Your job contains 1 sequence.
>psy11684
MCCKVLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFY
HIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRND
QPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDL
RPSQWLANSNFWFNSQQV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11684
(198 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033907 - symbol:mRpS16 "mitochondrial ribosomal p... 169 6.0e-22 2
WB|WBGene00018961 - symbol:mrps-16 species:6239 "Caenorha... 157 1.7e-18 2
UNIPROTKB|J9NS54 - symbol:MRPS16 "Uncharacterized protein... 149 3.4e-18 2
UNIPROTKB|P82915 - symbol:MRPS16 "28S ribosomal protein S... 147 7.0e-18 2
UNIPROTKB|F1SU70 - symbol:LOC100739849 "Uncharacterized p... 147 7.0e-18 2
UNIPROTKB|A6ND22 - symbol:MRPS16 "28S ribosomal protein S... 146 8.9e-18 2
UNIPROTKB|Q9Y3D3 - symbol:MRPS16 "28S ribosomal protein S... 146 8.9e-18 2
MGI|MGI:1913492 - symbol:Mrps16 "mitochondrial ribosomal ... 146 8.9e-18 2
RGD|1582995 - symbol:Mrps16 "mitochondrial ribosomal prot... 138 6.0e-17 2
UNIPROTKB|E1C907 - symbol:MRPS16 "Uncharacterized protein... 126 4.5e-15 2
ZFIN|ZDB-GENE-041010-123 - symbol:mrps16 "mitochondrial r... 132 3.0e-14 2
UNIPROTKB|B4E032 - symbol:MRPS16 "cDNA FLJ58442, highly s... 158 1.3e-11 1
POMBASE|SPBC354.06 - symbol:mrps16 "mitochondrial ribosom... 89 7.7e-11 2
TAIR|locus:2139624 - symbol:SSR16 "small subunit ribosoma... 87 4.4e-10 2
UNIPROTKB|F1PT11 - symbol:F1PT11 "Uncharacterized protein... 96 6.3e-10 2
TIGR_CMR|SPO_3253 - symbol:SPO_3253 "ribosomal protein S1... 95 1.1e-09 2
TIGR_CMR|ECH_0192 - symbol:ECH_0192 "ribosomal protein S1... 80 3.6e-09 2
TIGR_CMR|NSE_0123 - symbol:NSE_0123 "ribosomal protein S1... 82 1.1e-08 2
UNIPROTKB|P0A7T3 - symbol:rpsP "30S ribosomal subunit pro... 78 3.3e-08 2
TIGR_CMR|APH_0054 - symbol:APH_0054 "ribosomal protein S1... 76 1.4e-07 2
TIGR_CMR|CPS_4069 - symbol:CPS_4069 "ribosomal protein S1... 69 1.1e-06 2
TIGR_CMR|SO_1357 - symbol:SO_1357 "ribosomal protein S16"... 65 2.5e-06 2
UNIPROTKB|Q9KUG0 - symbol:rpsP "30S ribosomal protein S16... 74 2.5e-06 2
TIGR_CMR|VC_0561 - symbol:VC_0561 "ribosomal protein S16"... 74 2.5e-06 2
TIGR_CMR|CHY_1433 - symbol:CHY_1433 "ribosomal protein S1... 62 1.1e-05 2
ASPGD|ASPL0000067200 - symbol:AN7701 species:162425 "Emer... 73 1.6e-05 2
TIGR_CMR|BA_3982 - symbol:BA_3982 "ribosomal protein S16"... 63 0.00032 2
SGD|S000005934 - symbol:MRPS16 "Mitochondrial ribosomal p... 70 0.00059 2
>FB|FBgn0033907 [details] [associations]
symbol:mRpS16 "mitochondrial ribosomal protein S16"
species:7227 "Drosophila melanogaster" [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS;NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS;NAS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:AE013599 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
CTD:51021 GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AY119210
RefSeq:NP_523737.1 UniGene:Dm.2747 ProteinModelPortal:Q9V6Y3
SMR:Q9V6Y3 STRING:Q9V6Y3 PaxDb:Q9V6Y3 PRIDE:Q9V6Y3
EnsemblMetazoa:FBtr0087578 EnsemblMetazoa:FBtr0310367
EnsemblMetazoa:FBtr0310368 GeneID:36570 KEGG:dme:Dmel_CG8338
FlyBase:FBgn0033907 InParanoid:Q9V6Y3 OrthoDB:EOG4GXD48
PhylomeDB:Q9V6Y3 GenomeRNAi:36570 NextBio:799259 Bgee:Q9V6Y3
