BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11686
(939 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPP 137
VH + V ELL+ Y++G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP
Sbjct: 63 AVHGEPHVLELLQQYKVGELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPP 120
Query: 138 PSMLVENFLTPSLL 151
+L E FLTP+ L
Sbjct: 121 AELLAERFLTPNEL 134
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 175 HSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 234
H E L+ KV G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP +L
Sbjct: 69 HVLELLQQYKV--GELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELL 124
Query: 235 YSSLL 239
L
Sbjct: 125 AERFL 129
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 407 KVRTFNEKGEKHGTVCARMNDK-ENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
++R+ K E T+ + N + E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 169 ELRSRFPKHEVTATLQSAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 228
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPP 137
VH + V ELL+ Y++G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP
Sbjct: 63 AVHGEPHVLELLQQYKVGELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPP 120
Query: 138 PSMLVENFLTPSLL 151
+L E FLTP+ L
Sbjct: 121 AELLAERFLTPNEL 134
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 185 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 228
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 175 HSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 234
H E L+ KV G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP +L
Sbjct: 69 HVLELLQQYKV--GELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELL 124
Query: 235 YSSLL 239
L
Sbjct: 125 AERFL 129
>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
pdb|2A9D|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With Arg At Residue 161
Length = 372
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 268
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 269 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 327 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 353
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 273 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 332
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 333 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLL 151
DP+ +P R P L+ S KP+NAEPP +L E FLTP+ L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNEL 40
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 91 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 134
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
DP+ +P R P L+ S KP+NAEPP +L L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFL 35
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPP 137
VH + V ELL+ Y++G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP
Sbjct: 63 AVHGEPHVLELLQQYKVGELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPP 120
Query: 138 PSMLVENFLTPSLL 151
+L E FLTP+ L
Sbjct: 121 AELLAERFLTPNEL 134
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 407 KVRTFNEKGEKHGTVCARMNDK-ENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
++R+ K E T+ A N + E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 169 ELRSRFPKHEVTATLQAAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 228
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 175 HSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 234
H E L+ KV G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP +L
Sbjct: 69 HVLELLQQYKV--GELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELL 124
Query: 235 YSSLL 239
L
Sbjct: 125 AERFL 129
>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
At Resting State
pdb|2A9A|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
pdb|2A9A|B Chain B, Crystal Structure Of Recombinant Chicken Sulfite Oxidase
With The Bound Product, Sulfate, At The Active Site
Length = 372
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 268
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 269 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 327 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 353
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 273 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 332
