RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11686
(939 letters)
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 91
Score = 86.1 bits (213), Expect = 6e-21
Identities = 35/88 (39%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ P Y+ ++ H+ + +WV V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 1 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 60
Query: 78 GVHLQDEVFELLESYRIGNISQEDSKLA 105
VH + V ELL+ Y++G +S +++ A
Sbjct: 61 AVHGEPHVLELLQQYKVGELSPDEAPAA 88
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 86.9 bits (215), Expect = 7e-21
Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD 347
ELPV SA+ P A + ++ V+GYAWSGGG+ +VRVDV++D GRTW VA G
Sbjct: 1 ELPVQSAVTQPRPGAAVPPG--ELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDK 58
Query: 348 SQAPLTRHWGWTLWRATIPVDP---KTKEVSIMDMLMGKKPHDIDFATN 393
AP R W W LW T+PV+ +D +P + N
Sbjct: 59 --APPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWN 105
Score = 65.8 bits (160), Expect = 2e-13
Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 447 GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVEIWSKAVDSSYNTQPESFANIW 503
G TW ARL+ G + +L V +EI KAVDSSYN QP+S A IW
Sbjct: 45 GGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIW 104
Query: 504 NLRGVLSNAYHRVRVEI 520
NLRGVLS A+HRVRV +
Sbjct: 105 NLRGVLSTAWHRVRVSV 121
Score = 32.2 bits (73), Expect = 0.084
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 476 VQHVHVEI-----WSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYN 530
V V V + W A + P A W L + +EI KAVDSSYN
Sbjct: 36 VVRVDVSLDGGRTWKVA-RLMGDKAPPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYN 94
Query: 531 TQPENGHP 538
QP++ P
Sbjct: 95 VQPDSVAP 102
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal
domains {Human (Homo sapiens), mitochondrial [TaxId:
9606]}
Length = 204
Score = 89.0 bits (220), Expect = 1e-20
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 4/187 (2%)
Query: 669 FVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTEL 728
FVG RIQEDYLRILRYFRF+ RI + P +H E L AI N GL ISGERIW EL
Sbjct: 4 FVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVEL 63
Query: 729 NKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTF 788
KIL G+ ++ + ++ + L A + E K + + L +
Sbjct: 64 KKILVGNHVNHLIHLIYDLDVAPYIGLPAN---ASLEEFDKVSKNVDGFSPKPVTLLASL 120
Query: 789 PMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEM 848
+ + + R+ K L +K D + + S +
Sbjct: 121 FKVQDDVTKLDLRL-KIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDA 179
Query: 849 MLKMLEI 855
++ E+
Sbjct: 180 TTRVCEL 186
Score = 47.0 bits (111), Expect = 2e-06
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 794 IIR--QFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLK 851
I+R +F+ RI + P +H E L AI +N GL ISGERIW EL KIL G+ ++
Sbjct: 19 ILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHL 78
Query: 852 MLEINMFPHLGTDETFATLDFEGLFRSM----PIPFTLL 886
+ ++++ P++G + +F+ + +++ P P TLL
Sbjct: 79 IYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLL 117
Score = 35.8 bits (82), Expect = 0.014
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 688 FRFFARICNNPNNHKE--EVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKML 745
A + ++ + L K + I R LK
Sbjct: 114 VTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKAT------DSSDPLK-P 166
Query: 746 YQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKW 783
YQ+ ++ S+ + EL+KY+ + L+K+ +W
Sbjct: 167 YQDFIIDSREPDA--TTRVCELLKYQGEHCLLKEMQQW 202
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 127
Score = 83.5 bits (206), Expect = 1e-19
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD 347
+ PV SAIC +K ++ ++GYA SGGG+ I RVD+++D G+ W A+ T +
Sbjct: 1 DFPVQSAICSVEDVQMVK--PGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEP 58
Query: 348 SQAPLTRH-----WGWTLWRATIPVDPKTKEVSI--MDMLMGKKPHDIDFATN 393
+ ++ H W W L+ ATI V +T EV +D +P +++ N
Sbjct: 59 GKQYISEHSSSDKWAWVLFEATIDV-SQTTEVIAKAVDSAANVQPENVESVWN 110
Score = 63.1 bits (153), Expect = 2e-12
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
E+ +KAVDS+ N QPE+ ++WNLRGVL+ ++HRV + +
Sbjct: 88 EVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRL 126
Score = 32.7 bits (74), Expect = 0.067
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 476 VQHVHVEI-----WSKAV----DSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVD 526
++ V + + W +A S ++ W + E+ +KAVD
Sbjct: 36 IERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVD 95
