Query psy11684
Match_columns 198
No_of_seqs 160 out of 1058
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 16:14:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3419|consensus 100.0 3.6E-40 7.8E-45 257.9 8.6 94 43-189 1-94 (112)
2 PRK14525 rpsP 30S ribosomal pr 100.0 1.9E-35 4.1E-40 221.4 9.5 80 43-173 1-80 (88)
3 TIGR00002 S16 ribosomal protei 100.0 1.5E-34 3.2E-39 211.7 8.8 77 45-172 1-77 (78)
4 CHL00005 rps16 ribosomal prote 100.0 3E-34 6.5E-39 212.5 8.5 76 44-172 1-76 (82)
5 PRK14524 rpsP 30S ribosomal pr 100.0 3.5E-34 7.7E-39 216.4 8.4 78 44-172 1-78 (94)
6 PRK00040 rpsP 30S ribosomal pr 100.0 3.1E-34 6.8E-39 208.7 7.8 75 44-167 1-75 (75)
7 PRK14520 rpsP 30S ribosomal pr 100.0 1.2E-33 2.6E-38 229.8 8.3 79 43-172 1-79 (155)
8 PRK14522 rpsP 30S ribosomal pr 100.0 1.9E-33 4.1E-38 220.6 8.6 75 43-169 1-75 (116)
9 PRK14521 rpsP 30S ribosomal pr 100.0 5.2E-33 1.1E-37 231.3 8.4 80 43-173 1-80 (186)
10 PRK14523 rpsP 30S ribosomal pr 100.0 9.5E-33 2.1E-37 221.6 8.4 82 44-174 1-82 (137)
11 COG0228 RpsP Ribosomal protein 100.0 3.2E-32 6.8E-37 205.2 7.7 78 44-171 1-78 (87)
12 PF00886 Ribosomal_S16: Riboso 99.9 5.1E-28 1.1E-32 169.5 5.5 62 51-160 1-62 (62)
13 TIGR02097 yccV hemimethylated 51.4 8.5 0.00018 29.8 1.3 23 41-67 36-58 (101)
14 PF02817 E3_binding: e3 bindin 50.8 13 0.00029 24.2 1.9 25 156-180 2-26 (39)
15 smart00874 B5 tRNA synthetase 48.5 29 0.00063 23.3 3.4 35 139-175 2-36 (71)
16 PF03484 B5: tRNA synthetase B 44.4 35 0.00075 23.6 3.4 36 139-176 2-37 (70)
17 PRK14129 heat shock protein Hs 43.7 16 0.00036 29.2 1.8 13 55-67 47-59 (105)
18 PF08755 YccV-like: Hemimethyl 37.2 22 0.00048 26.5 1.6 13 55-67 46-58 (100)
19 PF12261 T_hemolysin: Thermost 29.9 33 0.00072 28.7 1.6 31 159-189 124-154 (179)
20 PF01710 HTH_Tnp_IS630: Transp 24.9 49 0.0011 24.9 1.7 48 124-178 42-89 (119)
21 KOG0135|consensus 20.5 63 0.0014 32.7 1.8 36 118-155 169-204 (661)
22 PF11875 DUF3395: Domain of un 20.2 68 0.0015 25.8 1.7 13 45-57 53-65 (151)
No 1
>KOG3419|consensus
Probab=100.00 E-value=3.6e-40 Score=257.88 Aligned_cols=94 Identities=54% Similarity=0.999 Sum_probs=90.6
Q ss_pred ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP 122 (198)
Q Consensus 43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~ 122 (198)
|.++|||||+||||||||||||+++ |.+|+|++
T Consensus 1 ~~vkIRLar~GcknRPfY~Ivva~~-----------------------------------------------r~~rdgk~ 33 (112)
T KOG3419|consen 1 MVVKIRLARFGCKNRPFYRIVVADS-----------------------------------------------RKRRDGKP 33 (112)
T ss_pred CeEEEeehhcCccCCCeeEEEEeec-----------------------------------------------cccccCCc
Confidence 6789999999999999999999999 89999999
Q ss_pred ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcccCCCcccccCC
Q psy11684 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANS 189 (198)
Q Consensus 123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~~~P~~~~~~~ 189 (198)
|||||+|||+||.+++++|.||.+||+||||+| ||||+||.+||++ +|++|++|..++.+.