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 333 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLL 151
DP+ +P R P L+ S KP+NAEPP +L E FLTP+ L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNEL 40
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 91 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 134
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
DP+ +P R P L+ S KP+NAEPP +L L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFL 35
>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite
Oxidase At Resting State
pdb|2A9C|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
pdb|2A9C|B Chain B, Crystal Structure Of R138q Mutant Of Recombinant Chicken
Sulfite Oxidase With The Bound Product, Sulfate, At The
Active Site
Length = 372
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 268
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 269 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 327 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 353
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 447 GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVEIWSKAVDSSYNTQPESFANIW 503
G TW ARL+ G + +L V +EI KAVDSSYN QP+S A IW
Sbjct: 294 GGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIW 353
Query: 504 NLRGVLSNAYHRVRVEI 520
NLRGVLS A+HRVRV +
Sbjct: 354 NLRGVLSTAWHRVRVSV 370
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLL 151
DP+ +P R P L+ S KP+NAEPP +L E FLTP+ L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNEL 40
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 91 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 134
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
DP+ +P R P L+ S KP+NAEPP +L L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFL 35
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQND+KGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDFKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPP 137
VH + V ELL+ Y++G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP
Sbjct: 63 AVHGEPHVLELLQQYKVGELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPP 120
Query: 138 PSMLVENFLTPSLL 151
+L E FLTP+ L
Sbjct: 121 AELLAERFLTPNEL 134
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 185 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 175 HSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 234
H E L+ KV G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP +L
Sbjct: 69 HVLELLQQYKV--GELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELL 124
Query: 235 YSSLL 239
L
Sbjct: 125 AERFL 129
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQND KGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPP 137
VH + V ELL+ Y++G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP
Sbjct: 63 AVHGEPHVLELLQQYKVGELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPP 120
Query: 138 PSMLVENFLTPSLL 151
+L E FLTP+ L
Sbjct: 121 AELLAERFLTPNEL 134
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNL G+LS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLMGMLSTAWHRVRVSV 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 185 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 228
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 175 HSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 234
H E L+ KV G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP +L
Sbjct: 69 HVLELLQQYKV--GELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELL 124
Query: 235 YSSLL 239
L
Sbjct: 125 AERFL 129
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQND KGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
++ V+GYAWSGGG+ +VRVDV++D GRTW VA G +AP R W W LW T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T E+ I+ +D + N PD + ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 3/134 (2%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPP 137
VH + V ELL+ Y++G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP
Sbjct: 63 AVHGEPHVLELLQQYKVGELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPP 120
Query: 138 PSMLVENFLTPSLL 151
+L E FLTP+ L
Sbjct: 121 AELLAERFLTPNEL 134
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNL GVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLMGVLSTAWHRVRVSV 464
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 24/44 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGI 465
