BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11684
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V6Y3|RT16_DROME Probable 28S ribosomal protein S16, mitochondrial OS=Drosophila
melanogaster GN=mRpS16 PE=2 SV=1
Length = 129
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 70/156 (44%), Gaps = 55/156 (35%)
Query: 32 PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
PASG + +K IR R GCTNRPFYHIVV+
Sbjct: 5 PASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVME------------------------- 39
Query: 92 NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
R + QP IEQ+G+FDPLPN+Y E+LV+LN ERIRY
Sbjct: 40 -----------------------RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRY 76
Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
WLG H+++P EL G + L + P ++
Sbjct: 77 WLG-KGAHLSTPAAELLG-----IAGLLPIHPRTYM 106
>sp|Q10129|RT16_CAEEL Probable 28S ribosomal protein S16, mitochondrial OS=Caenorhabditis
elegans GN=F56D1.3 PE=3 SV=2
Length = 147
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 49/141 (34%)
Query: 46 SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
SI LA +GCTNRPFYH+ V + ++G
Sbjct: 14 SIGLALFGCTNRPFYHVCVF------------------------------PDRALG---- 39
Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRE 165
+++ I +EQ+GTFDPLPN+ EKLV+LN R++YW+G + HI+ PV E
Sbjct: 40 -RRYEGNI---------LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLE 89
Query: 166 LFGKLNIDLTNLCDLRPSQWL 186
L G L+ L + P ++
Sbjct: 90 LLG-----LSGLFPIHPKSFI 105
>sp|Q9CPX7|RT16_MOUSE 28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16
PE=2 SV=1
Length = 135
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 48/131 (36%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYHGGHLTIRLALGGCTNRPFYRIVAAHN------------------------------ 39
Query: 98 HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
+ R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G
Sbjct: 40 -----------------KCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-A 81
Query: 158 HITSPVRELFG 168
H++ P+ +L G
Sbjct: 82 HLSKPMEKLLG 92
>sp|Q5REY4|RT16_PONAB 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16
PE=2 SV=1
Length = 137
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 48/131 (36%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
K G +IRLA GCTNRPFY IV H+ +C
Sbjct: 10 KAYRGGHLTIRLALGGCTNRPFYRIVAAHN---------------------KCP------ 42
Query: 98 HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G
Sbjct: 43 --------------------RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-A 81
Query: 158 HITSPVRELFG 168
H++ P+ +L G
Sbjct: 82 HLSKPMEKLLG 92
>sp|P82915|RT16_BOVIN 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16
PE=1 SV=2
Length = 135
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 48/131 (36%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYRGGHLTIRLALGGCTNRPFYRIVAAHN------------------------------ 39
Query: 98 HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
+ R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G
Sbjct: 40 -----------------KCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCG-A 81
Query: 158 HITSPVRELFG 168
H++ PV +L G
Sbjct: 82 HLSKPVEKLLG 92
>sp|Q9Y3D3|RT16_HUMAN 28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16
PE=1 SV=1
Length = 137
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 48/131 (36%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
K G +IRLA GCTNRPFY IV H+ +C
Sbjct: 10 KAYRGGHLTIRLALGGCTNRPFYRIVAAHN---------------------KCP------ 42
Query: 98 HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G
Sbjct: 43 --------------------RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-A 81
Query: 158 HITSPVRELFG 168
H++ P+ +L G
Sbjct: 82 HLSKPMEKLLG 92
>sp|O43020|RT16_SCHPO Probable 37S ribosomal protein S16, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrps16 PE=3 SV=2
Length = 96
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 54/119 (45%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M IRLAR+G NRPFYHIVV ++
Sbjct: 1 MVVKIRLARHGVRNRPFYHIVVANA----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQE-------KLVSLNIERIRYWLGT 154
W + +PIE +GTFDP+P + K + LN+ER +YW+
Sbjct: 26 ------WKAP------QAKPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVERFKYWISV 72
>sp|Q2RV59|RS16_RHORT 30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rpsP PE=3 SV=1
Length = 124
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 47/115 (40%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR G RPFY IVV S
Sbjct: 1 MSLRIRLARGGAKKRPFYRIVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
