Query psy11686
Match_columns 939
No_of_seqs 738 out of 5352
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:17:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0535|consensus 100.0 1.9E-74 4.2E-79 598.7 18.4 299 112-521 7-380 (381)
2 PLN00177 sulfite oxidase; Prov 100.0 3.9E-61 8.5E-66 542.3 27.4 296 112-522 8-390 (393)
3 cd02111 eukary_SO_Moco molybdo 100.0 5.1E-58 1.1E-62 514.4 26.3 244 124-371 2-324 (365)
4 PLN02252 nitrate reductase [NA 100.0 7.5E-57 1.6E-61 552.7 29.0 310 120-542 84-486 (888)
5 cd02112 eukary_NR_Moco molybdo 100.0 1.4E-56 3.1E-61 504.8 26.8 247 120-368 11-345 (386)
6 cd02114 bact_SorA_Moco sulfite 100.0 6.6E-56 1.4E-60 497.7 26.7 247 112-369 8-328 (367)
7 cd02113 bact_SoxC_Moco bacteri 100.0 2.1E-50 4.6E-55 445.0 21.0 233 137-388 1-299 (326)
8 cd02110 SO_family_Moco_dimer S 100.0 2.1E-47 4.5E-52 423.2 24.0 220 157-388 18-298 (317)
9 PRK11623 pcnB poly(A) polymera 100.0 2.4E-38 5.3E-43 360.0 11.1 188 543-757 70-288 (472)
10 PRK13299 tRNA CCA-pyrophosphor 100.0 6.9E-38 1.5E-42 356.6 14.6 243 543-817 24-286 (394)
11 TIGR01942 pcnB poly(A) polymer 100.0 3.6E-37 7.7E-42 346.8 11.9 187 543-756 33-242 (410)
12 COG0617 PcnB tRNA nucleotidylt 100.0 2.2E-35 4.7E-40 340.6 14.1 193 543-757 26-233 (412)
13 PRK13297 tRNA CCA-pyrophosphor 100.0 6.9E-35 1.5E-39 322.8 12.7 226 542-806 14-264 (364)
14 TIGR02692 tRNA_CCA_actino tRNA 100.0 3.7E-33 8.1E-38 326.0 12.6 195 543-757 31-245 (466)
15 PRK13298 tRNA CCA-pyrophosphor 100.0 7.3E-33 1.6E-37 313.0 12.6 181 544-757 5-212 (417)
16 PRK13296 tRNA CCA-pyrophosphor 100.0 1.8E-32 4E-37 300.6 15.2 256 544-837 5-289 (360)
17 KOG0535|consensus 100.0 3.7E-33 8.1E-38 291.1 8.3 161 403-564 77-273 (381)
18 PRK10885 cca multifunctional t 100.0 1.7E-32 3.8E-37 313.8 12.5 181 544-757 5-212 (409)
19 KOG2159|consensus 100.0 2.8E-31 6.1E-36 293.3 11.5 123 625-750 125-247 (416)
20 PLN00177 sulfite oxidase; Prov 100.0 2.5E-29 5.4E-34 284.3 11.9 160 403-563 79-280 (393)
21 cd02107 YedY_like_Moco YedY_li 99.9 4.3E-28 9.3E-33 251.5 10.0 130 157-297 28-214 (218)
22 cd02112 eukary_NR_Moco molybdo 99.9 7.2E-28 1.6E-32 272.3 11.6 159 403-562 75-277 (386)
23 cd02111 eukary_SO_Moco molybdo 99.9 1.1E-27 2.5E-32 269.4 11.1 158 403-561 60-255 (365)
24 PLN02252 nitrate reductase [NA 99.9 1.8E-27 3.8E-32 293.7 11.8 162 403-565 148-352 (888)
25 cd02113 bact_SoxC_Moco bacteri 99.9 4.4E-27 9.4E-32 260.1 10.1 157 403-563 45-222 (326)
26 cd02114 bact_SorA_Moco sulfite 99.9 1.1E-26 2.5E-31 261.5 11.1 158 403-563 79-272 (367)
27 cd02110 SO_family_Moco_dimer S 99.9 2.6E-25 5.7E-30 247.0 11.6 157 403-562 32-219 (317)
28 cd02108 bact_SO_family_Moco ba 99.9 2.2E-25 4.8E-30 228.5 8.6 123 144-269 8-184 (185)
29 PF03404 Mo-co_dimer: Mo-co ox 99.9 3E-24 6.6E-29 208.4 12.1 86 284-369 2-88 (131)
30 PRK05363 TMAO/DMSO reductase; 99.9 3.9E-24 8.4E-29 231.8 11.4 146 145-297 73-286 (319)
31 cd02109 arch_bact_SO_family_Mo 99.9 5.3E-23 1.1E-27 210.5 9.6 113 156-271 26-173 (180)
32 cd02107 YedY_like_Moco YedY_li 99.9 1.7E-22 3.6E-27 209.9 7.9 133 403-555 42-214 (218)
33 COG2041 Sulfite oxidase and re 99.8 1.9E-20 4.1E-25 203.2 11.8 111 157-270 95-242 (271)
34 cd05398 NT_ClassII-CCAase Nucl 99.8 8.4E-21 1.8E-25 186.8 7.2 96 838-939 20-123 (139)
35 PF00174 Oxidored_molyb: Oxido 99.8 4.2E-21 9.1E-26 195.4 3.2 105 156-263 14-169 (169)
36 PF01743 PolyA_pol: Poly A pol 99.8 2.7E-20 5.8E-25 180.4 6.5 96 838-938 2-105 (126)
37 KOG0537|consensus 99.8 7.4E-20 1.6E-24 175.2 6.7 83 19-104 3-86 (124)
38 COG0617 PcnB tRNA nucleotidylt 99.8 6.5E-20 1.4E-24 212.1 6.1 92 838-938 26-124 (412)
39 TIGR02692 tRNA_CCA_actino tRNA 99.8 1.3E-19 2.9E-24 212.2 7.8 96 838-938 31-133 (466)
40 PRK13299 tRNA CCA-pyrophosphor 99.8 4E-19 8.7E-24 203.0 8.1 95 838-938 24-123 (394)
41 PRK11623 pcnB poly(A) polymera 99.8 6.8E-19 1.5E-23 201.4 7.6 96 838-938 70-179 (472)
42 PF00174 Oxidored_molyb: Oxido 99.8 2.3E-19 5E-24 182.6 2.7 118 403-530 29-168 (169)
43 TIGR01942 pcnB poly(A) polymer 99.7 2.6E-18 5.6E-23 194.5 7.6 96 838-938 33-134 (410)
44 PRK05363 TMAO/DMSO reductase; 99.7 1E-17 2.3E-22 182.0 8.2 133 403-555 116-286 (319)
45 cd02109 arch_bact_SO_family_Mo 99.7 9.6E-17 2.1E-21 164.5 7.5 110 403-531 41-165 (180)
46 PRK13296 tRNA CCA-pyrophosphor 99.7 6.1E-17 1.3E-21 178.7 6.1 92 838-938 4-102 (360)
47 cd00321 SO_family_Moco Sulfite 99.6 1.6E-16 3.5E-21 159.7 6.8 97 156-255 16-156 (156)
48 cd02108 bact_SO_family_Moco ba 99.6 1.2E-16 2.6E-21 164.2 5.9 104 403-526 43-167 (185)
49 PF01743 PolyA_pol: Poly A pol 99.6 4.4E-17 9.5E-22 158.0 0.5 103 544-668 3-126 (126)
50 PHA01806 hypothetical protein 99.6 8.2E-16 1.8E-20 153.9 6.8 108 812-938 7-150 (200)
51 KOG4576|consensus 99.6 4.3E-16 9.2E-21 145.6 3.2 86 18-103 77-162 (167)
52 PF00173 Cyt-b5: Cytochrome b5 99.6 1.1E-15 2.4E-20 134.6 3.6 74 22-98 1-76 (76)
53 PRK13297 tRNA CCA-pyrophosphor 99.6 1.2E-15 2.7E-20 169.9 4.9 90 838-938 15-113 (364)
54 cd00321 SO_family_Moco Sulfite 99.6 2.5E-15 5.4E-20 151.1 5.5 102 403-519 31-146 (156)
55 KOG0536|consensus 99.6 3.6E-15 7.9E-20 139.8 5.5 76 21-99 68-144 (145)
56 PRK13298 tRNA CCA-pyrophosphor 99.5 3.2E-15 7E-20 170.0 5.9 92 838-938 4-102 (417)
57 cd05398 NT_ClassII-CCAase Nucl 99.5 7.3E-15 1.6E-19 144.8 5.4 100 543-664 20-139 (139)
58 PRK10885 cca multifunctional t 99.5 7.3E-15 1.6E-19 169.0 5.8 93 838-938 4-102 (409)
59 COG2041 Sulfite oxidase and re 99.4 1.6E-13 3.5E-18 149.4 5.8 110 403-531 109-235 (271)
60 KOG2159|consensus 99.4 1.1E-13 2.4E-18 154.2 4.0 95 838-938 32-144 (416)
61 PLN03198 delta6-acyl-lipid des 99.4 5.9E-13 1.3E-17 157.1 6.4 81 16-100 99-179 (526)
62 PLN03199 delta6-acyl-lipid des 99.3 1.1E-12 2.5E-17 154.2 6.8 80 17-101 20-99 (485)
63 COG5274 CYB5 Cytochrome b invo 99.3 1.5E-12 3.3E-17 128.4 5.6 79 19-100 48-127 (164)
64 KOG4232|consensus 98.8 1.3E-09 2.9E-14 121.5 3.7 81 19-104 6-89 (430)
65 PRK03381 PII uridylyl-transfer 98.8 8E-09 1.7E-13 128.3 7.7 89 663-756 314-405 (774)
66 PF12627 PolyA_pol_RNAbd: Prob 98.8 8.7E-09 1.9E-13 87.8 5.3 59 695-756 1-61 (64)
67 TIGR01693 UTase_glnD [Protein- 98.7 1.3E-08 2.9E-13 128.2 7.7 90 662-756 319-413 (850)
68 PRK00275 glnD PII uridylyl-tra 98.7 2.1E-08 4.6E-13 126.3 6.7 104 651-757 338-446 (895)
69 PRK00227 glnD PII uridylyl-tra 98.7 2.6E-08 5.7E-13 121.0 6.7 88 662-756 275-365 (693)
70 PRK03059 PII uridylyl-transfer 98.6 4.5E-08 9.7E-13 122.8 8.6 92 661-757 328-426 (856)
71 PRK05092 PII uridylyl-transfer 98.4 4E-07 8.7E-12 115.8 6.3 87 662-756 384-478 (931)
72 COG4892 Predicted heme/steroid 98.2 2.5E-06 5.4E-11 71.8 5.3 77 20-100 1-78 (81)
73 PHA01806 hypothetical protein 98.1 1.1E-06 2.3E-11 89.1 1.2 27 543-569 39-67 (200)
74 PRK01759 glnD PII uridylyl-tra 98.0 6E-06 1.3E-10 104.0 6.3 89 662-757 326-422 (854)
75 PRK05007 PII uridylyl-transfer 98.0 1.1E-05 2.4E-10 102.1 7.2 93 662-757 350-447 (884)
76 PRK04374 PII uridylyl-transfer 96.9 0.0026 5.6E-08 80.5 9.3 80 675-757 350-435 (869)
77 COG3915 Uncharacterized protei 96.0 0.014 3E-07 56.2 6.0 73 403-510 38-129 (155)
78 KOG1110|consensus 95.5 0.023 5E-07 57.6 5.5 55 17-72 52-109 (183)
79 COG3915 Uncharacterized protei 94.3 0.045 9.8E-07 52.8 3.8 73 170-243 35-130 (155)
80 PF02012 BNR: BNR/Asp-box repe 94.1 0.036 7.8E-07 31.6 1.6 11 330-340 2-12 (12)
81 PF14901 Jiv90: Cleavage induc 84.7 0.63 1.4E-05 42.7 2.2 25 30-54 36-73 (94)
82 PF10648 Gmad2: Immunoglobulin 69.3 31 0.00067 31.5 8.4 65 293-368 3-67 (88)
83 KOG1108|consensus 65.7 5 0.00011 42.5 2.8 54 21-74 60-115 (281)
84 PF12627 PolyA_pol_RNAbd: Prob 59.7 9.2 0.0002 32.2 3.0 35 810-844 5-39 (64)
85 KOG0720|consensus 53.9 7.3 0.00016 45.3 1.8 16 39-54 380-395 (490)
86 PF06594 HCBP_related: Haemoly 46.3 22 0.00049 27.7 3.0 34 308-343 10-43 (43)
87 COG2844 GlnD UTP:GlnB (protein 43.2 63 0.0014 40.7 7.5 82 664-750 338-422 (867)
88 cd00260 Sialidase Sialidases o 41.1 71 0.0015 36.1 7.3 52 292-345 142-193 (351)
89 cd07749 NT_Pol-beta-like_1 Nuc 39.9 42 0.00091 34.0 4.5 37 838-874 20-60 (156)
90 cd02847 Chitobiase_C_term Chit 36.3 49 0.0011 29.6 3.9 37 298-342 13-49 (78)
91 PRK01584 alanyl-tRNA synthetas 26.1 2.3E+02 0.0051 34.9 8.6 15 683-697 309-324 (594)
92 PF03370 CBM_21: Putative phos 25.4 1.1E+02 0.0024 29.1 4.6 73 290-370 8-80 (113)
93 PF05547 Peptidase_M6: Immune 24.7 1.1E+02 0.0024 38.1 5.5 47 325-371 384-432 (645)
94 COG4719 Uncharacterized protei 24.1 41 0.00088 33.6 1.3 51 310-364 101-159 (176)
95 PF13088 BNR_2: BNR repeat-lik 21.7 1.5E+02 0.0034 31.9 5.5 37 308-345 118-154 (275)
96 PF14870 PSII_BNR: Photosynthe 20.5 86 0.0019 35.3 3.2 21 327-347 254-274 (302)
No 1
>KOG0535|consensus
Probab=100.00 E-value=1.9e-74 Score=598.75 Aligned_cols=299 Identities=43% Similarity=0.754 Sum_probs=276.8
Q ss_pred CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHH
Q psy11686 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKL 180 (939)
Q Consensus 112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~ 180 (939)
|+|+.||+|||.|++++.+|||||||++.|.++|+||+++||+|| |+|+|. |++.+ |.+||++||+
T Consensus 7 d~~s~dp~Rhp~Lkv~~k~PFNAE~P~~~L~~~fiTP~~LfyvRNH~pVP~~~~~~~~l~v~-g~~~~-~~~lt~d~l~- 83 (381)
T KOG0535|consen 7 DEYSQDPERHPALKVNSKRPFNAEPPPSLLTEHFITPNPLFYVRNHLPVPKIDPEDYSLEVT-GLGGK-PRKLTLDDLK- 83 (381)
T ss_pred cccccCcccCcceeccCCCCCCCCCChhHHHhhccCCcceeEeeccCCCCccCchhcEEEEE-ecCCC-CceeeHHHhh-
Confidence 788999999999999999999999999999999999999999999 999999 99998 9999999999
Q ss_pred hccc-------eeccccCccCc---------------------cccHHHHHhCCCCC----------------C------
Q psy11686 181 KLVK-------VMAGNISQEDS---------------------KLAAKDIASDPYVM----------------E------ 210 (939)
Q Consensus 181 ~~p~-------~C~gn~~~~~~---------------------~~~~~~vL~~~g~~----------------d------ 210 (939)
++|+ ||+||+|++++ |++++|||+++|+. |
T Consensus 84 s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~~~~a~hV~Fegad~d~tg~pY 163 (381)
T KOG0535|consen 84 SLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSRETKALHVCFEGADDDPTGTPY 163 (381)
T ss_pred hhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcccCcceEEEEeccccCCCCCcc
Confidence 6776 99999997654 44469999999975 1
Q ss_pred CCCcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCC
Q psy11686 211 PVRSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWD 276 (939)
Q Consensus 211 ~~~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~ 276 (939)
+.|||+++||++ |+|||||||++ |||+|+|||| ||||++|.|+.+|+++|||++|||.++|.++++
T Consensus 164 gaSI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDyk~f~psvd~d 243 (381)
T KOG0535|consen 164 GASIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDYKGFSPSVDWD 243 (381)
T ss_pred cccccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhcccccCCCccCcc
Confidence 247999999999 99999999999 9999999999 999999999999999999999999999999999
Q ss_pred CccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCce
Q psy11686 277 TVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHW 356 (939)
Q Consensus 277 ~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~ 356 (939)
+.+|...++|+++||+|+||.|.++..|.+.+++++|+|||||||||+|+|||||+|||+||+.|++++.+.|..+ +.|
T Consensus 244 ~~~w~~~p~iqe~pVqsaIctp~~~~~V~~~~~~vtikGYA~SGGGr~i~RVdvslDgG~tW~v~eldqee~~~~~-~~w 322 (381)
T KOG0535|consen 244 EVDWSSKPSIQELPVQSAICTPEDGLPVKAFDGPVTIKGYAWSGGGRKIIRVDVSLDGGETWNVAELDQEEKPDKY-KFW 322 (381)
T ss_pred ccccccCchhhhcCcceeecccCCCceeccCCCceEEEEEEEeCCCceEEEEEEEecCCceeeeeeccccccCCcc-ceE
Confidence 9999999999999999999999999999876689999999999999999999999999999999999998876322 789
Q ss_pred eEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCccccCCC
Q psy11686 357 GWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPV 436 (939)
Q Consensus 357 ~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~ 436 (939)
||++|+++++++++..+
T Consensus 323 ~W~lw~a~v~V~~~~~~--------------------------------------------------------------- 339 (381)
T KOG0535|consen 323 AWCLWSAEVPVSDGQKE--------------------------------------------------------------- 339 (381)
T ss_pred EEEEEEecccccccchh---------------------------------------------------------------
Confidence 99999999998775421
Q ss_pred CCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecceeeEE
Q psy11686 437 KGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRV 516 (939)
Q Consensus 437 ~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~~~~~~ 516 (939)
+.+++||+|+.+|.||...++.||||+|+.|.||++
T Consensus 340 --------------------------------------------~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV 375 (381)
T KOG0535|consen 340 --------------------------------------------KNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRV 375 (381)
T ss_pred --------------------------------------------hhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEE
Confidence 445689999999999999999999999999999999
Q ss_pred EEEEe
Q psy11686 517 RVEIW 521 (939)
Q Consensus 517 ~i~~~ 521 (939)
++.|.
T Consensus 376 ~~~v~ 380 (381)
T KOG0535|consen 376 KVNVC 380 (381)
T ss_pred Eeeec
Confidence 98875
No 2
>PLN00177 sulfite oxidase; Provisional
Probab=100.00 E-value=3.9e-61 Score=542.27 Aligned_cols=296 Identities=33% Similarity=0.543 Sum_probs=264.2
Q ss_pred CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee------------EEEEEeecccCCcceeeeHHHHH
Q psy11686 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS------------STITLDQAIVSKQLSSFKHSDEK 179 (939)
Q Consensus 112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~------------w~l~v~~G~v~~~p~~~t~~dl~ 179 (939)
.++..+|.|++.|++++.+|+|+|||++.|.+++|||+++||+|| |+|+|+ |+|++ |++||++||+
T Consensus 8 ~~~~~~p~r~~~l~~~~~~P~n~E~p~~~L~~~~iTP~~~ffvR~h~~~P~~~d~~~w~L~V~-G~V~~-p~~ltl~dL~ 85 (393)
T PLN00177 8 SDYSQEPPRHPSLKINAKEPFNAEPPRSALVSSYITPVDLFYKRNHGPIPIVDDIERYSVTIT-GLIEN-PRKLSMKDIR 85 (393)
T ss_pred CccccCCCCCCceEECCCCCCcCCCChHHhccCCcCCCcceEEECCCCCCCcCCCCceEEEEE-eecCC-CeEeeHHHHh
Confidence 678899999999999999999999999999889999999999998 999999 99998 9999999999
Q ss_pred Hhccc-------eeccccCc---------------------cCccccHHHHHhCCCCC------------------C---
Q psy11686 180 LKLVK-------VMAGNISQ---------------------EDSKLAAKDIASDPYVM------------------E--- 210 (939)
Q Consensus 180 ~~~p~-------~C~gn~~~---------------------~~~~~~~~~vL~~~g~~------------------d--- 210 (939)
+||+ +|+||+|+ +|+|++++|||++||++ |
T Consensus 86 -~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g~d~~~ 164 (393)
T PLN00177 86 -KLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVSVDKCK 164 (393)
T ss_pred -cCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEEecccc
Confidence 8999 99999864 56677789999999972 1
Q ss_pred -------CCCcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCcc
Q psy11686 211 -------PVRSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGF 269 (939)
Q Consensus 211 -------~~~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~ 269 (939)
..||||++|+++ |+|||||||++ |||||||||| ||||++|+|++++++||||+++|+++
T Consensus 165 ~~~~~~y~~sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~~Y~~~ 244 (393)
T PLN00177 165 EENGGPYKASIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKDYKMF 244 (393)
T ss_pred ccCCCCcEEeEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceecccccC
Confidence 125999999974 99999999999 9999999999 99999999999999999999999999
Q ss_pred CCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCC-
Q psy11686 270 SPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDS- 348 (939)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~- 348 (939)
++..+.....|.+.++|++|+|||+||.|.+++.++ .++++|+||||||+|++|+|||||+|||+||++|+|..+..
T Consensus 245 ~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~--~g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~~~ 322 (393)
T PLN00177 245 PPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIK--PGKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKPGV 322 (393)
T ss_pred CCCCCccccCccccCcceeecCCeEEecCCCCCccc--CceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeecccccc
Confidence 888877766777788999999999999999999997 57899999999998889999999999999999999975421
Q ss_pred ----CCCCCCceeEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCC
Q psy11686 349 ----QAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCAR 424 (939)
Q Consensus 349 ----~~~~~~~~~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cag 424 (939)
.....++|+|++|+++|.. ++.
T Consensus 323 ~~~~~~~~~~~~aW~~w~~~~~~-~g~----------------------------------------------------- 348 (393)
T PLN00177 323 PYISDDISSDKWAWVLFEATVDV-PQS----------------------------------------------------- 348 (393)
T ss_pred ccccccccCCccEEEEEEEEecC-CCC-----------------------------------------------------
Confidence 1123578999999999852 222
Q ss_pred CCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCC
Q psy11686 425 MNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWN 504 (939)
Q Consensus 425 n~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p 504 (939)
.+++++|+|..+|.||......||
T Consensus 349 --------------------------------------------------------~~l~~RA~D~~G~~QP~~~~~~wN 372 (393)
T PLN00177 349 --------------------------------------------------------TEIVAKAVDSAANVQPESVESIWN 372 (393)
T ss_pred --------------------------------------------------------eEEEEEEEcCCCCCCCCCCcCCcC
Confidence 445689999999999998777899
Q ss_pred cceeecceeeEEEEEEec
Q psy11686 505 LRGVLSNAYHRVRVEIWS 522 (939)
Q Consensus 505 ~R~vvp~~~~~~~i~~~~ 522 (939)
+|+++.|+|++++|+|..