CA E V+PVKGL W A+ A W GARL DVL AG
Sbjct: 185 CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGF 228
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 175 HSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 234
H E L+ KV G +S +++ AA D A DP+ +P R P L+ S KP+NAEPP +L
Sbjct: 69 HVLELLQQYKV--GELSPDEAP-AAPD-AQDPFAGDPPRHPGLRVNSQKPFNAEPPAELL 124
Query: 235 YSSLL 239
L
Sbjct: 125 AERFL 129
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme
pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme
Length = 448
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 105/224 (46%), Gaps = 58/224 (25%)
Query: 569 DGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTV------------------- 609
D KMKL SPEF S FT LK L +F K ++LRIAG G V
Sbjct: 41 DDKMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAG-GAVRDLLNGVKPQDIDFATTAT 99
Query: 610 ---------TAKVLSYRNRREKEDRIG-----ENQPFRKLTLSV---------------- 639
+A + NR EK I EN L + V
Sbjct: 100 PTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQ 159
Query: 640 QDKDRS--------FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFF 691
+D +R DGT++DYFNG+EDLK FVG RIQEDYLRILRYFRF+
Sbjct: 160 KDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFY 219
Query: 692 ARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGS 735
RI + P +H E L AI N GL ISGERIW EL KIL G+
Sbjct: 220 GRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGN 263
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/41 (82%), Positives = 37/41 (90%)
Query: 898 ITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGM 938
ITTLRIDVTTDGRHAEV+FT DW+ DA RRDLT+NSMFLG
Sbjct: 136 ITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGF 176
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVK 434
++ D+L G KP DIDFAT ATP QMK MF +R N +GEKHGT+ AR+++ ENFE+
Sbjct: 79 AVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHE-ENFEIT 137
Query: 435 PVK 437
++
Sbjct: 138 TLR 140
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 6/111 (5%)
Query: 797 QFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEIN 856
+F+ RI + P +H E L AI +N GL ISGERIW EL KIL G+ ++ + +++
Sbjct: 217 RFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLD 276
Query: 857 MFPHLGTDETFATLDFEGLFRSM----PIPFTLLFSANFFRNLARITTLRI 903
+ P++G + +F+ + +++ P P TLL A+ F+ +T L +
Sbjct: 277 VAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLL--ASLFKVQDDVTKLDL 325
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 746 YQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQ 797
YQ+ ++ S+ T R + EL+KY+ + L+K+ +W +P FP++G+ IR+
Sbjct: 360 YQDFIIDSREPDATTR--VCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRK 409
>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|B Chain B, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|C Chain C, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|D Chain D, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|E Chain E, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
pdb|1OGP|F Chain F, The Crystal Structure Of Plant Sulfite Oxidase Provides
Insight Into Sulfite Oxidation In Plants And Animals
Length = 393
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 255 HESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQ 314
ES + Q DYK F PS +WD ++++ + PV SAIC V D ++ ++ ++ ++
Sbjct: 230 EESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAIC-SVEDVQM-VKPGKVSIK 287
Query: 315 GYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRH-----WGWTLWRATIPVDP 369
GYA SGGG+ I RVD+++D G+ W A+ T + + ++ H W W L+ ATI V
Sbjct: 288 GYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQ 347
Query: 370 KTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
T+ ++ +D A N P+ +++++
Sbjct: 348 TTEVIA----------KAVDSAANVQPENVESVW 371
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 29/35 (82%)
Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRV 516
E+ +KAVDS+ N QPE+ ++WNLRGVL+ ++HRV
Sbjct: 350 EVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRV 384
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVH 480
CA +V+ V+G+ W +A+GNA W GA+L DVL+ GI + + +HV
Sbjct: 98 CAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVE 156
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 114 YVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTP 148
