Query psy11688
Match_columns 546
No_of_seqs 674 out of 5033
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 16:20:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372|consensus 100.0 3.8E-74 8.3E-79 522.7 16.6 282 150-438 8-290 (303)
2 KOG0376|consensus 100.0 2E-69 4.4E-74 541.4 18.3 410 35-444 4-469 (476)
3 KOG0373|consensus 100.0 6.4E-68 1.4E-72 473.9 16.0 284 146-436 7-292 (306)
4 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.5E-66 3.3E-71 518.0 26.8 296 147-442 18-313 (316)
5 cd07420 MPP_RdgC Drosophila me 100.0 8.4E-66 1.8E-70 510.8 26.0 281 148-431 10-321 (321)
6 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.2E-63 2.5E-68 491.6 25.4 273 154-433 11-284 (285)
7 PTZ00480 serine/threonine-prot 100.0 2.3E-63 5E-68 492.4 26.0 269 158-433 32-301 (320)
8 cd07416 MPP_PP2B PP2B, metallo 100.0 3.7E-63 8E-68 493.3 27.1 283 150-440 8-304 (305)
9 PTZ00239 serine/threonine prot 100.0 3.5E-63 7.5E-68 490.4 25.5 276 154-436 12-289 (303)
10 KOG0374|consensus 100.0 4.5E-63 9.8E-68 491.7 21.5 268 158-432 32-302 (331)
11 PTZ00244 serine/threonine-prot 100.0 1.9E-62 4.2E-67 483.8 25.0 269 157-432 24-293 (294)
12 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 5.5E-62 1.2E-66 481.5 25.0 267 158-431 23-290 (293)
13 cd07418 MPP_PP7 PP7, metalloph 100.0 1.3E-61 2.9E-66 486.9 27.0 286 156-441 33-375 (377)
14 smart00156 PP2Ac Protein phosp 100.0 2.8E-61 6E-66 473.5 26.4 267 159-432 2-269 (271)
15 KOG0375|consensus 100.0 2.5E-62 5.4E-67 466.4 14.5 284 152-443 55-352 (517)
16 cd07419 MPP_Bsu1_C Arabidopsis 100.0 2.5E-58 5.4E-63 461.0 25.2 269 157-431 20-310 (311)
17 KOG0371|consensus 100.0 6E-59 1.3E-63 426.1 12.8 290 147-444 22-312 (319)
18 KOG0377|consensus 100.0 1.3E-56 2.7E-61 437.1 13.0 287 145-434 121-433 (631)
19 cd00144 MPP_PPP_family phospho 100.0 3.1E-30 6.6E-35 249.7 20.0 213 192-417 1-224 (225)
20 KOG0372|consensus 99.9 7.1E-29 1.5E-33 226.9 4.0 94 449-544 35-132 (303)
21 KOG0373|consensus 99.9 1.5E-27 3.3E-32 214.5 5.1 86 457-544 46-135 (306)
22 KOG0371|consensus 99.9 5.4E-25 1.2E-29 202.9 3.4 92 450-543 53-148 (319)
23 KOG0374|consensus 99.9 2.3E-24 5E-29 214.9 1.3 94 448-543 50-148 (331)
24 KOG0375|consensus 99.9 5.6E-24 1.2E-28 204.1 2.4 93 450-544 81-177 (517)
25 cd07425 MPP_Shelphs Shewanella 99.9 3.9E-22 8.5E-27 189.4 14.9 176 192-402 1-196 (208)
26 PRK13625 bis(5'-nucleosyl)-tet 99.9 5.2E-21 1.1E-25 186.6 14.4 120 190-312 2-144 (245)
27 KOG0376|consensus 99.8 1.9E-21 4.1E-26 196.3 4.9 284 157-543 14-303 (476)
28 cd07413 MPP_PA3087 Pseudomonas 99.8 7.9E-20 1.7E-24 175.5 14.3 116 191-309 1-142 (222)
29 cd07422 MPP_ApaH Escherichia c 99.8 3E-20 6.5E-25 180.6 10.3 148 191-344 1-159 (257)
30 PRK00166 apaH diadenosine tetr 99.8 8.5E-20 1.8E-24 179.4 13.2 214 191-419 3-259 (275)
31 cd07420 MPP_RdgC Drosophila me 99.8 1.2E-20 2.7E-25 188.0 3.6 84 458-543 52-140 (321)
32 cd07423 MPP_PrpE Bacillus subt 99.8 4.6E-19 1E-23 172.1 14.4 119 190-310 2-140 (234)
33 PRK11439 pphA serine/threonine 99.8 1.4E-19 3E-24 173.6 10.3 123 182-310 10-146 (218)
34 TIGR00668 apaH bis(5'-nucleosy 99.8 1.6E-19 3.4E-24 175.3 10.0 124 191-320 3-132 (279)
35 KOG0553|consensus 99.8 3.8E-19 8.2E-24 170.0 11.6 124 30-153 76-200 (304)
36 cd07424 MPP_PrpA_PrpB PrpA and 99.8 4.7E-19 1E-23 168.9 9.4 168 190-388 2-183 (207)
37 PHA02239 putative protein phos 99.8 9.7E-19 2.1E-23 168.5 11.1 171 191-403 3-219 (235)
38 cd07421 MPP_Rhilphs Rhilph pho 99.8 2.7E-18 5.8E-23 166.5 13.5 197 190-418 3-291 (304)
39 KOG0377|consensus 99.8 4.7E-19 1E-23 174.5 5.6 110 434-544 104-255 (631)