T Consensus 373 ~~Gy~~n~~~rv~v~v~~ 390 (393)
T PLN00177 373 LRGILNTSWHRVQLRVGH 390 (393)
T ss_pred CCCcccccEEEEEEEEee
Confidence 999999999999998854
No 3
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=5.1e-58 Score=514.35 Aligned_cols=244 Identities=44% Similarity=0.737 Sum_probs=218.5
Q ss_pred cccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc-------e
Q psy11686 124 LKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK-------V 185 (939)
Q Consensus 124 l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~ 185 (939)
|++++.+|+|+|||++.|.+++|||++.||+|| |+|+|+ |+|++ |++||++||++.||+ +
T Consensus 2 l~~~~~~P~n~E~p~~~l~~~~iTP~~~~yvr~h~~~P~~d~~~w~L~V~-G~V~~-p~~ltl~dL~~~~p~~~~~~~l~ 79 (365)
T cd02111 2 LKVNSKKPFNAEPPSSLLASSFITPNELFYVRNHLPVPVVDPDTYSLEVE-GPDGT-TLSLSLEDLKSLFPKHEVTATLQ 79 (365)
T ss_pred ceEcCCCCCcCCCChHHhCcCCcCCCCceEEECCCCCCccCccccEEEEE-eecCC-CcEEeHHHHHhhCCcEEEEEEEE
Confidence 578899999999999999978999999999998 999999 99998 999999999944599 9
Q ss_pred eccccC---------------------ccCccccHHHHHhCCCCCC---------------------C--CCcchhhhcC
Q psy11686 186 MAGNIS---------------------QEDSKLAAKDIASDPYVME---------------------P--VRSPLLKATS 221 (939)
Q Consensus 186 C~gn~~---------------------~~~~~~~~~~vL~~~g~~d---------------------~--~~ipl~~a~~ 221 (939)
|+||+| .+|+|++++|||++||+++ . .||||++||+
T Consensus 80 C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~~~~a~~V~~~~~d~~~~~~~y~~sipl~~a~~ 159 (365)
T cd02111 80 CAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDDSQGGLHVHFEGLDVDPTGTPYGASIPLSKALD 159 (365)
T ss_pred ecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCccCCCceEEEEEecCCCCCCCCeeeeeEHHHhhC
Confidence 999975 4567788999999999752 2 2599999998
Q ss_pred --C-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCccCCCCCCcc
Q psy11686 222 --L-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQ 287 (939)
Q Consensus 222 --~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~ 287 (939)
+ |+|||||||++ |||||||||| ||||++|+|++++++||||++||+++++..+.....|.+..+|+
T Consensus 160 p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~ 239 (365)
T cd02111 160 PEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDYKGFSPSVDWDNVDFSKAPAIQ 239 (365)
T ss_pred cCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecceeecCCCCCccccCccccCcee
Confidence 3 99999999999 9999999999 99999999999999999999999998777766555677778999
Q ss_pred cccceEEEEecCCCCe---eccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEE
Q psy11686 288 ELPVISAICLPVADAK---LKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRAT 364 (939)
Q Consensus 288 ~~~v~S~I~~P~~~~~---~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~ 364 (939)
+|++||+|+.|.+|+. +. ++.++|+||||+|||++|+|||||+|||+||++|+|.++..+.+++++|||++|+++
T Consensus 240 ~~~v~S~I~~P~~~~~~~~~~--~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~ 317 (365)
T cd02111 240 EMPVQSAICSPSVGAPVVTVP--PGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEAT 317 (365)
T ss_pred eeccCEEEecCCCCCeeeccC--CceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEE
Confidence 9999999999999984 33 579999999999888899999999999999999999988765556778999999999
Q ss_pred eecCCCC
Q psy11686 365 IPVDPKT 371 (939)
Q Consensus 365 ~~~~~~~ 371 (939)
|++++++
T Consensus 318 ~~~~~~g 324 (365)
T cd02111 318 VPVPAGK 324 (365)
T ss_pred EEeCCCC
Confidence 9887654
No 4
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=7.5e-57 Score=552.69 Aligned_cols=310 Identities=29% Similarity=0.474 Sum_probs=264.9
Q ss_pred Ccc-ccccccCCCCCCCCCCCcccc-ccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc--
Q psy11686 120 RSP-LLKATSLKPYNAEPPPSMLVE-NFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK-- 184 (939)
Q Consensus 120 r~p-~l~v~~~~P~n~e~p~~~l~~-~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-- 184 (939)
|+| ++++++.+|||+|||++.|.+ ++|||+++||||| |+|+|+ |+|++ |++|||+||+ +||+
T Consensus 84 r~~~li~~~~~~P~n~E~p~~~L~~~~~iTP~~~~yVRnH~~vP~~~~~~w~l~V~-G~V~~-p~~ltl~dL~-~~p~~~ 160 (888)
T PLN02252 84 RHPSLVRLTGKHPFNCEPPLARLMEHGFITPAPLHYVRNHGAVPRADWDEWTVEVT-GLVKR-PARLTMDELV-RFPARE 160 (888)
T ss_pred CCccceEEcCCCCCcCCCChHHhccCCCcCCCcceEEECCCCCCccCCCCeEEEEe-eecCC-CeEeeHHHHh-hCCCee
Confidence 555 668888999999999999984 7999999999999 999999 99998 9999999999 6999
Q ss_pred -----eeccccCc---------------------cCccccHHHHHhCCCCC--------------C----------CCCc
Q psy11686 185 -----VMAGNISQ---------------------EDSKLAAKDIASDPYVM--------------E----------PVRS 214 (939)
Q Consensus 185 -----~C~gn~~~---------------------~~~~~~~~~vL~~~g~~--------------d----------~~~i 214 (939)
+|+||+|+ .|+|++++|||+.||+. | .+||
T Consensus 161 ~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~~~~a~~V~f~g~d~~~~~~~~~y~~si 240 (888)
T PLN02252 161 LPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSRKGGALNVCFEGAEDLPGGGGSKYGTSI 240 (888)
T ss_pred EEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCCCCCceEEEEEcccccccCCCCCceeee
Confidence 99999985 46788899999999974 1 1469
Q ss_pred chhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCc--
Q psy11686 215 PLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTV-- 278 (939)
Q Consensus 215 pl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~-- 278 (939)
||++||++ |+|||||||++ |||||||||| ||||++|+|++++++||||.++|+++|+.++.+..
T Consensus 241 pl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~~~ 320 (888)
T PLN02252 241 TLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDNRVLPSHVDAELANA 320 (888)
T ss_pred eHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeecccccCCCccccccccc
Confidence 99999984 99999999999 9999999999 99999999999999999999999998877654322
Q ss_pred -cC--CCCCCcccccceEEEEecCCCCeeccC----CcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCC
Q psy11686 279 -DF--AKSPAIQELPVISAICLPVADAKLKLE----NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP 351 (939)
Q Consensus 279 -~~--~~~~~i~~~~v~S~I~~P~~~~~~~~~----~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~ 351 (939)
.| ....+|++|+|||+|+.|.+++.+.+. +++++|+||||+|||++|+|||||+|||+||+.|+|..+..+..
T Consensus 321 ~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~ 400 (888)
T PLN02252 321 EGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTK 400 (888)
T ss_pred ccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEECCCCCceEEEEEEcCCCCcceeCccCCCCCccc
Confidence 22 234589999999999999999999753 46899999999999999999999999999999999998876656
Q ss_pred CCCceeEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCcc
Q psy11686 352 LTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENF 431 (939)
Q Consensus 352 ~~~~~~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~ 431 (939)
+++.|||++|+++|++++..+.
T Consensus 401 ~g~~~~W~~W~~~~~~~~~~g~---------------------------------------------------------- 422 (888)
T PLN02252 401 YGKYWCWCFWSLDVEVLDLLGA---------------------------------------------------------- 422 (888)
T ss_pred cCCccEEEEEEEeEecccCCCc----------------------------------------------------------
Confidence 6778999999999986432110
Q ss_pred ccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecc
Q psy11686 432 EVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSN 511 (939)
Q Consensus 432 ~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~ 511 (939)
..++++|+|..+|.||... .||+|+++.|
T Consensus 423 -------------------------------------------------~~i~vRA~D~~g~~QP~~~--~wN~~G~~nN 451 (888)
T PLN02252 423 -------------------------------------------------KEIAVRAWDESMNTQPEKL--IWNLMGMMNN 451 (888)
T ss_pred -------------------------------------------------eEEEEEEEcCCCCcCCCCC--ccCcCceEEe
Confidence 4456899999999999864 6999999999
Q ss_pred eeeEEEEEEecCCc-----CceeecCCCCCCCCCCc
Q psy11686 512 AYHRVRVEIWSKAV-----DSSYNTQPENGHPSGYQ 542 (939)
Q Consensus 512 ~~~~~~i~~~~~~~-----~~~y~~~~~~~~~~~~~ 542 (939)
.|++++|+|..... ...+.+.|+.+ +++||
T Consensus 452 ~~~rv~v~v~~~~~~~~~~~f~hp~~~~~~-~ggwm 486 (888)
T PLN02252 452 CWFRVKVNVCKPHKGEIGLVFEHPTQPGNQ-SGGWM 486 (888)
T ss_pred eEEEEEEEEeeccCCcceEEEeCCCCccCC-CCCcc
Confidence 99999999865432 44555677665 34554
No 5
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.4e-56 Score=504.84 Aligned_cols=247 Identities=26% Similarity=0.426 Sum_probs=213.9
Q ss_pred Ccccc-ccccCCCCCCCCCCCcc-ccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc--
Q psy11686 120 RSPLL-KATSLKPYNAEPPPSML-VENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK-- 184 (939)
Q Consensus 120 r~p~l-~v~~~~P~n~e~p~~~l-~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-- 184 (939)
|+|.+ ++++.+|+|+|||++.| .+++|||+++||+|| |+|+|+ |+|++ |++||++||++.||+
T Consensus 11 r~~~li~~~~~~p~n~e~p~~~l~~~~~iTP~~~~yvr~h~~~P~id~~~w~L~V~-G~V~~-p~~ltl~dL~~~~p~~~ 88 (386)
T cd02112 11 RDPRLIRLTGKHPFNSEPPLTELMDHGFITPSNLHYVRNHGPVPREKWEDWTVEVT-GLVEK-PTTLTMDELVAMFPSVT 88 (386)
T ss_pred CCcceEEEcCCCCCcCCCChHHhcccCCcCCccceEEEcCCCCCcccCCCcEEEEE-eecCC-CeEEeHHHHHhcCCceE
Confidence 77755 77777999999999986 468999999999998 999999 99998 999999999943598
Q ss_pred -----eeccccCc---------------------cCccccHHHHHhCCCCCC---C-------------------C--Cc
Q psy11686 185 -----VMAGNISQ---------------------EDSKLAAKDIASDPYVME---P-------------------V--RS 214 (939)
Q Consensus 185 -----~C~gn~~~---------------------~~~~~~~~~vL~~~g~~d---~-------------------~--~i 214 (939)
+|+||+|+ +|+|++++|||++||+.. . + ||
T Consensus 89 ~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~~~a~~V~~~g~D~~~~~~~~~y~~sl 168 (386)
T cd02112 89 FPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPKGGARHVCFEGADDLLPGPNGKYGTSI 168 (386)
T ss_pred EEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCccCCceEEEEEccCcccccCCCCcEeee
Confidence 99999874 678888999999999753 1 2 69
Q ss_pred chhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCcc-
Q psy11686 215 PLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVD- 279 (939)
Q Consensus 215 pl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~- 279 (939)
||++||++ |+|||||||++ |||||||||| ||||++|+|++++++||||+.+|+++++..+.....
T Consensus 169 pl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 248 (386)
T cd02112 169 TLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHDNRVLPSHVDAELANE 248 (386)
T ss_pred EHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecccccCCcccCcccccc
Confidence 99999983 99999999999 9999999999 999999999999999999999999987665443221
Q ss_pred ---CC-CCCCcccccceEEEEecCCCCeec----cCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCC
Q psy11686 280 ---FA-KSPAIQELPVISAICLPVADAKLK----LENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP 351 (939)
Q Consensus 280 ---~~-~~~~i~~~~v~S~I~~P~~~~~~~----~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~ 351 (939)
|. ...+|++|+|+|+|+.|.+++.+. ..+++++|+||||||+|++|+|||||+|||+||++|+|.++..+..
T Consensus 249 ~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG~tW~~A~L~~~~~~~~ 328 (386)
T cd02112 249 EGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDGKSWKLASIDYPEDPTK 328 (386)
T ss_pred ccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCCCCceeCCCCCCCCccc
Confidence 33 345899999999999999999982 1267999999999998889999999999999999999987665434
Q ss_pred CCCceeEEEeEEEeecC
Q psy11686 352 LTRHWGWTLWRATIPVD 368 (939)
Q Consensus 352 ~~~~~~W~~W~~~~~~~ 368 (939)
++++|||++|+++|+++
T Consensus 329 ~~~~~aW~~W~~~~~~~ 345 (386)
T cd02112 329 YGKCWCWCFWSLDVPLS 345 (386)
T ss_pred cCCCCEeEEEEEeeecc
Confidence 45689999999999765
No 6
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=6.6e-56 Score=497.66 Aligned_cols=247 Identities=22% Similarity=0.288 Sum_probs=213.3
Q ss_pred CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-------------EEEEEeecccCCcceeeeHHHH
Q psy11686 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-------------STITLDQAIVSKQLSSFKHSDE 178 (939)
Q Consensus 112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-------------w~l~v~~G~v~~~p~~~t~~dl 178 (939)
.+....|.++++++++ .+|+|+|+|++.|.+++|||++.||+|| |+|+|+ |+|++ |++||++||
T Consensus 8 ~~~~~~~~~~~li~~~-~~p~n~e~p~~~l~~~~iTP~~~~fvr~h~~~~p~~~d~~~w~L~V~-G~V~~-p~~~tl~dL 84 (367)
T cd02114 8 RELVPFPQKRPLIRLT-TRPPHLETPFSVFNEGLITPNDAFFVRYHLAGIPLDIDPDAYTLTID-GKVRT-PLTLSLAEL 84 (367)
T ss_pred cccccCCCCCCceEec-CCCCcCCCCHHHhCcCCcCCCCcceEEcCCCCCCccccCCCcEEEEe-EEeCC-CeEEEHHHH
Confidence 3445567788877666 4899999999999888999999999997 999999 99998 999999999
Q ss_pred HHhccc-------eeccccC-------------------ccCccccHHHHHhCCCCC-----------CC----------
Q psy11686 179 KLKLVK-------VMAGNIS-------------------QEDSKLAAKDIASDPYVM-----------EP---------- 211 (939)
Q Consensus 179 ~~~~p~-------~C~gn~~-------------------~~~~~~~~~~vL~~~g~~-----------d~---------- 211 (939)
++.||+ +|+||+| .+|+|+++++||++||+. |.
T Consensus 85 ~~~~p~~~~~~~l~C~gN~r~~~~~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~~a~~V~f~g~D~~~~~~~~~y~ 164 (367)
T cd02114 85 KRIEPRFEVVAVNQCSGNSRGFFQPRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQDGARQVAFRGLDQPVLDVTPDFV 164 (367)
T ss_pred hhcCCceEEEEEEEECCCCcccccccccCCCcccceEEeeEEEeeEHHHHHHHcCCCCCCcEEEEEecCCccccCCCCeE
Confidence 943598 9999976 367889999999999975 21
Q ss_pred CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCC-C-C
Q psy11686 212 VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDW-D-T 277 (939)
Q Consensus 212 ~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~-~-~ 277 (939)
.||||++|+++ |+|||||||++ |||||||||| ||||++|+|++++++||||+++|+++++.... . .
T Consensus 165 ~sipl~~a~~~~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~g 244 (367)
T cd02114 165 KSLDIDHALDGEVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRIPDNADAGVEPG 244 (367)
T ss_pred EeeeHHHhcCCCeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeecccccCCCcccccCCc
Confidence 36999999987 99999999999 9999999999 99999999999999999999999986543111 1 1
Q ss_pred ccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCcee
Q psy11686 278 VDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWG 357 (939)
Q Consensus 278 ~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~ 357 (939)
..+.+..+|++|+|||+|+.|.+|+.+.. +++++|+||||+| |++|+|||||+|||+||++|+|.++. ++|+
T Consensus 245 ~~~~~~~~i~~~~v~S~I~~P~~~~~~~~-~~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l~~~~------~~~a 316 (367)
T cd02114 245 TAPDRTAPINRFKVRSFITSLENGAIVAP-AGELALRGIAFDG-GSGIRRVDVSADGGDSWTQATLGPDL------GRFS 316 (367)
T ss_pred ccccccceeeeeecceEEecCCCCCEecC-CCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEeCCCC------CCcE
Confidence 11335679999999999999999998875 6799999999998 56899999999999999999997754 5799
Q ss_pred EEEeEEEeecCC
Q psy11686 358 WTLWRATIPVDP 369 (939)
Q Consensus 358 W~~W~~~~~~~~ 369 (939)
|++|+++|+++.
T Consensus 317 W~~W~~~~~~~~ 328 (367)
T cd02114 317 FRGWKLTLDGVK 328 (367)
T ss_pred EEEEEEEEECCC
Confidence 999999998764
No 7
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.1e-50 Score=445.03 Aligned_cols=233 Identities=24% Similarity=0.263 Sum_probs=205.0
Q ss_pred CCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc------
Q psy11686 137 PPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ------ 192 (939)
Q Consensus 137 p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~------ 192 (939)
|++.| +++|||++.||+|| |+|+|+ |+|++ |++||++||+ +||+ +|+||+|+
T Consensus 1 p~~~l-~~~iTP~~~~fvr~h~~~P~~d~~~w~L~V~-G~V~~-p~~ltl~dL~-~~p~~~~~~~l~C~gn~r~~~~~~~ 76 (326)
T cd02113 1 PLQDL-EGIITPNGLHFERHHGGVPDIDPAQHRLMIH-GMVKK-PLVFTMDDLK-RFPSVSRIYFLECSGNGGTGWRGAP 76 (326)
T ss_pred Chhhc-cCCcCCCcceEEECCCCCCccCccccEEEEE-EecCC-CeEeeHHHHh-cCCCEEEEEEEEecCCCcccccccc
Confidence 34556 47999999999998 999999 99998 9999999999 8999 99999875
Q ss_pred --------------cCccccHHHHHhCCCCCC-----------C----CCcchhhhcCC----CCCCCCCCCCC-CCCce
Q psy11686 193 --------------EDSKLAAKDIASDPYVME-----------P----VRSPLLKATSL----KPYNAEPPPSM-LYSSL 238 (939)
Q Consensus 193 --------------~~~~~~~~~vL~~~g~~d-----------~----~~ipl~~a~~~----~~mNGepLp~~-G~PlR 238 (939)
.|+|++++|||+.||+++ . .||||++|+++ |+|||||||++ |||||
T Consensus 77 ~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~~a~~V~~~g~D~~~y~~sipl~~a~~~~lLAy~mNGepL~~~hG~PlR 156 (326)
T cd02113 77 LPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKPGAKWLLAEGADAAAMTRSIPLEKALDDALVAYAQNGEALRPENGYPLR 156 (326)
T ss_pred cccccccccceeEEEEEeeEHHHHHHhcCCCCCceEEEEEecCCCceeEEeeHHHhCcCcEEEEeeCCeECChhhCceEE
Confidence 456777899999999862 1 36999999965 99999999999 99999
Q ss_pred EeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEE
Q psy11686 239 LRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQME 312 (939)
Q Consensus 239 lvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~ 312 (939)
||||| ||||++|+|+++++++|||+.+|+..++... ...++++|++||+|+.|.+++.+.. +++++
T Consensus 157 lvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~~~-------~~~~~~~~~v~S~I~~P~~~~~~~~-~~~~~ 228 (326)
T cd02113 157 LVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPDGR-------ARQFSFVMEAKSVITSPSGGQRLRE-PGFHE 228 (326)
T ss_pred EEeCCccceeCceEeeEEEEEecccCCchhhccccccCCCCc-------ccccceEecccEEEecCCCCCEecC-CCeEE
Confidence 99999 9999999999999999999999997554322 1246789999999999999999964 67999
Q ss_pred EEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecCCCCce--eeeeecccCCCCCCc
Q psy11686 313 VQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKE--VSIMDMLMGKKPHDI 388 (939)
Q Consensus 313 i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~~~~~--vra~d~~~~~~p~~~ 388 (939)
|+||||+|++ +|+|||||+|||+||++|+|.++. ++|+|++|++.|.++.+.++ +||+|..++.||..-
T Consensus 229 i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~~------~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~QP~~~ 299 (326)
T cd02113 229 ISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGPV------LPKALTRFRLPWKWDGRPAVLQSRATDETGYVQPTRA 299 (326)
T ss_pred EEEEEECCCC-CEEEEEEEcCCCCCceECccCCCC------CCCceEEEeEEEEcCCCeEEEEEEEEcCCCCCCCCCc
Confidence 9999999965 599999999999999999998876 46999999999987665554 899999999999863
No 8
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=100.00 E-value=2.1e-47 Score=423.21 Aligned_cols=220 Identities=28% Similarity=0.415 Sum_probs=191.9
Q ss_pred EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc-------------------cCccccHHHHHhCCCCC-
Q psy11686 157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ-------------------EDSKLAAKDIASDPYVM- 209 (939)
Q Consensus 157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~-------------------~~~~~~~~~vL~~~g~~- 209 (939)
|+|+|+ |+|++ |++||++||+ +||+ +|+||+|. +|+|++++|||+.||+.
T Consensus 18 w~L~V~-G~v~~-p~~~tl~dL~-~lp~~~~~~~l~C~gn~r~~~~~~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~ 94 (317)
T cd02110 18 WRLEIH-GLVER-PLTLTLDDLK-RLPSVEVVATLECSGNGRGGFIPVRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKP 94 (317)
T ss_pred cEEEEE-eeeCC-CcEEeHHHHh-hCCCeeEEEEEEcCCCCcccccccccCCccccCceeecEEECcCHHHHHHHhCCCC
Confidence 999999 99998 9999999999 8999 99999765 46788899999999985
Q ss_pred ----------C--------C--CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCC
Q psy11686 210 ----------E--------P--VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHES 257 (939)
Q Consensus 210 ----------d--------~--~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~ 257 (939)
| . .+|||++|+++ |+|||||||++ |||||||||| ||||++|+|++++.
T Consensus 95 ~a~~V~~~~~D~~~~~~~~~Y~~sipl~~~~~~~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~ 174 (317)
T cd02110 95 GAKHVLFEGADVPPGEKAADYTRSVPLSKALDDDALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPS 174 (317)
T ss_pred CCcEEEEEccCcccccCCCCeEEEEEHHHhcCCCcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCC
Confidence 2 2 25999999976 99999999999 9999999999 99999999999999
Q ss_pred CCcccccCCCccCCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCC
Q psy11686 258 TSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRT 337 (939)
Q Consensus 258 ~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~t 337 (939)
+||||++||+++++..+. .++....++++|++||+|+.|.+++.+.. +++++|+||||+| |++|+|||||+|||+|
T Consensus 175 ~g~w~~~~Y~~~~~~~~~--~~~~~~~~~~~~~~~s~I~~p~~~~~~~~-~~~~~i~G~A~~g-~~~I~rVEvS~DgG~t 250 (317)
T cd02110 175 DGYWQTRDYTVPPPDVDA--VGGKARRPIGEMPVKSVITSPSPGAELVS-GGRVEIGGVAWSG-GRGIRRVEVSLDGGRT 250 (317)
T ss_pred CCceEccccccCCCcccc--cCCCccceeEEEccCEEEeccCCCCEecC-CCeEEEEEEEEcC-CCCEEEEEEEeCCCCc
Confidence 999999999998776543 33455679999999999999999976654 6799999999998 5789999999999999
Q ss_pred eEEeeeCCCCCCCCCCCceeEEEeEEEeecCCCCce--eeeeecccCCCCCCc
Q psy11686 338 WHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKE--VSIMDMLMGKKPHDI 388 (939)
Q Consensus 338 W~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~~~~~--vra~d~~~~~~p~~~ 388 (939)
|++|+|.++. .+.|+|++|+++|++++|.++ +||+|..+++||...
T Consensus 251 W~~A~l~~~~-----~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP~~~ 298 (317)
T cd02110 251 WQEARLEGPL-----AGPRAWRQWELDWDLPPGEYELVARATDSTGNVQPERA 298 (317)
T ss_pred ceEeEccCCc-----CCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCCCcc
Confidence 9999998765 257999999999998876653 677777777777643
No 9
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=100.00 E-value=2.4e-38 Score=360.02 Aligned_cols=188 Identities=26% Similarity=0.324 Sum_probs=164.1
Q ss_pred ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL 614 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~ 614 (939)
-++++.||++ |+++|+|+||+|++.|+ ++.++|+.. +++|..|++++ ++|+
T Consensus 70 YLVGG~VRDlLLG~~pkD~DIaT~A~pe----------------ev~~lf~~~-----r~iGrrF~~~hV~~~~~~iEVa 128 (472)
T PRK11623 70 YLVGGGVRDLLLGKKPKDFDVTTNATPE----------------QVRKLFRNC-----RLVGRRFRLAHVMFGPEIIEVA 128 (472)
T ss_pred EEeChHHHHHHcCCCCCCEEEecCCCHH----------------HHHHHhhhC-----eeecCCCCEEEEEECCceEEEe
Confidence 4788899998 79999999999999999 777777643 34455666544 5799
Q ss_pred eeccCCCC---------------------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCc
Q psy11686 615 SYRNRREK---------------------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDP 673 (939)
Q Consensus 615 tfr~~~~~---------------------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~ 673 (939)
|||.+..+ ..++++||.|||||||||||++ .+++|+|||||++||++|+||+||+|
T Consensus 129 TfR~~~~~~~~~~~~~~~~~~g~~~rdn~~gtieeDl~RRDFTINALayd~---~~~~IiD~~gG~~DLk~riLR~IGdp 205 (472)
T PRK11623 129 TFRGHHEGNESDRNTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSV---ADFTVRDYVGGMKDLKEGVIRLIGNP 205 (472)
T ss_pred ccccccccccccccccccCCCCceecccCCCCHHHHHHhccccHHHheecC---CCCeEecCCCCHHHHhCCceeecCCh
Confidence 99975321 1389999999999999999997 57899999999999999999999999
Q ss_pred cccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--c
Q psy11686 674 VSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--L 751 (939)
Q Consensus 674 ~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--l 751 (939)
..||.|||+|||||+|||++|||+ |+++|.++|++++.+|.++|+|||++|+.|||.++++...+..|.+.+++ |
T Consensus 206 ~~rf~EDPlRmLRAvRFAArLgF~---Ie~~T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~l 282 (472)
T PRK11623 206 ETRYREDPVRMLRAVRFAAKLDMR---ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPL 282 (472)
T ss_pred HhhcccchHHHHHHHHHHHHhCCC---cCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999997 99999999999999999999999999999999999988888777776665 7
Q ss_pred cccccc
Q psy11686 752 FSKLKA 757 (939)
Q Consensus 752 fp~l~~ 757 (939)
||++..