Y EP R P LK + +P+NAEPP S LV +++TP
Sbjct: 10 YSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTP 44
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 207 YVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLR---IPFCSHTGKVILSDH 255
Y EP R P LK + +P+NAEPP S L SS + + + + G + + DH
Sbjct: 10 YSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVDH 61
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
Y+ ++ +H ++ IWV V+D+TEFV +HPGG +M AAGG +EPFWA+Y VH
Sbjct: 7 YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 66
Query: 82 QDEVFELLESYRIGNI 97
Q V ELL Y+IG +
Sbjct: 67 QSHVRELLAQYKIGEL 82
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome
B5
Length = 94
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ HKD KS+ WV+ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 4 VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V +V EL ++Y IG + +D AK
Sbjct: 60 DVGHSTDVRELSKTYIIGELHPDDRSKIAK 89
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ HKD KS+ WV+ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 9 VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 64
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V + EL ++Y IG + +D AK
Sbjct: 65 DVGHSTDARELSKTYIIGELHPDDRSKIAK 94
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ HKD KS+ WV+ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 8 VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 63
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V + EL ++Y IG + +D AK
Sbjct: 64 DVGHSTDARELSKTYIIGELHPDDRSKIAK 93
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ HKD KS+ WV+ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 4 VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V + EL ++Y IG + +D AK
Sbjct: 60 DVGHSTDARELSKTYIIGELHPDDRSKIAK 89
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ HKD KS+ WV+ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 4 VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V + EL ++Y IG + +D AK
Sbjct: 60 DVGHSTDARELSKTYIIGELHPDDRSKIAK 89
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ HKD KS+ WV+ VYD+T++++ HPGGE +++ A G + E F
Sbjct: 4 VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V + EL ++Y IG + +D AK
Sbjct: 60 DVGHSTDARELSKTYIIGELHPDDRSKIAK 89
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 143/359 (39%), Gaps = 100/359 (27%)
Query: 120 RSP-LLKATSLKPYNAEPPPSMLVEN-FLTPSLLSQV---GSSTITLDQAIVSKQLS--S 172
R P LL+ T P+N+EPP + L ++ FLTP L V G D+ I+ ++S
Sbjct: 42 RDPDLLRLTGSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEG 101
Query: 173 FKHSDEKLKLVKVM--------------AGNISQEDSKL--------AAKDIASDPY--- 207
+ K+KL +M AGN +E + + A ++ +
Sbjct: 102 MVETPYKIKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGC 161
Query: 208 ----VMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQ 263
V+ R P +A + A+ P + Y + +R+ +C + I+ ++ W
Sbjct: 162 MLGDVIGKAR-PSKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLH 220
Query: 264 NDYK------------GFS------------PSTDWD------------TVDFAKSP--- 284
D+ G S PS +W T + AKS
Sbjct: 221 PDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRW 280
Query: 285 ------AIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTW 338
AI +L + + IC P +K+ + E+ G+ ++GGG I R++V++D+G++W
Sbjct: 281 WKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSW 340
Query: 339 HVANFTGQDS---QAPLTRHWG-------------WTLWRATIPVD--PKTKEVSIMDM 379
+A+ + +A R +G W W+ +P+ ++K++ I M
Sbjct: 341 KLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGM 399
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 421 VCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAA 463
VCA KE VK G WG A + WTG L DV+ A
Sbjct: 128 VCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKA 170
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYGVH 80
+Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++A AGG + G H
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVG-H 61
Query: 81 LQDEVFELLESYRIGNISQED 101
D EL +++ IG + +D
Sbjct: 62 STD-ARELSKTFIIGELHPDD 81
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome
B5
Length = 82
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYGVH 80
+Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++A AGG + G H
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVG-H 61