40 PRK09968 serine/threonine-spec 99.7 7.5E-18 1.6E-22 161.3 9.7 123 182-310 8-144 (218)
41 PTZ00480 serine/threonine-prot 99.7 1.2E-18 2.7E-23 173.3 4.4 92 450-543 52-147 (320)
42 PTZ00244 serine/threonine-prot 99.7 1.4E-18 3.1E-23 172.0 4.4 93 449-543 44-140 (294)
43 cd07417 MPP_PP5_C PP5, C-termi 99.7 4.7E-18 1E-22 170.1 7.1 83 459-543 62-149 (316)
44 cd07416 MPP_PP2B PP2B, metallo 99.7 1.9E-18 4E-23 172.7 3.9 92 450-543 36-131 (305)
45 PTZ00239 serine/threonine prot 99.7 2.1E-18 4.5E-23 171.4 3.6 92 450-543 36-131 (303)
46 cd07415 MPP_PP2A_PP4_PP6 PP2A, 99.7 2.4E-18 5.2E-23 170.1 3.7 92 450-543 35-130 (285)
47 cd07414 MPP_PP1_PPKL PP1, PPKL 99.7 2.9E-18 6.2E-23 170.2 3.7 92 450-543 43-138 (293)
48 smart00156 PP2Ac Protein phosp 99.7 1.2E-17 2.5E-22 164.6 3.8 91 451-543 22-116 (271)
49 cd07418 MPP_PP7 PP7, metalloph 99.7 1.4E-17 3E-22 168.5 3.9 85 457-543 66-155 (377)
50 cd07419 MPP_Bsu1_C Arabidopsis 99.7 3.9E-17 8.5E-22 163.9 3.4 89 454-544 45-145 (311)
51 KOG4626|consensus 99.6 1.8E-16 3.9E-21 162.9 7.6 184 28-211 245-452 (966)
52 KOG1126|consensus 99.6 5.5E-16 1.2E-20 161.6 5.3 207 26-245 412-620 (638)
53 PRK15359 type III secretion sy 99.6 1.3E-14 2.9E-19 129.9 12.8 119 29-150 21-140 (144)
54 KOG0548|consensus 99.6 2E-14 4.4E-19 146.8 11.8 120 30-149 353-473 (539)
55 KOG4626|consensus 99.5 6.2E-14 1.3E-18 144.4 13.0 187 29-215 280-490 (966)
56 KOG4234|consensus 99.5 5.2E-13 1.1E-17 120.3 13.8 119 32-150 92-216 (271)
57 PLN03088 SGT1, suppressor of 99.5 2.9E-13 6.3E-18 139.5 13.6 115 36-150 3-118 (356)
58 TIGR00990 3a0801s09 mitochondr 99.5 4.7E-13 1E-17 148.7 14.5 102 32-133 124-225 (615)
59 KOG0543|consensus 99.5 4.6E-13 9.9E-18 133.6 12.8 125 29-153 202-342 (397)
60 TIGR00990 3a0801s09 mitochondr 99.5 7.2E-13 1.6E-17 147.2 15.3 170 31-211 327-497 (615)
61 KOG0548|consensus 99.4 2.8E-13 6.1E-18 138.5 10.4 112 35-146 2-114 (539)
62 PRK11189 lipoprotein NlpI; Pro 99.4 1.1E-12 2.4E-17 132.0 14.7 106 32-137 61-167 (296)
63 KOG0624|consensus 99.4 1.2E-13 2.7E-18 133.6 7.2 183 29-211 32-219 (504)
64 TIGR02552 LcrH_SycD type III s 99.4 1.2E-12 2.6E-17 115.7 12.6 114 27-140 9-123 (135)
65 PRK15363 pathogenicity island 99.4 1.6E-12 3.5E-17 115.1 13.1 105 29-133 28-134 (157)
66 KOG0547|consensus 99.4 2.2E-12 4.7E-17 130.3 14.2 98 29-126 109-207 (606)
67 TIGR02521 type_IV_pilW type IV 99.4 1.9E-12 4E-17 123.9 13.2 169 31-210 27-198 (234)
68 KOG0550|consensus 99.4 7.1E-13 1.5E-17 131.4 10.1 124 28-152 242-370 (486)
69 COG3063 PilF Tfp pilus assembl 99.4 2.6E-12 5.7E-17 118.8 12.6 124 29-152 29-155 (250)
70 KOG4648|consensus 99.4 7.2E-13 1.6E-17 128.2 8.3 115 33-147 95-210 (536)
71 KOG1155|consensus 99.4 3.2E-12 6.9E-17 128.4 11.3 154 38-209 333-487 (559)
72 PRK10370 formate-dependent nit 99.4 6.4E-12 1.4E-16 118.6 12.4 111 28-138 66-180 (198)
73 PRK12370 invasion protein regu 99.4 2.9E-12 6.3E-17 140.2 11.5 118 29-146 289-416 (553)
74 PRK09782 bacteriophage N4 rece 99.3 2.3E-11 5.1E-16 139.2 14.4 137 39-186 580-716 (987)
75 KOG1126|consensus 99.3 3.5E-12 7.5E-17 133.6 6.6 162 29-208 449-611 (638)
76 KOG1155|consensus 99.3 3.6E-11 7.8E-16 120.9 13.3 128 28-155 357-485 (559)
77 KOG0547|consensus 99.3 2.3E-11 5E-16 123.0 11.8 148 26-184 317-465 (606)
78 PRK12370 invasion protein regu 99.3 2.7E-11 5.8E-16 132.6 13.3 125 28-152 331-457 (553)
79 TIGR03302 OM_YfiO outer membra 99.3 2.9E-11 6.4E-16 117.5 12.1 129 8-140 10-153 (235)
80 PRK15359 type III secretion sy 99.3 3.5E-11 7.7E-16 107.7 10.9 96 55-152 13-108 (144)