Query: 527 SSYNTQPENGHP 538
S+ N QPEN
Sbjct: 96 SAANVQPENVES 107
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 79.9 bits (197), Expect = 6e-19
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
Y+ ++ +H ++ IWV V+D+TEFV +HPGG +M AAGG +EPFWA+Y VH
Sbjct: 5 YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 64
Query: 82 QDEVFELLESYRIGNI 97
Q V ELL Y+IG +
Sbjct: 65 QSHVRELLAQYKIGEL 80
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal
domains {Bacillus stearothermophilus [TaxId: 1422]}
Length = 265
Score = 79.5 bits (195), Expect = 6e-17
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 6/165 (3%)
Query: 669 FVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTEL 728
VG+ R +ED LR++R RF + + + AI N L +IS ER+ E+
Sbjct: 4 TVGEAEKRFREDALRMMRAVRFVSELGFALA---PDTEQAIVQNAPLLAHISVERMTMEM 60
Query: 729 NKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTF 788
K+LGG F+ + + L + L +E + L L +W L
Sbjct: 61 EKLLGGPFAARALPLLAETGLNAY--LPGLAGKEKQLRLAAAYRWPWLAAREERWALLCH 118
Query: 789 PMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIW 833
+ R F PN +E + + D +
Sbjct: 119 ALGVQESRPFLRAW-KLPNKVVDEAGAILTALADIPRPEAWTNEQ 162
Score = 37.5 bits (86), Expect = 0.005
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 794 IIR--QFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLK 851
++R +F + + + AI +N L +IS ER+ E+ K+LGG F+ +
Sbjct: 19 MMRAVRFVSELGFALA---PDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPL 75
Query: 852 MLEINMFPHL 861
+ E + +L
Sbjct: 76 LAETGLNAYL 85
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 72.3 bits (177), Expect = 3e-16
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
+ +Y L ++ W+V VYDIT F+ HPGG EI+++ AG +
Sbjct: 3 AVTYYRLEEVAKRNT-AEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADA--TESFE 59
Query: 78 GVHLQDEVFELLESYRIGNISQEDSK 103
+ + E+L+ Y IG++ D K
Sbjct: 60 DIGHSPDAREMLKQYYIGDVHPNDLK 85
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 70.7 bits (173), Expect = 9e-16
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWAM 76
TLP ++L + H W+ VYD+T +V HPG +++ G E +
Sbjct: 1 TLPVFTLEQVAEHHS-PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETK 59
Query: 77 YGVHL-QDEVFELLESYRIGN 96
LL+ Y IG
Sbjct: 60 SYGEPHSSLAARLLQRYLIGT 80
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId:
9913]}
Length = 88
Score = 64.5 bits (157), Expect = 2e-13
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAM 76
+ +Y+L +IQ H + S W++ VYD+T+F++ HPGG E++ + AGG
Sbjct: 2 KAVKYYTLEEIQKHNN-SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDAT--ENF 58
Query: 77 YGVHLQDEVFELLESYRIGNISQEDSK 103
V + EL +++ IG + +D
Sbjct: 59 EDVGHSTDARELSKTFIIGELHPDDRS 85
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 59.9 bits (145), Expect = 1e-11
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWAM 76
S +++ H WVV VYD+T F+ HPGG ++I AG + F
Sbjct: 7 NKQKISPAEVAKHNK-PDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEP- 64
Query: 77 YGVHLQDEVFE-LLESYRIGNISQEDSKLAAKDIASDPY 114
+H + + + + ++G + ++ PY
Sbjct: 65 --LHAPNVIDKYIAPEKKLGPLQGSM----PPELVCPPY 97
>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic
domain {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 249
Score = 55.5 bits (133), Expect = 6e-09
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
DP+ +P R P L+ S KP+NAEPP +L E FLTP+
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPN 38
Score = 53.2 bits (127), Expect = 3e-08
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQ 287
+V +S ES SHWQQNDYKGFSP DWDTVD+ +PAIQ
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQ 249
Score = 47.1 bits (111), Expect = 4e-06
Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 20/198 (10%)
Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQN 264
DP+ +P R P L+ S KP+NAEPP +L F + +H + +
Sbjct: 1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAER-----FLTPNELFFTRNHLPVPAVEPS 55
Query: 265 DYK-----GFSPSTDWDTVDFAKSPAIQELPVISAIC-LPVADAKLKLENHQMEVQGYAW 318
Y+ + + P L A + + V+G W
Sbjct: 56 SYRLRVDGPGGRTLSLSLAEL-----RSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPW 110
Query: 319 SGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMD 378
G + R R V G + H + A P +
Sbjct: 111 DIGAISTARWGGA----RLRDVLLHAGFPEELQGEWHVCFEGLDADPGGAPYGASIPYGR 166
Query: 379 MLMGKKPHDIDFATNATP 396
L + + N T
Sbjct: 167 ALSPAADVLLAYEMNGTE 184
Score = 39.4 bits (91), Expect = 0.001