T Consensus 34 iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~G-AqpS~tv~~Ll~~-----aGl~p~~p~~~~~a~ 94 (112)
T KOG3419|consen 34 IEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVG-AQPSDTVEELLGK-----AGLFPIHPMTFMNAK 94 (112)
T ss_pred hhheecccCCCCCCCCcceeecHHHHHHHHhcC-CccChHHHHHHHh-----cCCCCCchhhhhccc
Confidence 999999999999999999999999999999999 9999999999999 999999999987653
No 2
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=100.00 E-value=1.9e-35 Score=221.39 Aligned_cols=80 Identities=30% Similarity=0.582 Sum_probs=75.9
Q ss_pred ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP 122 (198)
Q Consensus 43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~ 122 (198)
|+|+|||+|+||+|+|||||||+|+ |.+|||++
T Consensus 1 M~VkIRL~R~G~k~~P~YrIVv~ds-----------------------------------------------r~~RdGk~ 33 (88)
T PRK14525 1 MAVVLRLSRAGTHKAPFYHVVATDS-----------------------------------------------RNARDGKY 33 (88)
T ss_pred CcEEEehhhCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCCc
Confidence 8999999999999999999999999 99999999
Q ss_pred ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCc
Q psy11684 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNID 173 (198)
Q Consensus 123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~ 173 (198)
||+||+|||+.++ +.+.||.|||+|||++| ||||++|..||++.|+.
T Consensus 34 IE~lG~YnP~~~~---~~i~ln~eri~~WL~~G-AqpT~tV~~Ll~~~g~~ 80 (88)
T PRK14525 34 LEDVGIYDPTKRP---ERIELKVERIEHWLKAG-AKPSQTVAMILKRAAKA 80 (88)
T ss_pred eeEEecccCCCCC---ceEEEcHHHHHHHHHCC-CccCHHHHHHHHHcCcc
Confidence 9999999999753 57999999999999999 99999999999997665
No 3
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=100.00 E-value=1.5e-34 Score=211.69 Aligned_cols=77 Identities=48% Similarity=0.805 Sum_probs=73.0
Q ss_pred eEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccce
Q psy11684 45 KSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIE 124 (198)
Q Consensus 45 v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~IE 124 (198)
|+|||+|+||+|+|||+|||+|+ |.+|||++||
T Consensus 1 vkIRL~R~G~k~~PfYrIVv~d~-----------------------------------------------r~~RdGk~iE 33 (78)
T TIGR00002 1 VKIRLKRGGRKKRPFYRIVVADS-----------------------------------------------RSRRDGRYIE 33 (78)
T ss_pred CEEecccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCcee
Confidence 68999999999999999999999 9999999999
Q ss_pred ecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684 125 QLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172 (198)
Q Consensus 125 ~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I 172 (198)
+||+|||++++ +.+.||.||++|||+.| ||||++|.+||++.|+
T Consensus 34 ~lG~YnP~~~~---~~i~l~~~ri~~Wl~~G-Aqps~tV~~Ll~~~g~ 77 (78)
T TIGR00002 34 ELGFYNPLTKE---SRVKLNVERIKYWLSKG-AQPTDTVRNLLKKAGV 77 (78)
T ss_pred EeeeccCCCCC---cEEEEcHHHHHHHHHCC-CccCHHHHHHHHHccC
Confidence 99999999864 58999999999999999 9999999999999654
No 4
>CHL00005 rps16 ribosomal protein S16
Probab=100.00 E-value=3e-34 Score=212.46 Aligned_cols=76 Identities=32% Similarity=0.579 Sum_probs=71.8
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
+|+|||+|+||+|+|||||||+|+ |.+|||++|
T Consensus 1 ~vkIRL~R~G~kk~P~YrIVvads-----------------------------------------------r~~RdGk~i 33 (82)
T CHL00005 1 MVKLRLKRCGRKQQAVYRIVAIDV-----------------------------------------------RSRREGRDL 33 (82)
T ss_pred CeEEecccCCCCCCCeEEEEEEeC-----------------------------------------------CCCCCCcce
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I 172 (198)
|+||+|||++++ +.||.||++|||++| ||||++|.+||++.|+
T Consensus 34 E~lG~YnP~~~~-----~~ln~eri~~Wl~~G-Aqpt~tV~~Ll~~~g~ 76 (82)
T CHL00005 34 EKVGFYDPIKNQ-----TYLNVPAILYFLEKG-AQPTETVYDILKKAEV 76 (82)