T Consensus 283 fPel~~ 288 (472)
T PRK11623 283 FPTITR 288 (472)
T ss_pred hHhHHH
Confidence 998764
No 10
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=6.9e-38 Score=356.59 Aligned_cols=243 Identities=24% Similarity=0.318 Sum_probs=192.1
Q ss_pred ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL 614 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~ 614 (939)
-++++.||++ +++++.|+||++++.++ ++.++|+.... ++..||+++ ++++
T Consensus 24 ylVGG~VRD~LLg~~~~DiDi~~~~~~~----------------~~~~~~~~~~~-----~g~~~gt~~v~~~~~~~ei~ 82 (394)
T PRK13299 24 YFVGGSVRDYLLGRPIHDVDIATSAYPE----------------EVKAIFPRTVD-----VGIEHGTVLVLENGEEYEVT 82 (394)
T ss_pred eeccchHHHHHcCCCCCCEEEecCCCHH----------------HHHHHhhhhhh-----ccccCCEEEEEECCEEEEEE
Confidence 4678889997 69999999999988887 55566554333 244456554 4689
Q ss_pred eeccCCCCC-----------CCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686 615 SYRNRREKE-----------DRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR 683 (939)
Q Consensus 615 tfr~~~~~~-----------~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR 683 (939)
|||.+..+. .++++||.||||||||||+++ +|.|+|||||++||++|+||++|+|.+||.|||+|
T Consensus 83 t~R~e~~~~d~~~p~~~~~~~~i~eDl~RRDFTINAma~~~----~g~liDpf~G~~DL~~~~iR~v~~~~~~f~eDplR 158 (394)
T PRK13299 83 TFRTESEYVDYRRPSEVTFVRSLEEDLKRRDFTINAIAMDE----NGEIIDLFDGLEDLKNRLIRAVGNAEERFQEDALR 158 (394)
T ss_pred eeccccCccCCCCCccccCCCCHHHHHHhccccHHHhhcCC----CCCEeeCCCCHHHHhCCceeecCCHHHhhccCHHH
Confidence 999864332 389999999999999999996 69999999999999999999999998899999999
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc-ccccccchhhHH
Q psy11686 684 ILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL-LFSKLKATTMRE 762 (939)
Q Consensus 684 ilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l-lfp~l~~~~~~~ 762 (939)
||||+||++||||+ |+++|+++|++++..|.++|+|||+.||.|||.++++...+..|.+.+++ .||++.... .
T Consensus 159 iLRa~Rfaa~l~f~---i~~~t~~~i~~~~~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~~p~l~~~~--~ 233 (394)
T PRK13299 159 MMRAVRFASQLGFD---LETETFEAMKTQAPLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNYLPGLKGKE--E 233 (394)
T ss_pred HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHhCcccccch--H
Confidence 99999999999997 99999999999999999999999999999999999887777766665554 588886543 1
Q ss_pred HHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHHHh
Q psy11686 763 YIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAI 817 (939)
Q Consensus 763 ~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai 817 (939)
.+..+..+.... ..+....|...++.+..+...++++||.++. +..+.+...+
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~a~ll~~~~~~~~~~~l~rl~ls~-~~~~~i~~li 286 (394)
T PRK13299 234 NLLKLTQLLWFS-FETSEQAWAALLISLKIENIKSFLKAWKLSN-KFIKDVVKLL 286 (394)
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHhcCHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 223333332211 1123346777766666788899999999998 5655555554
No 11
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=100.00 E-value=3.6e-37 Score=346.78 Aligned_cols=187 Identities=25% Similarity=0.299 Sum_probs=163.1
Q ss_pred ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL 614 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~ 614 (939)
-+++..||++ |+++++|+||+|++.|+ +++++|+.. +++|++|++++ ++|+
T Consensus 33 YlVGG~VRDlLLG~~pkD~DIat~a~pe----------------ei~~lf~~~-----~~iG~rf~~~~v~~~~~~iEva 91 (410)
T TIGR01942 33 YIVGGAVRDLLLGIEPKDFDVVTSATPE----------------EVRKLFRNS-----RIVGRRFRLVHVSFGRQIIEVA 91 (410)
T ss_pred EEECHHHHHHHcCCCCCCEEEEcCCCHH----------------HHHHHhhhC-----eecCCCCCEEEEEECCEEEEEe
Confidence 4778899998 79999999999999999 777777643 34566666654 5799
Q ss_pred eeccCCC---C----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhch
Q psy11686 615 SYRNRRE---K----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDY 681 (939)
Q Consensus 615 tfr~~~~---~----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDP 681 (939)
|||.... . ..++++||.|||||||||||++ .+++|+|||||++||++|+||++|+|..||.|||
T Consensus 92 tfR~~~~~~~~~~g~~~~d~~~gtieeDl~RRDFTINALayd~---~~~~IiD~~gG~~DL~~~~LR~igdp~~rf~EDP 168 (410)
T TIGR01942 92 TFRSGHKSSVNAEGRILKDNVYGTLEEDAWRRDFTVNALYYDP---SREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDP 168 (410)
T ss_pred cccccccCCCCCCCCcccccccCCHHHHhhcCCchhhheeecC---CCCeeeCCCCcHHHHHCCceeecCChhhcccccH
Confidence 9997321 0 1488999999999999999997 6789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686 682 LRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 682 lRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~ 756 (939)
+|||||+|||++|||. |+++|.++|++++..|.++|+|||++|+.|||.++++...+..|.+.+++ |||++.
T Consensus 169 lRiLRAvRFaa~LgF~---Ie~~T~~~I~~~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~ 242 (410)
T TIGR01942 169 VRMLRALRFSVKLEFT---IDESTARPIRESAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVA 242 (410)
T ss_pred HHHHHHHHHHHHhCCC---cCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHH
Confidence 9999999999999997 99999999999999999999999999999999999988877777776665 799876
No 12
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-35 Score=340.56 Aligned_cols=193 Identities=29% Similarity=0.353 Sum_probs=167.6
Q ss_pred ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeE--EeecccCeEEEEEEeeccC
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQ--LRIAGEGTVTAKVLSYRNR 619 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~--~~~~~~g~~~~~v~tfr~~ 619 (939)
-++++.||+. ||.|+.|+|++|++.|+ +++++++.+...|.+ ++...++-..++++|||.+
T Consensus 26 ylVGGaVRD~LLG~~~~D~Diat~~~p~----------------~~~~~~~~~~~~G~~f~t~~v~~~~~~~ev~T~R~~ 89 (412)
T COG0617 26 YLVGGAVRDLLLGRPPKDVDIATNATPE----------------EVKKLFRNTRPVGRKFGTVTVPFNGEIIEVTTFRKE 89 (412)
T ss_pred EEeCcHHHHHHcCCCCcceeeeCCCCCH----------------HHHHHHhhhhhhhhhcCeEEeccCCEEEEEEEeecC
Confidence 3678899997 79999999999999999 888888866666544 2222221156789999987
Q ss_pred CC-C---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHHHHHH
Q psy11686 620 RE-K---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFR 689 (939)
Q Consensus 620 ~~-~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilRa~R 689 (939)
.. + ..++++||.||||||||||++. .+|+|+|||||+.||++|+||+||+|.+||.|||||||||+|
T Consensus 90 ~~~~~~~~~~~~~~~tleeDl~RRDFTINAla~~~---~~~~iiD~~gG~~DL~~~~lR~i~~~~~rf~EDplRiLRa~R 166 (412)
T COG0617 90 GYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDP---EDGEIIDPFGGLKDLENRVLRHIGDASERFREDPLRILRAAR 166 (412)
T ss_pred CCCcCCCcCCcCCCCCHHHHHHHhcccHHhhccCC---CCCeEEeCCCCHHHHhcCceeccCCHHHhcccchHHHHHHHH
Confidence 53 2 2499999999999999999886 799999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccc
Q psy11686 690 FFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKA 757 (939)
Q Consensus 690 Faarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~ 757 (939)
|++||||. ++++|.++|+.+...+..+|.|||+.|+.|||.++++...+..|.+.+.+ |||++..
T Consensus 167 Faa~l~f~---i~~~t~~~i~~~~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~ 233 (412)
T COG0617 167 FAARLGFT---IEPETEEAIRLMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDK 233 (412)
T ss_pred HHHHcCCC---CChhHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHH
Confidence 99999997 99999999999999999999999999999999999988877777776666 7998864
No 13
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=6.9e-35 Score=322.77 Aligned_cols=226 Identities=17% Similarity=0.192 Sum_probs=166.0
Q ss_pred cccccccccee-ecCCCCCCcc-ccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeE-----EEEEE
Q psy11686 542 QPRATLQGARL-LTRPPNPHSV-RFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTV-----TAKVL 614 (939)
Q Consensus 542 ~~i~~m~V~Sl-I~~P~~D~dI-~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~-----~~~v~ 614 (939)
.-++++.||++ |++|+.|.|+ .++++++ ++.+ .+...+|..|+++ ..+++
T Consensus 14 ~YlVGGaVRD~LLg~~~~D~D~vv~ga~pe----------------~l~~-------~~~~~vG~~f~v~l~~~~~~e~a 70 (364)
T PRK13297 14 VYIVGGAVRDALLGLPAGDRDWVVVGATPE----------------DMAR-------RGFIPVGGDFPVFLHPRTKEEYA 70 (364)
T ss_pred EEEeCcHHHHHHcCCCCCCeeeeccCChHH----------------HHHh-------cCceeeCCEEEEEEeCCceEEEE
Confidence 35788899997 6999999997 4567777 3222 1333445555543 34566
Q ss_pred eeccCCC-------------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhch
Q psy11686 615 SYRNRRE-------------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDY 681 (939)
Q Consensus 615 tfr~~~~-------------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDP 681 (939)
++|++.. ...++++||.||||||||||++. +|+|||||||++||++|+||+|++ +|.|||
T Consensus 71 ~aRterk~g~g~~~f~~~~~~~~tLeeDL~RRDFTINAmA~~~----~g~liDpfgG~~DL~~riLR~v~~---~F~EDP 143 (364)
T PRK13297 71 LARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTP----QGELVDPLDGVADVRARVLRHVGE---AFAEDP 143 (364)
T ss_pred EEEEeeccCCCCceeEEeCCCCCCHHHHHHhccceeeeeEECC----CCCEEECCCCHHHHhCCCeeeCcc---ccccCH
Confidence 6654321 11389999999999999999984 689999999999999999999996 799999
Q ss_pred hhHHHHHHHHHHhC-CCCCCChHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686 682 LRILRYFRFFARIC-NNPNNHKEEVLSAIKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 682 lRilRa~RFaarlg-f~~~~i~~~t~~ai~~~~~--~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~ 756 (939)
||||||+|||+||| |+ |+++|.++|++++. .|..+|+|||++||.|+|.++++...+..|.+.+.+ +||+|.
T Consensus 144 LRILRa~RFaarlg~F~---i~~eT~~~~~~~~~~~~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~Pel~ 220 (364)
T PRK13297 144 VRILRLGRFAARFGDFS---IAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELH 220 (364)
T ss_pred HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcccc
Confidence 99999999999996 97 99999999999985 699999999999999999999876666655555555 799997
Q ss_pred chhhHHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCC
Q psy11686 757 ATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNP 806 (939)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~ 806 (939)
..... ...+.|........ ..+|.+-+. ++ ..+.++|+||.+|.
T Consensus 221 ~~~~~---~~~l~~a~~~~~~~-~~r~a~L~~-~~-~~~~~~~~rl~~p~ 264 (364)
T PRK13297 221 DDAAV---RAEIDRAAAAGLPL-AGRYALLCR-HT-PERDALGRRLRAPV 264 (364)
T ss_pred ccccc---cHHHHHHHhcCCCh-HHHHHHHHc-cC-chHHHHHHHHCCCH
Confidence 64422 22334433322110 111211111 22 23688999999998
No 14
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=100.00 E-value=3.7e-33 Score=326.01 Aligned_cols=195 Identities=20% Similarity=0.190 Sum_probs=162.9
Q ss_pred ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL 614 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~ 614 (939)
-+++..||++ +++++.|+||++++.++ ++.++++.+.. .....+..||+++ ++|+
T Consensus 31 y~VGG~VRD~llg~~~~D~Di~~~~~~~----------------~~~~~~~~~~~-~~~~~g~~~g~~~v~~~~~~~ei~ 93 (466)
T TIGR02692 31 YLVGGSVRDALLGRLGHDLDFTTDARPE----------------ETLAILRPWAD-AVWDTGIAFGTVGAEKDGQQIEIT 93 (466)
T ss_pred EEeCcHHHHHHcCCCCCCEEEEeCCCHH----------------HHHHHHHHhhh-hccccCcccceEEEEECCcEEEEE
Confidence 4678889997 69999999999998888 55555543210 0123466677765 4689
Q ss_pred eeccCCCC----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhH
Q psy11686 615 SYRNRREK----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRI 684 (939)
Q Consensus 615 tfr~~~~~----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRi 684 (939)
+||.+..+ .+++++||.||||||||||++++....|.|+|||||++||++|+||+|++|.++|.|||+||
T Consensus 94 ~~r~e~~~~~~~~~~v~~~~~i~~Dl~rRDFTiNA~a~~~~~~~~g~l~D~~~G~~Dl~~~~ir~v~~~~~~f~eDPlRi 173 (466)
T TIGR02692 94 TFRSDSYDGTSRKPEVTFGDTLEGDLIRRDFTVNAMAVRIPADGSLEFHDPVGGLDDLLAKVLDTPATPEQSFGDDPLRM 173 (466)
T ss_pred ecccccCcCCCCCCcccCCCCHHHHHHhccccHHHhhccccCCCCceeecCCCcHHHHhCCceEecCChHHhhhhChHHH
Confidence 99976421 24899999999999999999985444479999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccc
Q psy11686 685 LRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKA 757 (939)
Q Consensus 685 lRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~ 757 (939)
|||+|||+||||. |+++|+++|++++..+..+|.|||+.||.|||.++++...+..|.+.+.+ +||++..
T Consensus 174 LRa~Rfaa~lgf~---i~~~T~~~i~~~~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~~ 245 (466)
T TIGR02692 174 LRAARFVSQLGFE---VAPRVRAAMTEMADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIPA 245 (466)
T ss_pred HHHHHHHHHhCCC---cCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHHH
Confidence 9999999999997 99999999999999999999999999999999999887777777776665 6898753
No 15
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.98 E-value=7.3e-33 Score=313.03 Aligned_cols=181 Identities=22% Similarity=0.235 Sum_probs=144.3
Q ss_pred cccccccee-ecCCCCCCcccc-CCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-----EEEEee
Q psy11686 544 RATLQGARL-LTRPPNPHSVRF-KSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-----AKVLSY 616 (939)
Q Consensus 544 i~~m~V~Sl-I~~P~~D~dI~t-~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-----~~v~tf 616 (939)
++++.||+. |++|+.|.|+.+ +++++ ++.+ ..+... |+.|+++. .+++++
T Consensus 5 lVGGaVRD~LLg~~~~D~D~vv~g~~~~----------------~~~~--~~~~~v-----G~~f~v~l~~~~~~e~a~a 61 (417)
T PRK13298 5 LVGGAVRDSLLNLPVKDKDWVVVGGTPK----------------ILLS--INFQQV-----GKDFPVFLHPETHEEYALA 61 (417)
T ss_pred EEccHHHHHHcCCCCCCeeEEecCCCHH----------------HHHH--HHHHHh-----CCeeEEEEeCceeEEEEee
Confidence 567889997 699999999765 44565 2211 113333 44455543 467777
Q ss_pred ccCCC-------------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686 617 RNRRE-------------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR 683 (939)
Q Consensus 617 r~~~~-------------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR 683 (939)
|.+.. ...++++||.||||||||||++. +|.|||||||++||++|+||+|++ +|.|||||
T Consensus 62 Rter~~g~g~~g~~~~~~~~~tleeDL~RRDFTINAmA~~~----~g~liDp~~G~~DL~~r~lR~v~~---~F~EDPLR 134 (417)
T PRK13298 62 RTERKSGVGYTGFITDTSSDVTLEEDLIRRDLTINAIAQDE----NGNYIDPFQGKKDIQLRLLRHVSE---SFIEDPLR 134 (417)
T ss_pred cccccccCCCCCcccccCCCCCHHHHHHhcccceeeeEECC----CCCEEeCCCcHHHHHCCcEecCCc---ccccCHHH
Confidence 76422 12389999999999999999985 799999999999999999999986 79999999
Q ss_pred HHHHHHHHHHh---CCCCCCChHHHHHHHHHhh--hhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686 684 ILRYFRFFARI---CNNPNNHKEEVLSAIKNNL--DGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 684 ilRa~RFaarl---gf~~~~i~~~t~~ai~~~~--~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~ 756 (939)
||||+|||+|| ||+ |+++|.++|++++ ..|..+|+|||+.||.|+|.++++...+..|.+.+.+ +||+|.
T Consensus 135 iLRa~RFaar~~~lgF~---i~~~T~~~i~~~~~~~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~ 211 (417)
T PRK13298 135 VLRVARFAALLVHLGFK---IAKETMILMCIMVKKHELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEID 211 (417)
T ss_pred HHHHHHHHHHhccCCCc---cCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchH
Confidence 99999999995 997 9999999999998 7899999999999999999999876655555544444 699876
Q ss_pred c
Q psy11686 757 A 757 (939)
Q Consensus 757 ~ 757 (939)
.
T Consensus 212 ~ 212 (417)
T PRK13298 212 F 212 (417)
T ss_pred H
Confidence 4
No 16
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.98 E-value=1.8e-32 Score=300.61 Aligned_cols=256 Identities=19% Similarity=0.235 Sum_probs=175.9
Q ss_pred cccccccee-ecCCCCCCcccc-CCCCCcccccCCCcccccchhHHHHHHHHHHhhC--eEEeecccCeEEEEEEeeccC
Q psy11686 544 RATLQGARL-LTRPPNPHSVRF-KSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHG--YQLRIAGEGTVTAKVLSYRNR 619 (939)
Q Consensus 544 i~~m~V~Sl-I~~P~~D~dI~t-~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g--~~~~~~~~g~~~~~v~tfr~~ 619 (939)
++++.||++ +++++.|+|+.+ ++.++ ++.. ..+...| +.++ -++...++++++|.+
T Consensus 5 LVGGaVRD~LLgr~p~DiDivV~g~~~~----------------~~l~--~~~~~vg~~f~V~--~~~~~~~Eiat~R~E 64 (360)
T PRK13296 5 LVGGAVRDMLLGITPKDKDWVVVGATED----------------EMLA--NGFIKIAANFPVF--IHPQTKQEYALARSE 64 (360)
T ss_pred EeccHHHHHHcCCCCCCeeEEecCCcHH----------------HHHH--hhhhhcCCceEEE--EECCeeEEEeecccc
Confidence 577889997 799999999965 43333 1110 1122222 1111 123346789999975
Q ss_pred CCCC-------------CCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHHH
Q psy11686 620 REKE-------------DRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILR 686 (939)
Q Consensus 620 ~~~~-------------~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilR 686 (939)
..+. .++++||.||||||||||++. +|.|||||||++||++|+||++++ ||.|||+||||
T Consensus 65 ~~~~~g~~~~~v~~~~~~tieeDL~RRDFTINAmA~d~----~g~liDpfgG~~DL~~kiLR~v~~---sF~EDPLRILR 137 (360)
T PRK13296 65 KKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQ----NNKVIDPFNGQADLQNRILRHTSI---AFIEDPLRVVR 137 (360)
T ss_pred ccccCCCCCCeEeeCCCCCHHHHHHhcCcceeeeEECC----CCCEecCCCCHHHHHCCceecCcc---ccccCHHHHHH
Confidence 4211 169999999999999999985 699999999999999999999964 89999999999
Q ss_pred HHHHHHHh---CCCCCCChHHHHHHHHHhh--hhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccchh
Q psy11686 687 YFRFFARI---CNNPNNHKEEVLSAIKNNL--DGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKATT 759 (939)
Q Consensus 687 a~RFaarl---gf~~~~i~~~t~~ai~~~~--~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~~~ 759 (939)
|+|||+|| ||+ ++++|.++|++++ ..|..+|+|||+.||.|+|.++ ...+..|.+.+.+ +||++....
T Consensus 138 a~RFaarL~~~gF~---ie~eT~~~i~~~~~~~~L~~vs~ERI~~El~kiL~~p--~~~l~~L~~~glL~~lfPel~~~~ 212 (360)
T PRK13296 138 LARFKAQLSNFNFS---IAQEMLALIKELVKTGELNHLTRERLHIEFVKALNNP--KIFFTTLKELEALKIIFPNISCIL 212 (360)
T ss_pred HHHHHHHhccCCCC---cCHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHhCh--HHHHHHHHHcCCHHHhCcchHHHh
Confidence 99999986 997 9999999999986 4899999999999999999853 3444444444444 699987522
Q ss_pred --h--HHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHHHhh-hhccccccccchhhHH
Q psy11686 760 --M--REYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIK-KNLDGLHNISGERIWT 834 (939)
Q Consensus 760 --~--~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai~-~i~~~L~~l~~eri~~ 834 (939)
. ....+.. +.++. +.-.+|.+.+..++...+.+++..+..+. +..+-.+.... .-+....+..++.++.
T Consensus 213 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 286 (360)
T PRK13296 213 PLIPNKSFFENP-IYKGS----NINEKITLCLLKIPQQQLDDIRKELLLTN-KHYKLLKASIAISKILEDRSITAEEIFQ 286 (360)
T ss_pred cCCCCcHHHHHH-HhhCC----CcchhhhhhhccCCHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhhcccccCCHHHHHH
Confidence 1 1222222 22221 11133455566667788899999988887 44433332222 1123455666666666
Q ss_pred HHh
Q psy11686 835 ELN 837 (939)
Q Consensus 835 ~L~ 837 (939)
.++
T Consensus 287 ~~~ 289 (360)
T PRK13296 287 LIK 289 (360)
T ss_pred HHH
Confidence 665
No 17
>KOG0535|consensus
Probab=99.98 E-value=3.7e-33 Score=291.07 Aligned_cols=161 Identities=26% Similarity=0.403 Sum_probs=131.9
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc------CCCCC
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL------DSADV 476 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~------~g~d~ 476 (939)
|+.++|+++|..+++++||||||||++|.++++++|+.|+.||||||+|+|+||+|||+.|||...... +|+|.
T Consensus 77 lt~d~l~s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~~~~a~hV~Fegad~ 156 (381)
T KOG0535|consen 77 LTLDDLKSLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSRETKALHVCFEGADD 156 (381)
T ss_pred eeHHHhhhhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcccCcceEEEEecccc
Confidence 334444455667899999999999999999999999999999999999999999999999999753322 66664
Q ss_pred ce------eeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec-----
Q psy11686 477 QH------VHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT----- 531 (939)
Q Consensus 477 ~~------~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~----- 531 (939)
.. -|+++ ++|||+ +||||||+++||||||.||||..|.+ +|.|+++||+++|+.
T Consensus 157 d~tg~pYgaSI~l-~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDyk~ 235 (381)
T KOG0535|consen 157 DPTGTPYGASIPL-EKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDYKG 235 (381)
T ss_pred CCCCCcccccccH-hhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhccccc
Confidence 32 47776 999998 89999999999999999999999765 888999999888876
Q ss_pred -CC----CCCCCCCCccccccccceeecCCCCCCcccc
Q psy11686 532 -QP----ENGHPSGYQPRATLQGARLLTRPPNPHSVRF 564 (939)
Q Consensus 532 -~~----~~~~~~~~~~i~~m~V~SlI~~P~~D~dI~t 564 (939)
+| ++..+....+|++|+|+|.|+.|.....+..