GermOnline:CG8338 Uniprot:Q9V6Y3
Length = 129
Score = 169 (64.5 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 115 RMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R + QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG H+++P EL G
Sbjct: 40 RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRYWLGKG-AHLSTPAAELLG 93
Score = 101 (40.6 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 32 PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVI 65
PASG + +K IR R GCTNRPFYHIVV+
Sbjct: 5 PASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVM 38
>WB|WBGene00018961 [details] [associations]
symbol:mrps-16 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 GO:GO:0005739
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:FO081078 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 PIR:T30112
RefSeq:NP_001022207.1 ProteinModelPortal:Q10129 SMR:Q10129
STRING:Q10129 PaxDb:Q10129 PRIDE:Q10129 EnsemblMetazoa:F56D1.3.1
EnsemblMetazoa:F56D1.3.2 GeneID:3565469 KEGG:cel:CELE_F56D1.3
UCSC:F56D1.3.1 CTD:3565469 WormBase:F56D1.3 eggNOG:NOG243012
InParanoid:Q10129 OMA:GGHLTIH NextBio:956615 Uniprot:Q10129
Length = 147
Score = 157 (60.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRP 182
+EQ+GTFDPLPN+ EKLV+LN R++YW+G + HI+ PV EL G L+ L + P
Sbjct: 47 LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLG-----LSGLFPIHP 101
Query: 183 SQWL-ANSN 190
++ A N
Sbjct: 102 KSFIRAKDN 110
Score = 80 (33.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 46 SIRLARYGCTNRPFYHIVV 64
SI LA +GCTNRPFYH+ V
Sbjct: 14 SIGLALFGCTNRPFYHVCV 32
>UNIPROTKB|J9NS54 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
GeneTree:ENSGT00390000014309 EMBL:AAEX03002830
Ensembl:ENSCAFT00000049758 Uniprot:J9NS54
Length = 199
Score = 149 (57.5 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DPLPN + EK+V+LN+ERIR+W+G H++ PV L G
Sbjct: 107 RDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIGCG-AHLSKPVERLLG 156
Score = 85 (35.0 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
K G +IRLA GCTNRPFY IV H+
Sbjct: 74 KAYHGGHLTIRLALSGCTNRPFYRIVAAHN 103
>UNIPROTKB|P82915 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9913 "Bos taurus" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
EMBL:BC118470 IPI:IPI00699568 RefSeq:NP_001068942.1
UniGene:Bt.88967 ProteinModelPortal:P82915 IntAct:P82915
STRING:P82915 PRIDE:P82915 Ensembl:ENSBTAT00000001255 GeneID:510899
KEGG:bta:510899 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 InParanoid:P82915 OMA:YNKRARD OrthoDB:EOG4D7Z73
NextBio:20869667 Uniprot:P82915
Length = 135
Score = 147 (56.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 25/51 (49%), Positives = 40/51 (78%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G H++ PV +L G
Sbjct: 43 RDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCG-AHLSKPVEKLLG 92
Score = 84 (34.6 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYRGGHLTIRLALGGCTNRPFYRIVAAHN 39
>UNIPROTKB|F1SU70 [details] [associations]
symbol:LOC100739849 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:YNKRARD EMBL:CU639423 EMBL:FP476096 RefSeq:XP_003133122.1
RefSeq:XP_003483547.1 Ensembl:ENSSSCT00000011270
Ensembl:ENSSSCT00000024853 GeneID:100516466 GeneID:100739849