T ss_pred eEeeeccCCCcc-----cEEeHHHHHHHHHCc-CccCHHHHHHHHHcCc
Confidence 999999999753 699999999999999 9999999999999664
No 5
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=100.00 E-value=3.5e-34 Score=216.41 Aligned_cols=78 Identities=35% Similarity=0.647 Sum_probs=73.9
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
+|+|||+|+||+|+|||||||+|+ |.+|||++|
T Consensus 1 mVkIRL~R~G~KkrPfYrIVvads-----------------------------------------------r~~RdGk~i 33 (94)
T PRK14524 1 MVRIRLTRMGKRKQPFYRIVVVDS-----------------------------------------------RKRRDGAYI 33 (94)
T ss_pred CcEEhhccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I 172 (198)
|+||+|||++++ ..+.||.||++|||++| ||||++|..||++.|+
T Consensus 34 E~lG~YnP~~~~---~~i~l~~eri~~Wl~~G-AqpT~tV~~Llkk~g~ 78 (94)
T PRK14524 34 ESLGYYNPLKEP---YEIKVDVERAVEWILKG-AQPSDTVRDILRKFGV 78 (94)
T ss_pred eEeeecCCCCCC---ceEEEcHHHHHHHHHcC-CccCHHHHHHHHHccc
Confidence 999999999764 47999999999999999 9999999999999665
No 6
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=100.00 E-value=3.1e-34 Score=208.74 Aligned_cols=75 Identities=45% Similarity=0.753 Sum_probs=71.1
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
+|+|||+|+||+|+|||||||+|+ |++|||++|
T Consensus 1 ~vkIRL~R~G~k~~P~YrIVv~d~-----------------------------------------------r~~RdGk~i 33 (75)
T PRK00040 1 MVKIRLARGGAKKRPFYRIVVADS-----------------------------------------------RSPRDGRFI 33 (75)
T ss_pred CeEEhhhhCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHH
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELF 167 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll 167 (198)
|+||+|||++++ +++.+.||.|||+|||++| ||||++|.+||
T Consensus 34 E~lG~ydP~~~~-~~~~i~ln~eri~~Wl~~G-Aqpt~~V~~Ll 75 (75)
T PRK00040 34 ERVGFYNPLAKP-AEEEVKLDEERVLYWLGQG-AQPTDTVRRLL 75 (75)
T ss_pred eEEeecCCCCCC-CcceEEEcHHHHHHHHHCC-CccCHHHHHhC
Confidence 999999999865 4679999999999999999 99999999986
No 7
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=100.00 E-value=1.2e-33 Score=229.80 Aligned_cols=79 Identities=34% Similarity=0.622 Sum_probs=75.6
Q ss_pred ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP 122 (198)
Q Consensus 43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~ 122 (198)
|+|+|||+|+||+|+|||||||+|+ |++|||++
T Consensus 1 MaVkIRL~R~G~kk~PfYrIVVaDs-----------------------------------------------R~~RDGk~ 33 (155)
T PRK14520 1 MAVKIKLKRLGKIRNPQYRIVVADS-----------------------------------------------RTKRDGRA 33 (155)
T ss_pred CcEEehhhhCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCCc
Confidence 8999999999999999999999999 99999999
Q ss_pred ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172 (198)
Q Consensus 123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I 172 (198)
||+||+|||++++ ..|.||.||++|||++| ||||++|..||++.|+
T Consensus 34 IE~lG~YnP~~~~---~~i~ln~eRi~yWL~~G-AQPT~~V~~LLk~~g~ 79 (155)
T PRK14520 34 IEEIGRYHPKEEP---SLIEIDSERAQYWLSVG-AQPTEPVLALLKITGD 79 (155)
T ss_pred eeeeeccCCCCCC---ceEEEcHHHHHHHHHCC-CccCHHHHHHHHHcch
Confidence 9999999998764 58999999999999999 9999999999999775
No 8
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=100.00 E-value=1.9e-33 Score=220.64 Aligned_cols=75 Identities=32% Similarity=0.514 Sum_probs=72.5
Q ss_pred ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP 122 (198)
Q Consensus 43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~ 122 (198)
|+|+|||+|+||+|+|||||||+|+ |.+|||++
T Consensus 1 MmVkIRLaR~G~KkrPfYrIVVaDs-----------------------------------------------R~~RDGk~ 33 (116)
T PRK14522 1 MALKIRLRQQGRRNHVVYRLVLADV-----------------------------------------------ESPRDGKY 33 (116)