Query: 81 LQDEVFELLESYRIGNISQED 101
D EL +++ IG + +D
Sbjct: 62 STD-ARELSKTFIIGELHPDD 81
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG 78
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGG E++ + AGG W G
Sbjct: 2 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVG 60
Query: 79 VHLQDEVFELLESYRIGNISQED 101
H D EL +++ IG + +D
Sbjct: 61 -HSTD-ARELSKTFIIGELHPDD 81
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYGVH 80
+Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++A AGG + G H
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVG-H 61
Query: 81 LQDEVFELLESYRIGNISQED 101
D EL +++ IG + +D
Sbjct: 62 STD-ARELSKTFIIGELHPDD 81
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 99/347 (28%)
Query: 131 PYNAEPPPSMLVEN-FLTPSLLSQV---GSSTITLDQAIVSKQLS--SFKHSDEKLKLVK 184
P+N+EPP + L ++ FLTP L V G D+ I+ ++S + K+KL
Sbjct: 4 PFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVETPYKIKLSD 63
Query: 185 VM--------------AGNISQEDSKL--------AAKDIASDPY-------VMEPVRSP 215
+M AGN +E + + A ++ + V+ R P
Sbjct: 64 IMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKAR-P 122
Query: 216 LLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYK-------- 267
+A + A+ P + Y + +R+ +C + I+ ++ W D+
Sbjct: 123 SKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIP 182
Query: 268 ----GFS------------PSTDWD------------TVDFAKSP---------AIQELP 290
G S PS +W T + AKS AI +L
Sbjct: 183 GVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLN 242
Query: 291 VISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDS-- 348
+ + IC P +K+ + E+ G+ ++GGG I R++V++D+G++W +A+ +
Sbjct: 243 LQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRY 302
Query: 349 -QAPLTRHWG-------------WTLWRATIPVD--PKTKEVSIMDM 379
+A R +G W W+ +P+ ++K++ I M
Sbjct: 303 REAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGM 349
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 421 VCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAA 463
VCA KE VK G WG A + WTG L DV+ A
Sbjct: 78 VCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKA 120
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 15 EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEP 72
E + +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++ A G + E
Sbjct: 3 ESSKAVKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATEN 61
Query: 73 FWAMYGVHLQDEVFELLESYRIGNISQED 101
F V + EL +++ IG + +D
Sbjct: 62 FE---DVGHSTDARELSKTFIIGELHPDD 87
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG 78
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGG E++ + AGG + +G
Sbjct: 2 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHG 60
Query: 79 VHLQDEVFELLESYRIGNISQED 101
H D EL +++ IG + +D
Sbjct: 61 -HSTD-ARELSKTFIIGELHPDD 81
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 4 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78 GVHLQDEVFELLESYRIGNISQED 101
V + EL +++ IG + +D
Sbjct: 60 DVGHSTDARELSKTFIIGELHPDD 83
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYG 78
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++ AGG + +G
Sbjct: 2 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHG 60
Query: 79 VHLQDEVFELLESYRIGNISQED 101
H D EL +++ IG + +D
Sbjct: 61 -HSTD-ARELSKTFIIGELHPDD 81
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal
Rabbit Cytochrome B5
Length = 104
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 13 AGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSI 70
A + + +Y+L +I+ H KS+ W++ VYD+T+F++ HPGGE +++ A G +
Sbjct: 2 AAQSDKDVKYYTLEEIKKHNHSKST-WLILHHKVYDLTKFLEEHPGGEEVLREQAGGDAT 60
Query: 71 EPFWAMYGVHLQDEVFELLESYRIGNISQED-SKLA 105
E F V + EL +++ IG + +D SKL+
Sbjct: 61 ENF---EDVGHSTDARELSKTFIIGELHPDDRSKLS 93
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
+Y+L +IQ H KS+ W++ VYD+T+F++ HPGGE +++ A G + E F V
Sbjct: 11 YYTLEEIQKHNHSKST-WLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE---DV 66
Query: 80 HLQDEVFELLESYRIGNISQED 101
+ E+ +++ IG + +D
Sbjct: 67 GHSTDAREMSKTFIIGELHPDD 88
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 580 HSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSV 639
H F PE+ +A H EG V+ + S R + + + F +
Sbjct: 83 HVMFGPEIIEVATFRGHH--------EGNVSDRTTSQRG---QNGMLLRDNIFGSIEEDA 131
Query: 640 QDKDRSFR------LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