KEGG:ssc:100516466 KEGG:ssc:100739849 Uniprot:F1SU70
Length = 135
Score = 147 (56.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DPLPN + EKLV+LN +RIR+W+G H++ PV +L G
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIGCG-AHLSKPVEKLLG 92
Score = 84 (34.6 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
+ G +IRLA GCTNRPFY IV HS
Sbjct: 10 RAYRGGHLTIRLALGGCTNRPFYRIVAAHS 39
>UNIPROTKB|A6ND22 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
IPI:IPI00643459 ProteinModelPortal:A6ND22 SMR:A6ND22 STRING:A6ND22
PRIDE:A6ND22 Ensembl:ENST00000372940 ArrayExpress:A6ND22
Bgee:A6ND22 Uniprot:A6ND22
Length = 99
Score = 146 (56.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 25/51 (49%), Positives = 40/51 (78%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L G
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92
Score = 84 (34.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYRGGHLTIRLALGGCTNRPFYRIVAAHN 39
>UNIPROTKB|Q9Y3D3 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 GermOnline:ENSG00000182180 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 CTD:51021
HOVERGEN:HBG017758 OrthoDB:EOG4D7Z73 EMBL:AF151890 EMBL:AB049948
EMBL:BC021106 EMBL:AB051351 IPI:IPI00032872 RefSeq:NP_057149.1
UniGene:Hs.180312 ProteinModelPortal:Q9Y3D3 SMR:Q9Y3D3
IntAct:Q9Y3D3 STRING:Q9Y3D3 PhosphoSite:Q9Y3D3 DMDM:13633952
PaxDb:Q9Y3D3 PRIDE:Q9Y3D3 DNASU:51021 Ensembl:ENST00000372945
GeneID:51021 KEGG:hsa:51021 UCSC:uc001jts.1 GeneCards:GC10M075008
HGNC:HGNC:14048 MIM:609204 MIM:610498 neXtProt:NX_Q9Y3D3
Orphanet:254920 PharmGKB:PA31000 InParanoid:Q9Y3D3 GenomeRNAi:51021
NextBio:53544 ArrayExpress:Q9Y3D3 Bgee:Q9Y3D3 CleanEx:HS_MRPS16
Genevestigator:Q9Y3D3 Uniprot:Q9Y3D3
Length = 137
Score = 146 (56.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 25/51 (49%), Positives = 40/51 (78%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L G
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92
Score = 84 (34.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYRGGHLTIRLALGGCTNRPFYRIVAAHN 39
>MGI|MGI:1913492 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 MGI:MGI:1913492 GO:GO:0005739 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 OMA:YNKRARD OrthoDB:EOG4D7Z73 EMBL:AB049949
EMBL:AK019243 EMBL:AK005206 EMBL:BC024656 IPI:IPI00132147
RefSeq:NP_079716.1 UniGene:Mm.23747 ProteinModelPortal:Q9CPX7
SMR:Q9CPX7 STRING:Q9CPX7 PhosphoSite:Q9CPX7 PaxDb:Q9CPX7
PRIDE:Q9CPX7 Ensembl:ENSMUST00000061444 GeneID:66242 KEGG:mmu:66242
UCSC:uc007sjp.1 InParanoid:Q9CPX7 NextBio:321067 Bgee:Q9CPX7
CleanEx:MM_MRPS16 Genevestigator:Q9CPX7
GermOnline:ENSMUSG00000049960 Uniprot:Q9CPX7
Length = 135
Score = 146 (56.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 25/51 (49%), Positives = 40/51 (78%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L G
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92
Score = 84 (34.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYHGGHLTIRLALGGCTNRPFYRIVAAHN 39
>RGD|1582995 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 RGD:1582995
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 EMBL:CH474061
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD OrthoDB:EOG4D7Z73
IPI:IPI00362092 RefSeq:NP_001102988.1 UniGene:Rn.8846