T Consensus 236 f~psvd~d~~~w~~~p~iqe~pVqsaIctp~~~~~V~~ 273 (381)
T KOG0535|consen 236 FSPSVDWDEVDWSSKPSIQELPVQSAICTPEDGLPVKA 273 (381)
T ss_pred CCCccCccccccccCchhhhcCcceeecccCCCceecc
Confidence 22 2223344468999999999999966655543
No 18
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=99.97 E-value=1.7e-32 Score=313.77 Aligned_cols=181 Identities=23% Similarity=0.297 Sum_probs=147.1
Q ss_pred cccccccee-ecCCCCCCccc-cCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-----EEEEee
Q psy11686 544 RATLQGARL-LTRPPNPHSVR-FKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-----AKVLSY 616 (939)
Q Consensus 544 i~~m~V~Sl-I~~P~~D~dI~-t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-----~~v~tf 616 (939)
++++.||++ |++|+.|+|+. +++.++ ++.+ .|++.+|+.|+++. .+++++
T Consensus 5 lVGG~VRD~Llg~~~~D~D~vv~~~~~~----------------~~~~-------~~~~~~g~~f~v~~~~~~~~e~~~~ 61 (409)
T PRK10885 5 LVGGAVRDALLGLPVKDRDWVVVGATPE----------------EMLA-------QGYQQVGKDFPVFLHPKTHEEYALA 61 (409)
T ss_pred EeccHHHHHHcCCCCCCeeEEeeCChHH----------------HHHh-------CCCeecCceeEEEEeCCceEEEEee
Confidence 567889997 69999999974 567777 2111 13344566666543 457777
Q ss_pred ccCCC-------------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686 617 RNRRE-------------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR 683 (939)
Q Consensus 617 r~~~~-------------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR 683 (939)
|++.. +..++++||.||||||||||++. +|.|||||||++||++|+||+|++ +|.|||+|
T Consensus 62 r~er~~~~g~~~~~~~~~~~~~l~eDl~RRDfTiNA~a~~~----~~~liDp~~G~~Dl~~~~lr~v~~---~f~eDPlR 134 (409)
T PRK10885 62 RTERKSGRGYTGFTCYAAPDVTLEEDLIRRDLTINAMAQDD----DGELIDPYGGQRDLEARLLRHVSP---AFAEDPLR 134 (409)
T ss_pred eeccccCCCCCCceeccCCCCCHHHHHHhccchhhhheeCC----CCCEecCCCCHHHHhCCceEeCCc---hhhhCHHH
Confidence 75431 12389999999999999999994 799999999999999999999997 59999999
Q ss_pred HHHHHHHHHHh---CCCCCCChHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686 684 ILRYFRFFARI---CNNPNNHKEEVLSAIKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 684 ilRa~RFaarl---gf~~~~i~~~t~~ai~~~~~--~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~ 756 (939)
||||+|||+|| ||. |+++|+++|++++. .|..+++|||+.||.|+|.++++...+..|.+.+.+ +||++.
T Consensus 135 iLRa~RFaarl~~lgf~---i~~~T~~~i~~~~~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~ 211 (409)
T PRK10885 135 VLRVARFAARFAHLGFR---IAPETLALMREMVASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEID 211 (409)
T ss_pred HHHHHHHHHHhccCCCC---cCHHHHHHHHHhhhhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHH
Confidence 99999999999 997 99999999999987 899999999999999999999877666655555554 799875
Q ss_pred c
Q psy11686 757 A 757 (939)
Q Consensus 757 ~ 757 (939)
.
T Consensus 212 ~ 212 (409)
T PRK10885 212 A 212 (409)
T ss_pred H
Confidence 4
No 19
>KOG2159|consensus
Probab=99.97 E-value=2.8e-31 Score=293.27 Aligned_cols=123 Identities=36% Similarity=0.366 Sum_probs=113.5
Q ss_pred CccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHH
Q psy11686 625 RIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEE 704 (939)
Q Consensus 625 ~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~ 704 (939)
+..+|+.|||||||++.+++ .+|+|+||+||++||++++||++++|.+||.|||+||||++|||+||||+++..+.+
T Consensus 125 t~~~nalRRD~TIN~Lffn~---~~~~VeDytgG~eDL~~~kvrt~~~A~~tf~eDpLRILR~iRFaaRlgftid~~~~e 201 (416)
T KOG2159|consen 125 TRDENALRRDFTINSLFFNP---FDGTVEDYTGGLEDLKNKKVRTVLHAKQTFLEDPLRILRGIRFAARLGFTIDEESKE 201 (416)
T ss_pred cchhhhhhhccchhhhhccC---CCCceeeccccHhHHhcCeEEeeccccceeccchHHHHHHHHHHHhhcCccCcccHH
Confidence 67789999999999999998 899999999999999999999999999999999999999999999999986666899
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc
Q psy11686 705 VLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL 750 (939)
Q Consensus 705 t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l 750 (939)
|+++++.++.+++++|+|||+.|+.|||.++.+..++..|.+..+.
T Consensus 202 ~~~~~k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~ 247 (416)
T KOG2159|consen 202 TLEAIKENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGF 247 (416)
T ss_pred HHhhHHHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999887777766663443
No 20
>PLN00177 sulfite oxidase; Provisional
Probab=99.96 E-value=2.5e-29 Score=284.35 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=129.5
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCC-------CCCCc---C
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGIS-------PDQSL---D 472 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~-------~~~~~---~ 472 (939)
|+++||++||++++++++||+||+|++|...++++|.+|++||||||+|+||+|+|||++||++ +++.+ +
T Consensus 79 ltl~dL~~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~ 158 (393)
T PLN00177 79 LSMKDIRKLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFV 158 (393)
T ss_pred eeHHHHhcCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEE
Confidence 4555666779999999999999999999888999999999999999999999999999999996 44544 5
Q ss_pred CCCC--------ceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCce--
Q psy11686 473 SADV--------QHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSS-- 528 (939)
Q Consensus 473 g~d~--------~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~-- 528 (939)
|.|. ..+++++ ++|||+ +||||||+++||||||+|||||++.. +|+|.++++...
T Consensus 159 g~d~~~~~~~~~y~~sipl-~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~ 237 (393)
T PLN00177 159 SVDKCKEENGGPYKASIPL-SQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFM 237 (393)
T ss_pred EeccccccCCCCcEEeEEH-HHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcce
Confidence 5542 3588998 999973 89999999999999999999999754 788888887554
Q ss_pred ---eecCCCCC-----CCCCCccccccccceeecCCCCCCccc
Q psy11686 529 ---YNTQPENG-----HPSGYQPRATLQGARLLTRPPNPHSVR 563 (939)
Q Consensus 529 ---y~~~~~~~-----~~~~~~~i~~m~V~SlI~~P~~D~dI~ 563 (939)
|+..+... .+....|+.+|+|+|+|+.|..+..+.
T Consensus 238 ~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~ 280 (393)
T PLN00177 238 QKDYKMFPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIK 280 (393)
T ss_pred ecccccCCCCCCccccCccccCcceeecCCeEEecCCCCCccc
Confidence 44322111 122236899999999999997666653
No 21
>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.95 E-value=4.3e-28 Score=251.47 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=114.6
Q ss_pred EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccC--ccCccccHHHHHhCCCCC-----------C------
Q psy11686 157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNIS--QEDSKLAAKDIASDPYVM-----------E------ 210 (939)
Q Consensus 157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~--~~~~~~~~~~vL~~~g~~-----------d------ 210 (939)
|+|+|+ |+|++ |++||++||++.||+ +|+++|+ +.|+|+++++||+.||++ |
T Consensus 28 w~L~V~-GlV~~-p~~ltl~eL~~~lP~~~~~~~l~Cv~gWs~~a~W~GV~L~dlLe~ag~~~~A~~V~f~~~d~~~~~~ 105 (218)
T cd02107 28 WTVSVS-GLVKK-PKTLDIDDLMKTFPLEERIYRFRCVEGWSMVVPWVGFPLAALLARAEPTSEAKYVRFTTLLDKEQMP 105 (218)
T ss_pred eEEEEE-eEcCC-CeEEEHHHHHhcCCCeEEEEEEEEeCCCcceeEEEeeEHHHHHHHcCCCCCCCEEEEEecCcccccc
Confidence 999999 99998 999999999933999 9999988 789999999999999974 1
Q ss_pred -----------C--CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccC
Q psy11686 211 -----------P--VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQND 265 (939)
Q Consensus 211 -----------~--~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~ 265 (939)
+ .||||++||++ |+|||||||++ |||||||||| ||||++|+|++++++||||++|
T Consensus 106 g~~g~~~~~~~~Y~~slpl~~Al~~~~LLAy~mNGepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~ 185 (218)
T cd02107 106 GQSGLFGVLPWPYVEGLRLDEAMHPLTLLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAA 185 (218)
T ss_pred CCccccccccCCcccceeHHHhhCcccEEEeeeCCcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccC
Confidence 1 25999999998 99999999999 9999999999 9999999999999999999995
Q ss_pred ------CCccCCCCCCCCccCCCCCCcccccceEEEEe
Q psy11686 266 ------YKGFSPSTDWDTVDFAKSPAIQELPVISAICL 297 (939)
Q Consensus 266 ------Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~ 297 (939)
|+..++.++ .|+++|.|+|.|..
T Consensus 186 ~~~~~~y~~~~~~~~---------~~~~~~~~~~~i~~ 214 (218)
T cd02107 186 PDEYGFYANVNPSVD---------HPRWSQATERRIGE 214 (218)
T ss_pred cccccccccCCCCCC---------CCccccceeeeecc
Confidence 444443321 57999999999853
No 22
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.95 E-value=7.2e-28 Score=272.26 Aligned_cols=159 Identities=19% Similarity=0.270 Sum_probs=129.8
Q ss_pred ccHHHHhhc-cccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCC---CCCc---CCCC
Q psy11686 403 FAEEKVRTF-NEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISP---DQSL---DSAD 475 (939)
Q Consensus 403 f~~~~l~~~-p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~---~~~~---~g~d 475 (939)
|+++||+++ |++++++++||+||+|++|...+++.|.+|+.|+||||+|+||+|+|||++||+++ ++++ +|+|
T Consensus 75 ltl~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~~~a~~V~~~g~D 154 (386)
T cd02112 75 LTMDELVAMFPSVTFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPKGGARHVCFEGAD 154 (386)
T ss_pred EeHHHHHhcCCceEEEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCccCCceEEEEEccC
Confidence 344444443 78899999999999999998889999999999999999999999999999999999 6766 6766
Q ss_pred C--------ceeeEEeeeeecc---c-----CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeecCC
Q psy11686 476 V--------QHVHVEIWSKAVD---S-----SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNTQP 533 (939)
Q Consensus 476 ~--------~~~~~~~~~~a~d---~-----~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~~~ 533 (939)
. ..+++++ ++||+ + +||||||+++||||||+||||++|.. +|++.++++.+.|++..
T Consensus 155 ~~~~~~~~~y~~slpl-~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~ 233 (386)
T cd02112 155 DLLPGPNGKYGTSITL-SWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHD 233 (386)
T ss_pred cccccCCCCcEeeeEH-HHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecc
Confidence 4 3478998 89997 3 99999999999999999999999654 88888888877776522
Q ss_pred CC----------CCC-----CCCccccccccceeecCCCCCCcc
Q psy11686 534 EN----------GHP-----SGYQPRATLQGARLLTRPPNPHSV 562 (939)
Q Consensus 534 ~~----------~~~-----~~~~~i~~m~V~SlI~~P~~D~dI 562 (939)
+. ... +...+++.|+|+|+|+.|..+..+
T Consensus 234 y~~~~~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v 277 (386)
T cd02112 234 NRVLPSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVL 277 (386)
T ss_pred cccCCcccCccccccccccccCCceeeeeccCeEEeccCCCCEe
Confidence 11 111 112478999999999999877766
No 23
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.94 E-value=1.1e-27 Score=269.42 Aligned_cols=158 Identities=28% Similarity=0.377 Sum_probs=128.4
Q ss_pred ccHHHHhhc-cccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCC----CCc---CCC
Q psy11686 403 FAEEKVRTF-NEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD----QSL---DSA 474 (939)
Q Consensus 403 f~~~~l~~~-p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~----~~~---~g~ 474 (939)
|+++||+++ |++++++++||+||+|+++...+++.|.+|+.|+|||++|+||+|+|||++||+++. +.+ +|.
T Consensus 60 ltl~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~~~~a~~V~~~~~ 139 (365)
T cd02111 60 LSLEDLKSLFPKHEVTATLQCAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDDSQGGLHVHFEGL 139 (365)
T ss_pred EeHHHHHhhCCcEEEEEEEEecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCccCCCceEEEEEec
Confidence 444444554 788999999999999999988899999999999999999999999999999999986 444 777
Q ss_pred C------CceeeEEeeeeecc--c------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCc-----ee
Q psy11686 475 D------VQHVHVEIWSKAVD--S------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDS-----SY 529 (939)
Q Consensus 475 d------~~~~~~~~~~~a~d--~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~-----~y 529 (939)
| ...+++|+ ++||+ . +||||||+++||||||+||||+++.. +|+|.++++.. .|
T Consensus 140 d~~~~~~~y~~sipl-~~a~~p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y 218 (365)
T cd02111 140 DVDPTGTPYGASIPL-SKALDPEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDY 218 (365)
T ss_pred CCCCCCCCeeeeeEH-HHhhCcCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecce
Confidence 7 45689998 99998 3 99999999999999999999999754 77888887744 44
Q ss_pred ec-CCCC----CCCCCCccccccccceeecCCCCCCc
Q psy11686 530 NT-QPEN----GHPSGYQPRATLQGARLLTRPPNPHS 561 (939)
Q Consensus 530 ~~-~~~~----~~~~~~~~i~~m~V~SlI~~P~~D~d 561 (939)
++ .+.. ..+....+++.|+|+|+|..|..+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~ 255 (365)
T cd02111 219 KGFSPSVDWDNVDFSKAPAIQEMPVQSAICSPSVGAP 255 (365)
T ss_pred eecCCCCCccccCccccCceeeeccCEEEecCCCCCe
Confidence 43 1111 11223468999999999999987664
No 24
>PLN02252 nitrate reductase [NADPH]
Probab=99.94 E-value=1.8e-27 Score=293.66 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=134.7
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCC---CCCCc---CCCC-
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGIS---PDQSL---DSAD- 475 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~---~~~~~---~g~d- 475 (939)
|+++||++||+++++++|+|+||+|+++..++++.|.+|+.|||||++||||+|+|||++||+. +++++ +|+|
T Consensus 148 ltl~dL~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~~~~a~~V~f~g~d~ 227 (888)
T PLN02252 148 LTMDELVRFPARELPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSRKGGALNVCFEGAED 227 (888)
T ss_pred eeHHHHhhCCCeeEEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCCCCCceEEEEEcccc
Confidence 4555556678999999999999999999999999999999999999999999999999999998 56666 6765
Q ss_pred -------CceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceeeE------EEEEEecCCcCceeecC--
Q psy11686 476 -------VQHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYHR------VRVEIWSKAVDSSYNTQ-- 532 (939)
Q Consensus 476 -------~~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~~------~~i~~~~~~~~~~y~~~-- 532 (939)
...+++++ ++|||+ +||||||+++||||||+|||||+|. .+|+|.++++++.|++.
T Consensus 228 ~~~~~~~~y~~sipl-~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~d~ 306 (888)
T PLN02252 228 LPGGGGSKYGTSITL-ERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDN 306 (888)
T ss_pred cccCCCCCceeeeeH-HHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeeccc
Confidence 23478998 899984 8999999999999999999999974 38889999998888762
Q ss_pred ---CCCC-----CC-C----CCccccccccceeecCCCCCCccccC
Q psy11686 533 ---PENG-----HP-S----GYQPRATLQGARLLTRPPNPHSVRFK 565 (939)
Q Consensus 533 ---~~~~-----~~-~----~~~~i~~m~V~SlI~~P~~D~dI~t~ 565 (939)
|... .. . ...++++|+|+|+|+.|..+..+..+
T Consensus 307 r~~p~~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~ 352 (888)
T PLN02252 307 RVLPSHVDAELANAEGWWYKPEYIINELNINSVITTPAHDEILPIN 352 (888)
T ss_pred ccCCCcccccccccccccccCCccceeeccceEEecCCCCCEeccc
Confidence 2110 00 1 12368999999999999988887654
No 25
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.94 E-value=4.4e-27 Score=260.13 Aligned_cols=157 Identities=20% Similarity=0.311 Sum_probs=129.2
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--c
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--Q 477 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--~ 477 (939)
|+++||++||+++++++|+|+||+|+++.. +++.|.||+.|+|||++|+||+|+|||++||+++++.+ +|.|. .
T Consensus 45 ltl~dL~~~p~~~~~~~l~C~gn~r~~~~~-~~~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~~a~~V~~~g~D~~~y 123 (326)
T cd02113 45 FTMDDLKRFPSVSRIYFLECSGNGGTGWRG-APLPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKPGAKWLLAEGADAAAM 123 (326)
T ss_pred eeHHHHhcCCCEEEEEEEEecCCCcccccc-cccccccccccceeEEEEEeeEHHHHHHhcCCCCCceEEEEEecCCCce
Confidence 556666678999999999999999999864 45889999999999999999999999999999998877 78774 4
Q ss_pred eeeEEeeeeeccc-----CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcC-----ceeecCCCCCCCCCC
Q psy11686 478 HVHVEIWSKAVDS-----SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVD-----SSYNTQPENGHPSGY 541 (939)
Q Consensus 478 ~~~~~~~~~a~d~-----~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~-----~~y~~~~~~~~~~~~ 541 (939)
.+++|+ ++||++ +||||||+++||||||+||||+++.. +|++.+.++. ..|+..+... ...
T Consensus 124 ~~sipl-~~a~~~~lLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~~--~~~ 200 (326)
T cd02113 124 TRSIPL-EKALDDALVAYAQNGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPDG--RAR 200 (326)
T ss_pred eEEeeH-HHhCcCcEEEEeeCCeECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhccccccCCCC--ccc
Confidence 588997 889965 99999999999999999999999764 7788887763 3355421111 123
Q ss_pred ccccccccceeecCCCCCCccc
Q psy11686 542 QPRATLQGARLLTRPPNPHSVR 563 (939)
Q Consensus 542 ~~i~~m~V~SlI~~P~~D~dI~ 563 (939)
.|.+.|+|+|+|..|..+..+.
T Consensus 201 ~~~~~~~v~S~I~~P~~~~~~~ 222 (326)
T cd02113 201 QFSFVMEAKSVITSPSGGQRLR 222 (326)
T ss_pred ccceEecccEEEecCCCCCEec
Confidence 4778999999999998777774
No 26
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.93 E-value=1.1e-26 Score=261.49 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=127.5
Q ss_pred ccHHHHhhc-cccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--
Q psy11686 403 FAEEKVRTF-NEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV-- 476 (939)
Q Consensus 403 f~~~~l~~~-p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~-- 476 (939)
|+++||+++ |+++++++++|+||+|+.+ .+++.|.||++|+|||++|+||+|+|||++||+++++++ +|.|.
T Consensus 79 ~tl~dL~~~~p~~~~~~~l~C~gN~r~~~--~~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~~a~~V~f~g~D~~~ 156 (367)
T cd02114 79 LSLAELKRIEPRFEVVAVNQCSGNSRGFF--QPRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQDGARQVAFRGLDQPV 156 (367)
T ss_pred EEHHHHhhcCCceEEEEEEEECCCCcccc--cccccCCCcccceEEeeEEEeeEHHHHHHHcCCCCCCcEEEEEecCCcc
Confidence 444555553 7889999999999999764 578899999999999999999999999999999998877 67663
Q ss_pred ------ceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec-----CC
Q psy11686 477 ------QHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT-----QP 533 (939)
Q Consensus 477 ------~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~-----~~ 533 (939)
..+++|+ ++||++ +||||||+++||||||+||||+++.. +|+|.++++...|+. .+
T Consensus 157 ~~~~~~y~~sipl-~~a~~~~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~ 235 (367)
T cd02114 157 LDVTPDFVKSLDI-DHALDGEVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRIPD 235 (367)
T ss_pred ccCCCCeEEeeeH-HHhcCCCeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeecccccCC
Confidence 3578998 899986 99999999999999999999999764 788888877554443 21
Q ss_pred CC---CC----CCCCccccccccceeecCCCCCCccc
Q psy11686 534 EN---GH----PSGYQPRATLQGARLLTRPPNPHSVR 563 (939)
Q Consensus 534 ~~---~~----~~~~~~i~~m~V~SlI~~P~~D~dI~ 563 (939)
.. .. +....+++.|+|+|+|..|..+..+.
T Consensus 236 ~~~~~~~~g~~~~~~~~i~~~~v~S~I~~P~~~~~~~ 272 (367)
T cd02114 236 NADAGVEPGTAPDRTAPINRFKVRSFITSLENGAIVA 272 (367)
T ss_pred CcccccCCcccccccceeeeeecceEEecCCCCCEec
Confidence 11 00 11236899999999999998776664
No 27
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=99.92 E-value=2.6e-25 Score=246.98 Aligned_cols=157 Identities=25% Similarity=0.399 Sum_probs=128.0
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC----
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD---- 475 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d---- 475 (939)
|+++||++||+++++++++|+||+|++|.. ...|+||++|+|||++|+||+|+|||++||+++++.+ +|.|
T Consensus 32 ~tl~dL~~lp~~~~~~~l~C~gn~r~~~~~--~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~ 109 (317)
T cd02110 32 LTLDDLKRLPSVEVVATLECSGNGRGGFIP--VRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKPGAKHVLFEGADVPPG 109 (317)
T ss_pred EeHHHHhhCCCeeEEEEEEcCCCCcccccc--cccCCccccCceeecEEECcCHHHHHHHhCCCCCCcEEEEEccCcccc
Confidence 666677778999999999999999998854 3459999999999999999999999999999987776 7776
Q ss_pred ----CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec-----CCC
Q psy11686 476 ----VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT-----QPE 534 (939)
Q Consensus 476 ----~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~-----~~~ 534 (939)
.-.+++++ ++|+++ +||||||+++||||+|+||||+++.. +|+|.+.++...|+. .+.
