RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11686
(939 letters)
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 157 bits (399), Expect = 2e-41
Identities = 101/380 (26%), Positives = 145/380 (38%), Gaps = 68/380 (17%)
Query: 537 HPSG--YQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELK------ 588
H SG + + A + S + D KMKL SPEF S FT LK
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKMKLQSPEFQSLFTEGLKSLTELF 66
Query: 589 -------RLAG----------------------------IFEKHGYQLRIA-GE--GTVT 610
R+AG +F+ G ++ GE GT+T
Sbjct: 67 VKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTIT 126
Query: 611 AK-------VLSYRNRREKEDRIGENQPFRKLTLSVQDKDR--------SFRLDGTVYDY 655
A+ + + R + R E + +D +R DGT++DY
Sbjct: 127 ARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQ---KDAERRDLTINSMFLGFDGTLFDY 183
Query: 656 FNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDG 715
FNG+EDLK FVG RIQEDYLRILRYFRF+ RI + P +H E L AI N G
Sbjct: 184 FNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKG 243
Query: 716 LHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSE 775
L ISGERIW EL KIL G+ ++ + ++ + L A + E K + +
Sbjct: 244 LAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPAN---ASLEEFDKVSKNVD 300
Query: 776 LIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTE 835
L + + + + R K L +K D +
Sbjct: 301 GFSPKPVTLLASLFKVQDDVTKLDLR-LKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKP 359
Query: 836 LNKILGGSFSKEMMLKMLEI 855
+ S + ++ E+
Sbjct: 360 YQDFIIDSREPDATTRVCEL 379
Score = 83.0 bits (205), Expect = 8e-17
Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
D+L G KP DIDFAT ATP QMK MF +R N +GEKHGT+ AR++ +ENFE+
Sbjct: 82 DLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLH-EENFEI 136
Score = 82.2 bits (203), Expect = 2e-16
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 898 ITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK 939
ITTLRIDVTTDGRHAEV+FT DW+ DA RRDLT+NSMFLG
Sbjct: 136 ITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD 177
Score = 81.4 bits (201), Expect = 3e-16
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 794 IIR--QFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLK 851
I+R +F+ RI + P +H E L AI +N GL ISGERIW EL KIL G+ ++
Sbjct: 212 ILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHL 271
Query: 852 MLEINMFPHLGTDETFATLDFEGLFRSM----PIPFTLL 886
+ ++++ P++G + +F+ + +++ P P TLL
Sbjct: 272 IYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLL 310
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 49/182 (26%)
Query: 660 EDLKKGVCAFVGDPVSR------IQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNL 713
+ + K V F PV+ +Q+D ++ + K L +KN
Sbjct: 293 DKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKI-------AKEEKNLGLFIVKNRK 345
Query: 714 DGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEK 773
D + YQ+ ++ S+ T R + EL+KY+ +
Sbjct: 346 DLIKATDSSDPL------------------KPYQDFIIDSREPDATTR--VCELLKYQGE 385
Query: 774 SELIKDFHKWRLPTFPMNGN---------------IIRQFFARICNNP-NNHKEEVLSAI 817
L+K+ +W +P FP++G+ +++Q + + K+E+LS I
Sbjct: 386 HCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYI 445
Query: 818 KK 819
KK
Sbjct: 446 KK 447
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET:
MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB:
2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Length = 372
Score = 138 bits (350), Expect = 1e-35
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 5/129 (3%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGE 270
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
V+GYAWSGGG+ +VRVDV++D GRTW VA G + P R W W LW T+PV+
Sbjct: 271 L--TVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKA--PPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIM 377
E+ I+
Sbjct: 327 AG-TELEIV 334
Score = 72.4 bits (178), Expect = 2e-13
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW--GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDSADVQH---VHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 273 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 332
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 333 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370
Score = 63.9 bits (156), Expect = 7e-11
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA---RMNDKENFEVKPVKGLTWGHAAVGNATW 451
+ ++++ F + +V + CA R E V+PVKGL W A+ A W
Sbjct: 72 SLAELRSRFPKHEVTATLQ--------CAGNRR---SEMSRVRPVKGLPWDIGAISTARW 120
Query: 452 TGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
GARL DVL AG + HV E
Sbjct: 121 GGARLRDVLLHAGFPEELQ----GEWHVCFE 147
Score = 58.9 bits (143), Expect = 3e-09
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
DP+ +P R P L+ S KP+NAEPP +L E FLTP+
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPN 38
Score = 49.3 bits (118), Expect = 3e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
DP+ +P R P L+ S KP+NAEPP +L L
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFL 35
Score = 35.8 bits (83), Expect = 0.055
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 517 RVEIWSKAVDSSYNTQPENGHP 538
+EI KAVDSSYN QP++ P
Sbjct: 330 ELEIVCKAVDSSYNVQPDSVAP 351
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 137 bits (347), Expect = 1e-34
Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 5/129 (3%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQELPV SA+ P A +
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGE 364
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
V+GYAWSGGG+ +VRVDV++D GRTW VA G + P R W W LW T+PV+
Sbjct: 365 L--TVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKA--PPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIM 377
E+ I+
Sbjct: 421 AG-TELEIV 428
Score = 124 bits (312), Expect = 4e-30
Identities = 56/133 (42%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAM 76
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+
Sbjct: 2 PSYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWAL 61
Query: 77 YGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEP 136
Y VH + V ELL+ Y++G +S +++ A A DP+ +P R P L+ S KP+NAEP