81 PRK15174 Vi polysaccharide exp 99.2 4.9E-11 1.1E-15 132.9 12.7 115 28-142 69-184 (656)
82 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.9E-10 4E-15 98.7 13.1 105 35-139 2-113 (119)
83 PF13414 TPR_11: TPR repeat; P 99.2 6.5E-11 1.4E-15 91.6 8.0 66 68-133 3-69 (69)
84 PRK11447 cellulose synthase su 99.2 7.7E-11 1.7E-15 139.7 12.6 209 29-240 297-552 (1157)
85 PRK15179 Vi polysaccharide bio 99.2 1.7E-10 3.8E-15 127.3 14.4 124 31-154 82-206 (694)
86 PRK02603 photosystem I assembl 99.2 3.7E-10 8E-15 104.4 13.9 108 28-135 28-153 (172)
87 PRK15174 Vi polysaccharide exp 99.2 1.8E-10 3.8E-15 128.4 13.8 162 39-211 216-382 (656)
88 TIGR02521 type_IV_pilW type IV 99.2 4.4E-10 9.4E-15 107.4 14.4 124 29-152 59-185 (234)
89 PRK09782 bacteriophage N4 rece 99.2 4E-10 8.6E-15 129.2 16.0 121 29-150 604-725 (987)
90 PF13414 TPR_11: TPR repeat; P 99.2 1.1E-10 2.4E-15 90.3 8.0 66 34-99 2-69 (69)
91 PRK11447 cellulose synthase su 99.1 2.8E-10 6E-15 135.0 14.3 117 29-145 379-538 (1157)
92 PRK10370 formate-dependent nit 99.1 5.3E-10 1.1E-14 105.6 13.3 105 48-152 52-160 (198)
93 KOG0545|consensus 99.1 5E-10 1.1E-14 104.2 12.2 133 6-138 149-300 (329)
94 cd00189 TPR Tetratricopeptide 99.1 7.1E-10 1.5E-14 89.3 12.0 98 37-134 2-100 (100)
95 PRK13625 bis(5'-nucleosyl)-tet 99.1 4.1E-11 8.8E-16 117.0 5.3 72 460-535 4-84 (245)
96 PLN02789 farnesyltranstransfer 99.1 8.1E-10 1.8E-14 111.6 14.2 122 28-149 64-189 (320)
97 TIGR02917 PEP_TPR_lipo putativ 99.1 6.4E-10 1.4E-14 127.9 15.2 125 29-153 119-244 (899)
98 TIGR02917 PEP_TPR_lipo putativ 99.1 4E-10 8.8E-15 129.6 13.2 196 32-241 700-895 (899)
99 KOG2003|consensus 99.1 2.4E-10 5.2E-15 114.4 9.6 183 28-210 483-689 (840)
100 PRK11788 tetratricopeptide rep 99.1 6.8E-10 1.5E-14 116.2 13.7 201 35-249 107-314 (389)
101 PF12895 Apc3: Anaphase-promot 99.1 2.4E-10 5.2E-15 92.3 7.0 81 47-128 1-84 (84)
102 PRK11189 lipoprotein NlpI; Pro 99.1 9.3E-10 2E-14 110.9 12.5 104 49-152 40-148 (296)
103 KOG1125|consensus 99.1 1.5E-09 3.2E-14 112.5 13.9 174 29-213 313-530 (579)
104 KOG4642|consensus 99.1 2.8E-10 6.1E-15 105.6 7.8 100 33-132 8-108 (284)
105 cd07421 MPP_Rhilphs Rhilph pho 99.1 1.3E-10 2.8E-15 113.3 5.8 65 461-527 6-77 (304)
106 PRK15331 chaperone protein Sic 99.1 1.1E-09 2.4E-14 97.5 11.2 110 27-137 29-139 (165)
107 cd07413 MPP_PA3087 Pseudomonas 99.1 1.6E-10 3.5E-15 111.0 6.3 63 461-527 3-73 (222)
108 CHL00033 ycf3 photosystem I as 99.1 2.9E-09 6.3E-14 98.0 14.2 108 29-136 29-154 (168)
109 TIGR02552 LcrH_SycD type III s 99.1 1.1E-09 2.4E-14 96.7 10.6 97 56-152 4-101 (135)
110 KOG0551|consensus 99.1 2E-09 4.3E-14 104.5 13.0 107 32-138 78-189 (390)
111 PLN02789 farnesyltranstransfer 99.0 1.9E-09 4.2E-14 109.0 13.2 141 30-181 32-176 (320)
112 COG3063 PilF Tfp pilus assembl 99.0 1E-09 2.2E-14 101.8 9.7 125 28-152 62-189 (250)
113 PRK10049 pgaA outer membrane p 99.0 2.5E-09 5.5E-14 121.5 14.5 116 31-147 45-161 (765)
114 COG5010 TadD Flp pilus assembl 99.0 1.9E-09 4.1E-14 102.1 10.3 132 23-154 88-220 (257)
115 PRK11788 tetratricopeptide rep 99.0 2.2E-09 4.7E-14 112.4 11.8 118 35-152 35-157 (389)
116 cd00144 MPP_PPP_family phospho 99.0 4.7E-10 1E-14 108.3 6.2 63 462-527 3-65 (225)
117 PRK15363 pathogenicity island 99.0 1.5E-09 3.2E-14 96.3 8.7 86 68-153 35-120 (157)
118 PF13432 TPR_16: Tetratricopep 99.0 1.2E-09 2.6E-14 83.4 6.8 64 73-136 2-65 (65)
119 PF13429 TPR_15: Tetratricopep 99.0 9.4E-10 2E-14 110.0 7.8 122 33-154 144-266 (280)
120 KOG0624|consensus 99.0 2E-08 4.4E-13 97.8 15.8 153 34-186 154-308 (504)
121 PRK10803 tol-pal system protei 98.9 1E-08 2.2E-13 100.8 13.5 105 35-139 142-254 (263)