T Consensus 110 ~~~~~Y~~sipl-~~~~~~~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~ 188 (317)
T cd02110 110 EKAADYTRSVPL-SKALDDDALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDYTVPPP 188 (317)
T ss_pred cCCCCeEEEEEH-HHhcCCCcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCCCCceEccccccCCC
Confidence 34588998 899965 99999999999999999999999754 788888877555544 222
Q ss_pred CC---CCCCCccccccccceeecCCCCCCcc
Q psy11686 535 NG---HPSGYQPRATLQGARLLTRPPNPHSV 562 (939)
Q Consensus 535 ~~---~~~~~~~i~~m~V~SlI~~P~~D~dI 562 (939)
.. ......+++.|+|+|+|+.|..+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~s~I~~p~~~~~~ 219 (317)
T cd02110 189 DVDAVGGKARRPIGEMPVKSVITSPSPGAEL 219 (317)
T ss_pred cccccCCCccceeEEEccCEEEeccCCCCEe
Confidence 11 12234689999999999999766444
No 28
>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=99.92 E-value=2.2e-25 Score=228.48 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=110.8
Q ss_pred cccc-CCCCceEee-------EEEEEeecccCCcceeeeHHHHHHhccc-------eecccc--CccCccccHHHHHhCC
Q psy11686 144 NFLT-PSLLSQVGS-------STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNI--SQEDSKLAAKDIASDP 206 (939)
Q Consensus 144 ~~~T-P~~~~~v~~-------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~--~~~~~~~~~~~vL~~~ 206 (939)
+.|| |+.+||.++ |+|+|+ |+|++ |++||++||+ +||+ +|++++ ..+|+|+++++||+.|
T Consensus 8 ~~~~~p~~~~y~~~~~~~~~~w~l~V~-G~v~~-p~~ltl~dL~-~lp~~~~~~~~~Cv~gws~~~~w~Gv~L~dlL~~a 84 (185)
T cd02108 8 NGIRKPEALAYKALEANDFADYRLEVG-GLVEH-PLSLSLEELR-ALPQRTQITRHICVEGWSAIGKWGGVPLRTILELV 84 (185)
T ss_pred hhccCCCccceeccCCCCCCCEEEEEE-cccCC-CEEEEHHHHh-CCCCEEEEEEEEEcCCCceEEEEEEEEHHHHHHHh
Confidence 4466 888888776 999999 99998 9999999999 8999 999875 4689999999999999
Q ss_pred CCCC-----------------C--CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeec
Q psy11686 207 YVME-----------------P--VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDH 255 (939)
Q Consensus 207 g~~d-----------------~--~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~ 255 (939)
|+.. + .+|||++++++ |+||||||+++ |||||||||| ||||++|+|+++
T Consensus 85 g~~~~a~~V~~~a~d~~~~~~~Y~~sipl~~~~~~~~iLA~~~nGepL~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~ 164 (185)
T cd02108 85 GPLPEAKYVVFKCADDFAGGDRYYESIDMASALHPQTLLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVND 164 (185)
T ss_pred CCCCCCcEEEEEecCcCCCCCCeEEEEEHHHhcCCCcEEEEeeCCeECChhcCceEEEEcCCcccccCceEccEEEEEec
Confidence 9751 1 25999999987 99999999999 9999999999 999999999999
Q ss_pred CCC------CcccccCCCcc
Q psy11686 256 EST------SHWQQNDYKGF 269 (939)
Q Consensus 256 ~~~------g~w~~~~Y~~~ 269 (939)
+.+ ||||++||+.+
T Consensus 165 ~~~~~~~~~g~We~~gy~~~ 184 (185)
T cd02108 165 LPGIGGGKGGYWEDQGYNWF 184 (185)
T ss_pred cCccccCCCCccccCCcccc
Confidence 999 99999999864
No 29
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=99.91 E-value=3e-24 Score=208.38 Aligned_cols=86 Identities=37% Similarity=0.791 Sum_probs=66.0
Q ss_pred CCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCC-CceeEEEeE
Q psy11686 284 PAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLT-RHWGWTLWR 362 (939)
Q Consensus 284 ~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~-~~~~W~~W~ 362 (939)
.||++|+|||+|+.|.+++.++.++++++|+||||+|+|++|+|||||+|||+||++|+|..+..+..++ .+|+|++|+
T Consensus 2 ~~i~~~~v~S~I~~P~~~~~v~~~~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~ 81 (131)
T PF03404_consen 2 YPINEMPVNSVITSPSDGETVKAGDGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWE 81 (131)
T ss_dssp CB--B---EEEEEESBTTEEEESESEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEE
T ss_pred cchhhcCCCEEEEecCCCCEEccCCcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceee
Confidence 5899999999999999999998633699999999999888999999999999999999999987532111 279999999
Q ss_pred EEeecCC
Q psy11686 363 ATIPVDP 369 (939)
Q Consensus 363 ~~~~~~~ 369 (939)
++|++++
T Consensus 82 ~~~~~~~ 88 (131)
T PF03404_consen 82 YDWPPPS 88 (131)
T ss_dssp EEEEECS
T ss_pred eccCcCc
Confidence 9999987
No 30
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=99.90 E-value=3.9e-24 Score=231.78 Aligned_cols=146 Identities=12% Similarity=-0.007 Sum_probs=122.2
Q ss_pred cccCCCCceEee-----------------EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccC--ccCcccc
Q psy11686 145 FLTPSLLSQVGS-----------------STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNIS--QEDSKLA 198 (939)
Q Consensus 145 ~~TP~~~~~v~~-----------------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~--~~~~~~~ 198 (939)
.+|+...||.-. |+|+|+ |+|++ |.+||++||++.||+ +|+++|+ ..|+|++
T Consensus 73 ~~t~ynnFYef~t~k~dp~~~~~~~~~~~W~L~V~-G~V~k-P~~ltldDL~~~~P~~eri~~l~CVegWs~~~~W~Gvp 150 (319)
T PRK05363 73 DVTTYNNFYEFGTDKADPARNAGSLKTDPWTVKID-GEVEK-PGTLDIDDLLKLFPLEERIYRLRCVEAWSMVIPWIGFP 150 (319)
T ss_pred HcCCCCCeEEecCCcCChhHhcCcCCCCCeEEEEe-eecCC-CeEEEHHHHHhcCCCeEEEEEEEEcCCCceeeEEEeeE
Confidence 478888899764 999999 99998 999999999944898 9999987 6899999
Q ss_pred HHHHHhCCCCC------------C--------------CC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC-
Q psy11686 199 AKDIASDPYVM------------E--------------PV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF- 243 (939)
Q Consensus 199 ~~~vL~~~g~~------------d--------------~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg- 243 (939)
+++||+.+|+. | ++ ||||++||++ |+|||||||++ ||||||||||
T Consensus 151 L~dLLe~agp~~~AkyV~f~s~~d~~~~~g~~~~~~~~pY~~~LpL~eAm~p~tlLA~~mnGepLp~qhG~PlRLVVPg~ 230 (319)
T PRK05363 151 LAKLLKRVEPTSNAKYVAFETLYDPEQMPGQRSRFLDWPYVEGLRLDEAMHPLTLLAVGLYGKTLPNQNGAPIRLVVPWK 230 (319)
T ss_pred HHHHHHHcCCCCCCcEEEEEecCccccccCCcccccCCCeeccccHHHHhCccceehhhhCCcCCchhhCCceEEEeCCc
Confidence 99999999974 1 22 5999999998 99999999999 9999999999
Q ss_pred -----cceeeeEEEeecCCCCcccccCCCc--cCCCCCCCCccCCCCCCcccccceEEEEe
Q psy11686 244 -----CSHTGKVILSDHESTSHWQQNDYKG--FSPSTDWDTVDFAKSPAIQELPVISAICL 297 (939)
Q Consensus 244 -----vKWl~~I~~~~~~~~g~w~~~~Y~~--~~~~~~~~~~~~~~~~~i~~~~v~S~I~~ 297 (939)
||||.+|+|++++.+||||+++|.. +..++++. -.-|-|++...+.|..
T Consensus 231 YG~KsvKWI~~Ie~~~~~~~g~We~~~~~eygfyanvnp~-----v~hPrwsqa~er~ig~ 286 (319)
T PRK05363 231 YGFKSIKSIVRIRLTEEQPPTTWNLLAPNEYGFYANVNPN-----VDHPRWSQATERRIGE 286 (319)
T ss_pred eeeecceeeeEEEEEeCCCCCchhccCccccceeeecCCC-----CCCCccccchhceecc
Confidence 9999999999999999999998764 22333221 1135567777777753
No 31
>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=99.88 E-value=5.3e-23 Score=210.55 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=103.2
Q ss_pred eEEEEEeecccCCcceeeeHHHHHHhccc-------eecccc---CccCccccHHHHHhCCCCCC-----------C--C
Q psy11686 156 SSTITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNI---SQEDSKLAAKDIASDPYVME-----------P--V 212 (939)
Q Consensus 156 ~w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~---~~~~~~~~~~~vL~~~g~~d-----------~--~ 212 (939)
+|+|+|+ |+|++ |++||++||+ +||+ +|++++ ..+|+|+++++||+.+|+.+ . .
T Consensus 26 ~~~L~V~-G~v~~-p~~ltl~dL~-~lp~~~~~~~~~C~~~w~~~~~~w~Gv~L~dlL~~ag~~~~a~~V~~~a~DgY~~ 102 (180)
T cd02109 26 KWRLRVT-GLVEN-PLSLTYEDLL-ALPQTEYTADFHCVTGWSKLDVVWEGVSLKDLLEAARPDPEATFVMAHSYDGYTT 102 (180)
T ss_pred CeEEEEE-eecCC-ceEEEHHHHh-CCCCEEEEEEEEecCCCcccCcEEEeeEHHHHHHHcCCCCCCeEEEEEecCCceE
Confidence 4999999 99998 9999999999 8999 899875 36799999999999999862 2 2
Q ss_pred CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCC
Q psy11686 213 RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSP 271 (939)
Q Consensus 213 ~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~ 271 (939)
+||+++++++ |+||||||+.+ |||+|||+|| +|||++|+|++++.+||||++||+...+
T Consensus 103 ~ipl~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~~~~ 173 (180)
T cd02109 103 NLPLEDLLREDSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHERGD 173 (180)
T ss_pred EeEHHHhcCCCeEEEEeeCCeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccccCcCCCCC
Confidence 5999999986 99999999999 9999999999 9999999999999999999999997554
No 32
>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.87 E-value=1.7e-22 Score=209.89 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=103.0
Q ss_pred ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC---
Q psy11686 403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD--- 475 (939)
Q Consensus 403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d--- 475 (939)
|+++||++ ||+++++++++|+++ |+. |++|+||+|+|||+.||++++|++ +|.|
T Consensus 42 ltl~eL~~~lP~~~~~~~l~Cv~g---------------Ws~----~a~W~GV~L~dlLe~ag~~~~A~~V~f~~~d~~~ 102 (218)
T cd02107 42 LDIDDLMKTFPLEERIYRFRCVEG---------------WSM----VVPWVGFPLAALLARAEPTSEAKYVRFTTLLDKE 102 (218)
T ss_pred EEHHHHHhcCCCeEEEEEEEEeCC---------------Ccc----eeEEEeeEHHHHHHHcCCCCCCCEEEEEecCccc
Confidence 56667777 899999999999863 542 799999999999999999999988 4443
Q ss_pred --------------CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCcee
Q psy11686 476 --------------VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSY 529 (939)
Q Consensus 476 --------------~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y 529 (939)
.-.+++++ ++||++ +||||||+++|||||||||||+|+.. +|++.++++...|
T Consensus 103 ~~~g~~g~~~~~~~~Y~~slpl-~~Al~~~~LLAy~mNGepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyW 181 (218)
T cd02107 103 QMPGQSGLFGVLPWPYVEGLRL-DEAMHPLTLLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTW 181 (218)
T ss_pred cccCCccccccccCCcccceeH-HHhhCcccEEEeeeCCcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcc
Confidence 12467888 899997 99999999999999999999999654 7778877764443
Q ss_pred ecC--CC----CC-CCCCCccccccccceeecC
Q psy11686 530 NTQ--PE----NG-HPSGYQPRATLQGARLLTR 555 (939)
Q Consensus 530 ~~~--~~----~~-~~~~~~~i~~m~V~SlI~~ 555 (939)
... ++ .. .+.+-.|.++|.|+|+|+.
T Consensus 182 e~~~~~~~~~y~~~~~~~~~~~~~~~~~~~i~~ 214 (218)
T cd02107 182 NLAAPDEYGFYANVNPSVDHPRWSQATERRIGE 214 (218)
T ss_pred cccCcccccccccCCCCCCCCccccceeeeecc
Confidence 331 00 00 1122278999999999864
No 33
>COG2041 Sulfite oxidase and related enzymes [General function prediction only]
Probab=99.83 E-value=1.9e-20 Score=203.24 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=104.0
Q ss_pred EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc---cCccccHHHHHhCCCCCC-----------C----
Q psy11686 157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ---EDSKLAAKDIASDPYVME-----------P---- 211 (939)
Q Consensus 157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~---~~~~~~~~~vL~~~g~~d-----------~---- 211 (939)
|+|+|+ |+|++ |++||++||+ +||+ +|++||+. .|.|+++++||+.+|+.+ .
T Consensus 95 w~l~V~-G~V~~-p~~~t~~dl~-~~p~~~~~~~~~Cv~~Ws~~~~~W~Gv~l~~lL~~~~p~~~A~~V~f~~~d~~~y~ 171 (271)
T COG2041 95 WRLRVD-GLVEK-PLTLTYEDLL-ALPLEERIYTFHCVEGWSMVDAPWTGVPLRELLDRAGPKDNAKYVMFHSLDGPDYT 171 (271)
T ss_pred eEEEEe-eeecC-cceecHHHHh-hCCcccEEEEEEEecCceEeecceeeeeHHHHHHHhCcCCCCeEEEEEccCccccc
Confidence 999999 99999 9999999999 5999 99999983 799999999999999862 2
Q ss_pred CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccC
Q psy11686 212 VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFS 270 (939)
Q Consensus 212 ~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~ 270 (939)
.++||++||++ |+|||+|||++ |||+|||||+ +|||.+|+|++++..|||+..||....
T Consensus 172 ~~l~l~~a~~p~~llA~~~~G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~g 242 (271)
T COG2041 172 TGLPLDDALHPLTLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEYG 242 (271)
T ss_pred cCCCHHHhcCcHhhHHHHhcCccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhhcCccccC
Confidence 36999999999 99999999999 9999999999 999999999999999999999998754
No 34
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=99.82 E-value=8.4e-21 Score=186.82 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=77.7
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCC-CHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceecccccccCC-C
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHL-GTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVTTD-G 909 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~~~-~ 909 (939)
|+|||||||+|| ++++|+||++++ .++++.+++...+. +.+..+ +++..++..+ ||+++|+|.|+. +
T Consensus 20 ylVGG~VRD~Llg~~~~DiDi~v~~~~~~~~~~l~~~~~~-~~v~~~~~f~t~~v~~~~~~~----di~~~R~e~~~~~~ 94 (139)
T cd05398 20 YLVGGAVRDLLLGRPPKDIDIATDADGPEFAEALFKKIGG-RVVGLGEEFGTATVVINGLTI----DVATLRTETYTDPG 94 (139)
T ss_pred EEECChHHHHHcCCCCCCceEEEeCCCHHHHHHHHHhcCC-cEEecCCcccEEEEEECCEEE----EEcccccccccCCC
Confidence 899999999999 899999999999 77778888765442 444432 6777788888 999999999954 4
Q ss_pred CccccccCCCHHHHhhcCCchhhhcCccCC
Q psy11686 910 RHAEVQFTEDWKLDANRRDLTVNSMFLGMK 939 (939)
Q Consensus 910 r~~~v~~~~~l~~Dl~RRDFTINAma~~l~ 939 (939)
+++.+.. .++++||.||||||||||+++.
T Consensus 95 ~~p~~~~-~~~~~Dl~RRDFTINAmA~~~~ 123 (139)
T cd05398 95 RRPPVVG-FTIEEDLLRRDFTINAMAYDLD 123 (139)
T ss_pred CCCcccC-CCCHHHHhhcCcchhheEecCC
Confidence 5544444 4788999999999999999973
No 35
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=99.81 E-value=4.2e-21 Score=195.35 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=86.3
Q ss_pred eEEEEEeecccCCcceeeeHHHHHHhccc-------eeccc------c------CccCccccHHHHHhCCCCC-------
Q psy11686 156 SSTITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGN------I------SQEDSKLAAKDIASDPYVM------- 209 (939)
Q Consensus 156 ~w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn------~------~~~~~~~~~~~vL~~~g~~------- 209 (939)
+|+|+|+ |+|++ |.+||++||+ +||+ +|++| + ...|+|+++++||+.+|+.
T Consensus 14 ~~~l~V~-G~v~~-~~~ltl~dL~-~lp~~~~~~~~~c~~~~~~~~~w~~~~i~~~~~~GV~L~dlL~~ag~~~~a~~V~ 90 (169)
T PF00174_consen 14 SWTLTVS-GLVEN-PLTLTLADLK-ALPQVTQTVTLHCVGNRRAGFPWSAGAIGNAEWTGVPLSDLLEKAGIKPDAKYVV 90 (169)
T ss_dssp T-EEEEE-ESBSS-EEEEEHHHHH-HS-EEEEEEEEEETTTTHHSHHCCSTSEEEEEEEEEEHHHHHHHHTB-TT-EEEE
T ss_pred CEEEEEE-eecCC-ceEecHHHHh-CCcCeEEEEEEEecCCCccCccccccceeeeeeEEEcHHHHHHHcCCCCCccEEE
Confidence 3999999 99998 9999999999 8999 89999 4 3479999999999999986
Q ss_pred ----C-------CC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccc
Q psy11686 210 ----E-------PV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQ 263 (939)
Q Consensus 210 ----d-------~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~ 263 (939)
| +| ++|++++++. |+|||+||+.+ |+|+|||+|+ ||||++|+|++++++||||+
T Consensus 91 ~~~~D~~~~~~~gY~~~l~~~~~~~~~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we~ 169 (169)
T PF00174_consen 91 FTGADGYPMTHDGYSVSLPLEDALEEDVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWEE 169 (169)
T ss_dssp EEESCETTCTTSSEEEEEEHHHHHSTCSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHHH
T ss_pred EEEcCCCcccCCCeEEEEEHHHhhcCCeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCccC
Confidence 3 32 5999999996 99999999999 9999999999 99999999999999999985
No 36
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=99.81 E-value=2.7e-20 Score=180.39 Aligned_cols=96 Identities=20% Similarity=0.321 Sum_probs=73.6
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceecccccccC-CCC
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVTT-DGR 910 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~~-~~r 910 (939)
|||||||||+|| ++++|+||++++.|+++.+.+..... .....+ +++..++..+ ||+++|.|.|. +++
T Consensus 2 ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----di~~~r~~~~~~~~~ 76 (126)
T PF01743_consen 2 YLVGGAVRDLLLGRPPKDIDIVTNADPEEFAKLLAKKLG-GVFVVGKRFGTVRVVFGGGSI----DIASFRGEFYIGDGR 76 (126)
T ss_dssp EEETHHHHHHHHTS--SEEEEEESS-HHHHHHHHCTTCC-EEEEEETTTTEEEEEETTCEE----EEEE-ECE--SSSSS
T ss_pred EEecHHHHHHHcCCCCCCeEEEEeCCHHHHHHHHHhhcc-cccccccccceeeecCCCccc----ccccccccccccccc
Confidence 799999999999 89999999999999999999987653 222223 7777777777 99999999884 455
Q ss_pred cc-ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 911 HA-EVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 911 ~~-~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
++ .+.+..++++||+||||||||||+++
T Consensus 77 ~~~~~~~~~~i~~Dl~rRDFTiNAla~~~ 105 (126)
T PF01743_consen 77 NPDVVEFGPTIEEDLKRRDFTINALAYDL 105 (126)
T ss_dssp --CCCCCSSTHHHHHCTSSBGGGSEEEEC
T ss_pred ccccccccCCHHHHHHhcCCeehheeEEC
Confidence 53 45667799999999999999999985
No 37
>KOG0537|consensus
Probab=99.79 E-value=7.4e-20 Score=175.16 Aligned_cols=83 Identities=30% Similarity=0.656 Sum_probs=76.4
Q ss_pred CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI 97 (939)
Q Consensus 19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l 97 (939)
..++|+.+||++||++ ++|||+|+|+|||||.|+++|||| +.|+.+||+|++.+| ...+||..|++||++|+||.+
T Consensus 3 ~~k~~~~~EV~kHn~~-~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F--~~~gHS~~A~~ml~~y~ig~~ 79 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKK-DDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAF--EDVGHSKDAREMLEEYYIGEV 79 (124)
T ss_pred ccccccHHHHHhhcCC-CCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhc--cccCCcHHHHHHhhhcccccc
Confidence 5689999999999987 599999999999999999999999 999999999999888 467799999999999999999
Q ss_pred Cccchhh
Q psy11686 98 SQEDSKL 104 (939)
Q Consensus 98 ~~~~~~~ 104 (939)
.+.+...
T Consensus 80 ~~~~~~~ 86 (124)
T KOG0537|consen 80 PTTARPV 86 (124)
T ss_pred cCCCccc
Confidence 8877643
No 38
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=6.5e-20 Score=212.11 Aligned_cols=92 Identities=21% Similarity=0.346 Sum_probs=82.7
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceeccccccc-CCCC
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVT-TDGR 910 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~-~~~r 910 (939)
|||||||||+|| ++++|+||+|++.|+++..++... .++| +++..+|+.+ ||+|||+++| ++++
T Consensus 26 ylVGGaVRD~LLG~~~~D~Diat~~~p~~~~~~~~~~-----~~~G~~f~t~~v~~~~~~~----ev~T~R~~~~~~~~~ 96 (412)
T COG0617 26 YLVGGAVRDLLLGRPPKDVDIATNATPEEVKKLFRNT-----RPVGRKFGTVTVPFNGEII----EVTTFRKEGYGYNGR 96 (412)
T ss_pred EEeCcHHHHHHcCCCCcceeeeCCCCCHHHHHHHhhh-----hhhhhhcCeEEeccCCEEE----EEEEeecCCCCcCCC
Confidence 999999999999 899999999999999999999822 2233 7777777777 9999999996 8899
Q ss_pred ccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 911 HAEVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 911 ~~~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
+.++++..+|++||.||||||||||||.
T Consensus 97 ~~~~~~~~tleeDl~RRDFTINAla~~~ 124 (412)
T COG0617 97 PLPVVFPGTLEEDLKRRDFTINALAYDP 124 (412)
T ss_pred cCCcCCCCCHHHHHHHhcccHHhhccCC
Confidence 9999999999999999999999999875
No 39
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=99.78 E-value=1.3e-19 Score=212.17 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=84.3
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceecccccccC-CCC
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVTT-DGR 910 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~~-~~r 910 (939)
|+|||||||+|| ++++|+||+|++.|+++.++|...+. +++++| +++..+|..+ |||++|+|.|+ ++|
T Consensus 31 y~VGG~VRD~llg~~~~D~Di~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~v~~~~~~~----ei~~~r~e~~~~~~~ 105 (466)
T TIGR02692 31 YLVGGSVRDALLGRLGHDLDFTTDARPEETLAILRPWAD-AVWDTGIAFGTVGAEKDGQQI----EITTFRSDSYDGTSR 105 (466)
T ss_pred EEeCcHHHHHHcCCCCCCEEEEeCCCHHHHHHHHHHhhh-hccccCcccceEEEEECCcEE----EEEecccccCcCCCC
Confidence 999999999999 89999999999999999999976542 444444 6777788888 99999999984 566
Q ss_pred ccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 911 HAEVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 911 ~~~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
++.|.|+.+|++||+||||||||||+|+
T Consensus 106 ~~~v~~~~~i~~Dl~rRDFTiNA~a~~~ 133 (466)
T TIGR02692 106 KPEVTFGDTLEGDLIRRDFTVNAMAVRI 133 (466)
T ss_pred CCcccCCCCHHHHHHhccccHHHhhccc
Confidence 6889999999999999999999999987
No 40
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.77 E-value=4e-19 Score=203.02 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=80.6
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCce-eeee-EEEEEcCeeeccccceeccccc-ccCCCCc-c
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRS-MPIP-FTLLFSANFFRNLARITTLRID-VTTDGRH-A 912 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~eitt~R~e-~~~~~r~-~ 912 (939)
|+|||||||+|| ++++|+||+|++.|+++.+.|.... .. ...| +++..+|..+ ||+|+|.| .|+|+|+ .
T Consensus 24 ylVGG~VRD~LLg~~~~DiDi~~~~~~~~~~~~~~~~~--~~g~~~gt~~v~~~~~~~----ei~t~R~e~~~~d~~~p~ 97 (394)
T PRK13299 24 YFVGGSVRDYLLGRPIHDVDIATSAYPEEVKAIFPRTV--DVGIEHGTVLVLENGEEY----EVTTFRTESEYVDYRRPS 97 (394)
T ss_pred eeccchHHHHHcCCCCCCEEEecCCCHHHHHHHhhhhh--hccccCCEEEEEECCEEE----EEEeeccccCccCCCCCc
Confidence 999999999999 8999999999999999999887321 11 1123 6777788888 99999998 5678888 5
Q ss_pred ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 913 EVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 913 ~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
.+.|..+|++||.||||||||||+++
T Consensus 98 ~~~~~~~i~eDl~RRDFTINAma~~~ 123 (394)
T PRK13299 98 EVTFVRSLEEDLKRRDFTINAIAMDE 123 (394)
T ss_pred cccCCCCHHHHHHhccccHHHhhcCC
Confidence 67888999999999999999999986
No 41
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=99.76 E-value=6.8e-19 Score=201.44 Aligned_cols=96 Identities=16% Similarity=0.262 Sum_probs=75.6
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-EEEEEcCeeeccccceecccccccC-CCCccc-
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-FTLLFSANFFRNLARITTLRIDVTT-DGRHAE- 913 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~eitt~R~e~~~-~~r~~~- 913 (939)
|||||||||+|| ++|+|+||+|++.|+++.++|..++.+. ...+ +++.+++..+ ||+|||.+.+. +++++.