Sbjct: 62 YAVHGEPHVLELLQQYKVGELSPDEAP--AAPDAQDPFAGDPPRHPGLRVNSQKPFNAEP 119
Query: 137 PPSMLVENFLTPS 149
P +L E FLTP+
Sbjct: 120 PAELLAERFLTPN 132
Score = 72.6 bits (178), Expect = 2e-13
Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW--GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDSADVQH---VHVE 482
VKG W G V G TW ARL+ G + +L V +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
I KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464
Score = 61.0 bits (148), Expect = 1e-09
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGA 454
+ ++++ F + +V + CA E V+PVKGL W A+ A W GA
Sbjct: 166 SLAELRSRFPKHEVTATLQ--------CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGA 217
Query: 455 RLVDVLKAAGISPDQSLDSADVQHVHVE 482
RL DVL AG + HV E
Sbjct: 218 RLRDVLLHAGFPE----ELQGEWHVCFE 241
Score = 41.0 bits (96), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 204 SDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
DP+ +P R P L+ S KP+NAEPP +L L
Sbjct: 94 QDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFL 129
Score = 35.6 bits (82), Expect = 0.072
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 517 RVEIWSKAVDSSYNTQPENGHP 538
+EI KAVDSSYN QP++ P
Sbjct: 424 ELEIVCKAVDSSYNVQPDSVAP 445
>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor,
molybdopterin, peroxisomes, intramolecular electron
transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis
thaliana} SCOP: b.1.18.6 d.176.1.1
Length = 393
Score = 130 bits (329), Expect = 8e-33
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
+ + ES + Q DYK F PS +WD ++++ + PV SAIC +K
Sbjct: 224 SINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGK 283
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRH-----WGWTLWRA 363
++GYA SGGG+ I RVD+++D G+ W A+ T + + ++ H W W L+ A
Sbjct: 284 V--SIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEA 341
Query: 364 TIPVDPKTKEV 374
TI V +T EV
Sbjct: 342 TIDV-SQTTEV 351
Score = 76.0 bits (187), Expect = 1e-14
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 436 VKGLTWGHAAV----------GNATWTGARLVDVLKAAGISPDQSLDSADVQHVHV---- 481
+KG G W A IS S D
Sbjct: 286 IKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDV 345
Query: 482 ----EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAV 525
E+ +KAVDS+ N QPE+ ++WNLRGVL+ ++HRV + + +
Sbjct: 346 SQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLGHSNL 393
Score = 67.9 bits (166), Expect = 4e-12
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 428 KENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
+V+ V+G+ W +A+GNA W GA+L DVL+ GI + + +HV
Sbjct: 104 TAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFV 158
Score = 56.3 bits (136), Expect = 2e-08
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
Y EP R P LK + +P+NAEPP S LV +++TP
Sbjct: 8 SEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPV 45
Score = 47.5 bits (113), Expect = 1e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
Y EP R P LK + +P+NAEPP S L SS +
Sbjct: 8 SEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYV 42
Score = 35.5 bits (82), Expect = 0.074
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 518 VEIWSKAVDSSYNTQPENGHP 538
E+ +KAVDS+ N QPEN
Sbjct: 349 TEVIAKAVDSAANVQPENVES 369
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
nitrate assimilation, oxidoreductase; HET: MTV; 1.70A
{Pichia angusta}
Length = 424
Score = 126 bits (319), Expect = 3e-31
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFA------KSPAIQELPVISAICLPVADA 302
K+++SD S + + D + + + AI +L + + IC P
Sbjct: 195 KLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQ 254
Query: 303 KLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD--------------- 347
+K+ + E+ G+ ++GGG I R++V++D+G++W +A+ +
Sbjct: 255 VIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGL 314
Query: 348 -SQAPLTRHWGWTLWRATIPVDPKTKEVSIM 377
+ W W+ +P+ + I+
Sbjct: 315 VNVCDRMSCLCWCFWKLKVPLSELARSKDIL 345
Score = 64.8 bits (158), Expect = 5e-11
Identities = 22/91 (24%), Positives = 27/91 (29%), Gaps = 21/91 (23%)
Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA---RMNDKENFEVKPVKGLTWGHAAVGNATW 451
+ F CA R KE VK G WG A + W
Sbjct: 60 KLSDIMEQFDIYSTPVTMV--------CAGNRR---KEQNMVKKGAGFNWGAAGTSTSLW 108
Query: 452 TGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
TG L DV+ A S + V +E
Sbjct: 109 TGCMLGDVIGKARPSK-------RARFVWME 132
Score = 64.5 bits (157), Expect = 6e-11
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 481 VEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSG 540
+I + +D QP + WN+ +L+N ++RV + +++ + P G
Sbjct: 342 KDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGESLRFEHPVVA--NKPGG 397
Query: 541 YQPRATLQGARLL 553
+ R +G +L
Sbjct: 398 WMDRVKAEGGDIL 410
Score = 33.3 bits (76), Expect = 0.43
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 130 KPYNAEPPPSMLV-ENFLTPS 149
P+N+EPP + L FLTP
Sbjct: 3 HPFNSEPPLTKLYDSGFLTPV 23
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation,
oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Length = 474
Score = 126 bits (317), Expect = 8e-31
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFA------KSPAIQELPVISAICLPVADA 302
K+++SD S + + D + + + AI +L + + IC P
Sbjct: 245 KLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQ 304
Query: 303 KLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD--------------- 347
+K+ + E+ G+ ++GGG I R++V++D+G++W +A+ +
Sbjct: 305 VIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGL 364
Query: 348 -SQAPLTRHWGWTLWRATIPVDPKTKEVSIM 377
+ W W+ +P+ + I+
Sbjct: 365 VNVCDRMSCLCWCFWKLKVPLSELARSKDIL 395
Score = 64.5 bits (157), Expect = 7e-11
Identities = 22/91 (24%), Positives = 27/91 (29%), Gaps = 21/91 (23%)
Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA---RMNDKENFEVKPVKGLTWGHAAVGNATW 451
+ F CA R KE VK G WG A + W
Sbjct: 110 KLSDIMEQFDIYSTPVTMV--------CAGNRR---KEQNMVKKGAGFNWGAAGTSTSLW 158
Query: 452 TGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
TG L DV+ A S + V +E
Sbjct: 159 TGCMLGDVIGKARPSK-------RARFVWME 182
Score = 64.5 bits (157), Expect = 8e-11
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 481 VEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSG 540