122 TIGR03302 OM_YfiO outer membra 98.9 1.2E-08 2.6E-13 99.2 14.0 122 32-153 67-220 (235)
123 PF00149 Metallophos: Calcineu 98.9 7.5E-09 1.6E-13 94.2 11.5 158 190-383 2-198 (200)
124 KOG2076|consensus 98.9 2.7E-08 5.8E-13 107.8 16.0 121 33-153 137-258 (895)
125 PRK10866 outer membrane biogen 98.9 2.4E-08 5.1E-13 97.3 14.1 149 34-182 31-210 (243)
126 KOG1125|consensus 98.9 2.8E-08 6.1E-13 103.1 14.6 213 39-258 289-504 (579)
127 KOG0550|consensus 98.9 2.1E-09 4.5E-14 107.1 6.0 146 8-153 176-338 (486)
128 cd07423 MPP_PrpE Bacillus subt 98.9 2.1E-09 4.7E-14 104.3 6.1 64 460-527 4-77 (234)
129 PF13432 TPR_16: Tetratricopep 98.9 9.4E-09 2E-13 78.4 8.3 64 39-102 1-65 (65)
130 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 9.8E-09 2.1E-13 105.3 10.7 79 20-98 60-142 (453)
131 cd07422 MPP_ApaH Escherichia c 98.9 2.3E-09 5.1E-14 104.5 5.8 67 462-534 4-75 (257)
132 KOG2002|consensus 98.8 1.2E-08 2.6E-13 111.2 9.9 197 28-226 157-385 (1018)
133 COG4235 Cytochrome c biogenesi 98.8 2.9E-08 6.3E-13 96.4 11.5 111 29-139 150-264 (287)
134 PF13512 TPR_18: Tetratricopep 98.8 6.1E-08 1.3E-12 84.6 12.3 105 35-139 10-136 (142)
135 PF13525 YfiO: Outer membrane 98.8 9.3E-08 2E-12 90.8 14.6 149 34-182 4-176 (203)
136 PRK15179 Vi polysaccharide bio 98.8 2.6E-08 5.6E-13 110.3 12.3 109 28-136 113-222 (694)
137 PRK14574 hmsH outer membrane p 98.8 2.9E-08 6.4E-13 111.8 12.9 135 34-179 33-168 (822)
138 KOG2002|consensus 98.8 2.4E-08 5.1E-13 108.9 10.9 121 29-149 264-389 (1018)
139 COG0639 ApaH Diadenosine tetra 98.8 6E-09 1.3E-13 93.3 5.3 142 263-406 3-154 (155)
140 TIGR00668 apaH bis(5'-nucleosy 98.8 6.9E-09 1.5E-13 101.4 5.5 68 461-534 5-77 (279)
141 KOG0553|consensus 98.8 2E-08 4.2E-13 97.0 8.5 103 68-181 81-183 (304)
142 KOG1173|consensus 98.8 1.3E-08 2.8E-13 105.2 7.5 118 28-145 407-532 (611)
143 PF13429 TPR_15: Tetratricopep 98.8 2.4E-08 5.2E-13 99.8 9.2 199 28-240 71-271 (280)
144 PRK10049 pgaA outer membrane p 98.8 5.7E-08 1.2E-12 110.6 13.3 111 42-152 279-409 (765)
145 KOG4555|consensus 98.8 1.4E-07 3E-12 79.8 12.0 103 32-134 40-147 (175)
146 PRK11439 pphA serine/threonine 98.8 8.3E-09 1.8E-13 99.0 5.3 60 460-527 20-80 (218)
147 COG4783 Putative Zn-dependent 98.7 1.5E-07 3.2E-12 96.3 14.1 122 32-153 303-425 (484)
148 cd07425 MPP_Shelphs Shewanella 98.7 1.4E-08 3.1E-13 96.5 6.5 64 462-527 3-77 (208)
149 KOG1129|consensus 98.7 3E-07 6.6E-12 89.3 15.2 118 35-152 223-340 (478)
150 COG5010 TadD Flp pilus assembl 98.7 1.1E-07 2.3E-12 90.3 11.7 123 29-152 61-184 (257)
151 PHA02239 putative protein phos 98.7 1.6E-08 3.4E-13 97.8 6.2 64 461-527 5-70 (235)
152 PRK14720 transcript cleavage f 98.7 6.1E-08 1.3E-12 108.3 11.7 132 20-154 16-167 (906)
153 KOG1173|consensus 98.7 1E-07 2.2E-12 98.6 12.4 180 28-211 305-485 (611)
154 PF13371 TPR_9: Tetratricopept 98.7 2.9E-08 6.3E-13 77.5 6.3 65 75-139 2-66 (73)
155 KOG4162|consensus 98.7 1E-07 2.2E-12 101.9 12.0 104 33-136 682-788 (799)
156 PRK00166 apaH diadenosine tetr 98.7 1.8E-08 4E-13 99.4 5.9 68 461-534 5-77 (275)
157 PF12688 TPR_5: Tetratrico pep 98.7 3.7E-07 8E-12 78.4 12.7 95 36-130 2-103 (120)
158 CHL00033 ycf3 photosystem I as 98.7 1.4E-07 3.1E-12 86.7 10.6 111 42-152 6-122 (168)
159 PRK10747 putative protoheme IX 98.7 4.4E-07 9.5E-12 95.4 15.2 216 31-251 80-328 (398)
160 PF14559 TPR_19: Tetratricopep 98.7 3.6E-08 7.8E-13 75.8 5.2 62 79-140 2-63 (68)
161 PF09976 TPR_21: Tetratricopep 98.7 3.5E-07 7.7E-12 81.9 12.3 95 34-129 47-145 (145)
162 cd00841 MPP_YfcE Escherichia c 98.6 5.2E-07 1.1E-11 81.7 13.3 81 191-309 2-85 (155)