R R+ + IE+LGTFDP+ E+ V L ER++YWLG +
Sbjct: 26 ------------RSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGAL 68
>sp|A8LMC0|RS16_DINSH 30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rpsP PE=3 SV=1
Length = 130
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 47/111 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY IV S
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
RM R+ + IE+LGT++PL + E V +++ER++YWLG
Sbjct: 26 ------------RMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLG 64
>sp|P08580|RT16_NEUCR Ribosomal protein S16, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=cyt-21 PE=3 SV=2
Length = 107
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 54/118 (45%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M +RLAR+G TN PFY+IVV H+
Sbjct: 1 MVLKLRLARFGRTNAPFYNIVVAHA----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLP--NEYQE-----KLVSLNIERIRYWLG 153
R RN +P+E +GT+DP+P + Y K + L++ R +YW+G
Sbjct: 26 ------------RTARNSKPLEVIGTYDPVPKKDTYDTTGKLHKDIKLDVTRAKYWIG 71
>sp|Q16AN8|RS16_ROSDO 30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rpsP PE=3 SV=1
Length = 122
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY IV S
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
RM R+ + IE+LGT++PL + E+ V ++ ER++YWLG
Sbjct: 26 ------------RMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQG 66
>sp|Q5LNF2|RS16_RUEPO 30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=rpsP PE=3 SV=1
Length = 121
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 47/110 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY IV S
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
RM R+ + IE+LGT++PL + E+ V +++ER++YWL
Sbjct: 26 ------------RMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWL 63
>sp|Q7NRV5|RS16_CHRVO 30S ribosomal protein S16 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsP PE=3 SV=1
Length = 83
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 48/109 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G NRPFY+IVV S
Sbjct: 4 IRLARGGAKNRPFYNIVVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R RR+ + IE++G ++P+ NE QE+ V ++R+ YW+G
Sbjct: 25 --------RNRRDGRFIERVGFYNPVANEKQER-VRFTMDRLNYWVGVG 64
>sp|A1B8V3|RS16_PARDP 30S ribosomal protein S16 OS=Paracoccus denitrificans (strain Pd
1222) GN=rpsP PE=3 SV=1
Length = 124
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RP Y IV S
Sbjct: 1 MAMKIRLARGGSKKRPHYAIVASDS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
RM R+ + IE+LGT++PL + E + +N+ER++YWLG
Sbjct: 26 ------------RMPRDGRFIEKLGTYNPLLPKDSEDRIKMNLERVQYWLGQG 66
>sp|Q60BS3|RS16_METCA 30S ribosomal protein S16 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rpsP PE=3 SV=1
Length = 84
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 48/110 (43%)
Query: 46 SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
SIRLAR G RPFYH+VV S
Sbjct: 3 SIRLARGGAKKRPFYHVVVAES-------------------------------------- 24
Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R +R+ + IE++G F+P+ +E+L L+ RI YW+GT
Sbjct: 25 ---------RSKRDGRYIERVGFFNPIARGQEERL-RLDESRIAYWIGTG 64
>sp|Q2GHR7|RS16_EHRCR 30S ribosomal protein S16 OS=Ehrlichia chaffeensis (strain
Arkansas) GN=rpsP PE=3 SV=1
Length = 87
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR+G RPFY +VV S
Sbjct: 1 MSVKIRLARFGAKKRPFYRVVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ R+ + IE LG ++P+ + E V + ++R++YWL
Sbjct: 26 ------------RVARDGKFIESLGFYNPMLPKEHELFVKVKVDRLKYWLSVG 66
>sp|Q1GDC7|RS16_RUEST 30S ribosomal protein S16 OS=Ruegeria sp. (strain TM1040) GN=rpsP
PE=3 SV=1
Length = 121
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 47/110 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY IV S
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
RM R+ + IE+LGT++PL + E+ V ++IE+I+ WL
Sbjct: 26 ------------RMPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAWL 63
>sp|Q3YSX5|RS16_EHRCJ 30S ribosomal protein S16 OS=Ehrlichia canis (strain Jake) GN=rpsP
PE=3 SV=1
Length = 87
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR+G RPFY +VV S
Sbjct: 1 MSVKIRLARFGAKKRPFYRVVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ R+ + IE LG ++P+ + E V + ++R++YWL
Sbjct: 26 ------------RVSRDGKFIESLGFYNPMLPKEHELFVKVKVDRLKYWLSVG 66
>sp|Q6LMV7|RS16_PHOPR 30S ribosomal protein S16 OS=Photobacterium profundum GN=rpsP PE=3
SV=1
Length = 83
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 48/108 (44%)
Query: 46 SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
+IRLAR+G RPFY IVV S RC
Sbjct: 3 TIRLARHGAKKRPFYQIVVADS---------------------RCA-------------- 27
Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R+ + IE++G F+PL +E+L L+++R+ +W+G
Sbjct: 28 ------------RDGRNIEKIGFFNPLAKGQEERL-RLDLDRVNHWVG 62
>sp|Q28UE6|RS16_JANSC 30S ribosomal protein S16 OS=Jannaschia sp. (strain CCS1) GN=rpsP
PE=3 SV=1
Length = 130
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 47/110 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY IV S
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVASDS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
RM R+ + IE+LGT++PL + E V +++ER+++WL
Sbjct: 26 ------------RMPRDGRFIEKLGTYNPLLPKDSEDRVKMDMERVQHWL 63
>sp|A1AN03|RS16_PELPD 30S ribosomal protein S16 OS=Pelobacter propionicus (strain DSM
2379) GN=rpsP PE=3 SV=1
Length = 85
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 45/130 (34%), Gaps = 51/130 (39%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV
Sbjct: 1 MATKIRLARAGAKKRPFYQVVVADE----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSP 162
R RR+ + IE +GT+DP N + LN E+I WL + T
Sbjct: 26 ------------RSRRDGRFIENMGTYDPTKNPA---VFKLNEEKILAWL-SKGAQPTDT 69
Query: 163 VRELFGKLNI 172
VR+L K I
Sbjct: 70 VRQLLKKAGI 79
>sp|A4WNX7|RS16_RHOS5 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1
Length = 116
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 47/110 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RP Y IV S
Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
RM R+ + +E+LGT++PL + E + +N+ER++YWL
Sbjct: 26 ------------RMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWL 63
>sp|Q2GES3|RS16_NEOSM 30S ribosomal protein S16 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rpsP PE=3 SV=1
Length = 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 47/105 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR+G RP+Y IVV +SS
Sbjct: 10 IRLARFGRKKRPYYKIVVANSSSP------------------------------------ 33
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYW 151
R+ + +EQ+G++DPL ++ V L+IERIRYW
Sbjct: 34 -----------RDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRYW 67
>sp|A8GU56|RS16_RICRS 30S ribosomal protein S16 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpsP PE=3 SV=1
Length = 111
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV +++
Sbjct: 1 MAVKIRLARGGAKKRPFYRVVVANATAP-------------------------------- 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 ---------------RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|B0BVP5|RS16_RICRO 30S ribosomal protein S16 OS=Rickettsia rickettsii (strain Iowa)
GN=rpsP PE=3 SV=1
Length = 111
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV +++
Sbjct: 1 MAVKIRLARGGAKKRPFYRVVVANATAP-------------------------------- 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 ---------------RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|C4K2Y3|RS16_RICPU 30S ribosomal protein S16 OS=Rickettsia peacockii (strain Rustic)
GN=rpsP PE=3 SV=1
Length = 111
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV +++
Sbjct: 1 MAVKIRLARGGAKKRPFYRVVVANATAP-------------------------------- 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 ---------------RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|Q92FW8|RS16_RICCN 30S ribosomal protein S16 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsP PE=3 SV=1
Length = 111
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV +++
Sbjct: 1 MAVKIRLARGGAKKRPFYRVVVANATAP-------------------------------- 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 ---------------RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|C3PM20|RS16_RICAE 30S ribosomal protein S16 OS=Rickettsia africae (strain ESF-5)
GN=rpsP PE=3 SV=1
Length = 111
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV +++
Sbjct: 1 MAVKIRLARGGAKKRPFYRVVVANATAP-------------------------------- 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 ---------------RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|C1DBF8|RS16_LARHH 30S ribosomal protein S16 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpsP PE=3 SV=1
Length = 80
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 49/121 (40%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G NRPFY+IVV S
Sbjct: 4 IRLARGGAKNRPFYNIVVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
R RR+ + IE++G ++P+ E E+ + LN +R+ YW G ++ V +L
Sbjct: 25 --------RNRRDGRFIERVGFYNPVAAEGSER-IRLNSDRLAYWTGVG-AQVSDAVAKL 74
Query: 167 F 167
Sbjct: 75 L 75
>sp|Q3IZ02|RS16_RHOS4 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1
Length = 116
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 47/111 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RP Y IV S
Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
RM R+ + +E+LGT++PL + E + +N+ER++YWL
Sbjct: 26 ------------RMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLA 64
>sp|A3PN95|RS16_RHOS1 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1
Length = 116
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 47/111 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RP Y IV S
Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
RM R+ + +E+LGT++PL + E + +N+ER++YWL
Sbjct: 26 ------------RMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLA 64
>sp|Q2G8H4|RS16_NOVAD 30S ribosomal protein S16 OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=rpsP PE=3 SV=1
Length = 145
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 48/130 (36%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS S+RL+R G RP+Y IVV +S
Sbjct: 1 MSVSMRLSRGGSKKRPYYKIVVSNS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSP 162
R R+ + +EQ+GT++PL + E V L +R+RYW+G T
Sbjct: 26 ------------RAPRDGKYLEQVGTYNPLLAKDDENRVRLIEDRVRYWIGVG-AQPTDR 72
Query: 163 VRELFGKLNI 172
V + K I
Sbjct: 73 VARMLDKAGI 82
>sp|B1GZ23|RS16_UNCTG 30S ribosomal protein S16 OS=Uncultured termite group 1 bacterium
phylotype Rs-D17 GN=rpsP PE=3 SV=1
Length = 84
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 115 RMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R +R+ +PIE LG +DP+ + + K +NIERI YWLG
Sbjct: 26 RAKRDGEPIEILGQYDPIAEDNKFK---VNIERINYWLGIG 63
>sp|B8D7S9|RS16_BUCAT 30S ribosomal protein S16 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rpsP PE=3 SV=1
Length = 79
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 48/105 (45%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLARYG RPFY +VV S
Sbjct: 4 IRLARYGTKKRPFYKLVVADS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYW 151
R RN + IE+LG F+P+ E ++ LN+ERI +W
Sbjct: 25 --------RFSRNGRFIERLGYFNPIAKGKSE-ILKLNLERIEHW 60
>sp|P57474|RS16_BUCAI 30S ribosomal protein S16 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsP PE=3 SV=1
Length = 79
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 48/105 (45%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLARYG RPFY +VV S
Sbjct: 4 IRLARYGTKKRPFYKLVVADS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYW 151
R RN + IE+LG F+P+ E ++ LN+ERI +W
Sbjct: 25 --------RFSRNGRFIERLGYFNPIAKGKSE-ILKLNLERIEHW 60
>sp|B8D9H7|RS16_BUCA5 30S ribosomal protein S16 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rpsP PE=3 SV=1
Length = 79
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 48/105 (45%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLARYG RPFY +VV S
Sbjct: 4 IRLARYGTKKRPFYKLVVADS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYW 151
R RN + IE+LG F+P+ E ++ LN+ERI +W
Sbjct: 25 --------RFSRNGRFIERLGYFNPIAKGKSE-ILKLNLERIEHW 60
>sp|A1KSK1|RS16_NEIMF 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpsP PE=3
SV=1
Length = 81
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 48/107 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G +RPFY+++V S
Sbjct: 4 IRLARGGSKHRPFYNVIVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 25 --------RSRRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|P66438|RS16_NEIMB 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsP PE=3 SV=1
Length = 81
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 48/107 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G +RPFY+++V S
Sbjct: 4 IRLARGGSKHRPFYNVIVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 25 --------RSRRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|P66437|RS16_NEIMA 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpsP PE=3 SV=1
Length = 81
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 48/107 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G +RPFY+++V S
Sbjct: 4 IRLARGGSKHRPFYNVIVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 25 --------RSRRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|A9M2D3|RS16_NEIM0 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rpsP PE=3 SV=1
Length = 81
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 48/107 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G +RPFY+++V S
Sbjct: 4 IRLARGGSKHRPFYNVIVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 25 --------RSRRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|A5G0H0|RS16_ACICJ 30S ribosomal protein S16 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsP PE=3 SV=1
Length = 114
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 50/131 (38%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR G RPFYHIVV S