+I + +D QP + WN+ +L+N ++RV + +++ + P G
Sbjct: 392 KDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGESLRFEHPVVA--NKPGG 447
Query: 541 YQPRATLQGARLL 553
+ R +G +L
Sbjct: 448 WMDRVKAEGGDIL 460
Score = 50.6 bits (121), Expect = 2e-06
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 77 YGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEP 136
+ H ++ EL R + E K D +V LL+ T P+N+EP
Sbjct: 4 HHHHHHQDITELPFPVRQDSPLTEVLPTDLKT--KDNFV--ARDPDLLRLTGSHPFNSEP 59
Query: 137 PPSMLV-ENFLTPS 149
P + L FLTP
Sbjct: 60 PLTKLYDSGFLTPV 73
Score = 32.9 bits (75), Expect = 0.60
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 211 PVRSP-LLKATSLKPYNAEPPPSMLYSS 237
R P LL+ T P+N+EPP + LY S
Sbjct: 40 VARDPDLLRLTGSHPFNSEPPLTKLYDS 67
>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite
oxidase, molybdopterin, C-type cytochrome, heme,
electron transport; HET: MSS HEC; 1.8A {Starkeya
novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*
Length = 373
Score = 122 bits (309), Expect = 2e-30
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSP--AIQELPVISAICLPVADAKLKL 306
++ + D E W + Y+ + A + I V S I A +K
Sbjct: 219 EITVIDKEFDGFWMKTAYRIPDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKA 278
Query: 307 ENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIP 366
++G A+ GG I +V V+ D G++W A + + + W+A +P
Sbjct: 279 GEV--PLRGIAFDGGYG-ITQVSVSADAGKSWTNATLDPGLGK------YSFRGWKAVLP 329
Query: 367 VDPKTKEV 374
+ +
Sbjct: 330 LTKGDHVL 337
Score = 64.7 bits (158), Expect = 5e-11
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 27/100 (27%)
Query: 435 PVKGLTW-GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDS-------ADVQH 478
P++G+ + G + +WT A L P S +
Sbjct: 282 PLRGIAFDGGYGITQVSVSADAGKSWTNATL---------DPGLGKYSFRGWKAVLPLTK 332
Query: 479 VHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRV 518
+ +A ++ TQP WN G + N RV
Sbjct: 333 GDHVLMCRATNARGETQPMQ--ATWNPAGYMRNVVEATRV 370
Score = 60.0 bits (146), Expect = 1e-09
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA--RMNDKENFEVKPVKGLTWGHAAVGNATWT 452
+ +K F +V N+ C+ F V G + A+GNA W
Sbjct: 85 SLQDLKNDFPASEVVAVNQ--------CSGNSRG----FVEPRVGGGQLANGAMGNARWR 132
Query: 453 GARLVDVLKAAGISPD 468
G L VL+ AG+
Sbjct: 133 GVPLKAVLEKAGVQAG 148
Score = 51.2 bits (123), Expect = 9e-07
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 110 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
P VM P + PL+ T+ +P E P S+ E +TP+
Sbjct: 11 GERPLVMYPGKRPLIGLTA-RPPQLETPFSVFDEGLITPN 49
Score = 41.2 bits (97), Expect = 0.001
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 203 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
P VM P + PL+ T+ +P E P S+ L+
Sbjct: 11 GERPLVMYPGKRPLIGLTA-RPPQLETPFSVFDEGLI 46
Score = 35.4 bits (82), Expect = 0.075
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 517 RVEIWSKAVDSSYNTQPENGH--PSGY 541
+ +A ++ TQP P+GY
Sbjct: 334 DHVLMCRATNARGETQPMQATWNPAGY 360
>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex,
SOX system, sulfa oxidation, molybdenum cofactor, heme,
electron transfer; HET: MTE HEC; 1.33A {Paracoccus
pantotrophus}
Length = 390
Score = 122 bits (309), Expect = 4e-30
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
++ + D S + + Y P + S I P ++
Sbjct: 229 RLGIYDKAVESREETSKYTDLMPDGRAR-------KWTWVMDAKSVITSPSPQVPIRHGK 281
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
+ + G AWSG G+ I RVDV++D G+ W A TGQ T + I D
Sbjct: 282 GPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTARITGQALP------KALTRFHLDIDWD 334
Query: 369 PKTKEV 374
+
Sbjct: 335 GSEMLL 340
Score = 61.7 bits (150), Expect = 4e-10
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 27/107 (25%)
Query: 436 VKGLTW-GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDS-------ADVQHV 479
+ GL W G+ + G WT AR+ + + D
Sbjct: 286 ISGLAWSGNGRITRVDVSLDGGKNWTTARI---------TGQALPKALTRFHLDIDWDGS 336
Query: 480 HVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVD 526
+ + S+AVD + QP A + +RG +N YH ++ W D
Sbjct: 337 EMLLQSRAVDETGYVQPTKDA-LRAIRG-RNNVYHNNGIQTWWVKAD 381
Score = 60.1 bits (146), Expect = 2e-09
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 363 ATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVC 422
I + + + I + +KP F + + C
Sbjct: 78 GAIELSKQDYRLMIN--GLVEKPLVFTF------EDLLRFPRTTTTAFC---------EC 120
Query: 423 ARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD 468
A N + ++G + + N + G L +L AG+ P+
Sbjct: 121 AA-NGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPE 165
Score = 35.1 bits (81), Expect = 0.11
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 517 RVEIWSKAVDSSYNTQPE 534
+ + S+AVD + QP
Sbjct: 337 EMLLQSRAVDETGYVQPT 354
Score = 33.2 bits (76), Expect = 0.39
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPP-PSMLVENFLTPS 149
+ R ++ + P ++ P +E +TP
Sbjct: 31 IHFESHVKR-QYVEWLTESPVSSINFTPIHALEGTITPQ 68
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation,
transferase; HET: ATP; 3.00A {Geobacillus
stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB:
1miv_A* 1miy_A*
Length = 404
Score = 111 bits (280), Expect = 2e-26
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 646 FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEV 705
GT+ D F G E +++ + VG+ R +ED LR++R RF + + +
Sbjct: 120 MDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALA---PDT 176
Query: 706 LSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLF 752
AI N L +IS ER+ E+ K+LGG F+ + + L +
Sbjct: 177 EQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY 223
Score = 67.7 bits (166), Expect = 6e-12
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
D+L+G+ D+D AT+A P+ + A+F K + G KHGTV + +EV
Sbjct: 31 DLLLGRPIGDVDIATSALPEDVMAIF--PKTI---DVGSKHGTVVVVHKG-KAYEV 80
Score = 58.5 bits (142), Expect = 5e-09
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 898 ITTLRIDVTTDG--RHAEVQFTEDWKLDANRRDLTVNSMFL 936
+TT + D + R V F + D RRD T+N++ +
Sbjct: 80 VTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAM 120
Score = 54.2 bits (131), Expect = 1e-07
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 14/114 (12%)