163 COG1729 Uncharacterized protei 98.6 3.3E-07 7.2E-12 88.1 12.1 106 35-140 141-253 (262)
164 COG2956 Predicted N-acetylgluc 98.6 3.5E-07 7.5E-12 88.9 12.1 118 36-153 142-266 (389)
165 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.3E-07 2.8E-12 97.2 9.1 68 64-131 70-141 (453)
166 COG4785 NlpI Lipoprotein NlpI, 98.6 1.2E-07 2.6E-12 87.1 7.9 109 30-138 60-169 (297)
167 cd00189 TPR Tetratricopeptide 98.6 3.7E-07 7.9E-12 73.1 10.1 83 70-152 2-84 (100)
168 PRK02603 photosystem I assembl 98.6 3.6E-07 7.8E-12 84.4 11.2 85 68-152 35-122 (172)
169 PF14559 TPR_19: Tetratricopep 98.6 1.4E-07 3E-12 72.5 7.1 67 45-111 1-68 (68)
170 KOG2003|consensus 98.6 3.8E-08 8.2E-13 98.9 4.6 102 51-152 472-574 (840)
171 PF13371 TPR_9: Tetratricopept 98.6 3E-07 6.5E-12 71.7 8.6 69 42-110 2-71 (73)
172 KOG1128|consensus 98.6 3.3E-07 7.2E-12 97.5 11.4 117 37-153 487-604 (777)
173 KOG1840|consensus 98.6 3.6E-07 7.9E-12 96.9 11.1 177 27-211 191-397 (508)
174 PLN03088 SGT1, suppressor of 98.6 3E-07 6.4E-12 95.0 10.1 82 71-152 5-86 (356)
175 TIGR00540 hemY_coli hemY prote 98.5 2.2E-06 4.8E-11 90.5 16.6 124 31-154 80-205 (409)
176 PRK09968 serine/threonine-spec 98.5 9.5E-08 2.1E-12 91.6 5.6 61 459-527 17-78 (218)
177 KOG3060|consensus 98.5 1.3E-06 2.8E-11 82.4 12.6 122 30-151 81-203 (289)
178 COG4783 Putative Zn-dependent 98.5 5.5E-07 1.2E-11 92.2 10.8 111 29-139 334-445 (484)
179 KOG1308|consensus 98.5 3.9E-08 8.5E-13 96.2 2.3 109 26-134 105-214 (377)
180 TIGR00040 yfcE phosphoesterase 98.5 3.4E-06 7.3E-11 76.7 14.8 63 190-261 2-64 (158)
181 COG2956 Predicted N-acetylgluc 98.5 7.6E-07 1.7E-11 86.6 10.4 177 27-210 61-243 (389)
182 KOG1174|consensus 98.5 4.5E-07 9.7E-12 90.6 8.7 202 34-250 299-504 (564)
183 KOG2076|consensus 98.5 2.1E-06 4.5E-11 93.5 14.3 105 29-133 167-272 (895)
184 TIGR02795 tol_pal_ybgF tol-pal 98.5 9.6E-07 2.1E-11 75.4 9.7 85 68-152 2-92 (119)
185 PF12850 Metallophos_2: Calcin 98.5 1.7E-06 3.6E-11 78.2 11.7 150 190-418 2-151 (156)
186 PRK10153 DNA-binding transcrip 98.5 3.9E-06 8.4E-11 90.5 15.9 158 34-209 338-509 (517)
187 PF06552 TOM20_plant: Plant sp 98.4 1.1E-06 2.3E-11 79.3 9.4 95 51-145 7-123 (186)
188 KOG4162|consensus 98.4 4.2E-06 9.2E-11 89.8 15.1 138 35-180 650-790 (799)
189 PRK10747 putative protoheme IX 98.4 2.6E-06 5.7E-11 89.5 13.4 206 38-250 121-361 (398)
190 PRK11906 transcriptional regul 98.4 2.4E-06 5.1E-11 88.1 12.4 108 29-136 289-406 (458)
191 PRK11906 transcriptional regul 98.4 3.1E-06 6.8E-11 87.2 13.1 132 37-179 257-404 (458)
192 KOG1840|consensus 98.4 2.2E-06 4.8E-11 91.0 12.4 138 29-174 277-439 (508)
193 KOG1156|consensus 98.4 1.2E-06 2.5E-11 92.3 10.0 120 34-153 6-126 (700)
194 cd05804 StaR_like StaR_like; a 98.4 1.9E-06 4.1E-11 89.0 11.5 106 29-134 108-218 (355)
195 cd05804 StaR_like StaR_like; a 98.4 1.8E-06 3.8E-11 89.2 11.2 118 34-152 42-164 (355)
196 KOG0543|consensus 98.4 2.9E-06 6.4E-11 85.4 12.2 99 36-134 258-358 (397)
197 PRK14574 hmsH outer membrane p 98.4 1.6E-06 3.4E-11 98.0 11.5 107 37-144 104-211 (822)
198 KOG3060|consensus 98.4 5.8E-06 1.3E-10 78.1 13.2 125 28-152 113-241 (289)
199 KOG1128|consensus 98.4 4.1E-06 8.9E-11 89.4 13.2 167 33-210 422-616 (777)
200 cd07424 MPP_PrpA_PrpB PrpA and 98.4 5.2E-07 1.1E-11 86.0 5.9 59 461-527 5-64 (207)
201 PF13424 TPR_12: Tetratricopep 98.4 8.6E-07 1.9E-11 70.2 6.2 66 32-97 2-75 (78)
202 PRK10153 DNA-binding transcrip 98.4 3.4E-06 7.3E-11 90.9 12.3 110 28-138 369-489 (517)
203 PF09976 TPR_21: Tetratricopep 98.3 1.6E-05 3.5E-10 71.1 14.7 121 31-152 7-134 (145)
