RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11684
         (198 letters)



>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score = 67.0 bits (164), Expect = 8e-16
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 49/124 (39%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLAR+G   RPFY +VV  S                                       
Sbjct: 4   IRLARHGAKKRPFYQVVVADS--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   R  RN + IE++G F+P+ +E +E+   L+++RI +W+G     I+  V  L
Sbjct: 25  --------RNARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQG-ATISDRVAAL 74

Query: 167 FGKL 170
             ++
Sbjct: 75  IKEV 78


>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus
           thermophilus [TaxId: 274]}
          Length = 83

 Score = 66.6 bits (163), Expect = 1e-15
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 50/126 (39%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLAR+G  + P Y IVV  +                                       
Sbjct: 4   IRLARFGSKHNPHYRIVVTDA--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   R +R+ + IE++G +DP         + +++ER RYWL       T   R L
Sbjct: 25  --------RRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRL 73

Query: 167 FGKLNI 172
             +  +
Sbjct: 74  LRQAGV 79


>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 101

 Score = 57.5 bits (139), Expect = 6e-12
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 52/126 (41%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLA++G  + P Y IVV+ +                                       
Sbjct: 4   IRLAKFGRKHHPIYRIVVMDA--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   +  R  + I+ LGT+DP           +  E+++ W+    + ++   + +
Sbjct: 25  --------KSPREGKYIDILGTYDPKRKVLIN----VYPEKVKEWVLKG-VELSHRAKAI 71

Query: 167 FGKLNI 172
                I
Sbjct: 72  LWNHGI 77


>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 154

 Score = 25.3 bits (54), Expect = 3.9
 Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 8/137 (5%)

Query: 36  GAKCVEGMSKSIRLA-RYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVK 94
               +      +  A +Y      F   +  +          + +         +   +K
Sbjct: 16  AWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLK 75

Query: 95  SSEHSVGLAHIDKKWSSKITRMRRNDQPI---EQLGTFDPLPNEYQEKLVSLNIERIRYW 151
             + +        K ++    +    Q        G  D             N+E +  +
Sbjct: 76  DQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAM----NLEAVNTY 131

Query: 152 LGTSDIHITSPVRELFG 168
            GT DIH     R + G
Sbjct: 132 EGTHDIHALILGRAITG 148


>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 25.4 bits (55), Expect = 4.5
 Identities = 7/77 (9%), Positives = 17/77 (22%), Gaps = 9/77 (11%)

Query: 37  AKCVEGMSKSIRLARYGCTNRPFYHI-------VVIHSSEHSVGLAHIDKKWSSKLYVRR 89
            K      +   L +YG      + +       V+    + +               +  
Sbjct: 165 KKQAAMAKR--VLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDE 222

Query: 90  CVNVKSSEHSVGLAHID 106
                 + + V     D
Sbjct: 223 FEKEGYAVYRVNTRFQD 239


>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 108

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 23/82 (28%)

Query: 20  SKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDK 79
           S MSRP+              E       + RY   N+ +Y  +  +S++++        
Sbjct: 14  SAMSRPIIHFGSDY-------EDRYYRENMHRYP--NQVYYRPMDEYSNQNN-------- 56

Query: 80  KWSSKLYVRRCVNVKSSEHSVG 101
                 +V  CVN+   +H+V 
Sbjct: 57  ------FVHDCVNITIKQHTVT 72


>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of
           SecA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 220

 Score = 24.5 bits (52), Expect = 9.7
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 97  EHSVGLAHIDKKWSSKITRMRRNDQPIE--QLGTFDPLPNEYQE---KLVSLNIERIRY 150
           E +V L  ID+KW   +  M    + I    +   DPL  EYQ     +    ++ ++ 
Sbjct: 152 ERNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQRDPL-VEYQREGYDMFMAMLDGMKE 209


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,209
Number of extensions: 33034
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 15
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)