T ss_pred CcEEEecccCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCCc
Confidence 8999999999999999999999999 99999999
Q ss_pred ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhc
Q psy11684 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGK 169 (198)
Q Consensus 123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k 169 (198)
||+||+|||+.++ .|.||.|||+|||+.| ||||++|..||++
T Consensus 34 IE~lG~YdP~~~~----~v~Ln~eRi~yWL~~G-AqPS~tV~~LLkk 75 (116)
T PRK14522 34 IELLGWYDPHSEQ----NYQLKSERIFYWLNQG-AELTEKAGALVKQ 75 (116)
T ss_pred ceeeeccCCCCCC----ceEECHHHHHHHHHCC-CccCHHHHHHHHh
Confidence 9999999998753 6999999999999999 9999999999998
No 9
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=99.98 E-value=5.2e-33 Score=231.28 Aligned_cols=80 Identities=35% Similarity=0.582 Sum_probs=75.5
Q ss_pred ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP 122 (198)
Q Consensus 43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~ 122 (198)
|+|+|||+|+||+++|||||||+|+ |++|||++
T Consensus 1 M~VkIRL~R~G~KkrPfYrIVVaDs-----------------------------------------------R~~RDGk~ 33 (186)
T PRK14521 1 MAVKIRLQRHGRKGKAFYWIVAADS-----------------------------------------------RAPRDGKF 33 (186)
T ss_pred CcEeehhhhCCCCCCCeEEEEEEeC-----------------------------------------------CCCCCCCc
Confidence 8999999999999999999999999 99999999
Q ss_pred ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCc
Q psy11684 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNID 173 (198)
Q Consensus 123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~ 173 (198)
||+||+|||++++ ..|.||++||+|||++| ||||++|+.||++.|+-
T Consensus 34 IE~lG~YnP~~~~---~~i~Ln~eRi~~WL~~G-AqPTdtV~~lL~~~g~~ 80 (186)
T PRK14521 34 IEKIGTYNPNTNP---ATVDLNFDRAVYWLMNG-AQPTDTARNILSYEGVL 80 (186)
T ss_pred eeeeeecCCCCCC---ceEEEcHHHHHHHHHCC-CcCCHHHHHHHHHcccc
Confidence 9999999999765 58999999999999999 99999999999995443
No 10
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=99.98 E-value=9.5e-33 Score=221.62 Aligned_cols=82 Identities=35% Similarity=0.577 Sum_probs=76.4
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
+|+|||+|+||+|+|||||||+|+ |++|||++|
T Consensus 1 mVkIRL~R~GrKkrPfYRIVVaDs-----------------------------------------------Rs~RDGK~I 33 (137)
T PRK14523 1 MVVIRLARGGSKKNPFYHIVVADR-----------------------------------------------RKPRDGRFI 33 (137)
T ss_pred CcEehhhcCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCcc
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDL 174 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~ 174 (198)
|+||+|||++++. ++.|.||++||+|||++| ||||++|..||++.|+..
T Consensus 34 E~LG~YdP~~~~~-~~~i~Ln~eRi~yWL~~G-AQPS~tV~~LLkkag~~~ 82 (137)
T PRK14523 34 ERVGYYNPMARGQ-DIRLQLEKERISHWLNQG-AQTSLRVKHLIKKLEKSP 82 (137)
T ss_pred eeeeecCCCCCCC-CceEEECHHHHHHHHHCC-CccCHHHHHHHHHcccch
Confidence 9999999998765 358999999999999999 999999999999976554
No 11
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.2e-32 Score=205.24 Aligned_cols=78 Identities=46% Similarity=0.711 Sum_probs=73.8
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
+|+|||+|+|.+++|||+|||+|| |.+|||++|
T Consensus 1 ~vkIRL~R~G~kk~P~YrIVVaDs-----------------------------------------------rs~RDGr~I 33 (87)
T COG0228 1 MVKIRLARGGSKKRPFYRIVVADS-----------------------------------------------RSPRDGRFI 33 (87)
T ss_pred CeEEehhhCCCccCCeEEEEEecc-----------------------------------------------CCCCCCcch
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccC
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLN 171 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~ 171 (198)
|.||+|||+. ..+..|.||.|||.|||++| |||||+|+.||.+.|