Query: 811 EEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL-GTDETFAT 869
+ AI +N L +IS ER+ E+ K+LGG F+ + + E + +L G
Sbjct: 174 PDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQ 233
Query: 870 LDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLD 923
L +R + R L + G F WKL
Sbjct: 234 LRLAAAYRWPWLAAREE----------RWALLCHAL---GVQESRPFLRAWKLP 274
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 101 bits (255), Expect = 3e-26
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ Y+ ++ +H ++ IWV V+D+TEFV +HPGG +M AAGG +EPFWA+Y
Sbjct: 3 STHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALY 62
Query: 78 GVHLQDEVFELLESYRIGNI 97
VH Q V ELL Y+IG +
Sbjct: 63 AVHNQSHVRELLAQYKIGEL 82
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding,
nucleotide-binding, RNA-bindin transferase,
nucleotidyltransferase, ATP binding, A-phospho; 3.00A
{Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Length = 415
Score = 88.2 bits (219), Expect = 1e-18
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSA 708
D TV DY G +DLK GV +G+P +R +ED +R+LR RF A++ + E
Sbjct: 147 DFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRIS---PETAEP 203
Query: 709 IKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL 750
I L++I ++ E K+L + E + +L
Sbjct: 204 IPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245
Score = 60.8 bits (148), Expect = 8e-10
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
D+L+GKKP D D TNATP+Q++ +F R G + E EV
Sbjct: 44 DLLLGKKPKDFDVTTNATPEQVRKLF--RNCR---LVGRRFRLAHVMFGP-EIIEV 93
Score = 46.2 bits (110), Expect = 3e-05
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 811 EEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL 861
E I + L++I ++ E K+L + E + E ++F L
Sbjct: 198 PETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPL 248
Score = 31.6 bits (72), Expect = 1.3
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 898 ITTLRI-------DVTTDGRHAEVQFTEDWKL-----DANRRDLTVNSMFL 936
+ T R D TT R D DA RRD T+NS++
Sbjct: 93 VATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYY 143
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 76.6 bits (189), Expect = 3e-17
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 12 RAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI 70
+ E +++ +Y L ++ +W+V VYD+T F+ HPGG E++++ AG
Sbjct: 1 KGQEVETSVTYYRLEEVAKRNS-LKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDA 59
Query: 71 -EPFWAMYGVHLQDEVFELLESYRIGNISQEDSK 103
E F V + E+L+ Y IG+I D K
Sbjct: 60 SESFED---VGHSSDAREMLKQYYIGDIHPSDLK 90
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA,
nucleotide-binding, RNA-binding; 2.37A {Thermotoga
maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Length = 441
Score = 84.4 bits (209), Expect = 3e-17
Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 18/175 (10%)
Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSA 708
G + D+F G+ DLK+GV + +D RILR RF R E
Sbjct: 145 FGLLIDFFGGYRDLKEGVIRVLHTL--SFVDDPTRILRAIRFEQRFDFRIE---ETTERL 199
Query: 709 IKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVE 766
+K ++ L +G R+ EL KIL + ++ + Q ++ +++
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLK-SIRRMAQFDVI----------KHLFP 248
Query: 767 LMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNL 821
Y + + +P N + +F+A + + +E ++
Sbjct: 249 KTYYTPSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRY 303
Score = 57.8 bits (140), Expect = 8e-09
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
D+L+G K DID + + K +K T + ++
Sbjct: 46 DLLLGIKNLDIDIVVEGNALEFAEYAK-RFLPGKLVKHDKFMTASLFLKGGLRIDI 100
Score = 48.5 bits (116), Expect = 7e-06
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 811 EEVLSAIKKNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL 861
E +K+ ++ L +G R+ EL KIL + + +M + ++ HL
Sbjct: 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHL 246
Score = 41.2 bits (97), Expect = 0.001
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 898 ITTLRIDV-TTDGRHAEVQFTEDWKLDANRRDLTVNSMFL 936
I T R++ + + +V+ + K D RRD T+N+M +
Sbjct: 100 IATARLEYYESPAKLPDVEMS-TIKKDLYRRDFTINAMAI 138
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport;
HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Length = 104
Score = 76.6 bits (189), Expect = 4e-17
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 13 AGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIE 71
A E + +Y+L +IQ H + S W++ VYD+T+F++ HPGG E++ + AGG
Sbjct: 1 AEESSKAVKYYTLEEIQKHNN-SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDAT 59
Query: 72 PFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKD 108
V + EL +++ IG + +D K
Sbjct: 60 --ENFEDVGHSTDARELSKTFIIGELHPDDRSKITKP 94
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 76.4 bits (188), Expect = 7e-17
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 6 KALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMK 64
L + ++D++NH + W V VYDI +F I+ +
Sbjct: 9 SGRENLYFQGNNEKVTLVRIADLENHNN-DGGFWTVIDGKVYDIKDFQTQSLTENSILAQ 67
Query: 65 AAGGSI-EPFWAMYGVHLQDEVFELLESYRIGNISQEDSK 103
AG ++ E + ++ +G + D +
Sbjct: 68 FAGEDPVVAL---EAALQFEDTRESMHAFCVGQYLEPDQE 104
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 75.4 bits (186), Expect = 8e-17
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 16 PISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPF 73
+ +++ +++ + K W + VYD+T F+ HPGG E++++ AG E F
Sbjct: 2 SSEDVKYFTRAEVAKNNT-KDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHF 60
Query: 74 WAMYGVHLQDEVFELLESYRIGNISQED 101
V + E+++ Y++G + E+
Sbjct: 61 ED---VGHSSDAREMMKQYKVGELVAEE 85
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 73.8 bits (182), Expect = 2e-16
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQ 82
Y+ ++ H ++ +W+++ V+D+T F + HPGG++I+ AG H++
Sbjct: 6 YTKEEVAKHNT-QNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVLKTLAPHVK 64
Query: 83 --DEVFELLESYRIGNI 97
D V + L+ IG +
Sbjct: 65 AADVVMKKLKQTCIGKV 81
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A
1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A*
1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A*
1m20_A* ...