Ensembl:ENSRNOT00000009207 GeneID:688912 KEGG:rno:688912
UCSC:RGD:1582995 NextBio:737514 Uniprot:D4A7X1
Length = 135
Score = 138 (53.6 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 24/51 (47%), Positives = 39/51 (76%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G ++ P+ +L G
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AQLSKPMEKLLG 92
Score = 84 (34.6 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 38 KCVEGMSKSIRLARYGCTNRPFYHIVVIHS 67
K G +IRLA GCTNRPFY IV H+
Sbjct: 10 KAYHGGHLTIRLALGGCTNRPFYRIVAAHN 39
>UNIPROTKB|E1C907 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AADN02040962
IPI:IPI00589221 RefSeq:XP_001233312.1 RefSeq:XP_003642554.1
RefSeq:XP_003643364.1 UniGene:Gga.10148 Ensembl:ENSGALT00000000703
GeneID:100858706 GeneID:769996 KEGG:gga:100858706 KEGG:gga:769996
NextBio:20920220 Uniprot:E1C907
Length = 136
Score = 126 (49.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
++ R+ + +EQLG DPLPN + EK+ LN+ER+R+WLG ++ P +L G
Sbjct: 39 SKRARDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHWLGCG-AQLSRPAEKLLG 92
Score = 78 (32.5 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 47 IRLARYGCTNRPFYHIVVIHS 67
IR A GCTNRPFY IV HS
Sbjct: 19 IRFALGGCTNRPFYRIVAAHS 39
>ZFIN|ZDB-GENE-041010-123 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein S16"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 ZFIN:ZDB-GENE-041010-123 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 CTD:51021 HOVERGEN:HBG017758 EMBL:BC083390
IPI:IPI00507006 RefSeq:NP_001006030.1 UniGene:Dr.13763
ProteinModelPortal:Q5XJB4 PRIDE:Q5XJB4 GeneID:450009
KEGG:dre:450009 InParanoid:Q5XJB4 NextBio:20832992
ArrayExpress:Q5XJB4 Bgee:Q5XJB4 Uniprot:Q5XJB4
Length = 129
Score = 132 (51.5 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
R+ + +EQ+G++DPLPN + EKLV+ N ERI++W+ H T PV +L G
Sbjct: 43 RDGKYLEQVGSYDPLPNIHNEKLVAFNYERIKHWIACG-AHTTKPVAKLLG 92
Score = 64 (27.6 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 47 IRLARYGCTNRPFYHIVVIHS 67
IRLA G TNRPFY IV ++
Sbjct: 19 IRLALGGATNRPFYRIVAAYN 39
>UNIPROTKB|B4E032 [details] [associations]
symbol:MRPS16 "cDNA FLJ58442, highly similar to 28S
ribosomal protein S16, mitochondrial (S16mt)" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
EMBL:AK303204 IPI:IPI00909954 SMR:B4E032 STRING:B4E032
Ensembl:ENST00000416782 OMA:CIFAKAY Uniprot:B4E032
Length = 123
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNL 177
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GK +
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGKTDARFPEQ 101
Query: 178 CDLRPSQ 184
+ RP Q
Sbjct: 102 GEERPEQ 108
>POMBASE|SPBC354.06 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein subunit
S16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003735 GO:GO:0032543 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 PIR:T40286
RefSeq:NP_595230.2 STRING:O43020 EnsemblFungi:SPBC354.06.1
GeneID:2541005 OrthoDB:EOG498Z9D NextBio:20802119 Uniprot:O43020
Length = 96
Score = 89 (36.4 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 121 QPIEQLGTFDPLPNEY--QEKL-----VSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172
+PIE +GTFDP+P + Q+ + + LN+ER +YW+ + VR L K +
Sbjct: 32 KPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVERFKYWISVG-AQPSDTVRSLAEKFQL 89