Q +D + D TV DY G +DLK GV +G+P +R +ED +R+LR RF A+
Sbjct: 132 QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK 191
Query: 694 ICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKE 739
+ + E + + L+ +I R++ E K+L + E
Sbjct: 192 LGMRISPETAEPIPRLATLLN---DIPPARLFEESLKLLQAGYGYE 234
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMF 403
+ D+L+GKKP D D TNATP+Q++ +F
Sbjct: 41 GVRDLLLGKKPKDFDVTTNATPEQVRKLF 69
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
Length = 404
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 650 GTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAI 709
GT+ D F G E +++ + VG+ R +ED LR++R RF + + E+ AI
Sbjct: 124 GTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQ---AI 180
Query: 710 KNNLDGLHNISGERIWTELNKILGGSFSKEMM 741
N L +IS ER+ E+ K+LGG F+ +
Sbjct: 181 VQNAPLLAHISVERMTMEMEKLLGGPFAARAL 212
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVK 434
++ D+L+G+ D+D AT+A P+ + A+F +T + G KHGTV ++ + +EV
Sbjct: 28 AVRDLLLGRPIGDVDIATSALPEDVMAIFP----KTID-VGSKHGTVVV-VHKGKAYEVT 81
Query: 435 PVK 437
K
Sbjct: 82 TFK 84
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 2 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 57
Query: 78 GVHLQDEVFELLESYRIGNISQED 101
V + EL +++ IG + +D
Sbjct: 58 DVGHSTDARELSKTFIIGELHPDD 81
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +I+ H KS+ W++ VYD+T+F++ HPGGE +++ A G + E F
Sbjct: 4 VKYYTLEEIKKHNHSKST-WLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF---E 59
Query: 78 GVHLQDEVFELLESYRIGNISQED-SKLA 105
V + EL +++ IG + +D SKL+
Sbjct: 60 DVGHSTDARELSKTFIIGELHPDDRSKLS 88
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK-AAGGSIEPFWAMYGVH 80
+Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE +++ AGG + G H
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVG-H 61
Query: 81 LQDEVFELLESYRIGNISQED 101
D EL +++ IG + +D
Sbjct: 62 STD-ARELSKTFIIGELHPDD 81
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG 78
+ +Y+L +IQ H + KS+ W++ VYDIT F+ HPGG E++++ AG + G
Sbjct: 2 VKYYTLEEIQKHNNAKST-WMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG 60
Query: 79 VHLQDEVFELLESYRIGNISQED 101
H D E+L+++ IG + +D
Sbjct: 61 -HSPD-AREMLKTFIIGELHPDD 81
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
+Y+L +IQ H + KS+ W++ VYD+T+F++ HPGG E++ + AGG + G H
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVG-H 61
Query: 81 LQDEVFELLESYRIGNISQED 101
D EL +++ IG + +D
Sbjct: 62 STD-ARELSKTFIIGELHPDD 81
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
+Y+L +IQ H + KS+ W++ VYD+T++++ HPGGE +++ A G + E F V
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENF---EDV 59
Query: 80 HLQDEVFELLESYRIGNISQED 101
+ EL +++ IG + +D
Sbjct: 60 GHSTDARELSKTFIIGELHPDD 81
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 580 HSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSV 639
H F PE+ +A H EG V+ + S R + + + F +
Sbjct: 82 HVMFGPEIIEVATFRGHH--------EGNVSDRTTSQRG---QNGMLLRDNIFGSIEEDA 130
Query: 640 QDKDRSFR------LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
Q +D + D TV DY G +DLK GV +G+P +R +ED +R+LR RF A+
Sbjct: 131 QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK 190
Query: 694 I 694
+
Sbjct: 191 L 191
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMF 403
+ D+L+GKKP D D TNATP+Q++ +F
Sbjct: 40 GVRDLLLGKKPKDFDVTTNATPEQVRKLF 68
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 580 HSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSV 639
H F PE+ +A H EG V+ + S R + + + F +
Sbjct: 83 HVMFGPEIIEVATFRGHH--------EGNVSDRTTSQRG---QNGMLLRDNIFGSIEEDA 131
Query: 640 QDKDRSFR------LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
Q +D + D TV DY G +DLK GV +G+P +R +ED +R+LR RF A+
Sbjct: 132 QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK 191
Query: 694 I 694
+
Sbjct: 192 L 192
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMF 403
+ D+L+GKKP D D TNATP+Q++ +F
Sbjct: 41 GVRDLLLGKKPKDFDVTTNATPEQVRKLF 69
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
+Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE ++ A G + E F V
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENF---EDV 59
Query: 80 HLQDEVFELLESYRIGNISQED 101
+ EL +++ IG + +D
Sbjct: 60 GHSTDARELSKTFIIGELHPDD 81
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG--EIIMKAAGGSIEPFWAMY 77