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 397 DQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARL 456
++++ F + +V + CA E V+PVKGL W A+ A W GARL
Sbjct: 74 AELRSRFPKHEVTATLQ--------CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARL 125
Query: 457 VDVLKAAGISPDQ 469
DVL AG +
Sbjct: 126 RDVLLHAGFPEEL 138
>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic
domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 261
Score = 54.4 bits (130), Expect = 2e-08
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 110 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
Y EP R P LK + +P+NAEPP S LV +++TP
Sbjct: 5 GPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPV 44
Score = 50.1 bits (119), Expect = 4e-07
Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 365 IPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCAR 424
IP+ + S+ + + P + ++++ T CA
Sbjct: 55 IPIVDHLQSYSVTLTGLIQNPRKLFI------KDIRSLPKYNVTATLQ---------CAG 99
Query: 425 MNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIW 484
+V+ V+G+ W +A+GNA W GA+L DVL+ GI + + +HV
Sbjct: 100 NRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSV 159
Query: 485 SKAVDSSYNTQPES 498
+ + + S
Sbjct: 160 DRCKEENGGPYKAS 173
Score = 47.4 bits (112), Expect = 3e-06
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 10/123 (8%)
Query: 203 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL---RIPFCSHTGKVILSDHESTS 259
Y EP R P LK + +P+NAEPP S L SS + + + + G + +
Sbjct: 5 GPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPI--PIVDHLQ 62
Query: 260 HWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWS 319
+ D P + L A + + V+G W
Sbjct: 63 SYSVTLTGLIQNPRKLFIKDIRSLPKY-NVTAT----LQCAGNRRTAMSKVRNVRGVGWD 117
Query: 320 GGG 322
Sbjct: 118 VSA 120
Score = 41.3 bits (96), Expect = 3e-04
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFA-KSPAI 286
+ + ES + Q DYK F PS +WD ++++ + P +
Sbjct: 223 SINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQM 261
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex
aeolicus [TaxId: 63363]}
Length = 215
Score = 52.5 bits (125), Expect = 4e-08
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 12/189 (6%)
Query: 676 RIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGS 735
ED +RILR RF R+ + E++L N L R+ E+ L
Sbjct: 9 SFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNL-GLLKEAPRGRLINEIKLALRED 67
Query: 736 FSKEMMLKMLYQNLL--LFSKLKATTMREYIVELMKY--------KEKSELIKDFHKWRL 785
E++ +L + + + ++ + + + +
Sbjct: 68 RFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLI 127
Query: 786 PTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFS 845
++ + F + + P+ +E K + + E+ ++L +
Sbjct: 128 LISNLDYERGKHFLEEM-SAPSWVRETYKFMKFKLGSLKEELKKAKENYEVYRLLKPLHT 186
Query: 846 KEMMLKMLE 854
++L MLE
Sbjct: 187 SVLLLLMLE 195
Score = 27.1 bits (59), Expect = 8.4
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 794 IIR--QFFARICNNPNNHKEEVLSAIKK--NLDGLHNISGERIWTELNKILGGSFSKEMM 849
I+R +F R+ + +K+ NL L R+ E+ L E++
Sbjct: 17 ILRALRFAGRLNFKLS---RSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEIL 73
Query: 850 LKMLEINMFPHL 861
+ + +
Sbjct: 74 ELYRKYRVLEEI 85
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 152
Score = 49.8 bits (118), Expect = 1e-07
Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 571 KMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTV 609
KMKL SPEF S FT LK L +F K ++LRIAG G V
Sbjct: 2 KMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAG-GAV 39
Score = 43.7 bits (102), Expect = 1e-05
Identities = 33/41 (80%), Positives = 36/41 (87%)
Query: 896 ARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFL 936
ITTLRIDVTTDGRHAEV+FT DW+ DA RRDLT+NSMFL
Sbjct: 93 FEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFL 133
Score = 36.7 bits (84), Expect = 0.004
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVK 437
D+L G KP DIDFAT ATP QMK MF +R N +GEKHGT+ AR++++
Sbjct: 41 DLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRI 100
Score = 31.0 bits (69), Expect = 0.35
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 646 FRLDGTVYDYFNGHEDLKK 664
DGT++DYFNG+EDLK
Sbjct: 133 LGFDGTLFDYFNGYEDLKN 151
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 139
Score = 36.7 bits (84), Expect = 0.003
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVK 437
D+L+G+ D+D AT+A P+ + A+F + G KHGTV K
Sbjct: 31 DLLLGRPIGDVDIATSALPEDVMAIF-----PKTIDVGSKHGTVVVVHKGKAYEVTTFKT 85
Query: 438 GLTWGH 443
+