Score = 81 (33.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHS 67
M IRLAR+G NRPFYHIVV ++
Sbjct: 1 MVVKIRLARHGVRNRPFYHIVVANA 25
>TAIR|locus:2139624 [details] [associations]
symbol:SSR16 "small subunit ribosomal protein 16"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS;TAS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP;RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0009941 GO:GO:0009793
GO:GO:0005840 GO:GO:0003735 EMBL:AL161585 EMBL:AL023094
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:FSKAGIM EMBL:AY045607 EMBL:AY048218
EMBL:AY052220 EMBL:AF412081 EMBL:AY086956 EMBL:AY143795
IPI:IPI00529246 PIR:T05282 RefSeq:NP_195188.1 UniGene:At.22916
HSSP:P80379 ProteinModelPortal:O65686 SMR:O65686 STRING:O65686
PaxDb:O65686 PRIDE:O65686 ProMEX:O65686 EnsemblPlants:AT4G34620.1
GeneID:829614 KEGG:ath:AT4G34620 TAIR:At4g34620 InParanoid:O65686
PhylomeDB:O65686 ProtClustDB:CLSN2916103 ArrayExpress:O65686
Genevestigator:O65686 Uniprot:O65686
Length = 113
Score = 87 (35.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 115 RMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
+ RR+ + IE LG +DPL + VSL +RI+YWL
Sbjct: 26 KSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYWL 63
Score = 76 (31.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 43 MSKSIRLARYGCTNRPFYHIVV 64
M+ IRLAR GC +RPFY +VV
Sbjct: 1 MTVKIRLARLGCKHRPFYRVVV 22
>UNIPROTKB|F1PT11 [details] [associations]
symbol:F1PT11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:CIFAKAY EMBL:AAEX03016714 Ensembl:ENSCAFT00000014176
Uniprot:F1PT11
Length = 134
Score = 96 (38.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWL--GTSDIHITSPVRELFG 168
+E L + DPLPN + EK+V+LN+++I +W+ GT H++ V ++ G
Sbjct: 47 MEHLDSCDPLPNSHGEKIVALNLDQIWHWIHYGT---HLSQQVEKILG 91
Score = 73 (30.8 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 46 SIRLARYGCTNRPFYHIVVIHS-SEHSVGLAHID 78
+I LA C N+PFYHIV H+ S + H+D
Sbjct: 18 TILLALSDCANQPFYHIVAAHNRSSDGCFMEHLD 51
>TIGR_CMR|SPO_3253 [details] [associations]
symbol:SPO_3253 "ribosomal protein S16" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_168456.1
ProteinModelPortal:Q5LNF2 SMR:Q5LNF2 GeneID:3195394
KEGG:sil:SPO3253 PATRIC:23379951 OMA:GSWNPML Uniprot:Q5LNF2
Length = 121
Score = 95 (38.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/40 (45%), Positives = 32/40 (80%)
Query: 114 TRMRRNDQPIEQLGTFDPL-PNEYQEKLVSLNIERIRYWL 152
+RM R+ + IE+LGT++PL P + +E+ V +++ER++YWL
Sbjct: 25 SRMPRDGRFIEKLGTYNPLLPKDSEER-VKMDVERVQYWL 63
Score = 63 (27.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHS 67
M+ IRLAR G RPFY IV S
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADS 25
>TIGR_CMR|ECH_0192 [details] [associations]
symbol:ECH_0192 "ribosomal protein S16" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:YP_507016.1
ProteinModelPortal:Q2GHR7 SMR:Q2GHR7 STRING:Q2GHR7 GeneID:3927148
KEGG:ech:ECH_0192 PATRIC:20575921
BioCyc:ECHA205920:GJNR-192-MONOMER Uniprot:Q2GHR7
Length = 87
Score = 80 (33.2 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 114 TRMRRNDQPIEQLGTFDP-LPNEYQEKLVSLNIERIRYWL 152
+R+ R+ + IE LG ++P LP E+ E V + ++R++YWL
Sbjct: 25 SRVARDGKFIESLGFYNPMLPKEH-ELFVKVKVDRLKYWL 63
