 (9%)
Query: 13 AVRRFLWGKCINAGQTCIAPDYILCSRQVQAQILNQAKAVLDSWYTEQVQGSKHYCRI-- 70
+ + + AGQ C P + A A E + +
Sbjct: 307 LGQGWAGSLTMGAGQFCTNPGIAVVIEGADADRFTTAAV-------EALAKVAPQTMLTD 359
Query: 71 -VSDKHFQRLKSLVHSSGTIALGGDMDASDRFISPTILVDVKPT---DPIMGEEIFGPIL 126
++ + + L ++S R SP + D +GEE+FGP+
Sbjct: 360 GIAKAYRDGQARFATRNAVKPLLAT-ESSGRDASPNLFETTGAQFLADHALGEEVFGPLG 418
Query: 127 PIINVESAFEAIQFINARPKPLTLYLFSSNA 157
++ V S E + LT +
Sbjct: 419 LVVRVGSPAEMEELARGFQGQLTATIHMDAG 449
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 3e-04
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 38 SRQVQAQILNQAKAVLDSWY---TEQVQGSKHYCRIVSDKHF--QR 78
S+ ++ + +AK L+ W +EQV+ +K RI +DK F Q
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI-ADKAFYQQP 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.23
Identities = 27/210 (12%), Positives = 63/210 (30%), Gaps = 45/210 (21%)
Query: 4 IDSSVNIELAVRRFLWGKCINAGQT-------CIAPDYILCSRQVQAQILNQAKAVLDSW 56
I S + R W + + +Y ++ + + +++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRM 111
Query: 57 YTEQVQGSKHYCRIVSDKHFQR----------LKSLVHSSGTIALGGDMDASDRFISPTI 106
Y EQ + ++ + + R L L + + + G + S + T
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDG-VLGSGK----TW 165
Query: 107 LV-DV---KPTDPIMGEEIFGPILPIINVESAFEAIQFINA--------------RPKPL 148
+ DV M +IF L + N S ++ + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 149 TLYLFSSNAQVQELFIHQTHSGSMCINDTV 178
L + S A+++ L + + + + V
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.3 bits (62), Expect = 1.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 38 SRQVQAQILNQAKAVLDSWY---TEQVQGSKHYCRIVSDKHF 76
S+ ++ + +AK L+ W +EQV+ +K RI +DK F
Sbjct: 120 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI-ADKAF 160
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding,
autocatal cleavage, DNA replication, DNA-binding,
endonuclease; 1.90A {Mycobacterium tuberculosis}
Length = 200
Score = 27.2 bits (61), Expect = 2.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 65 KHYCRIVSDKHFQRLKSLVHSSGTIA 90
+Y IV++K R LV + +
Sbjct: 120 GYYASIVAEKALLR--RLVEAGTRVV 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A
{Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A
2r6e_A 2vyf_A 2vye_A
Length = 454
Score = 27.1 bits (61), Expect = 3.8
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 65 KHYCRIVSDKHFQRLKSLVHSSGTIA 90
++Y RIV +K R L+ ++ +IA
Sbjct: 103 EYYARIVEEKSVLR--RLIRTATSIA 126
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
aquaticus}
Length = 444
Score = 27.1 bits (61), Expect = 4.1
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 65 KHYCRIVSDKHFQRLKSLVHSSGTIA 90
+HY RIV++K R L+ ++G
Sbjct: 100 EHYARIVAEKWTLR--RLIQAAGEAM 123
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 26.7 bits (60), Expect = 4.8
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 65 KHYCRIVSDKHFQRLKSLVHSSGTIA 90
K +C+ VS+ +R + + I
Sbjct: 100 KQHCQTVSEYFQKR--KAISIAQQII 123
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication,
ATP-binding, autocatalytic cleavage, DNA replication;
2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Length = 123
Score = 25.6 bits (57), Expect = 6.3
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 65 KHYCRIVSDKHFQRLKSLVHSSGTIA 90
+ Y + + +R L + TI
Sbjct: 95 EAYVEEIKNASIKR--KLFGLANTIR 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,666,190
Number of extensions: 144826
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 71
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)