Length = 93
Score = 73.9 bits (182), Expect = 3e-16
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWA 75
+ +Y+L +IQ H + S W++ VYD+T+F++ HPGG E++ + AGG E F
Sbjct: 2 KAVKYYTLEEIQKHNN-SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60
Query: 76 MYGVHLQDEVFELLESYRIGNISQEDSKLAAK 107
V + EL +++ IG + +D K
Sbjct: 61 ---VGHSTDARELSKTFIIGELHPDDRSKITK 89
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 72.4 bits (178), Expect = 9e-16
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 15 EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EP 72
E +TLP ++L + H W+ VYD+T +V HPG +++ G E
Sbjct: 2 ETEATLPVFTLEQVAEHHS-PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEA 60
Query: 73 FWAMYGVHL-QDEVFELLESYRIGNISQE 100
+ LL+ Y IG + +
Sbjct: 61 WETKSYGEPHSSLAARLLQRYLIGTLEEI 89
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme,
endoplasmic reticulu flavoprotein, iron, metal-binding,
NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Length = 88
Score = 70.8 bits (174), Expect = 3e-15
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGG-SIEPFWA 75
L + +++ H K W+ R VY+++ +++ HPGG + +M+AAG E F
Sbjct: 3 GRLIEVTEEELKKHNK-KDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQ 61
Query: 76 MYGVHLQDEVFELLESYRIGNISQEDSKL 104
VH +L+ +G ++ + + L
Sbjct: 62 ---VHRWVNYESMLKECLVGRMAIKPAVL 87
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: APC; 2.80A {Aquifex aeolicus}
SCOP: a.173.1.1 d.218.1.4
Length = 390
Score = 76.3 bits (188), Expect = 1e-14
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 650 GTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR----ICNNPNNHKEEV 705
GT+ DYF G DLK V + ED +RILR RF R +
Sbjct: 121 GTLIDYFGGLRDLKDKVIRVLHPV--SFIEDPVRILRALRFAGRLNFKL-------SRST 171
Query: 706 LSAIKN--NLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQ 747
+K NL L R+ E+ L E +L++ +
Sbjct: 172 EKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLE-ILELYRK 214
Score = 50.1 bits (120), Expect = 2e-06
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
D+L+GK+ D+DF ++ A + + GT ++ + E
Sbjct: 22 DILLGKEVWDVDFVVEGNAIELAKELA-RRHGVNVHPFPEFGTAHLKIGKLK-LEF 75
Score = 45.9 bits (109), Expect = 4e-05
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%)
Query: 811 EEVLSAIKK--NLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL--GTDET 866
+K+ NL L R+ E+ L E++ + + + G
Sbjct: 169 RSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWN 228
Query: 867 FATLDFEGLFRSMPIPFTLLFSANFFRNLA-RITTLRIDVTTDGRHAEVQFTEDWKLDAN 925
L R + L FS + L ++ F E+ +
Sbjct: 229 EKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNL---DYERGKHFLEEMSAPSW 285
Query: 926 RRDL 929
R+
Sbjct: 286 VRET 289
Score = 36.6 bits (85), Expect = 0.033
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 898 ITTLRIDV-TTDGRHAEVQFTEDWKLDANRRDLTVNSM 934
T R + G + +V+ K D RRD T+N+M
Sbjct: 75 FATARRETYPRPGAYPKVEPA-SLKEDLIRRDFTINAM 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 2e-11
Identities = 64/440 (14%), Positives = 129/440 (29%), Gaps = 130/440 (29%)
Query: 13 AGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEP 72
A P +L + + + + +F GG+ G+ +
Sbjct: 133 AKRPFDKKSNSAL--FRAVGEGNAQLVAIF---------------GGQ-------GNTDD 168
Query: 73 FWAMYGVHLQDEVFELLESYR------IGNISQEDSKLAAKDIASDPYVME--PVRSPLL 124
++ +E+ +L ++Y I ++ S+L + ++ + + L
Sbjct: 169 YF--------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WL 219
Query: 125 KATSLKP---YNAEPPPSM----LVE--NF--------LTPSLLSQVGSSTITLDQAIVS 167
+ S P Y P S +++ ++ TP L Q +V+
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 168 KQLSSFKHSDEKL-----KLVKVMA--GNISQE---DSKLAAKDIASDPYVMEPVRSPLL 217
+ S E K + V+ G E ++ L + E V SP+L
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 218 KATSLKP---------YNAE-PPPSMLYSSLLRIPFCSHTGKVILSDH-ESTSHWQQNDY 266
++L N+ P + SL +++S +S
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISL----VNGAK-NLVVSGPPQSLYGLNLTLR 394
Query: 267 KGFSPSTDWDTVDFAKSPAIQELPVISAICLPV---------ADAKLKLENHQMEVQGYA 317
K +PS +D ++ P + S LPV A + + +
Sbjct: 395 KAKAPSG----LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN-KDLVKNNVS 449
Query: 318 WSGGGKAI-VRVDVTIDQGRTWHVANFTGQDSQ---APLTRHWGWTLWRA--TIPVD-PK 370
++ I V + F G D + ++ + +PV
Sbjct: 450 FNAKDIQIPV-----------YDT--FDGSDLRVLSGSISE----RIVDCIIRLPVKWET 492
Query: 371 TKEVSIMDMLMGKKPHDIDF 390
T + H +DF
Sbjct: 493 TTQFKA--------THILDF 504
Score = 64.3 bits (156), Expect = 2e-10
Identities = 119/726 (16%), Positives = 200/726 (27%), Gaps = 298/726 (41%)
Query: 124 LKATSLKPY-----NAEP----PPSM------LVENFLTPSLLSQVGSSTITLDQAIVSK 168
+ A S +P + E P + L E F +L + + D +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN--KILPEP-TEGFAADDEPTTP 57
Query: 169 Q--LSSF-------------KHSDEKLKLVKVMAGNISQ-EDSKLAAKDI----ASDPYV 208
+ F D+ L L +++ E+ L DI A
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLC------LTEFENCYLEGNDIHALAAKLL-- 109
Query: 209 MEPVRSPLLKATS-LKPY-NA-----EPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHW 261
+ + L+K +K Y A P S+L R G L
Sbjct: 110 -QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR---AVGEGNAQL--------- 156
Query: 262 QQNDYK---GFSPSTDWDTVDFAKSPAIQEL--------PVISAICLPVADAKLKLENHQ 310
G + D+ F +EL ++ + A+ +L
Sbjct: 157 ----VAIFGGQGNTDDY----F------EELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 311 MEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPK 370
++ + G +++ W + + +IP+
Sbjct: 203 LDAEKVFTQG-------LNI-----LEW----LENPSNTPD-------KDYLLSIPI--- 236
Query: 371 TKEVSIMDMLMGKKP--------HDIDFA--TNATPDQMKAMFAEEKVRTFNEKGE-KHG 419
S P H + A TP ++++ KG H
Sbjct: 237 ----SC--------PLIGVIQLAHYVVTAKLLGFTPGELRSYL----------KGATGHS 274
Query: 420 ------TVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDS 473
A + E+F V K +T + G R +A P+ SL
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITV-------LFFIGVR---CYEAY---PNTSLPP 321
