Query psy11684
Match_columns 198
No_of_seqs 160 out of 1058
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 16:14:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_P 30S ribosomal protein S 100.0 2.9E-36 9.9E-41 222.1 7.5 79 44-171 1-79 (82)
2 3pys_P 30S ribosomal protein S 100.0 1E-36 3.5E-41 224.9 3.8 80 44-173 1-80 (83)
3 3bn0_A 30S ribosomal protein S 100.0 2.2E-35 7.6E-40 228.5 6.3 82 43-181 1-82 (112)
4 3bbn_P Ribosomal protein S16; 100.0 1.6E-35 5.5E-40 220.7 -3.4 83 44-184 1-83 (88)
5 1vbv_A Hypothetical protein B0 45.0 9.4 0.00032 28.2 1.7 14 54-67 46-59 (105)
6 2eq9_C Pyruvate dehydrogenase 29.0 33 0.0011 20.4 2.0 23 158-180 2-24 (41)
7 2eq7_C 2-oxoglutarate dehydrog 27.0 40 0.0014 19.9 2.2 22 159-180 2-23 (40)
8 3rnm_E Lipoamide acyltransfera 25.3 37 0.0013 22.7 2.0 23 157-179 8-30 (58)
9 2eq8_C Pyruvate dehydrogenase 22.4 42 0.0014 19.8 1.6 21 159-179 2-22 (40)
10 3dxo_A Uncharacterized snoal-l 20.8 33 0.0011 23.7 1.0 17 118-134 105-121 (121)
11 1w85_I Dihydrolipoyllysine-res 20.5 68 0.0023 19.9 2.4 23 157-179 7-29 (49)
No 1
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=100.00 E-value=2.9e-36 Score=222.12 Aligned_cols=79 Identities=41% Similarity=0.709 Sum_probs=74.4
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
||+|||+|+||+++|||||||+|+ |++|||++|
T Consensus 1 mvkIRL~R~G~kk~PfYrIVvads-----------------------------------------------r~~RdGr~I 33 (82)
T 3r8n_P 1 MVTIRLARHGAKKRPFYQVVVADS-----------------------------------------------RNARNGRFI 33 (82)
T ss_dssp CEEEEEEECSCTTSCCEEEEEEET-----------------------------------------------TSCTTSCEE
T ss_pred CcEEhhhcCCCCCCCEEEEEEeec-----------------------------------------------CCCCCCCce
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccC
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLN 171 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~ 171 (198)
|+||+|||++++. ++.|.||.|||+|||++| ||||++|++||++.+
T Consensus 34 E~lG~YnP~~~~~-~~~v~l~~eri~~Wl~~G-AqptdtV~~Ll~~a~ 79 (82)
T 3r8n_P 34 ERVGFFNPIASEK-EEGTRLDLDRIAHWVGQG-ATISDRVAALIKEVN 79 (82)
T ss_dssp EEEEEECTTCCSS-SCCCCCCHHHHHHHHHHT-CEECHHHHHHHTTSC
T ss_pred eeeeEEcCCCCCC-cceEEEcHHHHHHHHHCC-CccCHHHHHHHHhhh
Confidence 9999999999875 347999999999999999 999999999999864
No 2
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=100.00 E-value=1e-36 Score=224.95 Aligned_cols=80 Identities=34% Similarity=0.659 Sum_probs=75.1
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
||+|||+|+||+++|||||||+|| |++|||++|
T Consensus 1 MvkIRL~R~G~kkrPfYrIVvads-----------------------------------------------r~~RdGr~I 33 (83)
T 3pys_P 1 MVKIRLARFGSKHNPHYRIVVTDA-----------------------------------------------RRKRDGKYI 33 (83)
T ss_dssp CEEEECCCCSSTTCCCCCCEEEES-----------------------------------------------SSCTTCCCS
T ss_pred CcEEeeecCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence 389999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCc
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNID 173 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~ 173 (198)
|+||+|||++++ ++.|.||.|||+|||++| ||||++|++||++.|+-
T Consensus 34 E~lG~YnP~~~~--~~~i~l~~eri~~Wl~~G-AqptdtV~~ll~~~g~~ 80 (83)
T 3pys_P 34 EKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVF 80 (83)
T ss_dssp EECCCBCSSCCS--TTCBCCCHHHHHHHHHTC-CCBCSTTGGGTGGGCSS
T ss_pred eeeeEEcCCCCC--CceEEEchHHHHHHHHCC-CcCCHHHHHHHHHcCcc