T Consensus 70 YLVGG~VRDlLLG~~pkD~DIaT~A~peev~~lf~~~r~iG-rrF~~~hV~~~~~~i----EVaTfR~~~~~~~~~~~~~ 144 (472)
T PRK11623 70 YLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVG-RRFRLAHVMFGPEII----EVATFRGHHEGNESDRNTS 144 (472)
T ss_pred EEeChHHHHHHcCCCCCCEEEecCCCHHHHHHHhhhCeeec-CCCCEEEEEECCceE----EEecccccccccccccccc
Confidence 999999999999 8999999999999999999997544211 0111 6777888888 99999998653 233211
Q ss_pred ----------cccCCCHHHHhhcCCchhhhcCccC
Q psy11686 914 ----------VQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 914 ----------v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
..+..+|++||.||||||||||||+
T Consensus 145 ~~~~~g~~~rdn~~gtieeDl~RRDFTINALayd~ 179 (472)
T PRK11623 145 QRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSV 179 (472)
T ss_pred ccCCCCceecccCCCCHHHHHHhccccHHHheecC
Confidence 1234589999999999999999996
No 42
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=99.75 E-value=2.3e-19 Score=182.59 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=94.5
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC----
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD---- 475 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d---- 475 (939)
|+++||++||+++..++++|++|+|+ |.+|+.|+||+++|+||+|+|||++||+++++.+ .|.|
T Consensus 29 ltl~dL~~lp~~~~~~~~~c~~~~~~---------~~~w~~~~i~~~~~~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~ 99 (169)
T PF00174_consen 29 LTLADLKALPQVTQTVTLHCVGNRRA---------GFPWSAGAIGNAEWTGVPLSDLLEKAGIKPDAKYVVFTGADGYPM 99 (169)
T ss_dssp EEHHHHHHS-EEEEEEEEEETTTTHH---------SHHCCSTSEEEEEEEEEEHHHHHHHHTB-TT-EEEEEEESCETTC
T ss_pred ecHHHHhCCcCeEEEEEEEecCCCcc---------CccccccceeeeeeEEEcHHHHHHHcCCCCCccEEEEEEcCCCcc
Confidence 56667777899999999999999985 8899999999999999999999999999988877 7888
Q ss_pred ---CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceee
Q psy11686 476 ---VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYN 530 (939)
Q Consensus 476 ---~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~ 530 (939)
.-+.++++ +.|++. +|||+||+++||+|+|+|+|+.++ ..+|++.+.+....|+
T Consensus 100 ~~~gY~~~l~~-~~~~~~~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we 168 (169)
T PF00174_consen 100 THDGYSVSLPL-EDALEEDVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWE 168 (169)
T ss_dssp TTSSEEEEEEH-HHHHSTCSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHH
T ss_pred cCCCeEEEEEH-HHhhcCCeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCcc
Confidence 55688888 788885 999999999999999999998874 4699999888766553
No 43
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=99.73 E-value=2.6e-18 Score=194.49 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=77.2
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-EEEEEcCeeeccccceeccccccc----CCCCc
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-FTLLFSANFFRNLARITTLRIDVT----TDGRH 911 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~eitt~R~e~~----~~~r~ 911 (939)
|||||||||+|| ++++|+||+|++.|+++.++|.....+.. ..+ +++.+++..+ ||+|||.+.+ .+++.
T Consensus 33 YlVGG~VRDlLLG~~pkD~DIat~a~peei~~lf~~~~~iG~-rf~~~~v~~~~~~i----EvatfR~~~~~~~~~~g~~ 107 (410)
T TIGR01942 33 YIVGGAVRDLLLGIEPKDFDVVTSATPEEVRKLFRNSRIVGR-RFRLVHVSFGRQII----EVATFRSGHKSSVNAEGRI 107 (410)
T ss_pred EEECHHHHHHHcCCCCCCEEEEcCCCHHHHHHHhhhCeecCC-CCCEEEEEECCEEE----EEecccccccCCCCCCCCc
Confidence 999999999999 89999999999999999999975432110 011 7777888888 9999999643 34555
Q ss_pred cccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 912 AEVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 912 ~~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
.......+|++||.||||||||||||+
T Consensus 108 ~~d~~~gtieeDl~RRDFTINALayd~ 134 (410)
T TIGR01942 108 LKDNVYGTLEEDAWRRDFTVNALYYDP 134 (410)
T ss_pred ccccccCCHHHHhhcCCchhhheeecC
Confidence 444445799999999999999999986
No 44
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=99.71 E-value=1e-17 Score=182.01 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=99.4
Q ss_pred ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC---
Q psy11686 403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD--- 475 (939)
Q Consensus 403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d--- 475 (939)
|+++||++ +|+++++++++|+.+ |+ +|+.|+||+|+|||++||+++.|++ ++.+
T Consensus 116 ltldDL~~~~P~~eri~~l~CVeg---------------Ws----~~~~W~GvpL~dLLe~agp~~~AkyV~f~s~~d~~ 176 (319)
T PRK05363 116 LDIDDLLKLFPLEERIYRLRCVEA---------------WS----MVIPWIGFPLAKLLKRVEPTSNAKYVAFETLYDPE 176 (319)
T ss_pred EEHHHHHhcCCCeEEEEEEEEcCC---------------Cc----eeeEEEeeEHHHHHHHcCCCCCCcEEEEEecCccc
Confidence 44455555 678899999999863 55 3899999999999999999999987 4421
Q ss_pred -----------C-ceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec
Q psy11686 476 -----------V-QHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT 531 (939)
Q Consensus 476 -----------~-~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~ 531 (939)
. -..++++ ++||++ +|||||||++||+|||+||||+||.. +|++.+++..+.|+.
T Consensus 177 ~~~g~~~~~~~~pY~~~LpL-~eAm~p~tlLA~~mnGepLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~ 255 (319)
T PRK05363 177 QMPGQRSRFLDWPYVEGLRL-DEAMHPLTLLAVGLYGKTLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNL 255 (319)
T ss_pred cccCCcccccCCCeeccccH-HHHhCccceehhhhCCcCCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhc
Confidence 0 2256776 899987 99999999999999999999999754 777877766444443
Q ss_pred C-C------CCCCCCCCccccccccceeecC
Q psy11686 532 Q-P------ENGHPSGYQPRATLQGARLLTR 555 (939)
Q Consensus 532 ~-~------~~~~~~~~~~i~~m~V~SlI~~ 555 (939)
. + .+..+..--|.|.++..+.|+.
T Consensus 256 ~~~~eygfyanvnp~v~hPrwsqa~er~ig~ 286 (319)
T PRK05363 256 LAPNEYGFYANVNPNVDHPRWSQATERRIGE 286 (319)
T ss_pred cCccccceeeecCCCCCCCccccchhceecc
Confidence 1 0 1111223357888899999886
No 45
>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=99.66 E-value=9.6e-17 Score=164.52 Aligned_cols=110 Identities=16% Similarity=0.262 Sum_probs=92.4
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCCcee
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADVQHV 479 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~~~~ 479 (939)
|++++|++||+++++.+++|+++ |+ ++|++|+||+|+|||++||+++++.+ .+.|.-..
T Consensus 41 ltl~dL~~lp~~~~~~~~~C~~~---------------w~---~~~~~w~Gv~L~dlL~~ag~~~~a~~V~~~a~DgY~~ 102 (180)
T cd02109 41 LTYEDLLALPQTEYTADFHCVTG---------------WS---KLDVVWEGVSLKDLLEAARPDPEATFVMAHSYDGYTT 102 (180)
T ss_pred EEHHHHhCCCCEEEEEEEEecCC---------------Cc---ccCcEEEeeEHHHHHHHcCCCCCCeEEEEEecCCceE
Confidence 56666677899999999999974 54 57899999999999999999987766 78887778
Q ss_pred eEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec
Q psy11686 480 HVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT 531 (939)
Q Consensus 480 ~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~ 531 (939)
++++ +.|++. +||||||+.+||+|+|+|+||++|.. +|++.+.+....|..
T Consensus 103 ~ipl-~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~ 165 (180)
T cd02109 103 NLPL-EDLLREDSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWER 165 (180)
T ss_pred EeEH-HHhcCCCeEEEEeeCCeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccc
Confidence 8998 788875 99999999999999999999998753 777887776555554
No 46
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.66 E-value=6.1e-17 Score=178.66 Aligned_cols=92 Identities=23% Similarity=0.346 Sum_probs=66.0
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCH-HHHHH-HhhhcCCCceeeeeEEEEEcCeeeccccceeccccccc-CCCCc-c
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGT-DETFA-TLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVT-TDGRH-A 912 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~eitt~R~e~~-~~~r~-~ 912 (939)
|+|||||||+|| ++++|+||++.+.+ ++..+ .+. .+.+.++ + ++..+..+ |++++|.|.| .++++ .
T Consensus 4 YLVGGaVRD~LLgr~p~DiDivV~g~~~~~~l~~~~~--~vg~~f~--V-~~~~~~~~----Eiat~R~E~~~~~g~~~~ 74 (360)
T PRK13296 4 YLVGGAVRDMLLGITPKDKDWVVVGATEDEMLANGFI--KIAANFP--V-FIHPQTKQ----EYALARSEKKTASGYHGF 74 (360)
T ss_pred EEeccHHHHHHcCCCCCCeeEEecCCcHHHHHHhhhh--hcCCceE--E-EEECCeeE----EEeeccccccccCCCCCC
Confidence 899999999999 89999999876554 33322 222 2111221 1 22344455 9999999988 45565 4
Q ss_pred ccccCC--CHHHHhhcCCchhhhcCccC
Q psy11686 913 EVQFTE--DWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 913 ~v~~~~--~l~~Dl~RRDFTINAma~~l 938 (939)
.|.++. +|++||.||||||||||+|+
T Consensus 75 ~v~~~~~~tieeDL~RRDFTINAmA~d~ 102 (360)
T PRK13296 75 EVNFSKYITLEDDLKRRDLTINSIAIDQ 102 (360)
T ss_pred eEeeCCCCCHHHHHHhcCcceeeeEECC
Confidence 577754 69999999999999999985
No 47
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.64 E-value=1.6e-16 Score=159.67 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=86.1
Q ss_pred eEEEEEeecccCCcceeeeHHHHHHhccc-------eecccc-------CccCccccHHHHHhCCCCC------------
Q psy11686 156 SSTITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNI-------SQEDSKLAAKDIASDPYVM------------ 209 (939)
Q Consensus 156 ~w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~-------~~~~~~~~~~~vL~~~g~~------------ 209 (939)
+|+|+|+ |.|++ |.+||++||+ +||+ +|++|+ ...|+|+++++||+.+|+.
T Consensus 16 ~w~l~v~-G~v~~-~~~~tl~eL~-~lp~~~~~~~~~c~~n~~~~~~~~~~~~~Gv~L~~lL~~ag~~~~~~~v~~~a~d 92 (156)
T cd00321 16 DWRLEVD-GLVEK-PLSLTLDDLK-ALPQVEVIATLHCVGNRWGGGAVSNAEWTGVPLRDLLEEAGPKPGARYVVFEGAD 92 (156)
T ss_pred CeEEEEE-eecCC-CeEEEHHHHh-cCCCEEEEEEEEECCCCCCCccEeccEEEEEEHHHHHHHcCCCCCCeEEEEEeeC
Confidence 3999999 99998 9999999999 8999 899852 3567899999999999975
Q ss_pred ----CCC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeec
Q psy11686 210 ----EPV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDH 255 (939)
Q Consensus 210 ----d~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~ 255 (939)
|+| ++|++++++. |+||||||+.+ |+|+|||+|+ +|||++|+|+++
T Consensus 93 ~~~~dgY~~~i~~~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~g~k~vK~v~~Iev~~~ 156 (156)
T cd00321 93 DPGGDGYTTSLPLEKALDPDVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVKWLRRIEVTDE 156 (156)
T ss_pred CCCCCCEEEEEEHHHhhCCCCEEEeeeCCeECchhhCCceEEEcCCceeeEcceeeeEEEEEcC
Confidence 123 4999999976 99999999999 9999999999 999999999874
No 48
>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=99.64 E-value=1.2e-16 Score=164.24 Aligned_cols=104 Identities=19% Similarity=0.338 Sum_probs=85.1
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCC-----
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSA----- 474 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~----- 474 (939)
|++++|++||+++++++++|+++ |+ ++++|+||+|+|||++||+++.+++ .+.
T Consensus 43 ltl~dL~~lp~~~~~~~~~Cv~g---------------ws----~~~~w~Gv~L~dlL~~ag~~~~a~~V~~~a~d~~~~ 103 (185)
T cd02108 43 LSLEELRALPQRTQITRHICVEG---------------WS----AIGKWGGVPLRTILELVGPLPEAKYVVFKCADDFAG 103 (185)
T ss_pred EEHHHHhCCCCEEEEEEEEEcCC---------------Cc----eEEEEEEEEHHHHHHHhCCCCCCcEEEEEecCcCCC
Confidence 56666777899999999999863 43 2579999999999999999988765 565
Q ss_pred -CCceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcC
Q psy11686 475 -DVQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVD 526 (939)
Q Consensus 475 -d~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~ 526 (939)
|.-.+++++ ++|+++ +||||||+++||+|+|+||||+++.. +|++.+.+..
T Consensus 104 ~~~Y~~sipl-~~~~~~~~iLA~~~nGepL~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~ 167 (185)
T cd02108 104 GDRYYESIDM-ASALHPQTLLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVNDLPG 167 (185)
T ss_pred CCCeEEEEEH-HHhcCCCcEEEEeeCCeECChhcCceEEEEcCCcccccCceEccEEEEEeccCc
Confidence 445588898 888876 99999999999999999999999765 6666666554
No 49
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=99.63 E-value=4.4e-17 Score=157.95 Aligned_cols=103 Identities=26% Similarity=0.285 Sum_probs=74.9
Q ss_pred cccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCe--EEeecccCeEEE-------EE
Q psy11686 544 RATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGY--QLRIAGEGTVTA-------KV 613 (939)
Q Consensus 544 i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~--~~~~~~~g~~~~-------~v 613 (939)
+++..||++ |++++.|+|+.+.+.++ + +...+...+. ...+..++++++ ++
T Consensus 3 lVGG~VRD~Llg~~~~DiDi~~~~~~~----------------~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di 63 (126)
T PF01743_consen 3 LVGGAVRDLLLGRPPKDIDIVTNADPE----------------E---FAKLLAKKLGGVFVVGKRFGTVRVVFGGGSIDI 63 (126)
T ss_dssp EETHHHHHHHHTS--SEEEEEESS-HH----------------H---HHHHHCTTCCEEEEEETTTTEEEEEETTCEEEE
T ss_pred EecHHHHHHHcCCCCCCeEEEEeCCHH----------------H---HHHHHHhhcccccccccccceeeecCCCccccc
Confidence 456678887 79999999999887777 4 4444443331 234777887654 58
Q ss_pred EeeccCCCC-----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCccc
Q psy11686 614 LSYRNRREK-----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCA 668 (939)
Q Consensus 614 ~tfr~~~~~-----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR 668 (939)
++||.+... .+++++||.||||||||||+++ ..|+|+|||||++||++|+||
T Consensus 64 ~~~r~~~~~~~~~~~~~~~~~~~i~~Dl~rRDFTiNAla~~~---~~~~liDp~gG~~DL~~~~iR 126 (126)
T PF01743_consen 64 ASFRGEFYIGDGRNPDVVEFGPTIEEDLKRRDFTINALAYDL---ETGKLIDPFGGLEDLKNKIIR 126 (126)
T ss_dssp EE-ECE--SSSSS--CCCCCSSTHHHHHCTSSBGGGSEEEEC---TTTCEEESSSHHHHHHTTEE-
T ss_pred cccccccccccccccccccccCCHHHHHHhcCCeehheeEEC---CCCeEEcCCCCHHHHHcCCCC
Confidence 899975321 2389999999999999999997 789999999999999999998
No 50
>PHA01806 hypothetical protein
Probab=99.60 E-value=8.2e-16 Score=153.87 Aligned_cols=108 Identities=11% Similarity=0.003 Sum_probs=74.7
Q ss_pred hHHHHhhhhccccccccchhhHHHHh------hhhcCcchhhhc-CCCCcEEEecC-CCHHHHHHHhhhcCCCceeeee-
Q psy11686 812 EVLSAIKKNLDGLHNISGERIWTELN------KILGGSFSKEMM-LKMLEINMFPH-LGTDETFATLDFEGLFRSMPIP- 882 (939)
Q Consensus 812 ~ll~ai~~i~~~L~~l~~eri~~~L~------~iVGG~VRD~LL-~~~~D~Di~~~-~~~~~~~~~~~~~~~~~~~~~~- 882 (939)
.+|+-++++...........+...|. |+|||+|||+|| ++++|+||+|+ +.|+++.++....+. +.++..
T Consensus 7 ~~l~~~~~I~~~~is~~al~v~~~l~~~g~~aYlVGG~VRD~Llgr~~kDiDivt~~~~pe~v~~L~~klG~-k~V~~~~ 85 (200)
T PHA01806 7 DLLEGTKEIPEGLIAKALLLRLYSDARHSEGVALAGGAARDLMHGAEPKDIDIALYGMDDRQAELLIGCILP-KLVSRFL 85 (200)
T ss_pred hHhcCccccChhHcCHHHHHHHHHHHHCCcEEEEECchHHHHHcCCCCCceEEEccCCCHHHHHHHHHHhCC-ccccccc
Confidence 34444455544443334444444444 999999999999 89999999995 789888887764442 322221
Q ss_pred ----EE---------------------EEEcCeeeccccceecccccccCCCCccccccCCCHHHHhhcCCchhh--hcC
Q psy11686 883 ----FT---------------------LLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVN--SMF 935 (939)
Q Consensus 883 ----~~---------------------~~~~~~~~~~~~eitt~R~e~~~~~r~~~v~~~~~l~~Dl~RRDFTIN--Ama 935 (939)
.. ++++|..+ ||+.++.+ +|++||.||||||| |||
T Consensus 86 ~~ggwr~~~~~~gd~~~~~~~~~l~g~~vl~g~tv----D~A~~~g~--------------sleeDL~rRDFTINq~AIA 147 (200)
T PHA01806 86 RDGGWSQEYHDGGDGGIFKGVVSLKGCRGLEGMDV----DFNYYDTD--------------SVGEVMESFDYTINQVGIA 147 (200)
T ss_pred ccceeeeeccccccccccccceeeeeeEEeCCeEE----EeeeccCC--------------CHHHHHHHcCCccchhhhc
Confidence 11 34456666 88887776 89999999999999 777
Q ss_pred ccC
Q psy11686 936 LGM 938 (939)
Q Consensus 936 ~~l 938 (939)
|++
T Consensus 148 ~~~ 150 (200)
T PHA01806 148 YNW 150 (200)
T ss_pred ccC
Confidence 765
No 51
>KOG4576|consensus
Probab=99.59 E-value=4.3e-16 Score=145.60 Aligned_cols=86 Identities=47% Similarity=0.981 Sum_probs=81.7
Q ss_pred CCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686 18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI 97 (939)
Q Consensus 18 ~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l 97 (939)
++++.|+.+||++|++++++.||.+...|||||+|+..||||+.|+.+||.++++||..|..|...++.++|+.|+||+|
T Consensus 77 E~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L 156 (167)
T KOG4576|consen 77 ESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGEL 156 (167)
T ss_pred hhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccchh
Q psy11686 98 SQEDSK 103 (939)
Q Consensus 98 ~~~~~~ 103 (939)
++.+..
T Consensus 157 ~~~dv~ 162 (167)
T KOG4576|consen 157 NPEDVV 162 (167)
T ss_pred Chhhcc
Confidence 888753
No 52
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.57 E-value=1.1e-15 Score=134.63 Aligned_cols=74 Identities=28% Similarity=0.571 Sum_probs=65.4
Q ss_pred CcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhc-CcccccC
Q psy11686 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLES-YRIGNIS 98 (939)
Q Consensus 22 ~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~-~~VG~l~ 98 (939)
+||++||++||+. ++|||+|+|+|||||+|+..|||| ..+..++|+|+|..|. ...|+..+.++|++ |+||.|+
T Consensus 1 ~~t~~el~~h~~~-~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~--~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKK-GDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFE--EAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEET-TEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHH--HHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCC-CCEEEEECCEEcccccccccccchhHHHHHhccccccHHHh--hccCcHHHHHHccCCCEEEEeC
Confidence 4899999999965 699999999999999999999999 8888899999999982 23478889999998 9999874
No 53
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.57 E-value=1.2e-15 Score=169.91 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=65.4
Q ss_pred hhhcCcchhhhc-CCCCcEEEec-CCCHHHHHHHhhhcCCCceeeee--EEEEE-cCeeeccccceecccccccCCCCcc
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFP-HLGTDETFATLDFEGLFRSMPIP--FTLLF-SANFFRNLARITTLRIDVTTDGRHA 912 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~eitt~R~e~~~~~r~~ 912 (939)
|+|||||||+|| ++++|+|+++ .+.|+++.+. + ..+.| +.++. .+.. .|++++|+|.|+..++.
T Consensus 15 YlVGGaVRD~LLg~~~~D~D~vv~ga~pe~l~~~----~---~~~vG~~f~v~l~~~~~----~e~a~aRterk~g~g~~ 83 (364)
T PRK13297 15 YIVGGAVRDALLGLPAGDRDWVVVGATPEDMARR----G---FIPVGGDFPVFLHPRTK----EEYALARTERKSGRGYK 83 (364)
T ss_pred EEeCcHHHHHHcCCCCCCeeeeccCChHHHHHhc----C---ceeeCCEEEEEEeCCce----EEEEEEEEeeccCCCCc
Confidence 899999999999 8999999865 5778887663 1 12223 22332 2233 39999999988654443
Q ss_pred cccc-C---CCHHHHhhcCCchhhhcCccC
Q psy11686 913 EVQF-T---EDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 913 ~v~~-~---~~l~~Dl~RRDFTINAma~~l 938 (939)
.+++ . .+|++||.||||||||||+|.
T Consensus 84 ~f~~~~~~~~tLeeDL~RRDFTINAmA~~~ 113 (364)
T PRK13297 84 GFTFYTGADVTLEQDLQRRDLTVNAIARTP 113 (364)
T ss_pred eeEEeCCCCCCHHHHHHhccceeeeeEECC
Confidence 3333 2 389999999999999999974
No 54
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=99.56 E-value=2.5e-15 Score=151.07 Aligned_cols=102 Identities=27% Similarity=0.436 Sum_probs=87.2
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCC-----
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSA----- 474 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~----- 474 (939)
|++++|+++|+++.+.+++|++|+ |+.+.+++++|+||+|++||++||+..++.+ .+.
T Consensus 31 ~tl~eL~~lp~~~~~~~~~c~~n~--------------~~~~~~~~~~~~Gv~L~~lL~~ag~~~~~~~v~~~a~d~~~~ 96 (156)
T cd00321 31 LTLDDLKALPQVEVIATLHCVGNR--------------WGGGAVSNAEWTGVPLRDLLEEAGPKPGARYVVFEGADDPGG 96 (156)
T ss_pred EEHHHHhcCCCEEEEEEEEECCCC--------------CCCccEeccEEEEEEHHHHHHHcCCCCCCeEEEEEeeCCCCC
Confidence 667777788999999999999996 8889999999999999999999999987766 676
Q ss_pred CCceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEEEEE
Q psy11686 475 DVQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRVRVE 519 (939)
Q Consensus 475 d~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~~i~ 519 (939)
|.-..++++ +.+++. +|||+||+.+||+|+|+|+|+.++...++
T Consensus 97 dgY~~~i~~-~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~g~k~vK 146 (156)
T cd00321 97 DGYTTSLPL-EKALDPDVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVK 146 (156)
T ss_pred CCEEEEEEH-HHhhCCCCEEEeeeCCeECchhhCCceEEEcCCceeeEcce
Confidence 566678887 666654 99999999999999999999887655333
No 55
>KOG0536|consensus
Probab=99.55 E-value=3.6e-15 Score=139.84 Aligned_cols=76 Identities=25% Similarity=0.505 Sum_probs=67.7
Q ss_pred CCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccccCc
Q psy11686 21 PWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQ 99 (939)
Q Consensus 21 ~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l~~ 99 (939)
..+|.+||++||+. +|||++|+|+|||||.|++.|||| +.|+.++|+|++.+|+ ..|..-+-.++|+.++||.+.+
T Consensus 68 i~vt~~El~KH~~~-dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fn--k~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 68 IPVTAEELKKHNKK-DDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFN--KYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CccCHHHHHhhCCc-cceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHH--HHHHHhcHHHHHhhceeeeecc
Confidence 47999999999998 599999999999999999999999 9999999999999985 3455677778999999998754
No 56
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.55 E-value=3.2e-15 Score=170.03 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=63.9
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCC-CHHHHHHH-hhhcCCCceeeeeEEEEEcCeeeccccceecccccccCCC-Cc--
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHL-GTDETFAT-LDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDG-RH-- 911 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~eitt~R~e~~~~~-r~-- 911 (939)
|+|||||||.|| ++++|+|+++.+ .|+++.+. +...| +.+++ ++...... |++++|+|.++.. .+
T Consensus 4 YlVGGaVRD~LLg~~~~D~D~vv~g~~~~~~~~~~~~~vG--~~f~v---~l~~~~~~----e~a~aRter~~g~g~~g~ 74 (417)
T PRK13298 4 YLVGGAVRDSLLNLPVKDKDWVVVGGTPKILLSINFQQVG--KDFPV---FLHPETHE----EYALARTERKSGVGYTGF 74 (417)
T ss_pred EEEccHHHHHHcCCCCCCeeEEecCCCHHHHHHHHHHHhC--CeeEE---EEeCceeE----EEEeecccccccCCCCCc
Confidence 899999999999 899999998765 57765442 22111 22222 22233333 9999999977432 22
Q ss_pred -cccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 912 -AEVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 912 -~~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
..+....+|++||.||||||||||+|.