Score = 75 (31.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHS 67
MS IRLAR+G RPFY +VV S
Sbjct: 1 MSVKIRLARFGAKKRPFYRVVVADS 25
>TIGR_CMR|NSE_0123 [details] [associations]
symbol:NSE_0123 "ribosomal protein S16" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
OMA:DSRNSRD RefSeq:YP_506023.1 ProteinModelPortal:Q2GES3
STRING:Q2GES3 GeneID:3932034 KEGG:nse:NSE_0123 PATRIC:22680351
ProtClustDB:CLSK2528008 BioCyc:NSEN222891:GHFU-159-MONOMER
Uniprot:Q2GES3
Length = 85
Score = 82 (33.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYW 151
R+ + +EQ+G++DPL ++ V L+IERIRYW
Sbjct: 34 RDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRYW 67
Score = 68 (29.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 47 IRLARYGCTNRPFYHIVVIHSS 68
IRLAR+G RP+Y IVV +SS
Sbjct: 10 IRLARFGRKKRPYYKIVVANSS 31
>UNIPROTKB|P0A7T3 [details] [associations]
symbol:rpsP "30S ribosomal subunit protein S16"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IDA] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0043566 "structure-specific DNA
binding" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0003735 GO:GO:0004520 PDB:3J00 PDBsum:3J00
GO:GO:0000028 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV
PDBsum:3IZW GO:GO:0022627 GO:GO:0043566 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ EMBL:X01818 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 PDB:4GAS PDB:4GD1 PDBsum:4GAS
PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY
PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN
PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU
PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR
PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M
PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V
PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ
PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY
PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
eggNOG:COG0228 HOGENOM:HOG000246720 OMA:KRMGAHK
ProtClustDB:PRK00040 PIR:S07948 RefSeq:NP_417100.1
RefSeq:YP_490832.1 ProteinModelPortal:P0A7T3 SMR:P0A7T3
DIP:DIP-47829N IntAct:P0A7T3 MINT:MINT-1280042 PaxDb:P0A7T3
PRIDE:P0A7T3 EnsemblBacteria:EBESCT00000001904
EnsemblBacteria:EBESCT00000014322 GeneID:12930606 GeneID:947103
KEGG:ecj:Y75_p2557 KEGG:eco:b2609 PATRIC:32120617 EchoBASE:EB0908
EcoGene:EG10915 BioCyc:EcoCyc:EG10915-MONOMER
BioCyc:ECOL316407:JW2590-MONOMER EvolutionaryTrace:P0A7T3
Genevestigator:P0A7T3 Uniprot:P0A7T3
Length = 82
Score = 78 (32.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLN 171
+R RN + IE++G F+P+ +E +E L+++RI +W+G I+ V L ++N
Sbjct: 24 SRNARNGRFIERVGFFNPIASEKEEG-TRLDLDRIAHWVGQGAT-ISDRVAALIKEVN 79
Score = 68 (29.0 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 46 SIRLARYGCTNRPFYHIVVIHS 67
+IRLAR+G RPFY +VV S
Sbjct: 3 TIRLARHGAKKRPFYQVVVADS 24
>TIGR_CMR|APH_0054 [details] [associations]
symbol:APH_0054 "ribosomal protein S16" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959
RefSeq:YP_504687.1 ProteinModelPortal:Q2GLR4 STRING:Q2GLR4
GeneID:3930190 KEGG:aph:APH_0054 PATRIC:20948658 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:KRMGAHK ProtClustDB:PRK00040
BioCyc:APHA212042:GHPM-92-MONOMER Uniprot:Q2GLR4
Length = 96