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGG E+ +A G + E F
Sbjct: 2 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFE--- 57
Query: 78 GVHLQDEVFELLESYRIGNISQED 101
V + EL +++ IG + +D
Sbjct: 58 DVGHSTDARELSKTFIIGELHPDD 81
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
+ +Y+L +IQ H + KS+ W++ VYD+T+F++ HPGGE ++ A G + E F
Sbjct: 2 VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFE--- 57
Query: 78 GVHLQDEVFELLESYRIGNISQED 101
V + EL +++ IG + +D
Sbjct: 58 DVGHSTDARELSKTFIIGELHPDD 81
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 12 RAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI 70
+ E +++ +Y L ++ LK +W+V VYD+T F+ HPGG E++++ AG +
Sbjct: 1 KGQEVETSVTYYRLEEVAKRNSLKE-LWLVIHGRVYDVTRFLNEHPGGEEVLLEQAG--V 57
Query: 71 EPFWAMYGVHLQDEVFELLESYRIGNISQEDSK 103
+ + V + E+L+ Y IG+I D K
Sbjct: 58 DASESFEDVGHSSDAREMLKQYYIGDIHPSDLK 90
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
+Y+L +IQ H + KS+ W++ VYD+T+F++ H GGE +++ A G + E F V
Sbjct: 4 YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENF---EDV 59
Query: 80 HLQDEVFELLESYRIGNISQED 101
+ EL +++ IG + +D
Sbjct: 60 GHSTDARELSKTFIIGELHPDD 81
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
Length = 404
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 650 GTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAI 709
GT+ D F G E +++ + VG+ R +ED LR R RF + + E+ AI
Sbjct: 124 GTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRXXRAVRFVSELGFALAPDTEQ---AI 180
Query: 710 KNNLDGLHNISGERIWTELNKILGGSFSKEMM 741
N L +IS ER E K+LGG F+ +
Sbjct: 181 VQNAPLLAHISVERXTXEXEKLLGGPFAARAL 212
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVK 434
++ D+L+G+ D+D AT+A P+ + A+F +T + G KHGTV ++ + +EV
Sbjct: 28 AVRDLLLGRPIGDVDIATSALPEDVXAIFP----KTID-VGSKHGTVVV-VHKGKAYEVT 81
Query: 435 PVK 437
K
Sbjct: 82 TFK 84
>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
pdb|2XTS|C Chain C, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
Length = 390
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 293 SAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPL 352
S I P ++ + + G AWSG G+ I RVDV++D G+ W A TGQ L
Sbjct: 266 SVITSPSPQVPIRHGKGPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTARITGQALPKAL 324
Query: 353 TR 354
TR
Sbjct: 325 TR 326
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHL 81
+Y L ++ H + S W+V VYD+T F+ HPGGE +++ G+ + + V
Sbjct: 12 YYRLEEVAKH-NTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGA-DATESFEDVGH 69
Query: 82 QDEVFELLESYRIGNISQEDSK 103
+ E+ + Y IG++ D K
Sbjct: 70 SPDAREMSKQYYIGDVHPNDLK 91
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHL 81
+Y L ++ ++ W+V VYD+T F+ HPGGE +++ G+ + + V
Sbjct: 6 YYRLEEVAK-RNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGA-DATESFEDVGH 63
Query: 82 QDEVFELLESYRIGNISQEDSK 103
+ E+L+ Y IG++ D K
Sbjct: 64 SPDAREMLKQYYIGDVHPNDLK 85
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
+Y L ++ ++ W+V VYDIT F+ HPGG E++++ AG + G H
Sbjct: 11 YYRLEEVAK-RNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLG-H 68
Query: 81 LQDEVFELLESYRIGNISQEDSK 103
D E+L+ Y IG++ D K
Sbjct: 69 SPD-AREMLKQYYIGDVHPNDLK 90
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
+Y L ++ ++ W+V VYDIT F+ HPGG EI+++ AG + G H
Sbjct: 6 YYRLEEVAK-RNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIG-H 63
Query: 81 LQDEVFELLESYRIGNISQEDSK 103
D E+L+ Y IG++ D K
Sbjct: 64 SPD-AREMLKQYYIGDVHPNDLK 85
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
+Y L ++ ++ W+V VYDIT F+ HPGG E++++ AG + G H
Sbjct: 6 YYRLEEVAK-RNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG-H 63
Query: 81 LQDEVFELLESYRIGNISQEDSKLA 105
D E+L+ Y IG++ D K A
Sbjct: 64 SPD-AREMLKQYYIGDVHPNDLKPA 87
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
+Y L ++ ++ W+V VYDIT F+ HPGG E++++ AG + G H
Sbjct: 4 YYRLEEVAK-RNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG-H 61
Query: 81 LQDEVFELLESYRIGNISQEDSK 103
D E+L+ Y IG++ D K
Sbjct: 62 SPD-AREMLKQYYIGDVHPNDLK 83
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHL 81
+Y L ++ ++ W+V VYD+T F+ HPGGE +++ G+ + + V
Sbjct: 11 YYRLEEVAK-RNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGA-DATESFEDVGH 68
Query: 82 QDEVFELLESYRIGNISQEDSK 103
+ E+ + Y IG++ D K