Sbjct: 86 DGDYED 91
Score = 34.1 bits (77), Expect = 0.026
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 910 RHAEVQFTEDWKLDANRRDLTVNSMFL 936
R V F + D RRD T+N++ +
Sbjct: 94 RPESVTFVRSLEEDLKRRDFTMNAIAM 120
Score = 31.4 bits (70), Expect = 0.24
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 645 SFRLDGTVYDYFNGHEDLKK 664
+ GT+ D F G E +++
Sbjct: 119 AMDEYGTIIDPFGGREAIRR 138
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex
aeolicus [TaxId: 63363]}
Length = 136
Score = 32.9 bits (74), Expect = 0.054
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEE---KVRTFNEKGEKHGTVCARMNDKENFEVK 434
D+L+GK+ D+DF ++ A V F E G H + + +
Sbjct: 22 DILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81
Query: 435 PVKGLTWGHAAVGNATWTGARLVD 458
+ D
Sbjct: 82 TYPRPGAYPKVEPASLKEDLIRRD 105
Score = 28.3 bits (62), Expect = 2.3
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 898 ITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFL 936
T R + K D RRD T+N+M +
Sbjct: 75 FATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAI 113
Score = 27.9 bits (61), Expect = 2.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 649 DGTVYDYFNGHEDLKK 664
GT+ DYF G DLK
Sbjct: 120 YGTLIDYFGGLRDLKD 135
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 30.1 bits (67), Expect = 1.4
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 23/94 (24%)
Query: 790 MNGNIIRQFFARICNNPNNHKEEV-----LSAIKKNLDGLHNISGERIWTELNKILGGSF 844
M G + F + I N + E L+ I+ G +K L G
Sbjct: 2 MRG--LAVFISDIRNCKSKEAEIKRINKELANIRSKFKG-------------DKALDGYS 46
Query: 845 SKEMMLKMLEINMFPHLGTDETFATLDFEGLFRS 878
K+ + K+L I + LG D F ++ L S
Sbjct: 47 KKKYVCKLLFIFL---LGHDIDFGHMEAVNLLSS 77
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase
(6PGD) {Trypanosoma brucei [TaxId: 5691]}
Length = 300
Score = 28.9 bits (64), Expect = 2.5
Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 766 ELMKYKEKS--ELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDG 823
++++ + E+ W+ + N ++ + I K++ S + +++
Sbjct: 26 DILRAMGLNNDEVAAVLEDWK------SKNFLKSYMLDISIAAARAKDKDGSYLTEHVMD 79
Query: 824 LHNISGERIWT 834
G +W+
Sbjct: 80 RIGSKGTGLWS 90
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 28.4 bits (63), Expect = 4.2
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 748 NLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPN 807
L+L +K + + L+++ K ++ + P N + + F + N P
Sbjct: 212 TLILVAK-----SVQNLANLVEFGAKEPYMEGVN----PFIKSNKHRMIMFLDELGNVPE 262
Query: 808 --NHKEEVLSAIKKNLDGLHNI 827
+ E + + ++L LH I
Sbjct: 263 LPDTTEHSRTDLSRDLAALHEI 284
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.1 bits (60), Expect = 4.2
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 18/59 (30%)
Query: 754 KLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARI-CNNPNNHKE 811
K A M V ++ P++ ++Q+F CN KE
Sbjct: 18 KKTAVDMSGGTVTVL-----------------EKVPVSKGQLKQYFYETKCNPMGYTKE 59
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 111
Score = 26.1 bits (57), Expect = 8.7
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 357 GWTLWRATIPVDPKTKEVSIMDMLMGKKPH 386
G T+WR D +++
Sbjct: 4 GITMWRGVTEFDRFLDGKTMIVANDEHWSR 33
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 108
Score = 26.1 bits (57), Expect = 9.4
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 24 SLSDIQNHKDLKSSIWVVFRQGVYDITEFVQM 55
S++DI + +D+ +++ ++ +F Q
Sbjct: 1 SITDILSAEDIAAALQECQDPDTFEPQKFFQT 32
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 26.8 bits (58), Expect = 9.4
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 55 MHPGGEIIMKAAGGSIEPFWAM 76
+ PG + M + G + PF ++
Sbjct: 4 LLPGKHLYMLSTGTGLAPFMSL 25
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 26.6 bits (57), Expect = 9.7
Identities = 15/98 (15%), Positives = 30/98 (30%)
Query: 357 GWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGE 416
G T ++A K E + + G + +A + + +EK+ E G
Sbjct: 13 GVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 72
Query: 417 KHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGA 454
+ + + + K AV + A
Sbjct: 73 DLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,581,757
Number of extensions: 173954
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 49
Length of query: 939
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 845
Effective length of database: 1,116,976
Effective search space: 943844720
Effective search space used: 943844720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)