Sbjct: 1 MSLKIRLARAGAKKRPFYHIVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDP-LPNEYQEKLVSLNIERIRYWLGTSDIHITS 161
R R+ + IE++GT++P LP +++++ + L +R+ +WL + T
Sbjct: 26 ------------RSPRDGKFIERIGTYNPMLPADHEDR-IRLVTDRVTHWL-SQGAQATD 71
Query: 162 PVRELFGKLNI 172
V GK +
Sbjct: 72 RVARFIGKAGL 82
>sp|Q5GSA5|RS16_WOLTR 30S ribosomal protein S16 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rpsP PE=3 SV=1
Length = 106
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR+G RPFY IVV S
Sbjct: 1 MAVKIRLARFGAKKRPFYRIVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R R+ + IE++G +DP+ ++ + V + +R++YWL
Sbjct: 26 ------------RAPRDGRFIERIGQYDPMLSKDNKNCVVVKADRLKYWLNVG 66
>sp|A8F2Z8|RS16_RICM5 30S ribosomal protein S16 OS=Rickettsia massiliae (strain Mtu5)
GN=rpsP PE=3 SV=1
Length = 111
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
M+ IRLAR G RPFY +VV +++
Sbjct: 1 MAVKIRLARGGAKKRPFYRVVVANATAP-------------------------------- 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 ---------------RDGDFLEKVGTYDPMLALDNSERVVLKKDRIEYWLGTG 66
>sp|Q13DU2|RS16_RHOPS 30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rpsP PE=3 SV=1
Length = 107
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 47/111 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR G RPFYH+VV S
Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R R+ + IE+LG F+PL + E + L++++++ WL
Sbjct: 26 ------------RFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLA 64
>sp|C0QKU4|RS16_DESAH 30S ribosomal protein S16 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rpsP PE=3 SV=1
Length = 84
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 50/119 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR G +PFY IV +V+S
Sbjct: 1 MSVKIRLARRGAKKKPFYRIV--------------------------AADVESP------ 28
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITS 161
R+ + +E +GT+DP+ + + LN ERIRYW+G T+
Sbjct: 29 ---------------RDGKFLESVGTYDPM---VEPAAIILNEERIRYWMGEGATPTTT 69
>sp|B4RIW5|RS16_NEIG2 30S ribosomal protein S16 OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=rpsP PE=3 SV=1
Length = 81
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 48/107 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G +RPFY+++V S
Sbjct: 4 IRLARGGSKHRPFYNVIVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 25 --------RSRRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|Q5FA57|RS16_NEIG1 30S ribosomal protein S16 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rpsP PE=3 SV=1
Length = 81
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 48/107 (44%)
Query: 47 IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
IRLAR G +RPFY+++V S
Sbjct: 4 IRLARGGSKHRPFYNVIVTDS--------------------------------------- 24
Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 25 --------RSRRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|Q2GLR4|RS16_ANAPZ 30S ribosomal protein S16 OS=Anaplasma phagocytophilum (strain HZ)
GN=rpsP PE=3 SV=1
Length = 96
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 47/113 (41%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRL R G +PFY IVV S
Sbjct: 1 MSVKIRLMRLGAKKKPFYRIVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155
R++R+ + IEQ+G ++P+ + +N ER+ YWLG
Sbjct: 26 ------------RVQRDGKCIEQIGFYNPMVECGAPGFLKVNAERLGYWLGVG 66
>sp|B3Q856|RS16_RHOPT 30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rpsP PE=3 SV=1
Length = 106
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 47/111 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR G RPFYH+VV S
Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R R+ + IE+LG F+PL + E + L++++++ WL
Sbjct: 26 ------------RFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLA 64
>sp|P62236|RS16_RHOPA 30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=rpsP PE=1 SV=3
Length = 106
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 47/111 (42%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
MS IRLAR G RPFYH+VV S
Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADS----------------------------------- 25
Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
R R+ + IE+LG F+PL + E + L++++++ WL
Sbjct: 26 ------------RFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLA 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,253,254
Number of Sequences: 539616
Number of extensions: 2931423
Number of successful extensions: 7213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 6894
Number of HSP's gapped (non-prelim): 414
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)