Sbjct: 69 SPDAREMSKQYYIGDVHPNDLK 90
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
pdb|1VFG|B Chain B, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
Length = 390
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 622 KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDY 681
KED I + + +SV +D GT+ DYF G DLK V V PVS I ED
Sbjct: 98 KEDLIRRDFTINAMAISVNLEDY-----GTLIDYFGGLRDLKDKVIR-VLHPVSFI-EDP 150
Query: 682 LRILRYFRFFARICNNPNNHKEEVLSAIKN 711
+RILR RF R+ + E++L N
Sbjct: 151 VRILRALRFAGRLNFKLSRSTEKLLKQAVN 180
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQ 82
Y+ ++ H + ++ +W+++ V+D+T F + HPGG++I+ AG H++
Sbjct: 6 YTKEEVAKH-NTQNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVLKTLAPHVK 64
Query: 83 --DEVFELLESYRIGNI 97
D V + L+ IG +
Sbjct: 65 AADVVMKKLKQTCIGKV 81
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 33 DLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLES 91
+ K W + VYD+T F+ HPGG E++++ AG + G H D E+++
Sbjct: 18 NTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVG-HSSD-AREMMKQ 75
Query: 92 YRIGNISQED 101
Y++G + E+
Sbjct: 76 YKVGELVAEE 85
>pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii
pdb|3H39|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Atp
pdb|3H39|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Atp
pdb|3H3A|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Ctp
pdb|3H3A|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Ctp
Length = 441
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 650 GTVYDYFNGHEDLKKGVC------AFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKE 703
G + D+F G+ DLK+GV +FV DP RILR RF R E
Sbjct: 146 GLLIDFFGGYRDLKEGVIRVLHTLSFVDDPT--------RILRAIRFEQRFDFRIEETTE 197
Query: 704 EVL-SAIKNNLDGLHNISGERIWTELNKIL 732
+L A++ L +G R+ EL KIL
Sbjct: 198 RLLKQAVEEGY--LERTTGPRLRQELEKIL 225
>pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I
pdb|3H37|B Chain B, The Structure Of Cca-Adding Enzyme Apo Form I
Length = 441
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 650 GTVYDYFNGHEDLKKGVC------AFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKE 703
G + D+F G+ DLK+GV +FV DP RILR RF R E
Sbjct: 146 GLLIDFFGGYRDLKEGVIRVLHTLSFVDDPT--------RILRAIRFEQRFDFRIEETTE 197
Query: 704 EVL-SAIKNNLDGLHNISGERIWTELNKIL 732
+L A++ L +G R+ EL KIL
Sbjct: 198 RLLKQAVEEGY--LERTTGPRLRQELEKIL 225
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 26 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 55
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 26 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 55
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 26 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 55
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 26 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 55
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 26 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 55
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 21 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 50
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 35 KSSIWVVFRQGVYDITEFVQMHPGGEI-IMKAAG 67
K W+ R VY+++ +++ HPGGE +M+AAG
Sbjct: 19 KDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAG 52
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 15 EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPG--GEIIMKAAGGSIEP 72
E +TLP ++L + H W+ VYD+T +V HPG G +++ S E
Sbjct: 2 ETEATLPVFTLEQVAEHHS-PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEA 60
Query: 73 FWAM-YGVHLQDEVFELLESYRIGNISQ 99
+ YG LL+ Y IG + +
Sbjct: 61 WETKSYGEPHSSLAARLLQRYLIGTLEE 88
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 WVVFRQGVYDITEFVQMHPGGEIIMKAAGG 68
WVV VYD+T F+ HPGG+ ++K G
Sbjct: 21 WVVINGYVYDLTRFLPNHPGGQDVIKFNAG 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,142,609
Number of Sequences: 62578
Number of extensions: 1258076
Number of successful extensions: 3080
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2867
Number of HSP's gapped (non-prelim): 166
length of query: 939
length of database: 14,973,337
effective HSP length: 108
effective length of query: 831
effective length of database: 8,214,913
effective search space: 6826592703
effective search space used: 6826592703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)