Confidence 999999999964 678999999999999999 99999999999996653
No 3
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=100.00 E-value=2.2e-35 Score=228.53 Aligned_cols=82 Identities=26% Similarity=0.564 Sum_probs=69.8
Q ss_pred ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684 43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP 122 (198)
Q Consensus 43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~ 122 (198)
|+|+|||+|+||+++|||||||+|| |++|||++
T Consensus 1 M~VkIRL~R~G~KkrPfYrIVVaDs-----------------------------------------------R~~RDGr~ 33 (112)
T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDA-----------------------------------------------KSPREGKY 33 (112)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEC-----------------------------------------------C------C
T ss_pred CcEEehhhcCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCC
Confidence 8999999999999999999999999 99999999
Q ss_pred ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcccCC
Q psy11684 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLR 181 (198)
Q Consensus 123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~~~ 181 (198)
||+||+|||+ +++.|.||.|||+|||++| ||||++|++||++ +|+++..
T Consensus 34 IE~lG~YnP~----~~~~v~ld~eri~~WL~~G-AQPTdtV~~LL~~-----ag~~~~~ 82 (112)
T 3bn0_A 34 IDILGTYDPK----RKVLINVYPEKVKEWVLKG-VELSHRAKAILWN-----HGILKEV 82 (112)
T ss_dssp SEEEEEEETT----TTEEEEECHHHHHHHHHTT-CEEEHHHHHHHHH-----TTHHHHH
T ss_pred EeEeeeccCC----CcceEEEcHHHHHHHHHcC-CccCHHHHHHHHH-----cCCcccc
Confidence 9999999999 3579999999999999999 9999999999999 5555543
No 4
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.6e-35 Score=220.70 Aligned_cols=83 Identities=25% Similarity=0.447 Sum_probs=75.5
Q ss_pred eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684 44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI 123 (198)
Q Consensus 44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I 123 (198)
+|+|||+|+||+++|||||||+|| |++|||++|
T Consensus 1 mvkIRL~R~G~KkrPfYrIVvads-----------------------------------------------r~~RDGr~I 33 (88)
T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDV-----------------------------------------------RSRREGRDL 33 (88)
T ss_dssp CEEECCCCCSCTTCCCCCCCCEET-----------------------------------------------TSCSSSCCS
T ss_pred CeEEecccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCcE
Confidence 489999999999999999999999 999999999
Q ss_pred eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcccCCCcc
Q psy11684 124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQ 184 (198)
Q Consensus 124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~~~P~~ 184 (198)
|+||+|||++++ +.||.|||+|||++| ||||++|++||++ +|+++..+..
T Consensus 34 E~lG~YnP~~~~-----~~l~~eri~~Wl~~G-AqpTdtV~~ll~~-----~g~~~~~~~~ 83 (88)
T 3bbn_P 34 QKVGFYDPIKSQ-----TYLNVPAILDFLEKG-AQPTETVYDILKR-----AEVFKEFRLN 83 (88)
T ss_dssp SCCCCBCTTSSC-----BCCCTTTSSSSTTSS-CEECTTTSSSSTT-----TTSSSCC---
T ss_pred eEEEeccCCCCc-----eEEcHHHHHHHHHcC-CccCHHHHHHHHH-----cCCccccccc
Confidence 999999999875 689999999999999 9999999999999 6777776643
No 5
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=44.99 E-value=9.4 Score=28.25 Aligned_cols=14 Identities=29% Similarity=0.683 Sum_probs=10.1
Q ss_pred CCCCCeeEEEEecc
Q psy11684 54 CTNRPFYHIVVIHS 67 (198)
Q Consensus 54 ~~nrPfY~IVV~~s 67 (198)
.+++|||||+|-+.