Query: 474 ADVQHVHVEIWSKAVDSSYNTQ--PESFANIWNL-RGVL------SNAY--HRVRVEIWS 522
+ ++ DS N + P +I NL + + +N++ +VEI
Sbjct: 322 SILE-----------DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-- 368
Query: 523 KAVDSSYNTQPEN----GHPSGYQPRATLQGARLLTR----PPN------PHSVRFKSGP 568
S N +N G P +L G L R P P S R
Sbjct: 369 ----SLVNG-AKNLVVSGPP------QSLYGLNLTLRKAKAPSGLDQSRIPFSER----- 412
Query: 569 DGKMKLDSPEFHSCFTPELKRLAGI---FEKHGYQLRIAGEGTVTAKVLSYRNRREKEDR 625
K +F + F P + F H + L A + + +D
Sbjct: 413 ----K---LKFSNRFLP-------VASPF--HSHLLVPA-----SDLIN--------KDL 443
Query: 626 IGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRIL 685
+ N F + + VYD F+G DL G RI + I+
Sbjct: 444 VKNNVSFNAKDIQI-----------PVYDTFDG-SDL----RVLSGSISERIVDC---II 484
Query: 686 RYFRFFARICNNPNNHKEEVL-------SAI----KNNLDGLHNISGERIWTELNKILGG 734
R + H +L S + N DG +G R+ I+ G
Sbjct: 485 RLPVKWETTTQFKATH---ILDFGPGGASGLGVLTHRNKDG----TGVRV------IVAG 531
Query: 735 SFSKEM 740
+
Sbjct: 532 TLDINP 537
Score = 53.9 bits (129), Expect = 3e-07
Identities = 81/556 (14%), Positives = 147/556 (26%), Gaps = 204/556 (36%)
Query: 68 GSIEPFW----AMYGV--HLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRS 121
GS+E A + + LQ++ F + + AA D EP +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQ-F-------NKILPEPTEGFAADD--------EPT-T 56
Query: 122 PLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFK------- 174
P AE LV FL + S V S + +++ L+ F+
Sbjct: 57 P-----------AE-----LVGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 175 --HSDEKLKLVKVMAGNISQEDSK--------LAAKDIASDPYVMEPVRSPLLKATS--- 221
H+ L + K + A+ +A P+ + S L +A
Sbjct: 100 DIHA-----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPF-DKKSNSALFRAVGEGN 153
Query: 222 LKPY-------NAEPPPSML------YSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKG 268
+ N + L Y L+ + + + +T ++ +G
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 269 F-----------SPSTDWDTVDFAKSPAIQELPVI---SAICLPVADAKLKLENHQMEVQ 314
+P D+ P P+I V L ++
Sbjct: 213 LNILEWLENPSNTPDKDY----LLSIPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 315 GYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLW---RA--TIP--- 366
+G + +V V I + +W +F +A +T + R P
Sbjct: 267 LKGATGHSQGLV-TAVAIAETDSW--ESFFVSVRKA-IT----VLFFIGVRCYEAYPNTS 318
Query: 367 VDPKTKEVSIMD-------ML--MGKKPHDID---FATNAT------------------- 395
+ P E S+ + ML + TN+
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 396 ----P-------------------DQMKAMFAEEKVRTFNE-------------KGEKHG 419
P DQ + F+E K++ N
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 420 TVCARMNDKENFEVK----PVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSAD 475
+ + +F K PV T+ G+ D+ +G ++ +D
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVY-----------DTFDGS---DLRVLSGSISERIVDCII 484
Query: 476 VQHVHVEIWSKAVDSS 491
V W
Sbjct: 485 RLPVK---WETTTQFK 497
Score = 45.0 bits (106), Expect = 1e-04
Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 91/276 (32%)
Query: 260 HWQQNDYKGFS--------PSTDWDTVDF--AKSPAIQELPVISAICLPVADAKLKLENH 309
H++ Y GFS P T+ F K I+E + I + D KLK E
Sbjct: 1652 HFKDT-Y-GFSILDIVINNPVNL--TIHFGGEKGKRIREN-YSAMIFETIVDGKLKTEKI 1706
Query: 310 QMEV----QGYAWSG-GGK---------AIVRVDVTI-----DQGRTWHVANFTG----- 345
E+ Y + G A+ ++ +G A F G
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 346 -------------QDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFAT 392
+ + + G T+ A +P D + S M+ A
Sbjct: 1767 YAALASLADVMSIESL-VEVVFYRGMTMQVA-VPRDELGR--SNYGMI----------AI 1812
Query: 393 NATPDQMKAMFAEEKVRTFNEK-GEKHGTVCARMNDKENFEVKPVKGLTW---GH-AAVG 447
N P ++ A F++E ++ E+ G++ G + +N N V+ + G A+
Sbjct: 1813 N--PGRVAASFSQEALQYVVERVGKRTGWLVEIVNY--N-----VENQQYVAAGDLRAL- 1862
Query: 448 NATWTGARLVDVLKAAGISPDQSLDSADVQH-VHVE 482
+ +VL + Q +D ++Q + +E
Sbjct: 1863 ------DTVTNVLNFIKL---QKIDIIELQKSLSLE 1889
Score = 34.6 bits (79), Expect = 0.20
Identities = 38/222 (17%), Positives = 71/222 (31%), Gaps = 65/222 (29%)
Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI-------------------IM 63
YS + D K +F++ T + G + +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 64 KAAGGSIEPFWAMY-GVH----------------LQDEVFELLESYRIGNISQEDSKLAA 106
K+ G + P A + G H ++ V E++ YR G Q
Sbjct: 1748 KSKG--LIPADATFAG-HSLGEYAALASLADVMSIESLV-EVVF-YR-GMTMQV---AVP 1798
Query: 107 KD-IASDPYVM---EPVR-SPLLKATSLKPYNAE--PPPSMLVE--NFLTPSLLSQV--- 154
+D + Y M P R + +L+ LVE N+ + Q
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN--QQYVAA 1856
Query: 155 GSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSK 196
G LD + L+ K +K+ ++++ ++S E+ +
Sbjct: 1857 G-DLRALDTV--TNVLNFIKL--QKIDIIELQK-SLSLEEVE 1892
Score = 33.5 bits (76), Expect = 0.39
Identities = 50/318 (15%), Positives = 82/318 (25%), Gaps = 120/318 (37%)
Query: 492 YNTQPESFANIWNLRGVLSNA-YHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRA----- 545
Y T + ++WN A H +S N H G + +
Sbjct: 1636 YKTSK-AAQDVWN------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 546 ------TLQGARLLTRPPNPH------SVRFKSGPDGKMKLDSPEF---------HSCF- 583
T+ +L T S F G L + +F + F
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTF-RSEKGL--LSATQFTQPALTLMEKAAFE 1745
Query: 584 -------TPELKRLAGIFEKH--G-YQ-L-RIAG----EGTVTAKVLSYRNRREKEDRIG 627
P AG H G Y L +A E V +V+ YR G
Sbjct: 1746 DLKSKGLIPADATFAG----HSLGEYAALASLADVMSIESLV--EVVFYR---------G 1790
Query: 628 ENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVS-RIQEDYLRILR 686
+D R + G+ A V+ ++ L+
Sbjct: 1791 ------MTMQVAVPRDELGRSNY--------------GMIAINPGRVAASFSQEALQ--- 1827
Query: 687 YFRFFARICNNPNNHKEEVLSAIKNNLDG----LHNISG-----ERIWTELN-----KI- 731
+ ++ + N++ +G + + LN KI
Sbjct: 1828 ------YVVERVGKRTGWLVEIVNYNVENQQYV---AAGDLRALDTVTNVLNFIKLQKID 1878
Query: 732 ---LGGSFSKEMMLKMLY 746
L S S E + L+
Sbjct: 1879 IIELQKSLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 5e-09