T Consensus 75 ~~~~~~~~tleeDL~RRDFTINAmA~~~ 102 (417)
T PRK13298 75 ITDTSSDVTLEEDLIRRDLTINAIAQDE 102 (417)
T ss_pred ccccCCCCCHHHHHHhcccceeeeEECC
Confidence 223344599999999999999999985
No 57
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=99.52 E-value=7.3e-15 Score=144.76 Aligned_cols=100 Identities=26% Similarity=0.256 Sum_probs=74.2
Q ss_pred ccccccccee-ecCCCCCCccccCC-CCCcccccCCCcccccchhHHHHHHHHHHhhCeEEee--cccCeEE-------E
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRFKS-GPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRI--AGEGTVT-------A 611 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t~a-~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~--~~~g~~~-------~ 611 (939)
-+++..||++ +++++.|+|+++.+ .++ .++++++. .|...+. ..||+++ +
T Consensus 20 ylVGG~VRD~Llg~~~~DiDi~v~~~~~~----------------~~~~l~~~---~~~~~v~~~~~f~t~~v~~~~~~~ 80 (139)
T cd05398 20 YLVGGAVRDLLLGRPPKDIDIATDADGPE----------------FAEALFKK---IGGRVVGLGEEFGTATVVINGLTI 80 (139)
T ss_pred EEECChHHHHHcCCCCCCceEEEeCCCHH----------------HHHHHHHh---cCCcEEecCCcccEEEEEECCEEE
Confidence 4677889987 69999999999887 444 44444432 3333333 4677654 4
Q ss_pred EEEeeccCCCC---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhc
Q psy11686 612 KVLSYRNRREK---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKK 664 (939)
Q Consensus 612 ~v~tfr~~~~~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~ 664 (939)
++++||.+... ..++++||.||||||||||+++ ..|+|+|||||++||++
T Consensus 81 di~~~R~e~~~~~~~~p~~~~~~~~~Dl~RRDFTINAmA~~~---~~~~liDp~~G~~DL~~ 139 (139)
T cd05398 81 DVATLRTETYTDPGRRPPVVGFTIEEDLLRRDFTINAMAYDL---DDGELIDPFGGLKDLEN 139 (139)
T ss_pred EEcccccccccCCCCCCcccCCCCHHHHhhcCcchhheEecC---CCCEEEeCCCCHHHHhC
Confidence 68899965432 2478899999999999999997 34899999999999985
No 58
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=99.52 E-value=7.3e-15 Score=168.96 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=63.0
Q ss_pred hhhcCcchhhhc-CCCCcEEEe-cCCCHHHHHHHhhhcCCCceeeeeEEEEEcCeeeccccceecccccccCCC-Cc-cc
Q psy11686 838 KILGGSFSKEMM-LKMLEINMF-PHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDG-RH-AE 913 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eitt~R~e~~~~~-r~-~~ 913 (939)
|+|||||||+|| ++++|+||+ +++.|+++.+. ....+.+.++ +++..+... |++++|+|.++.. .+ ..
T Consensus 4 ylVGG~VRD~Llg~~~~D~D~vv~~~~~~~~~~~-~~~~~g~~f~---v~~~~~~~~----e~~~~r~er~~~~g~~~~~ 75 (409)
T PRK10885 4 YLVGGAVRDALLGLPVKDRDWVVVGATPEEMLAQ-GYQQVGKDFP---VFLHPKTHE----EYALARTERKSGRGYTGFT 75 (409)
T ss_pred EEeccHHHHHHcCCCCCCeeEEeeCChHHHHHhC-CCeecCceeE---EEEeCCceE----EEEeeeeccccCCCCCCce
Confidence 899999999999 899999986 45788876553 1111112222 122233334 9999999976432 22 11
Q ss_pred c--ccCCCHHHHhhcCCchhhhcCccC
Q psy11686 914 V--QFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 914 v--~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
+ ....+|++||.||||||||||+|.
T Consensus 76 ~~~~~~~~l~eDl~RRDfTiNA~a~~~ 102 (409)
T PRK10885 76 CYAAPDVTLEEDLIRRDLTINAMAQDD 102 (409)
T ss_pred eccCCCCCHHHHHHhccchhhhheeCC
Confidence 1 222489999999999999999984
No 59
>COG2041 Sulfite oxidase and related enzymes [General function prediction only]
Probab=99.41 E-value=1.6e-13 Score=149.39 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=91.0
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--c
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--Q 477 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--~ 477 (939)
|+++||+++|+.+...+++|++|.+... +.|+||+|+++|+.+|++..|.+ ++.|. -
T Consensus 109 ~t~~dl~~~p~~~~~~~~~Cv~~Ws~~~------------------~~W~Gv~l~~lL~~~~p~~~A~~V~f~~~d~~~y 170 (271)
T COG2041 109 LTYEDLLALPLEERIYTFHCVEGWSMVD------------------APWTGVPLRELLDRAGPKDNAKYVMFHSLDGPDY 170 (271)
T ss_pred ecHHHHhhCCcccEEEEEEEecCceEee------------------cceeeeeHHHHHHHhCcCCCCeEEEEEccCcccc
Confidence 4555666678889999999999975321 18999999999999999999998 67776 5
Q ss_pred eeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceeec
Q psy11686 478 HVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYNT 531 (939)
Q Consensus 478 ~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~~ 531 (939)
...+++ +.||.+ +|||+|||++||+|+|+|||++|| ..+|.+.+++....|..
T Consensus 171 ~~~l~l-~~a~~p~~llA~~~~G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~ 235 (271)
T COG2041 171 TTGLPL-DDALHPLTLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWER 235 (271)
T ss_pred ccCCCH-HHhcCcHhhHHHHhcCccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhh
Confidence 567777 899998 799999999999999999998874 45888998888555554
No 60
>KOG2159|consensus
Probab=99.40 E-value=1.1e-13 Score=154.24 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceee--------ee---------EEEEEcCeeecccccee
Q psy11686 838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMP--------IP---------FTLLFSANFFRNLARIT 899 (939)
Q Consensus 838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~eit 899 (939)
+|+||||||.|| ++|+|+|||+++.+.++.+.|..+.+ ++.. .| .++...+..+ |++
T Consensus 32 RiaGGwVRD~LLg~~p~DiDiatta~~g~~~e~f~~~~~-~~~~~~~~~h~~~np~~skhletat~~i~~~~i----D~v 106 (416)
T KOG2159|consen 32 RLAGGWVRDLLLGREPKDIDIATTAMSGQMKEMFQSAQI-RVGKKFPICHVIMGPIKSKHLETATFRITTLRI----DFV 106 (416)
T ss_pred EEecccHHHHHcCCCCcccceeeccccHHHHHHHHHHHH-hhcccCCcceeecCCcceeeecceeeeeecccc----cee
Confidence 999999999999 89999999999999998888876553 2100 11 2333333333 777
Q ss_pred cccccccCCCCccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686 900 TLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGM 938 (939)
Q Consensus 900 t~R~e~~~~~r~~~v~~~~~l~~Dl~RRDFTINAma~~l 938 (939)
++|.+.|++.+-+.+.++ +..+|+.||||||||++|++
T Consensus 107 ~lr~~~y~e~~~~~~~dg-t~~~nalRRD~TIN~Lffn~ 144 (416)
T KOG2159|consen 107 NLRREAYTETSIPYVTDG-TRDENALRRDFTINSLFFNP 144 (416)
T ss_pred ecCcccccccCCCCCCcC-cchhhhhhhccchhhhhccC
Confidence 777777766665566665 67899999999999999986
No 61
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.35 E-value=5.9e-13 Score=157.05 Aligned_cols=81 Identities=22% Similarity=0.478 Sum_probs=70.6
Q ss_pred CCCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccc
Q psy11686 16 PISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIG 95 (939)
Q Consensus 16 ~~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG 95 (939)
..+..+.||++|+++|+++ ++|||+|+|+|||||+|++.||||+.|+.++|+|+|+.|. ..|+..+.++|++|+||
T Consensus 99 ~~~~~~~~t~~ev~~H~~~-~d~Wivi~gkVYDvT~fl~~HPGG~~i~~~aG~DaT~~F~---~~H~~~~~~~l~~~~IG 174 (526)
T PLN03198 99 KEKKSKSHLLSEVAAHNKP-NDCWIVIKNKVYDVSDFAAEHPGGSVISTYFGRDGTDAFS---SFHAASTWKILQDFYIG 174 (526)
T ss_pred hhhccCcCCHHHHHhhCCC-CCeEEEECCEEEecHHHHHhCCCchHHHHhcCCcHhHHHH---HhcCHHHHHHHhhCcce
Confidence 3445679999999999997 5999999999999999999999999888899998888874 34677788999999999
Q ss_pred ccCcc
Q psy11686 96 NISQE 100 (939)
Q Consensus 96 ~l~~~ 100 (939)
.+++.
T Consensus 175 ~l~~~ 179 (526)
T PLN03198 175 DVDNV 179 (526)
T ss_pred ecCCc
Confidence 99653
No 62
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.33 E-value=1.1e-12 Score=154.22 Aligned_cols=80 Identities=23% Similarity=0.513 Sum_probs=70.3
Q ss_pred CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccc
Q psy11686 17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGN 96 (939)
Q Consensus 17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~ 96 (939)
.++.+.||++||++|+++ ++|||+|+|+|||||+|+ .||||+.|+.++|+|+|+.|. ..|+..+.++|++|+||+
T Consensus 20 ~~~~~~~s~~ev~~h~~~-~~~wi~i~g~vYDvt~f~-~HPGG~~i~~~aG~DaT~~F~---~~H~~~~~~~l~~~~iG~ 94 (485)
T PLN03199 20 AEKPQKISWQEVKKHASP-DDAWIIHQNKVYDVSNWH-DHPGGAVIFTHAGDDMTDIFA---AFHAPGSQALMKKFYIGD 94 (485)
T ss_pred CccCCccCHHHHHhhCCC-CCeEEEECCEEEcCCCcC-cCCCchHHHhhCCCChhHHHH---HhcCHHHHHHHHhccccc
Confidence 355688999999999997 599999999999999997 899998888999999998884 357888999999999999
Q ss_pred cCccc
Q psy11686 97 ISQED 101 (939)
Q Consensus 97 l~~~~ 101 (939)
+++++
T Consensus 95 l~~~~ 99 (485)
T PLN03199 95 LIPES 99 (485)
T ss_pred ccccc
Confidence 96554
No 63
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.32 E-value=1.5e-12 Score=128.42 Aligned_cols=79 Identities=23% Similarity=0.489 Sum_probs=69.1
Q ss_pred CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI 97 (939)
Q Consensus 19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l 97 (939)
....++.+|+.+||+++ +|||+|+|+|||||.|++.|||| +.|+..+|+|++..| ...||+..+.++++.++||.+
T Consensus 48 ~~~~~~~eev~~h~~~~-d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f--~~~~~~~~~~~llk~~yv~~v 124 (164)
T COG5274 48 SPKPITAEEVAKHNKSE-DCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAF--NFLHHSHQIGNLLKDVYVDQV 124 (164)
T ss_pred ccccccHHHHHHhcCcc-ceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhh--cccccchhHHhhhhceeeecc
Confidence 34679999999999985 79999999999999999999999 788889999666666 356788888999999999998
Q ss_pred Ccc
Q psy11686 98 SQE 100 (939)
Q Consensus 98 ~~~ 100 (939)
...
T Consensus 125 ~r~ 127 (164)
T COG5274 125 HRP 127 (164)
T ss_pred cCc
Confidence 766
No 64
>KOG4232|consensus
Probab=98.85 E-value=1.3e-09 Score=121.51 Aligned_cols=81 Identities=26% Similarity=0.493 Sum_probs=69.7
Q ss_pred CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCC--hHHHHHHhhcCccc
Q psy11686 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL--QDEVFELLESYRIG 95 (939)
Q Consensus 19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~h--s~~a~~~l~~~~VG 95 (939)
.++++|++++.+|++. ++.|.+|+| |||+|+|++.|||| ..|..++|+|+|+.| ..|| +..|.+.|+...+|
T Consensus 6 ~~~~~~we~~~~~~~~-~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF---~AfH~~~~~~~~~l~~l~~~ 80 (430)
T KOG4232|consen 6 LPTTFSWEGKRKHDKA-EGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAF---EAFHPGTAFAYKHLKPLLIG 80 (430)
T ss_pred CceeeeccchhhccCC-CceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHH---HHhCCChHHHHHHHHHHHcC
Confidence 3468999999999998 599999999 99999999999999 899999999887777 3455 45588899999999
Q ss_pred ccCccchhh
Q psy11686 96 NISQEDSKL 104 (939)
Q Consensus 96 ~l~~~~~~~ 104 (939)
...++..++
T Consensus 81 ~~~pe~~~~ 89 (430)
T KOG4232|consen 81 ELSPEIPSL 89 (430)
T ss_pred CcCcccccc
Confidence 998777654
No 65
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.78 E-value=8e-09 Score=128.33 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=72.7
Q ss_pred hcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHH-HH
Q psy11686 663 KKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKE-MM 741 (939)
Q Consensus 663 ~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~-~~ 741 (939)
.++.|-+..+ .+|.+||+||||++||++++||. |+++|+++|+.++..|..++.||++.|+.|||.++.... .+
T Consensus 314 ~~~~l~~~~~--~~~~~DplRiLRa~rfaa~lgf~---I~~~T~~~i~~~~~~l~~~~~eri~~ef~kiL~~~~~~~~~l 388 (774)
T PRK03381 314 HAGEVVLARD--ARPARDPGLVLRVAAAAATTGLP---IAAATLSRLAASAPPLPTPWPAEARDDLLVLLGAGPAAVAVI 388 (774)
T ss_pred ECCEEEeCCc--cccccCHHHHHHHHHHHHhcCCC---cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCchHHHH
Confidence 3455555444 38999999999999999999997 999999999999999999999999999999999876654 45
Q ss_pred HHHHHhcCc--cccccc
Q psy11686 742 LKMLYQNLL--LFSKLK 756 (939)
Q Consensus 742 ~~l~~~~~l--lfp~l~ 756 (939)
..|.+.+.+ +||++.
T Consensus 389 ~~m~~~GvL~~~iPE~~ 405 (774)
T PRK03381 389 EALDRTGLWGRLLPEWE 405 (774)
T ss_pred HHHHHhCCHHHhchhHH
Confidence 555554444 689865
No 66
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=98.77 E-value=8.7e-09 Score=87.82 Aligned_cols=59 Identities=34% Similarity=0.347 Sum_probs=49.7
Q ss_pred CCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686 695 CNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 695 gf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~ 756 (939)
||+ |+++|..+|++++..|.++|+|||+.|+.|||.++++...+..|.+.+++ +||++.
T Consensus 1 gF~---ie~~t~~ai~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~ 61 (64)
T PF12627_consen 1 GFK---IEPETEEAIKENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELD 61 (64)
T ss_dssp T-E---E-HHHHHHHHHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHH
T ss_pred CCc---cCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCcccc
Confidence 675 99999999999999999999999999999999999888777777666666 799875
No 67
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.73 E-value=1.3e-08 Score=128.24 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=75.7
Q ss_pred HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCH--HHHHHHHHHHHcCCChHH
Q psy11686 662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISG--ERIWTELNKILGGSFSKE 739 (939)
Q Consensus 662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~--eRi~~El~kil~~~~~~~ 739 (939)
+.++.|++.++ .+|.|||+||||++||++++||. |+++|+.+|++++..|..++. ||++.|+.+||.++..+.
T Consensus 319 ~~~~~l~~~~~--~~f~eDPlriLR~~rfaa~~~~~---i~~~T~~~i~~~~~~l~~~~~~~er~~~ef~~iL~~~~~~~ 393 (850)
T TIGR01693 319 EDGGELVLART--AVFERDPALLLRLFAIAAQRGLP---IHPAALRQLTASLPLLPTPLREDPEARELFLELLTSGNGTV 393 (850)
T ss_pred EECCEEEecCc--cchhhCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHcCCCchH
Confidence 56788998876 49999999999999999999997 999999999999999999988 999999999999875444
Q ss_pred -HHHHHHHhcCc--cccccc
Q psy11686 740 -MMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 740 -~~~~l~~~~~l--lfp~l~ 756 (939)
.+..|.+.+.+ +||++.
T Consensus 394 ~~l~~m~~~gvL~~~iPe~~ 413 (850)
T TIGR01693 394 RALRAMNRAGVLGRFLPEWG 413 (850)
T ss_pred HHHHHHHHhCCHHHhCchHh
Confidence 45545444444 688764
No 68
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.67 E-value=2.1e-08 Score=126.30 Aligned_cols=104 Identities=9% Similarity=0.131 Sum_probs=86.1
Q ss_pred eEEeCcCcHHHHhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHH
Q psy11686 651 TVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTEL 728 (939)
Q Consensus 651 ~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El 728 (939)
..+||++|..||+++.|++++++ .|.+||+||||+|||+++ ++++..|+++|+.+|+.+...+..+ +.+|++.||
T Consensus 338 ~~~~~~~~~~~l~~~~i~~~~~~--~f~~dP~riLr~f~~~a~-~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f 414 (895)
T PRK00275 338 GTIQPLNSRFQLRDGYIEATHPN--VFKRTPFALLEIFVLMAQ-HPEIKGVRADTIRLLREHRHLIDDAFRNDIRNTSLF 414 (895)
T ss_pred ccccccCCCeEEECCEEEecChh--hhhcCHHHHHHHHHHHHh-CCCcCCCCHHHHHHHHHHHHhcCchhccCHHHHHHH
Confidence 37899999999999999999986 699999999999999999 4443347899999999999999887 667999999
Q ss_pred HHHHcCCChHHH-HHHHHHhcCc--ccccccc
Q psy11686 729 NKILGGSFSKEM-MLKMLYQNLL--LFSKLKA 757 (939)
Q Consensus 729 ~kil~~~~~~~~-~~~l~~~~~l--lfp~l~~ 757 (939)
.+||.++..... +..|.+.+++ ++|++..
T Consensus 415 ~~iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~ 446 (895)
T PRK00275 415 IELFKCPIGIHRNLRRMNRYGILGRYLPEFGH 446 (895)
T ss_pred HHHHcCCCchHHHHHHHHHcCCHHHhCchHhh
Confidence 999999875544 5555554444 6887553
No 69
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.65 E-value=2.6e-08 Score=120.98 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=71.9
Q ss_pred HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCCh-HHH
Q psy11686 662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFS-KEM 740 (939)
Q Consensus 662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~-~~~ 740 (939)
+.++.|++++++. | |||+||||++|||+++||. |+++|+++|+++ ..+.....||+..|+.|+|.++.. ...
T Consensus 275 ~~~~~I~~~~~~~--~-eDPlRiLRafrfAa~~gf~---I~~~Tl~~i~~~-~~L~~~~~er~~~ef~kiL~s~~~~~~~ 347 (693)
T PRK00227 275 DANGTIALSRTPD--L-DDPALPLRVAAAAARTGLP---VSESVWKRLEEC-PELPEPWPASAAGDFFRLLSSPVNSRRV 347 (693)
T ss_pred EECCEEEeCCCCc--c-cCHHHHHHHHHHHHhcCCC---cCHHHHHHHHhh-hhcchhhHHHHHHHHHHHHcCCCChHHH
Confidence 5678999999973 4 9999999999999999997 999999999988 667777889999999999999744 445
Q ss_pred HHHHHHhcCc--cccccc
Q psy11686 741 MLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 741 ~~~l~~~~~l--lfp~l~ 756 (939)
+..|.+.+.+ +||++.
T Consensus 348 L~~M~~~GvL~~llPE~~ 365 (693)
T PRK00227 348 IKQMDRHGLWERIVPEWD 365 (693)
T ss_pred HHHHHHcCCHHHHhHHHH
Confidence 5555554544 688764
No 70
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.65 E-value=4.5e-08 Score=122.84 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=77.8
Q ss_pred HHhcCcccccCCccccchhchhhHHHHHHHHHHh-C-CCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHcCCC
Q psy11686 661 DLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARI-C-NNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTELNKILGGSF 736 (939)
Q Consensus 661 DL~~~~iR~v~~~~~~f~EDPlRilRa~RFaarl-g-f~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El~kil~~~~ 736 (939)
.+++|.||+++++ .|.+||+||||+|||++++ + |. |++.|+.+|+.+...+..+ +.||++.||.+||..+.
T Consensus 328 ~~~~~~i~~~~~~--~f~~dP~riLr~fr~aa~~~~~~~---i~~~T~~~i~~~~~~i~~~~~~~er~~~ef~~iL~~~~ 402 (856)
T PRK03059 328 VEKQGMLEIASDD--LFERHPHAILEAFLLYQQTPGLKG---LSARTLRALYNARDVMNAAFRRDPVNRALFMQILQQPR 402 (856)
T ss_pred EEECCEEEecCch--hhhcCHHHHHHHHHHHHhcCCccC---cCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCC
Confidence 4788999999886 6999999999999999999 6 55 9999999999999999888 67999999999999988
Q ss_pred hH-HHHHHHHHhcCc--ccccccc
Q psy11686 737 SK-EMMLKMLYQNLL--LFSKLKA 757 (939)
Q Consensus 737 ~~-~~~~~l~~~~~l--lfp~l~~ 757 (939)
.. ..+..|.+.+.+ +||++..
T Consensus 403 ~~~~~l~~m~~~GlL~~~lPe~~~ 426 (856)
T PRK03059 403 GITHALRLMNQTSVLGRYLPNFRR 426 (856)
T ss_pred chHHHHHHHHHhCCHHHhCchHhh
Confidence 64 455555555555 6887664
No 71
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.35 E-value=4e-07 Score=115.79 Aligned_cols=87 Identities=11% Similarity=0.263 Sum_probs=70.0
Q ss_pred HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcC-----CCHHHHHHHHHHHHcCC-
Q psy11686 662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHN-----ISGERIWTELNKILGGS- 735 (939)
Q Consensus 662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~-----vs~eRi~~El~kil~~~- 735 (939)
+.++.|+++++. +|.|||+||||++||++++||. |+++|+.+|+++...+.. .+.+|++.|+ |..+
T Consensus 384 ~~~~~i~~~~~~--~f~edPlriLR~fr~aa~~~~~---i~~~T~~~i~~~~~~i~~~~~~~~~~~r~f~ei---l~~~~ 455 (931)
T PRK05092 384 VDNGRINLADPD--VFERDPVNLIRLFHLADRHGLD---IHPDAMRLVTRSLRLIDAALREDPEANRLFLDI---LTSRR 455 (931)
T ss_pred EECCEEEecChh--hhhhCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcChhhccCHHHHHHHHHH---HcCCC
Confidence 577899999875 8999999999999999999997 999999999999987766 5778999886 4444
Q ss_pred ChHHHHHHHHHhcCc--cccccc
Q psy11686 736 FSKEMMLKMLYQNLL--LFSKLK 756 (939)
Q Consensus 736 ~~~~~~~~l~~~~~l--lfp~l~ 756 (939)
.+...+..|.+.+.+ ++|++.
T Consensus 456 ~~~~~l~~m~~~GvL~~~iPef~ 478 (931)
T PRK05092 456 NPERVLRRMNEAGVLGRFIPDFG 478 (931)
T ss_pred chHHHHHHHHHhCChHHhcccHH
Confidence 445556656555555 688764
No 72
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.19 E-value=2.5e-06 Score=71.85 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=61.5
Q ss_pred CCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcC-cccccC
Q psy11686 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESY-RIGNIS 98 (939)
Q Consensus 20 ~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~-~VG~l~ 98 (939)
++.||++|+.++|...+..+|.++|.||||+.-...--|-..-++-+|+|.++-|+..+.| -.++|+.| +||.|.