Score = 76 (31.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
+R++R+ + IEQ+G ++P+ + +N ER+ YWLG
Sbjct: 25 SRVQRDGKCIEQIGFYNPMVECGAPGFLKVNAERLGYWLG 64
Score = 64 (27.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHS 67
MS IRL R G +PFY IVV S
Sbjct: 1 MSVKIRLMRLGAKKKPFYRIVVADS 25
>TIGR_CMR|CPS_4069 [details] [associations]
symbol:CPS_4069 "ribosomal protein S16" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
RefSeq:YP_270724.1 ProteinModelPortal:Q47WU8 SMR:Q47WU8
STRING:Q47WU8 GeneID:3519834 KEGG:cps:CPS_4069 PATRIC:21471013
OMA:DSRNSRD BioCyc:CPSY167879:GI48-4082-MONOMER Uniprot:Q47WU8
Length = 81
Score = 69 (29.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
+R R+ + IE++G F+P EKL L+++RI +W+G
Sbjct: 24 SRNSRDGRFIEKVGFFNPTAQGQAEKL-RLDLDRITHWVG 62
Score = 63 (27.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 46 SIRLARYGCTNRPFYHIVVIHS 67
+IRLAR G RPFY +VV S
Sbjct: 3 TIRLARGGAKKRPFYQVVVADS 24
>TIGR_CMR|SO_1357 [details] [associations]
symbol:SO_1357 "ribosomal protein S16" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:NP_716977.1
ProteinModelPortal:Q8EH72 SMR:Q8EH72 GeneID:1169178
KEGG:son:SO_1357 PATRIC:23522368 Uniprot:Q8EH72
Length = 82
Score = 65 (27.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 46 SIRLARYGCTNRPFYHIVVIHS 67
+IRLAR G RPFY+IVV S
Sbjct: 3 TIRLARGGAKKRPFYNIVVADS 24
Score = 64 (27.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
+R R+ + IE++G F+PL QE+ + L++ R+ +W+
Sbjct: 24 SRNARDGRFIERVGFFNPLARG-QEETLRLDLARVEHWV 61
>UNIPROTKB|Q9KUG0 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 74 (31.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 46 SIRLARYGCTNRPFYHIVVIHSSEHSVG 73
+IRLAR+G RPFY IVV S + G
Sbjct: 3 TIRLARHGAKKRPFYQIVVADSRNSATG 30
Score = 54 (24.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
IE++G F+P +E L L+++R+ +W+
Sbjct: 33 IEKVGFFNPTATGQEEGL-RLDLDRVNHWV 61
>TIGR_CMR|VC_0561 [details] [associations]
symbol:VC_0561 "ribosomal protein S16" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 74 (31.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 46 SIRLARYGCTNRPFYHIVVIHSSEHSVG 73
+IRLAR+G RPFY IVV S + G
Sbjct: 3 TIRLARHGAKKRPFYQIVVADSRNSATG 30
Score = 54 (24.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
IE++G F+P +E L L+++R+ +W+
Sbjct: 33 IEKVGFFNPTATGQEEGL-RLDLDRVNHWV 61
>TIGR_CMR|CHY_1433 [details] [associations]
symbol:CHY_1433 "ribosomal protein S16" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_360265.1
ProteinModelPortal:Q3AC69 STRING:Q3AC69 GeneID:3727827
KEGG:chy:CHY_1433 PATRIC:21275997 OMA:HYDPRKT
BioCyc:CHYD246194:GJCN-1432-MONOMER Uniprot:Q3AC69
Length = 86
Score = 62 (26.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 43 MSKSIRLARYGCTNRPFYHIVV 64
M+ IRL R G N PFY +VV
Sbjct: 1 MAVKIRLKRMGAKNNPFYRVVV 22
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 115 RMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172
R R+ + I+++G +DP+ Q V +N E+ WL +T R LF K +
Sbjct: 26 RSPRDGRVIDEIGYYDPVK---QPAAVVINEEKALDWL-KKGAQLTETARALFRKAGV 79
>ASPGD|ASPL0000067200 [details] [associations]
symbol:AN7701 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:BN001304 EMBL:AACD01000130 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
OrthoDB:EOG498Z9D RefSeq:XP_680970.1 ProteinModelPortal:Q5AVH9