Identities = 68/450 (15%), Positives = 126/450 (28%), Gaps = 129/450 (28%)
Query: 469 QSLDSADVQHVHVEIWSKA-VDSSYNTQPE---SFANIWNLRGVLSNAYHRVRVEIWSKA 524
+ D DVQ + I SK +D ++ + W L + VE +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VE---EV 86
Query: 525 VDSSYN-----TQPENGHPSGYQPRATLQGARLLTRPP--NPHSV-RFKSGPDGKMKLDS 576
+ +Y + E PS Q RL ++V R +KL
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR----LQPYLKL-- 140
Query: 577 PEFHSCFTPELKRLAGIFEKHGYQLRIAGEG--TVTAKVLSYRNRREKEDRIGENQPFRK 634
EL+ + G + G G V V ++ F+
Sbjct: 141 ---RQALL-ELRPAKNVL-IDG----VLGSGKTWVALDVC-------LSYKVQCKMDFKI 184
Query: 635 --LTLSVQDKDRS---------FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR 683
L L + + +++D + ++K RI
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----------LRIHSIQAE 233
Query: 684 ILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELN---KILGGSFSKEM 740
+ R + ++ +L + L N+ + W N KIL
Sbjct: 234 LRRLLK--------SKPYENCLL--V---LL---NVQNAKAWNAFNLSCKIL-------- 269
Query: 741 MLKMLYQNLLLFSKLKATTMREYIVELMKYK-EKSELIKDFHKW------RLP-----TF 788
+ + + L A T ++ E+ K+ LP T
Sbjct: 270 ---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 789 PMNGNII----RQFFARICNNPNNHKEEVLSAIKKNLDGLH------------------N 826
P +II R A N + + +++ + I+ +L+ L +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 827 ISG---ERIWTELNKILGGSFSKEMMLKML 853
I IW ++ K ++ L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 58.3 bits (140), Expect = 1e-08
Identities = 79/565 (13%), Positives = 169/565 (29%), Gaps = 175/565 (30%)
Query: 377 MDMLMGKKPH---DI----------DFATNATPDQMKAMFAEEKVR-TFNEKGEKHGTVC 422
MD G+ + DI +F D K++ ++E++ K GT+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65
Query: 423 ARMNDKENFEVKPVKGLTWGHAAVG-----NATWTGARLVDVLKAAGISPDQSLDSADVQ 477
R+ K + + V N + L+ +K P S+ +
Sbjct: 66 -RLFWT--LLSKQEEMV---QKFVEEVLRINYKF----LMSPIKTEQRQP--SMMT---- 109
Query: 478 HVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENG- 536
++ + D YN + FA Y+ R++ + K + +P
Sbjct: 110 ----RMYIEQRDRLYND-NQVFAK-----------YNVSRLQPYLKLRQALLELRPAKNV 153
Query: 537 --H---PSGYQPRA--TLQGARLLTRPPNP-HSVRFKSGPDGKMKLDSPEFHSCFTPE-- 586
SG A ++ + + K +C +PE
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---------------NCNSPETV 198
Query: 587 LKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRK--LTLS-VQDKD 643
L+ L + + + + K L + + + R+ +++P+ L L VQ+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 644 --RSFRL---------DGTVYDYFNG---------------HEDLKKGVCA-FVGDPVSR 676
+F L V D+ + D K + ++
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 677 IQEDYLRI-----------LRYFRFFARICNNPNNHKEEVLSAIKNNLDGLH-------- 717
+ + L +R A N + + +++ + I+++L+ L
Sbjct: 318 LPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 718 ----------NISG---ERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYI 764
+I IW ++ K +++ L++ L+ + K +T+
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 765 VELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDG- 823
+ ++ K K E H+ +I+ + + ++ I LD
Sbjct: 431 I-YLELKVKLENEYALHR----------SIVDHYNIPKTFDSDD-------LIPPYLDQY 472
Query: 824 --------LHNISGERIWTELNKIL 840
L NI T +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 42.9 bits (100), Expect = 5e-04
Identities = 61/417 (14%), Positives = 121/417 (29%), Gaps = 131/417 (31%)
Query: 20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEII---MKAAGGSI------ 70
Y++S +Q + L RQ + ++ P ++ + +G +
Sbjct: 126 FAKYNVSRLQPYLKL--------RQALL------ELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 71 -----------EPFWAMYG-VHLQDEVFELLES--YRI-GNISQEDSKLAAKDIASDPYV 115
+ FW + + V E+L+ Y+I N + ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIKLR 226
Query: 116 MEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKH 175
+ +++ L + KPY +LV L V ++ ++F
Sbjct: 227 IHSIQAELRRLLKSKPY----ENCLLV--------LLNVQNAKA----------WNAF-- 262
Query: 176 SDEKLKLVKVMAGNISQEDSKLAAK------DIASDPYVMEPVRSPLLKATSLKPYNAEP 229
+ K++ + D AA D S + V+S LLK +P +
Sbjct: 263 -NLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDL 318
Query: 230 PPSMLYSSLLRIPFCSHTGKVI-LSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQE 288
P +L ++ R+ +I S + + W W V+ K I E
Sbjct: 319 PREVLTTNPRRL-------SIIAESIRDGLATWDN-----------WKHVNCDKLTTIIE 360
Query: 289 LPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQ---GRTWHVANFTG 345
L V + E + ++ I W +
Sbjct: 361 ------SSLNVLEPA--------EYRKMFDR---LSVFPPSAHIPTILLSLIW--FDVIK 401
Query: 346 QDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAM 402
D + + ++L + PK +SI I + A+
Sbjct: 402 SDVMVVVNKLHKYSL----VEKQPKESTISI---------PSIYLELKVKLENEYAL 445
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 56.6 bits (137), Expect = 3e-08
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 24 SLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWAMYGVHL 81
S +++ H WVV VYD+T F+ HPGG ++I AG + F +H
Sbjct: 12 SPAEVAKHNK-PDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF---EPLHA 67
Query: 82 QDEVFELLE-SYRIGNISQE-DSKLAAKDIASDPYVMEPVRSPLLKAT 127
+ + + + ++G + +L A + R LK+
Sbjct: 68 PNVIDKYIAPEKKLGPLQGSMPPELVCPPYAPGETKEDIARKEQLKSL 115
>2iqc_A Protein FACF, fanconi anemia group F protein; heat-like repeat,
DNA-damage, complex subunit, protein binding; 2.40A
{Homo sapiens}
Length = 210
Score = 34.0 bits (77), Expect = 0.14
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 761 REYIVELMKYKEKSELIKDFHKWRLPTFP-MNGNIIRQFFARICNNPNNHKEEVLSAIK- 818
Y+ L + ++ W + + F +C P K++VL+A++
Sbjct: 125 PVYLGLLTDWGQRLHYDLQKGIWVGTESQDVPWEELHNRFQSLCQAPPPLKDKVLTALET 184
Query: 819 -KNLDGLHNISGERIWTELNKILGG 842
K DG + G IWT+L L
Sbjct: 185 CKAQDGDFEVPGLSIWTDLLLALRS 209
Score = 31.7 bits (71), Expect = 0.89
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 691 FARICNNPNNHKEEVLSAIKN--NLDGLHNISGERIWTELNKILGG 734