204 PF13424 TPR_12: Tetratricopep 98.3 4.1E-06 8.9E-11 66.2 9.6 64 68-131 5-75 (78)
205 COG4105 ComL DNA uptake lipopr 98.3 6E-06 1.3E-10 78.8 12.3 148 34-181 33-201 (254)
206 cd07379 MPP_239FB Homo sapiens 98.3 3.5E-06 7.5E-11 74.5 10.0 117 191-389 2-120 (135)
207 KOG1156|consensus 98.3 7.3E-07 1.6E-11 93.8 6.2 126 28-153 34-160 (700)
208 PRK09453 phosphodiesterase; Pr 98.3 1.6E-06 3.4E-11 80.9 7.5 68 190-262 2-77 (182)
209 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.8E-06 1.3E-10 85.5 12.0 105 48-154 182-286 (395)
210 KOG1129|consensus 98.3 2.1E-06 4.6E-11 83.6 8.0 209 31-249 252-461 (478)
211 PF12895 Apc3: Anaphase-promot 98.3 9.4E-07 2E-11 71.1 4.7 72 81-153 2-75 (84)
212 TIGR00540 hemY_coli hemY prote 98.3 7.7E-06 1.7E-10 86.4 12.4 122 31-153 259-387 (409)
213 KOG1174|consensus 98.3 4.5E-06 9.7E-11 83.7 9.7 125 29-153 226-385 (564)
214 COG4235 Cytochrome c biogenesi 98.2 1.3E-05 2.9E-10 78.1 12.4 104 50-153 137-244 (287)
215 PRK15331 chaperone protein Sic 98.2 9.1E-06 2E-10 72.7 10.2 86 68-153 37-122 (165)
216 cd07397 MPP_DevT Myxococcus xa 98.2 8.5E-06 1.8E-10 78.3 10.3 109 190-309 2-157 (238)
217 PRK14720 transcript cleavage f 98.1 3.2E-05 6.8E-10 87.0 14.3 102 28-132 58-179 (906)
218 cd07394 MPP_Vps29 Homo sapiens 98.1 9.2E-05 2E-09 68.6 14.6 108 191-385 2-118 (178)
219 KOG0495|consensus 98.1 3.4E-05 7.4E-10 81.5 12.6 124 29-152 612-735 (913)
220 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.1E-05 1.3E-09 78.0 14.5 96 36-131 201-297 (395)
221 cd07388 MPP_Tt1561 Thermus the 98.1 7.4E-05 1.6E-09 71.5 13.8 71 189-261 5-75 (224)
222 PRK10803 tol-pal system protei 98.1 2.2E-05 4.7E-10 77.3 10.4 85 68-152 142-233 (263)
223 PF12688 TPR_5: Tetratrico pep 98.0 4.1E-05 8.8E-10 65.8 9.9 85 69-153 2-92 (120)
224 PRK05340 UDP-2,3-diacylglucosa 98.0 3.1E-05 6.8E-10 75.6 10.1 209 191-430 3-238 (241)
225 PF13431 TPR_17: Tetratricopep 98.0 7.5E-06 1.6E-10 53.5 3.7 33 91-123 2-34 (34)
226 KOG1127|consensus 98.0 1.7E-05 3.7E-10 87.1 8.5 121 33-153 524-647 (1238)
227 cd00838 MPP_superfamily metall 98.0 5.9E-05 1.3E-09 65.1 10.5 117 193-390 2-120 (131)
228 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.4E-10 55.4 5.1 42 69-110 2-43 (44)
229 KOG1310|consensus 98.0 2.8E-05 6E-10 80.2 8.8 110 29-138 368-481 (758)
230 PRK10866 outer membrane biogen 97.9 9.4E-05 2E-09 72.1 11.9 115 67-181 31-158 (243)
231 PF13525 YfiO: Outer membrane 97.9 0.00012 2.5E-09 69.5 12.1 116 68-183 5-126 (203)
232 KOG4648|consensus 97.9 8.6E-06 1.9E-10 79.8 4.3 102 71-183 100-201 (536)
233 PF00515 TPR_1: Tetratricopept 97.9 2.1E-05 4.5E-10 51.3 4.8 32 69-100 2-33 (34)
234 KOG1127|consensus 97.9 2.7E-05 5.9E-10 85.6 8.3 116 34-149 561-677 (1238)
235 cd07404 MPP_MS158 Microscilla 97.9 4.5E-05 9.8E-10 69.8 8.7 68 191-261 1-68 (166)
236 PF06552 TOM20_plant: Plant sp 97.9 7.6E-05 1.6E-09 67.5 9.4 77 29-105 19-117 (186)
237 PF00515 TPR_1: Tetratricopept 97.8 2.3E-05 4.9E-10 51.1 3.9 34 102-135 1-34 (34)
238 PF13512 TPR_18: Tetratricopep 97.8 0.00028 6.1E-09 61.8 11.6 71 68-138 10-83 (142)
239 cd07399 MPP_YvnB Bacillus subt 97.8 0.00078 1.7E-08 64.4 15.8 193 191-432 3-213 (214)
240 KOG3785|consensus 97.8 0.00013 2.9E-09 72.0 10.3 119 33-153 57-202 (557)
241 KOG3785|consensus 97.8 0.00016 3.4E-09 71.5 10.7 166 43-212 30-216 (557)
242 KOG4234|consensus 97.8 0.00018 3.9E-09 65.8 10.3 73 32-104 131-204 (271)
243 PF13428 TPR_14: Tetratricopep 97.8 2.1E-05 4.5E-10 54.8 3.4 44 102-145 1-44 (44)
244 TIGR01854 lipid_A_lpxH UDP-2,3 97.8 0.00014 3.1E-09 70.4 10.3 200 192-418 2-226 (231)