T Consensus 1 mrefTLEELs~ynG~nGpaYiA~~G~VYDvS~s~~W~dGtHqglhsaG~DLs~~~~~~aph----g~eil~~~PvVG~L~ 76 (81)
T COG4892 1 MREFTLEELSKYNGENGPAYIAVNGTVYDVSLSPSWGDGTHQGLHSAGKDLSSEFNSCAPH----GMEILTSLPVVGALI 76 (81)
T ss_pred CceecHHHHHhhcCCCCCeEEEECCEEEeeccCcccCCCccccccccchhHHHHHhhcCCc----hhHHHhcCchhheee
Confidence 4789999999999877899999999999999866554444777888999999888754444 35677888 888886
Q ss_pred cc
Q psy11686 99 QE 100 (939)
Q Consensus 99 ~~ 100 (939)
.+
T Consensus 77 k~ 78 (81)
T COG4892 77 KE 78 (81)
T ss_pred cc
Confidence 54
No 73
>PHA01806 hypothetical protein
Probab=98.08 E-value=1.1e-06 Score=89.07 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.5
Q ss_pred ccccccccee-ecCCCCCCcccc-CCCCC
Q psy11686 543 PRATLQGARL-LTRPPNPHSVRF-KSGPD 569 (939)
Q Consensus 543 ~i~~m~V~Sl-I~~P~~D~dI~t-~a~~~ 569 (939)
-++...||++ ++++++|+||++ ++.|+
T Consensus 39 YlVGG~VRD~Llgr~~kDiDivt~~~~pe 67 (200)
T PHA01806 39 ALAGGAARDLMHGAEPKDIDIALYGMDDR 67 (200)
T ss_pred EEECchHHHHHcCCCCCceEEEccCCCHH
Confidence 4667789997 699999999998 57777
No 74
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.01 E-value=6e-06 Score=104.02 Aligned_cols=89 Identities=11% Similarity=0.190 Sum_probs=69.8
Q ss_pred HhcCcccccCCccccchhchhhHHHHHHHHHHh-CCCCCCChHHHHHHHHHh----hhhhcCCCHHHHHHHHHHHHcCCC
Q psy11686 662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARI-CNNPNNHKEEVLSAIKNN----LDGLHNISGERIWTELNKILGGSF 736 (939)
Q Consensus 662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarl-gf~~~~i~~~t~~ai~~~----~~~l~~vs~eRi~~El~kil~~~~ 736 (939)
+.++.|.+..+ ..|.+||+||||+|||++++ ||. |+++|+.+|+.+ ...+..+|.|| .|+.|||.++.
T Consensus 326 ~~~~~i~~~~~--~~f~~dp~riLr~fr~~a~~~~~~---i~~~t~~~i~~~~~~~~~~l~~~~~eR--~ef~kiL~~~~ 398 (854)
T PRK01759 326 LINNAICLRNP--DCFEQQPESILDLFFYLTQYPQAE---IHSTTLRQLRLALEQLQQPLCELPAAR--ERFLRLFNQPN 398 (854)
T ss_pred EECCEEEecCh--hhhhhCHHHHHHHHHHHHHCCCCC---cCHHHHHHHHHHHHhccchhccCHHHH--HHHHHHHcCCC
Confidence 56677777655 48999999999999999999 697 999999977765 34677899998 89999999987
Q ss_pred hH-HHHHHHHHhcCc--ccccccc
Q psy11686 737 SK-EMMLKMLYQNLL--LFSKLKA 757 (939)
Q Consensus 737 ~~-~~~~~l~~~~~l--lfp~l~~ 757 (939)
.. ..+..|.+.+.+ ++|++..
T Consensus 399 ~~~~~l~~M~~~GvL~~~iPe~~~ 422 (854)
T PRK01759 399 AIKRALVPMHQYGVLTAYLPQWKG 422 (854)
T ss_pred chHHHHHHHHHhCCHHHhChHHHh
Confidence 65 445555555544 6887653
No 75
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.95 E-value=1.1e-05 Score=102.09 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=72.8
Q ss_pred HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHcCCChHH
Q psy11686 662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTELNKILGGSFSKE 739 (939)
Q Consensus 662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El~kil~~~~~~~ 739 (939)
+.+++|++++++ .|.+||+||||+|||+++. +.+..|+++|+.+|+.+...+..- ..++++.||.|||.++.+..
T Consensus 350 ~~~~~i~~~~~~--~f~~dp~~iLr~f~~aa~~-~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~iL~~~~~~~ 426 (884)
T PRK05007 350 LRGTLIDLRDET--LFQRQPEAILRMFYLMARN-SNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAVS 426 (884)
T ss_pred EECCEEeecChh--hhhhCHHHHHHHHHHHHhC-CCcCCCCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCchH
Confidence 577889999987 6999999999999999994 443347799999999998877631 23569999999999987765
Q ss_pred -HHHHHHHhcCc--ccccccc
Q psy11686 740 -MMLKMLYQNLL--LFSKLKA 757 (939)
Q Consensus 740 -~~~~l~~~~~l--lfp~l~~ 757 (939)
.+..|.+.+.+ ++|++..
T Consensus 427 ~~l~~m~~~GlL~~~iPe~~~ 447 (884)
T PRK05007 427 RALLPMHRHSVLSAYMPQWSH 447 (884)
T ss_pred HHHHHHHHhCCHHHhCchHhh
Confidence 56666555555 6887653
No 76
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.90 E-value=0.0026 Score=80.55 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred ccchhchhhHHHHHHHHHHhC--CCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHcCCChHHHHHHHHHhcCc
Q psy11686 675 SRIQEDYLRILRYFRFFARIC--NNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTELNKILGGSFSKEMMLKMLYQNLL 750 (939)
Q Consensus 675 ~~f~EDPlRilRa~RFaarlg--f~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El~kil~~~~~~~~~~~l~~~~~l 750 (939)
..|.+||.+|||.|.++++.+ .. |++.|+.+|+.+...+..- ...|++.||.|||.++++...+..|.+.+++
T Consensus 350 ~~f~~~P~~il~lf~~~~~~~~~~~---i~~~t~r~l~~~~~~l~~~~~~~~ri~~ef~kiL~~~~~~~~l~~m~~~GvL 426 (869)
T PRK04374 350 SWPDGDVLQVFALFAQWAAHREVRG---LHSLTARALAEVLRDLPAYDVADATARERFMALLRGPRAVETLNRMARLGVL 426 (869)
T ss_pred ccchhCHHHHHHHHHHHHhCCCcCC---CCHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHcCCChhHHHHHHHHhCCH
Confidence 479999999999999999998 54 8999999999988766542 5679999999999998777666666666655
Q ss_pred --ccccccc
Q psy11686 751 --LFSKLKA 757 (939)
Q Consensus 751 --lfp~l~~ 757 (939)
++|++..
T Consensus 427 ~~~lPE~~~ 435 (869)
T PRK04374 427 GQWIPAFAS 435 (869)
T ss_pred HHHhhhHHH
Confidence 6887653
No 77
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.014 Score=56.16 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=54.4
Q ss_pred ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEE
Q psy11686 403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVE 482 (939)
Q Consensus 403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~ 482 (939)
|++.+|.++|..+++..+ +|.+ ||++|+||+|+++|+..|.+... ++
T Consensus 38 ft~qeLeal~~~T~ete~-------------------Pw~~---gn~rf~Gvsls~Ll~~l~ak~ts-----------lt 84 (155)
T COG3915 38 FTLQELEALPDETIETET-------------------PWTQ---GNTRFKGVSLSALLAWLGAKQTS-----------LT 84 (155)
T ss_pred ecHHHHhcCCcceEEEec-------------------Cccc---CceeecceeHHHHHHHhhccCcc-----------eE
Confidence 777778887777665544 4554 57899999999999999965433 43
Q ss_pred eeeeeccc-------------------CCCCCCCCCCCCCCcceeec
Q psy11686 483 IWSKAVDS-------------------SYNTQPESFANIWNLRGVLS 510 (939)
Q Consensus 483 ~~~~a~d~-------------------~~Ng~pl~~~~g~p~R~vvp 510 (939)
. .|+++ .+||.+..-.|-.|+=.+-|
T Consensus 85 ~--iALNdY~a~Ip~sDi~kynpIlA~~~nGn~M~IRerGPl~~IYp 129 (155)
T COG3915 85 V--IALNDYWAEIPYSDIEKYNPILAIQNNGNYMQIRERGPLWSIYP 129 (155)
T ss_pred E--EEecceeccCcHHHhhhcccEEEEEeCCcEEEEeccCceEEEee
Confidence 3 45554 68898888888888888777
No 78
>KOG1110|consensus
Probab=95.49 E-value=0.023 Score=57.62 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCCCCCcCHHHHhhccCC--CCCeEEEEcCeEeecccchh-cCCCchHHHHhhcCCchh
Q psy11686 17 ISTLPWYSLSDIQNHKDL--KSSIWVVFRQGVYDITEFVQ-MHPGGEIIMKAAGGSIEP 72 (939)
Q Consensus 17 ~~~~~~~t~~ev~~h~~~--~~~~wvii~g~VYDvT~f~~-~HPGG~~il~~aG~d~~~ 72 (939)
.+.++.||.+|+++++.. +...++.|+|+|||||.=.. +-|||-. -.+||+|++.
T Consensus 52 ~P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY-~~fAG~DASR 109 (183)
T KOG1110|consen 52 LPKVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY-SLFAGKDASR 109 (183)
T ss_pred CCcccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc-hhhcccchHH
Confidence 344568999999999843 35899999999999997554 6788722 2356765543
No 79
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=0.045 Score=52.77 Aligned_cols=73 Identities=8% Similarity=-0.128 Sum_probs=58.5
Q ss_pred ceeeeHHHHHHhccc-----ee-ccccCccCccccHHHHHhCCCCCC-----------CCCcchhhhcC--C---CCCCC
Q psy11686 170 LSSFKHSDEKLKLVK-----VM-AGNISQEDSKLAAKDIASDPYVME-----------PVRSPLLKATS--L---KPYNA 227 (939)
Q Consensus 170 p~~~t~~dl~~~~p~-----~C-~gn~~~~~~~~~~~~vL~~~g~~d-----------~~~ipl~~a~~--~---~~mNG 227 (939)
+.+||++||. .+|. +- +.-++..|.|++++++|+..|++. ...||+++.-. + |.|||
T Consensus 35 ~~~ft~qeLe-al~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iALNdY~a~Ip~sDi~kynpIlA~~~nG 113 (155)
T COG3915 35 TVSFTLQELE-ALPDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIALNDYWAEIPYSDIEKYNPILAIQNNG 113 (155)
T ss_pred ceeecHHHHh-cCCcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEecceeccCcHHHhhhcccEEEEEeCC
Confidence 5679999998 7888 33 336778899999999999999652 23499998643 3 99999
Q ss_pred CCCCCC-CCCceEeeCC
Q psy11686 228 EPPPSM-LYSSLLRIPF 243 (939)
Q Consensus 228 epLp~~-G~PlRlvvPg 243 (939)
.+...- -+|+-+|-|-
T Consensus 114 n~M~IRerGPl~~IYpl 130 (155)
T COG3915 114 NYMQIRERGPLWSIYPL 130 (155)
T ss_pred cEEEEeccCceEEEeec
Confidence 999999 9999877775
No 80
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=94.06 E-value=0.036 Score=31.57 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=8.7
Q ss_pred EEeCCCCCeEE
Q psy11686 330 VTIDQGRTWHV 340 (939)
Q Consensus 330 vS~DgG~tW~~ 340 (939)
.|.|+|+||+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 69999999974
No 81
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=84.74 E-value=0.63 Score=42.71 Aligned_cols=25 Identities=36% Similarity=0.702 Sum_probs=18.7
Q ss_pred hccCCCCCeEE-------------EEcCeEeecccchh
Q psy11686 30 NHKDLKSSIWV-------------VFRQGVYDITEFVQ 54 (939)
Q Consensus 30 ~h~~~~~~~wv-------------ii~g~VYDvT~f~~ 54 (939)
.|..+++|.|+ +.+|+|||||+|+.
T Consensus 36 ~H~Ak~gDiWaE~~~~G~~~~yy~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 36 RHPAKEGDIWAESSSLGFLWTYYACMDGKVYDITEWAT 73 (94)
T ss_pred hcccccCCeEEEecccceEEEEEEEcCceEEehhhhhh
Confidence 34444567776 67999999999984
No 82
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=69.26 E-value=31 Score=31.54 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=47.4
Q ss_pred EEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecC
Q psy11686 293 SAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368 (939)
Q Consensus 293 S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~ 368 (939)
-.|..|.+|+.|. .+++|+|.|-.-. +-..++|.-+.|+.=.+...... ....+|-.|+.++..+
T Consensus 3 I~V~~P~pg~~V~---sp~~V~G~A~~FE--gtv~~rv~D~~g~vl~e~~~~a~------~g~~~~g~F~~tv~~~ 67 (88)
T PF10648_consen 3 IWVTAPAPGDTVS---SPVKVSGKARVFE--GTVNIRVRDGHGEVLAEGFVTAT------GGAPSWGPFEGTVSFP 67 (88)
T ss_pred eEEcCCCCcCCcC---CCEEEEEEEEEee--eEEEEEEEcCCCcEEEEeeEEec------cCCCcccceEEEEEeC
Confidence 3578999999996 6899999998764 46788887778765422222221 2456899999999875
No 83
>KOG1108|consensus
Probab=65.72 E-value=5 Score=42.48 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=40.9
Q ss_pred CCcCHHHHhhccCCC--CCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhh
Q psy11686 21 PWYSLSDIQNHKDLK--SSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFW 74 (939)
Q Consensus 21 ~~~t~~ev~~h~~~~--~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~ 74 (939)
..||++|+++.|..+ ..+++.|=|.||||+.=...--.|..--+++|+|++..|
T Consensus 60 ~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAF 115 (281)
T KOG1108|consen 60 ILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAF 115 (281)
T ss_pred eeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchhe
Confidence 489999999998432 378999999999999866433334555678999777665
No 84
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=59.68 E-value=9.2 Score=32.17 Aligned_cols=35 Identities=46% Similarity=0.492 Sum_probs=28.9
Q ss_pred hhhHHHHhhhhccccccccchhhHHHHhhhhcCcc
Q psy11686 810 KEEVLSAIKKNLDGLHNISGERIWTELNKILGGSF 844 (939)
Q Consensus 810 r~~ll~ai~~i~~~L~~l~~eri~~~L~~iVGG~V 844 (939)
.+++..+|++..+.|.+++++||+.|+.++..+.-
T Consensus 5 e~~t~~ai~~~~~~L~~is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 5 EPETEEAIKENAELLSKISKERIREELEKILSSPN 39 (64)
T ss_dssp -HHHHHHHHHHGGGGGGS-HHHHHHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 45788899999889999999999999998876654
No 85
>KOG0720|consensus
Probab=53.95 E-value=7.3 Score=45.35 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=13.5
Q ss_pred EEEEcCeEeecccchh
Q psy11686 39 WVVFRQGVYDITEFVQ 54 (939)
Q Consensus 39 wvii~g~VYDvT~f~~ 54 (939)
+++-+|+|||+|+|+.
T Consensus 380 y~c~DgkVYDITeWA~ 395 (490)
T KOG0720|consen 380 YACMDGKVYDITEWAI 395 (490)
T ss_pred eeecCCceEeehhhhh
Confidence 3478999999999973
No 86
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=46.26 E-value=22 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=25.2
Q ss_pred CcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeee
Q psy11686 308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANF 343 (939)
Q Consensus 308 ~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l 343 (939)
+..++|+++-.+++..+|.+++ +++|.+|..+++
T Consensus 10 ~d~iti~~~f~~~~~~~Ie~i~--FaDGt~w~~~~I 43 (43)
T PF06594_consen 10 GDSITIKNWFSSDGSYRIEQIE--FADGTVWTRAQI 43 (43)
T ss_pred CcEEEEeeeECccCCCcEeEEE--EcCCCEecHHHC
Confidence 4689999987665466798765 578999987653
No 87
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.16 E-value=63 Score=40.75 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=58.3
Q ss_pred cCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCC-hHHHHHHHHHhhhhhcCCCH--HHHHHHHHHHHcCCChHHH
Q psy11686 664 KGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNH-KEEVLSAIKNNLDGLHNISG--ERIWTELNKILGGSFSKEM 740 (939)
Q Consensus 664 ~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i-~~~t~~ai~~~~~~l~~vs~--eRi~~El~kil~~~~~~~~ 740 (939)
++.|-.-+++ -|..||..|||-|-++++.|.. . .++|+.++......|..-=. +.=..-+..||..+.....
T Consensus 338 ~g~I~l~~~~--~f~~dP~~ilrlf~~~~~~~~~---~~~~~Tlr~L~~a~~~l~~~l~~~peA~~~Fl~il~~~~~~~r 412 (867)
T COG2844 338 NGRIELRDPD--LFERDPEAILRLFAIMAQTGLI---TGHPDTLRQLRRALRLLNQPLREDPEARRLFLSILRSPNAIRR 412 (867)
T ss_pred CCEEEecCch--hhhhChHHHHHHHHHHHhcCCc---ccchHHHHHHHHhccccCcccccCHHHHHHHHHHHhCCCcHHH
Confidence 3444444554 6999999999999999999996 4 69999999887765543211 3344567788888877766
Q ss_pred HHHHHHhcCc
Q psy11686 741 MLKMLYQNLL 750 (939)
Q Consensus 741 ~~~l~~~~~l 750 (939)
.++.|+..|+
T Consensus 413 ~l~~Mn~~GV 422 (867)
T COG2844 413 TLRPMNRYGV 422 (867)
T ss_pred HHHHHHHhhh
Confidence 6666665554
No 88
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=41.07 E-value=71 Score=36.12 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=36.0
Q ss_pred eEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCC
Q psy11686 292 ISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTG 345 (939)
Q Consensus 292 ~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~ 345 (939)
+..+..|..|..+. +|++.+-.+.....+.....+-+|-|+|+||+......
T Consensus 142 ~~~~~~~g~gi~l~--~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~ 193 (351)
T cd00260 142 AALFTGPGSGIQMK--DGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVN 193 (351)
T ss_pred eEEEecCcCeEEec--CCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCC
Confidence 34445555554443 67887777776654556788999999999998765543
No 89
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=39.92 E-value=42 Score=34.02 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=29.1
Q ss_pred hhhcCcchhhhc---CCCCcEEEecC-CCHHHHHHHhhhcC
Q psy11686 838 KILGGSFSKEMM---LKMLEINMFPH-LGTDETFATLDFEG 874 (939)
Q Consensus 838 ~iVGG~VRD~LL---~~~~D~Di~~~-~~~~~~~~~~~~~~ 874 (939)
+.|||++.=++- -.|+||||-|+ .+.+++..+|...+
T Consensus 20 W~lgGS~~L~l~Gl~~~p~DIDI~~D~~d~e~i~~il~~~~ 60 (156)
T cd07749 20 WALTGSLSFALQGVPVEPHDIDIQTDNEGAYEIERIFHEFV 60 (156)
T ss_pred EEehhhHHHHHcCCCCCCCcceEEEchhhHHHHHHHHHHhc
Confidence 889999854443 37899999988 57888888887665
No 90
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=36.26 E-value=49 Score=29.64 Aligned_cols=37 Identities=27% Similarity=0.676 Sum_probs=24.6
Q ss_pred cCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEee
Q psy11686 298 PVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVAN 342 (939)
Q Consensus 298 P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~ 342 (939)
|.+|..+. ++.+.+. .++-| ..++.|+|||++|+...
T Consensus 13 P~pga~i~--~g~l~~n-~~~pg-----~~i~Yt~dgg~~w~~Y~ 49 (78)
T cd02847 13 PVPGAKVE--NGKLEMN-VSLPG-----LTLQYSTDGGKNWNIYD 49 (78)
T ss_pred CCCCeEEE--cCEEEEe-ccCCC-----cEEEEEecCCccCeecc
Confidence 45555555 4555544 36554 34899999999999854
No 91
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=26.07 E-value=2.3e+02 Score=34.94 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.9
Q ss_pred hHH-HHHHHHHHhCCC
Q psy11686 683 RIL-RYFRFFARICNN 697 (939)
Q Consensus 683 Ril-Ra~RFaarlgf~ 697 (939)
||| ||+|++.+||++
T Consensus 309 rilRRa~r~~~~lg~~ 324 (594)
T PRK01584 309 RLIRRSIRHAKKLGIE 324 (594)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 566 899999999986
No 92
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=25.44 E-value=1.1e+02 Score=29.13 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=44.6
Q ss_pred cceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecCC
Q psy11686 290 PVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDP 369 (939)
Q Consensus 290 ~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~ 369 (939)
-+.|+-.. .++..|. |++.|+..||. .-..|..|+|+-+||++..=............-.+-.|++.+++++
T Consensus 8 ~Le~~~~~-~~~~~L~---G~V~V~Nlaye----K~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~ 79 (113)
T PF03370_consen 8 CLESVSLS-PDQQSLS---GTVRVRNLAYE----KEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPD 79 (113)
T ss_dssp EEEEEEEC---SSEEE---EEEEEE-SSSS----EEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SS
T ss_pred EEEEEEEc-CCCCEEE---EEEEEEcCCCC----eEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCc
Confidence 34555544 3455564 89999998864 4677999999999999875432220000112346779999998876
Q ss_pred C
Q psy11686 370 K 370 (939)
Q Consensus 370 ~ 370 (939)
.
T Consensus 80 ~ 80 (113)
T PF03370_consen 80 L 80 (113)
T ss_dssp E
T ss_pred c
Confidence 4
No 93
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.73 E-value=1.1e+02 Score=38.09 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=31.3
Q ss_pred eEEEE-EEeCCCCCeEEeeeCCCCCCCCCC-CceeEEEeEEEeecCCCC
Q psy11686 325 IVRVD-VTIDQGRTWHVANFTGQDSQAPLT-RHWGWTLWRATIPVDPKT 371 (939)
Q Consensus 325 I~rVe-vS~DgG~tW~~A~l~~~~~~~~~~-~~~~W~~W~~~~~~~~~~ 371 (939)
-..|| ||+|||.||+.-.......+.+.. ..-.|+..+++++.=+|.
T Consensus 384 y~~VevvStdGg~Twt~~~g~~~~~~~~~~~~sg~Wv~~~~DLSayAGq 432 (645)
T PF05547_consen 384 YAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSSGGWVDASFDLSAYAGQ 432 (645)
T ss_pred eEEEEEEEcCCCceeEecCccccccCCCCCCCccceeEeEeccccccCC
Confidence 46788 999999999976544332221121 123599999999876554
No 94
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.08 E-value=41 Score=33.58 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=28.9
Q ss_pred EEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCC---CCC----C-CCCCCceeEEEeEEE
Q psy11686 310 QMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTG---QDS----Q-APLTRHWGWTLWRAT 364 (939)
Q Consensus 310 ~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~---~~~----~-~~~~~~~~W~~W~~~ 364 (939)
.+...|.+.+- =...+||+|||+||+.-.... +++ . ....+.|.=.+|++.
T Consensus 101 ~yv~a~~dva~----ka~~~~sIDgG~sf~~nPt~kvt~~e~Gk~~~~~apAs~YtniRw~lp 159 (176)
T COG4719 101 SYVDAGRDVAL----KAAFEVSIDGGESFQGNPTYKVTTLEDGKKSRVEAPASDYTNIRWRLP 159 (176)
T ss_pred EEEechhhhhh----hhcEEEEecCCcccccCCcEEEEecCCCeEEEeecCccccceeEEecc
Confidence 34555555441 357899999999998652211 100 0 011246777788773
No 95
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=21.69 E-value=1.5e+02 Score=31.87 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=27.2
Q ss_pred CcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCC
Q psy11686 308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTG 345 (939)
Q Consensus 308 ~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~ 345 (939)
+|.+.+..|.-.+ +..-..+-+|-|+|+||+......
T Consensus 118 ~G~l~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~~~~~ 154 (275)
T PF13088_consen 118 DGRLIAPYYHESG-GSFSAFVYYSDDGGKTWSSGSPIP 154 (275)
T ss_dssp TTEEEEEEEEESS-CEEEEEEEEESSTTSSEEEEEECE
T ss_pred CCCEEEEEeeccc-cCcceEEEEeCCCCceeecccccc
Confidence 4666666554433 446788999999999999988765
No 96
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.53 E-value=86 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCeEEeeeCCCC
Q psy11686 327 RVDVTIDQGRTWHVANFTGQD 347 (939)
Q Consensus 327 rVevS~DgG~tW~~A~l~~~~ 347 (939)
.+-+|.|+|+||+..+...+.
T Consensus 254 ~l~~S~DgGktW~~~~~~~~~ 274 (302)
T PF14870_consen 254 TLLVSTDGGKTWQKDRVGENV 274 (302)
T ss_dssp -EEEESSTTSS-EE-GGGTTS
T ss_pred cEEEeCCCCccceECccccCC
Confidence 478999999999999875543
Done!