F +C P K++VL+A++ DG + G IWT+L L
Sbjct: 164 FQSLCQAPPPLKDKVLTALETCKAQDGDFEVPGLSIWTDLLLALRS 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.20
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 124 LKA--TSLKPYNAEPPPSMLVE 143
LK SLK Y + P++ ++
Sbjct: 22 LKKLQASLKLYADDSAPALAIK 43
Score = 31.8 bits (71), Expect = 0.45
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 217 LKA--TSLKPYNAEPPPSM 233
LK SLK Y + P++
Sbjct: 22 LKKLQASLKLYADDSAPAL 40
Score = 28.4 bits (62), Expect = 6.1
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 21/46 (45%)
Query: 178 EKLKLVKVMAGNISQEDS-KLAAKDIASDPYVMEPVRSPLL--KAT 220
EK L K+ + S KL A D +P L KAT
Sbjct: 18 EKQALKKL-------QASLKLYADD-----------SAPALAIKAT 45
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 30.7 bits (68), Expect = 3.1
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 14/63 (22%)
Query: 527 SSYNTQPENGHP-----------SGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLD 575
+SY P G P T ++R + R + G DG +L
Sbjct: 286 NSYTNTPYTGALGLLDFALELEFRNLTPGNTNT---RVSRYSSTARHRLRRGADGTAELT 342
Query: 576 SPE 578
+
Sbjct: 343 TTA 345
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 30.3 bits (68), Expect = 3.1
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 387 DIDFATNATPDQMKAMFAEEKVRTFNEKG--EKHGTVCARMNDKENFEVKPVKGLTWGHA 444
D + A + + R F +G G ++ N +KG G
Sbjct: 85 SADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVT 144
Query: 445 AVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHV 481
A G++T L G+ DV + V
Sbjct: 145 APGSSTNMVVNFF--LAKHGLKAS------DVSFIGV 173
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 30.3 bits (68), Expect = 3.1
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 9/126 (7%)
Query: 659 HEDLKKGVCAF--VGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGL 716
E LK+ + A V + +I L R R + K+ + + +
Sbjct: 173 KECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNI 232
Query: 717 HNISGERIWTELNK-ILGGSFSK-----EMMLKMLYQNLLLFSKLKATTMREYIVELMKY 770
G+ I N+ I+ G+ ++ E + L+ L++ K R +Y
Sbjct: 233 DGWEGKDIGQCCNEFIMEGTLTRVGAKHERHI-FLFDGLMICCKSNHGQPRLPGASNAEY 291
Query: 771 KEKSEL 776
+ K +
Sbjct: 292 RLKEKF 297
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 30.2 bits (69), Expect = 3.4
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 15/55 (27%)
Query: 884 TLLFSA-----------NFFRNLARITTLRIDVTTDG---RHAEVQFTEDWKLDA 924
+LFSA F N I +++ +G + + Q +E+ K +
Sbjct: 294 IVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ-SEEHKYNV 347
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 29.6 bits (66), Expect = 4.6
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFW 74
S + +Q L+ V G+Y + E + +P + + A +
Sbjct: 141 KMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMY 193
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 29.2 bits (66), Expect = 6.4
Identities = 7/66 (10%), Positives = 16/66 (24%), Gaps = 7/66 (10%)
Query: 305 KLENHQMEVQGYAWSGGGKAIVR--VDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWR 362
+ + S G+ +D + + + L + L
Sbjct: 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQV---NVYDLK--KLNSKSRSLYGNRDGILNP 379
Query: 363 ATIPVD 368
IP+
Sbjct: 380 LPIPLY 385
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding,
DNA binding protein; NMR {Saccharomyces cerevisiae}
Length = 116
Score = 27.6 bits (61), Expect = 7.1
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 706 LSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLL 751
L + G ++ + W+ + + L S L+ +Y +LL
Sbjct: 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQ--ISDYQQLESIYFRILL 97
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial
neuraminidase repeat; HET: MSE GOL; 1.90A
{Parabacteroides distasonis}
Length = 523
Score = 29.1 bits (64), Expect = 7.3
Identities = 6/59 (10%), Positives = 19/59 (32%)
Query: 303 KLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLW 361
+ +++ + + + D+G+TWH+ N ++ +
Sbjct: 330 GITMQDGTLVFPIQFIDATRVPNAGIMYSKDRGKTWHLHNLARTNTTEAQVAEVEPGVL 388
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 28.8 bits (65), Expect = 8.7
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 16/112 (14%)
Query: 399 MKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNA----TWTGA 454
E++ ++ + A + + ++ + AV T T
Sbjct: 148 FHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSV---AEAVKGVDIITTVTAD 204
Query: 455 RLVD-VLKAAGISPDQSL-----DSADVQHVHVEIWSKA---VDSSYNTQPE 497
+ ++ + P L D +H ++ A V+ T+ E
Sbjct: 205 KAYATIITPDMLEPGMHLNAVGGDCPGKTELHADVLRNARVFVEYEPQTRIE 256
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 29.0 bits (65), Expect = 8.8
Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 19/193 (9%)
Query: 565 KSGPDGKMKL-DSPE-----FHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRN 618
KS PD + + D+ E + P +K+ A G + V
Sbjct: 233 KSDPDSAIFMEDTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVY 292
Query: 619 RREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQ 678
R + + + +D +++F D + LK + V + ++
Sbjct: 293 ARPGAAATIDGTTY----ATYEDLEQAFVSDEV------SEDALKSCLIDEVNALLEPVR 342
Query: 679 EDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSK 738
+ + + + + L+ + + L L +
Sbjct: 343 QHFASNEEAHELLEAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEG- 401
Query: 739 EMMLKMLYQNLLL 751
M+K+ +
Sbjct: 402 --MIKVTKDFIAA 412
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,612,212
Number of extensions: 905320
Number of successful extensions: 2087
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2025
Number of HSP's successfully gapped: 104
Length of query: 939
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 836
Effective length of database: 3,825,930
Effective search space: 3198477480
Effective search space used: 3198477480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.3 bits)