245 PLN03081 pentatricopeptide (PP 97.8 0.00025 5.4E-09 80.3 13.5 195 36-243 291-488 (697)
246 KOG1130|consensus 97.8 4.2E-05 9E-10 76.8 6.2 118 35-152 17-151 (639)
247 COG4785 NlpI Lipoprotein NlpI, 97.8 6.8E-05 1.5E-09 69.4 6.9 78 26-103 90-168 (297)
248 PF14938 SNAP: Soluble NSF att 97.7 0.00022 4.7E-09 71.3 11.2 99 32-131 32-144 (282)
249 PF07719 TPR_2: Tetratricopept 97.7 8.8E-05 1.9E-09 48.2 5.0 31 70-100 3-33 (34)
250 PF07719 TPR_2: Tetratricopept 97.7 6.5E-05 1.4E-09 48.8 4.3 34 102-135 1-34 (34)
251 PF12569 NARP1: NMDA receptor- 97.6 0.0021 4.6E-08 69.2 17.5 98 35-132 194-292 (517)
252 cd07392 MPP_PAE1087 Pyrobaculu 97.6 0.00062 1.3E-08 63.3 11.9 65 191-262 1-66 (188)
253 cd07403 MPP_TTHA0053 Thermus t 97.6 0.00046 1E-08 60.3 10.2 106 193-389 2-107 (129)
254 PF08321 PPP5: PPP5 TPR repeat 97.6 5.3E-05 1.2E-09 61.8 3.9 53 434-486 39-91 (95)
255 PF12569 NARP1: NMDA receptor- 97.6 0.00014 3E-09 78.2 8.2 84 69-152 195-278 (517)
256 KOG4642|consensus 97.6 6E-05 1.3E-09 70.7 4.6 100 71-178 13-112 (284)
257 PF13431 TPR_17: Tetratricopep 97.6 6.2E-05 1.3E-09 49.2 3.1 33 57-89 1-34 (34)
258 cd07400 MPP_YydB Bacillus subt 97.5 0.0013 2.8E-08 58.5 12.1 94 216-390 35-130 (144)
259 KOG4555|consensus 97.5 0.00049 1.1E-08 58.7 8.4 82 71-152 46-131 (175)
260 COG4700 Uncharacterized protei 97.5 0.0016 3.4E-08 59.2 12.0 113 37-150 91-207 (251)
261 PF14938 SNAP: Soluble NSF att 97.5 0.00056 1.2E-08 68.4 10.4 105 33-137 112-231 (282)
262 PF04733 Coatomer_E: Coatomer 97.5 0.00079 1.7E-08 67.4 11.2 117 35-152 131-251 (290)
263 PLN03081 pentatricopeptide (PP 97.5 0.0051 1.1E-07 69.7 19.0 91 36-127 392-487 (697)
264 PF03704 BTAD: Bacterial trans 97.5 0.0024 5.2E-08 57.0 13.0 98 33-130 4-124 (146)
265 KOG0495|consensus 97.5 0.0019 4.1E-08 68.8 13.5 112 41-152 657-769 (913)
266 PF12968 DUF3856: Domain of Un 97.4 0.0039 8.4E-08 52.3 12.4 93 39-131 13-129 (144)
267 COG3071 HemY Uncharacterized e 97.4 0.0027 5.9E-08 64.0 13.7 183 30-212 79-294 (400)
268 KOG1941|consensus 97.4 0.00053 1.2E-08 68.1 8.0 176 30-211 78-269 (518)
269 PLN03218 maturation of RBCL 1; 97.4 0.002 4.2E-08 75.4 13.9 97 35-132 507-609 (1060)
270 COG0622 Predicted phosphoester 97.4 0.0043 9.2E-08 56.9 13.2 158 190-432 3-165 (172)
271 PLN03077 Protein ECB2; Provisi 97.4 0.0062 1.3E-07 70.8 17.7 99 34-134 553-656 (857)
272 PLN03218 maturation of RBCL 1; 97.3 0.0025 5.5E-08 74.5 13.6 95 35-130 472-570 (1060)
273 COG1729 Uncharacterized protei 97.3 0.0015 3.3E-08 63.2 9.5 98 71-179 144-247 (262)
274 PF06874 FBPase_2: Firmicute f 97.2 0.0024 5.3E-08 68.2 11.5 62 361-423 507-578 (640)
275 PF13181 TPR_8: Tetratricopept 97.2 0.00052 1.1E-08 44.5 4.2 30 70-99 3-32 (34)
276 KOG2796|consensus 97.2 0.0014 3.1E-08 62.5 8.2 100 35-134 212-318 (366)
277 PF04733 Coatomer_E: Coatomer 97.2 0.0013 2.7E-08 66.0 8.3 89 50-138 182-272 (290)
278 COG4700 Uncharacterized protei 97.2 0.0084 1.8E-07 54.5 12.5 113 41-153 62-177 (251)
279 PF13181 TPR_8: Tetratricopept 97.1 0.00054 1.2E-08 44.4 3.5 33 103-135 2-34 (34)
280 cd07395 MPP_CSTP1 Homo sapiens 97.1 0.014 3E-07 57.6 15.1 57 362-420 195-252 (262)
281 KOG2796|consensus 97.1 0.0091 2E-07 57.2 12.6 116 37-152 179-302 (366)
282 KOG1130|consensus 97.1 0.0018 3.9E-08 65.4 8.2 126 29-154 189-333 (639)
283 KOG2376|consensus 97.1 0.0043 9.3E-08 65.5 11.3 103 36-138 111-260 (652)
284 KOG2376|consensus 97.1 0.0061 1.3E-07 64.4 12.1 115 36-154 13-128 (652)
285 PRK11340 phosphodiesterase Yae 97.0 0.00088 1.9E-08 66.6 5.5 70 189-261 50-125 (271)