STRING:Q5AVH9 EnsemblFungi:CADANIAT00000832 GeneID:2869400
KEGG:ani:AN7701.2 OMA:YNIVVAH Uniprot:Q5AVH9
Length = 105
Score = 73 (30.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 115 RMRRNDQPIEQLGTFDPLP------------NEYQEKLVSLNIERIRYWLG 153
R RN +PIE +GT +P+P N K +SL+ R +YWLG
Sbjct: 26 RSARNSKPIEVIGTLNPIPQRPTNLSDEEARNARPYKEISLDRSRAKYWLG 76
Score = 62 (26.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 47 IRLARYGCTNRPFYHIVV 64
IRLAR+G ++PFY+IVV
Sbjct: 5 IRLARFGNKHQPFYNIVV 22
>TIGR_CMR|BA_3982 [details] [associations]
symbol:BA_3982 "ribosomal protein S16" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:NP_846224.1
RefSeq:YP_020621.1 RefSeq:YP_029946.1 ProteinModelPortal:Q81WJ3
DNASU:1086780 EnsemblBacteria:EBBACT00000008723
EnsemblBacteria:EBBACT00000015777 EnsemblBacteria:EBBACT00000020497
GeneID:1086780 GeneID:2820040 GeneID:2848276 KEGG:ban:BA_3982
KEGG:bar:GBAA_3982 KEGG:bat:BAS3695 OMA:FSKAGIM
BioCyc:BANT260799:GJAJ-3753-MONOMER
BioCyc:BANT261594:GJ7F-3870-MONOMER Uniprot:Q81WJ3
Length = 90
Score = 63 (27.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI 172
+R R+ + IE++GT++P+ Q V +N E WLG + VR LF I
Sbjct: 25 SRSPRDGRFIEEIGTYNPVA---QPAEVKINEEAALKWLGNG-AKPSDTVRNLFSNQGI 79
Score = 57 (25.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 43 MSKSIRLARYGCTNRPFYHIVVIHS 67
M+ IRL R G PFY +VV S
Sbjct: 1 MAVKIRLKRMGAKKTPFYRVVVADS 25
>SGD|S000005934 [details] [associations]
symbol:MRPS16 "Mitochondrial ribosomal protein of the small
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005840
"ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0032543 "mitochondrial translation" evidence=IC] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IPI] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IPI] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 SGD:S000005934 EMBL:BK006949
GO:GO:0003735 GO:GO:0032543 EMBL:U33335 GO:GO:0005763
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 OrthoDB:EOG498Z9D
PIR:S59680 RefSeq:NP_015312.1 ProteinModelPortal:Q02608 SMR:Q02608
DIP:DIP-4453N IntAct:Q02608 MINT:MINT-572585 STRING:Q02608
PaxDb:Q02608 PeptideAtlas:Q02608 EnsemblFungi:YPL013C GeneID:856094
KEGG:sce:YPL013C CYGD:YPL013c OMA:PARNNPK NextBio:981128
Genevestigator:Q02608 GermOnline:YPL013C Uniprot:Q02608
Length = 121
Score = 70 (29.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 114 TRMRRNDQPIEQLGTFDPLPNEYQE----------KLVSLNIERIRYWLGTSDIHITSPV 163
+R R+ +PIE LGT+ P+P+ + K V L+ +R +YW+G + V
Sbjct: 28 SRKARDAKPIEVLGTYVPVPSPVTKRELKRGVVPIKDVKLDFDRTKYWIGVG-AQPSETV 86
Query: 164 RELFGKLNI 172
+L K I
Sbjct: 87 TKLLRKAGI 95
Score = 62 (26.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 47 IRLARYGCTNRPFYHIVVIHS 67
IRLAR+G N P Y+IVV +S
Sbjct: 8 IRLARFGRKNSPVYNIVVANS 28
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.134 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 198 198 0.00083 111 3 11 22 0.43 32
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 607 (65 KB)
Total size of DFA: 198 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.49u 0.08s 18.57t Elapsed: 00:00:03
Total cpu time: 18.50u 0.08s 18.58t Elapsed: 00:00:03
Start: Thu Aug 15 12:07:31 2013 End: Thu Aug 15 12:07:34 2013