T Consensus 46 ~~~QPfYhVL~e~~ 59 (105)
T 1vbv_A 46 LRAAPWYHVVMEDD 59 (105)
T ss_dssp --CCCEEEEEEECS
T ss_pred cCCCCceEEEEeCC
Confidence 48999999887654
No 6
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=29.03 E-value=33 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.8
Q ss_pred ccCHHHHHHHhccCCccCCcccC
Q psy11684 158 HITSPVRELFGKLNIDLTNLCDL 180 (198)
Q Consensus 158 ~pT~~V~~Ll~k~~I~~~~l~~~ 180 (198)
.+|+.+++|....|||+..+-.-
T Consensus 2 ~asP~ar~la~e~gidl~~v~gt 24 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGS 24 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCC
T ss_pred CCChHHHHHHHHcCCChhhcCCC
Confidence 35889999999999998876543
No 7
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=26.96 E-value=40 Score=19.93 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=18.3
Q ss_pred cCHHHHHHHhccCCccCCcccC
Q psy11684 159 ITSPVRELFGKLNIDLTNLCDL 180 (198)
Q Consensus 159 pT~~V~~Ll~k~~I~~~~l~~~ 180 (198)
+|+.|++|....|||+..+-.-
T Consensus 2 asP~ar~la~e~gidl~~v~gt 23 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGT 23 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCC
T ss_pred CCcHHHHHHHHhCCChhhcCCC
Confidence 4789999999999999876543
No 8
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=25.27 E-value=37 Score=22.72 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.6
Q ss_pred cccCHHHHHHHhccCCccCCccc
Q psy11684 157 IHITSPVRELFGKLNIDLTNLCD 179 (198)
Q Consensus 157 A~pT~~V~~Ll~k~~I~~~~l~~ 179 (198)
+..|+.|++|...+|||++.+-.
T Consensus 8 v~aSPaaRrlA~e~gIdl~~V~G 30 (58)
T 3rnm_E 8 TLATPAVRNLAMENNIKLSEVVG 30 (58)
T ss_dssp CCCCHHHHHHHHHTTCCGGGCCC
T ss_pred cCcCHHHHHHHHHcCCCHHHCCC
Confidence 56789999999999999987743
No 9
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=22.44 E-value=42 Score=19.84 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.8
Q ss_pred cCHHHHHHHhccCCccCCccc
Q psy11684 159 ITSPVRELFGKLNIDLTNLCD 179 (198)
Q Consensus 159 pT~~V~~Ll~k~~I~~~~l~~ 179 (198)
+|+.|++|....|||++.+-.
T Consensus 2 asP~ar~la~e~gidl~~v~g 22 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRG 22 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCC
T ss_pred CChHHHHHHHHhCCChhhcCC
Confidence 478999999999999887654
No 10
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=20.83 E-value=33 Score=23.66 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=12.9
Q ss_pred CCCccceecceecCCCC
Q psy11684 118 RNDQPIEQLGTFDPLPN 134 (198)
Q Consensus 118 R~gk~IE~LGtyDPlpn 134 (198)
-||+..+..|++||+|.
T Consensus 105 ~dGrI~~~~~f~d~~p~ 121 (121)
T 3dxo_A 105 TEGRIDNVVGFLDGAVS 121 (121)
T ss_dssp TTSSEEEEEEEEEC---
T ss_pred CCCCEEEEEEecCCCCC
Confidence 38999999999999983
No 11
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=20.52 E-value=68 Score=19.94 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.4
Q ss_pred cccCHHHHHHHhccCCccCCccc
Q psy11684 157 IHITSPVRELFGKLNIDLTNLCD 179 (198)
Q Consensus 157 A~pT~~V~~Ll~k~~I~~~~l~~ 179 (198)
..+|+.|++|...+|||+..+-.
T Consensus 7 ~~asP~ar~la~e~gidl~~v~g 29 (49)
T 1w85_I 7 VIAMPSVRKYAREKGVDIRLVQG 29 (49)
T ss_dssp CCCCHHHHHHHHHTTCCTTTSCC
T ss_pred ccCChHHHHHHHHcCCCccccCC
Confidence 45799999999999999887654
Done!