T Consensus 34 E~lG~ynP~~--~~~~~v~l~~eri~~Wl~~G-AqpSdtV~~ll~~~g 78 (87)
T COG0228 34 ERLGTYNPLL--GKEERVKLDEERILYWLSQG-AQPSDTVRRLLKKAG 78 (87)
T ss_pred hhhcccCCCC--CccceEEEcHHHHHHHHHcC-CcccHHHHHHHHHhh
Confidence 9999999977 44668999999999999999 999999999999965
No 12
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=99.94 E-value=5.1e-28 Score=169.51 Aligned_cols=62 Identities=50% Similarity=0.883 Sum_probs=60.3
Q ss_pred ccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccceecceec
Q psy11684 51 RYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFD 130 (198)
Q Consensus 51 R~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~IE~LGtyD 130 (198)
|+||+|+|||||||+|+ |++|||++||+||+||
T Consensus 1 R~G~k~~P~YrIVv~d~-----------------------------------------------r~~RdGk~iE~lG~Yd 33 (62)
T PF00886_consen 1 RMGRKKRPFYRIVVADS-----------------------------------------------RSPRDGKFIEELGFYD 33 (62)
T ss_dssp EESSTTEEEEEEEEEET-----------------------------------------------TSSTTSSESEEEEEEE
T ss_pred CCCCCCCCeEEEEEEeC-----------------------------------------------CcccccchhhccceEc
Confidence 78999999999999999 9999999999999999
Q ss_pred CCCCCCCcceEEEeHHHHHHHHhCCCcccC
Q psy11684 131 PLPNEYQEKLVSLNIERIRYWLGTSDIHIT 160 (198)
Q Consensus 131 Plpn~~~eK~v~LnieRiryWLg~G~A~pT 160 (198)
|++++..++.+.||+|||+|||++| ||||
T Consensus 34 P~~~~~~~~~~~l~~eri~~Wl~~G-AqpT 62 (62)
T PF00886_consen 34 PIPNPDEEKQIKLNFERIKYWLSKG-AQPT 62 (62)
T ss_dssp TTSSSSSSTSEEETHHHHHHHHHTT-EEEE
T ss_pred CCCCCCCceeEEeCHHHHHHHHHcC-cCCC
Confidence 9999888899999999999999999 9997
No 13
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=51.44 E-value=8.5 Score=29.83 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=16.4
Q ss_pred ccceeEEEeeccCCCCCCeeEEEEecc
Q psy11684 41 EGMSKSIRLARYGCTNRPFYHIVVIHS 67 (198)
Q Consensus 41 ~~M~v~IRLaR~G~~nrPfY~IVV~~s 67 (198)
+.|.+..|-. +++||||++|-+.
T Consensus 36 ~~~~~~~~p~----~~qPfYhvLv~~~ 58 (101)
T TIGR02097 36 DAIPVEIRPL----RDQPFYHVLAEDD 58 (101)
T ss_pred HhhhcccCcc----cCCCceEEEEeCC
Confidence 4455544333 8999999998887
No 14
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=50.78 E-value=13 Score=24.21 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.9
Q ss_pred CcccCHHHHHHHhccCCccCCcccC
Q psy11684 156 DIHITSPVRELFGKLNIDLTNLCDL 180 (198)
Q Consensus 156 ~A~pT~~V~~Ll~k~~I~~~~l~~~ 180 (198)
.+..|+.+++|....|||+..+-.-
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gt 26 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGT 26 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSS
T ss_pred CcccCHHHHHHHHHcCCCccccccc
Confidence 4678999999999999999866543
No 15
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=48.53 E-value=29 Score=23.26 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=29.2
Q ss_pred ceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccC
Q psy11684 139 KLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLT 175 (198)
Q Consensus 139 K~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~ 175 (198)
+.+.++.+++.-.||.. .. .+.+.++|.++|.+..
T Consensus 2 ~~i~~~~~~i~~llG~~-i~-~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 2 RTITLRRERINRLLGLD-LS-AEEIEEILKRLGFEVE 36 (71)
T ss_pred cEEEecHHHHHHHHCCC-CC-HHHHHHHHHHCCCeEE
Confidence 35899999999999986 44 4679999999998764
No 16
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=44.45 E-value=35 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=28.2
Q ss_pred ceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCC
Q psy11684 139 KLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTN 176 (198)
Q Consensus 139 K~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~ 176 (198)
+.+.++.+++.-.||.. -..+.+.++|+++|.....
T Consensus 2 ~~i~~~~~~i~~~lG~~--i~~~~i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 2 KKITLSLDKINKLLGID--ISPEEIIKILKRLGFKVEK 37 (70)
T ss_dssp EEEEEEHHHHHHHHTS-----HHHHHHHHHHTT-EEEE
T ss_pred eEEEecHHHHHHHhCCC--CCHHHHHHHHHHCCCEEEE
Confidence 56899999999999985 4557899999999987665
No 17
>PRK14129 heat shock protein HspQ; Provisional
Probab=43.73 E-value=16 Score=29.17 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.4
Q ss_pred CCCCeeEEEEecc
Q psy11684 55 TNRPFYHIVVIHS 67 (198)
Q Consensus 55 ~nrPfY~IVV~~s 67 (198)
+++||||++|-+.
T Consensus 47 kdqPwYHvl~en~ 59 (105)
T PRK14129 47 RAAPWYHVVMEDD 59 (105)
T ss_pred cCCCceEEEEEcC
Confidence 6999999999665
No 18
>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.
Probab=37.22 E-value=22 Score=26.53 Aligned_cols=13 Identities=46% Similarity=0.979 Sum_probs=7.2
Q ss_pred CCCCeeEEEEecc
Q psy11684 55 TNRPFYHIVVIHS 67 (198)
Q Consensus 55 ~nrPfY~IVV~~s 67 (198)
+++|||+|.|-+.
T Consensus 46 ~~qPfY~vLv~~~ 58 (100)
T PF08755_consen 46 RNQPFYHVLVDDR 58 (100)
T ss_dssp ----EEEEEEE-S
T ss_pred CCCCcEEEEEecC
Confidence 8999999988876
No 19
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=29.85 E-value=33 Score=28.70 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.1
Q ss_pred cCHHHHHHHhccCCccCCcccCCCcccccCC
Q psy11684 159 ITSPVRELFGKLNIDLTNLCDLRPSQWLANS 189 (198)
Q Consensus 159 pT~~V~~Ll~k~~I~~~~l~~~~P~~~~~~~ 189 (198)
-|++|+.+|.++||++.-|.+-.|+.-....
T Consensus 124 aT~~lr~~~~rlgl~~~~La~Ad~~rl~~~~ 154 (179)
T PF12261_consen 124 ATRQLRNLFRRLGLPPTVLADADPSRLGDDR 154 (179)
T ss_pred CCHHHHHHHHHcCCCceeccccCHhHcCcCh
Confidence 4999999999999999999998887654433
No 20
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.90 E-value=49 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.400 Sum_probs=34.5
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcc
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLC 178 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~ 178 (198)
++.|.+.|-+.... .+|.+.++-++.. +|.-+..||...+||....++
T Consensus 42 ~~~G~~~~k~r~~~----Kid~~~L~~~v~~---~pd~tl~Ela~~l~Vs~~ti~ 89 (119)
T PF01710_consen 42 KETGDLEPKPRGRK----KIDRDELKALVEE---NPDATLRELAERLGVSPSTIW 89 (119)
T ss_pred cccccccccccccc----cccHHHHHHHHHH---CCCcCHHHHHHHcCCCHHHHH
Confidence 34566677665432 6789999999875 578888888888888666554
No 21
>KOG0135|consensus
Probab=20.46 E-value=63 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.641 Sum_probs=27.1
Q ss_pred CCCccceecceecCCCCCCCcceEEEeHHHHHHHHhCC
Q psy11684 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 155 (198)
Q Consensus 118 R~gk~IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G 155 (198)
-|-+-||..-||||...|.- .=.=|.+-++||+|.-
T Consensus 169 SNt~~I~TtatyDP~t~EfV--inTP~~~A~K~WiGn~ 204 (661)
T KOG0135|consen 169 SNTKGIQTTATYDPTTEEFV--INTPDFSAIKCWIGNA 204 (661)
T ss_pred ccccceeeeeeecCCCCeeE--ecCCcHHHHHHHhccc
Confidence 36788999999999887641 0123679999999865
No 22
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=20.22 E-value=68 Score=25.78 Aligned_cols=13 Identities=31% Similarity=0.187 Sum_probs=10.5
Q ss_pred eEEEeeccCCCCC
Q psy11684 45 KSIRLARYGCTNR 57 (198)
Q Consensus 45 v~IRLaR~G~~nr 57 (198)
.-|-.|.||+..-
T Consensus 53 LVI~~A~YG~~~~ 65 (151)
T PF11875_consen 53 LVILKAWYGNLPA 65 (151)
T ss_pred eEEEEEEcCCccc
Confidence 5688899998766
Done!