286 KOG3824|consensus 97.0 0.0046 1E-07 60.3 10.0 86 68-153 116-201 (472)
287 COG0457 NrfG FOG: TPR repeat [ 97.0 0.017 3.7E-07 53.2 13.8 117 31-147 91-213 (291)
288 KOG2471|consensus 97.0 0.00055 1.2E-08 70.3 3.6 117 33-149 238-382 (696)
289 PLN03077 Protein ECB2; Provisi 97.0 0.0034 7.3E-08 72.9 10.7 51 194-244 602-652 (857)
290 KOG0546|consensus 97.0 0.0007 1.5E-08 67.3 4.2 120 33-152 220-359 (372)
291 cd07383 MPP_Dcr2 Saccharomyces 97.0 0.019 4.2E-07 54.1 13.8 44 216-259 41-87 (199)
292 COG3071 HemY Uncharacterized e 97.0 0.012 2.6E-07 59.5 12.6 115 35-152 263-377 (400)
293 KOG4340|consensus 96.9 0.0065 1.4E-07 59.1 9.9 85 45-129 20-105 (459)
294 PF04184 ST7: ST7 protein; In 96.9 0.0041 9E-08 64.7 9.1 110 42-153 175-312 (539)
295 PRK10941 hypothetical protein; 96.9 0.0036 7.8E-08 61.7 8.2 73 68-140 181-253 (269)
296 PF10300 DUF3808: Protein of u 96.9 0.0051 1.1E-07 65.9 10.0 101 30-131 262-376 (468)
297 PF05843 Suf: Suppressor of fo 96.8 0.013 2.9E-07 58.4 12.2 100 37-136 3-104 (280)
298 KOG4340|consensus 96.8 0.011 2.5E-07 57.4 10.7 125 29-153 38-195 (459)
299 COG3118 Thioredoxin domain-con 96.8 0.023 4.9E-07 55.7 12.7 98 36-133 135-267 (304)
300 COG0457 NrfG FOG: TPR repeat [ 96.8 0.037 8E-07 51.0 14.3 100 35-134 59-162 (291)
301 KOG2053|consensus 96.7 0.0091 2E-07 65.9 10.6 107 45-152 19-126 (932)
302 cd07385 MPP_YkuE_C Bacillus su 96.7 0.002 4.4E-08 61.8 5.2 70 190-262 3-77 (223)
303 PF00149 Metallophos: Calcineu 96.7 0.0028 6E-08 57.0 5.7 67 461-527 5-75 (200)
304 COG2976 Uncharacterized protei 96.7 0.018 3.8E-07 53.0 10.5 99 35-135 89-192 (207)
305 KOG4507|consensus 96.7 0.0018 3.9E-08 68.0 4.4 99 42-140 614-714 (886)
306 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0024 5.1E-08 46.1 3.7 36 70-105 3-38 (53)
307 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.0092 2E-07 43.1 6.6 47 103-149 2-48 (53)
308 PF15015 NYD-SP12_N: Spermatog 96.6 0.03 6.6E-07 57.0 12.3 94 36-129 177-289 (569)
309 cd07398 MPP_YbbF-LpxH Escheric 96.6 0.0019 4.2E-08 61.7 3.8 26 361-386 177-202 (217)
310 cd07390 MPP_AQ1575 Aquifex aeo 96.6 0.0059 1.3E-07 56.0 6.8 43 216-263 42-84 (168)
311 PF13174 TPR_6: Tetratricopept 96.6 0.0033 7.2E-08 40.1 3.7 31 104-134 2-32 (33)
312 COG4105 ComL DNA uptake lipopr 96.5 0.022 4.7E-07 54.8 10.4 112 68-182 34-151 (254)
313 KOG0551|consensus 96.5 0.0063 1.4E-07 60.1 6.8 104 49-153 56-170 (390)
314 PRK04036 DNA polymerase II sma 96.5 0.015 3.3E-07 62.8 10.4 72 189-262 244-344 (504)
315 cd07384 MPP_Cdc1_like Saccharo 96.4 0.016 3.5E-07 53.3 8.8 47 216-262 45-101 (171)
316 COG2908 Uncharacterized protei 96.3 0.0075 1.6E-07 57.3 5.9 187 204-421 19-227 (237)
317 COG4976 Predicted methyltransf 96.3 0.005 1.1E-07 57.8 4.6 61 77-137 4-64 (287)
318 PF13174 TPR_6: Tetratricopept 96.3 0.0079 1.7E-07 38.3 4.3 31 70-100 2-32 (33)
319 cd08163 MPP_Cdc1 Saccharomyces 96.3 0.15 3.3E-06 50.1 15.1 33 359-393 202-234 (257)
320 cd07391 MPP_PF1019 Pyrococcus 96.2 0.011 2.5E-07 54.3 6.7 47 217-263 42-90 (172)
321 KOG0545|consensus 96.1 0.017 3.7E-07 54.7 7.2 81 68-148 178-276 (329)
322 TIGR03729 acc_ester putative p 96.1 0.0071 1.5E-07 58.9 5.0 67 191-261 2-74 (239)
323 smart00028 TPR Tetratricopepti 96.1 0.0078 1.7E-07 37.2 3.6 30 104-133 3-32 (34)
324 PF13176 TPR_7: Tetratricopept 96.1 0.0098 2.1E-07 39.2 4.1 23 71-93 2-24 (36)
325 PF04781 DUF627: Protein of un 96.1 0.047 1E-06 45.6 8.9 91 41-131 2-107 (111)
326 KOG3824|consensus 96.1 0.025 5.5E-07 55.3 8.2 82 31-112 112-194 (472)
327 TIGR00024 SbcD_rel_arch putati 96.0 0.016 3.4E-07 55.8 6.6 43 216-262 58-103 (225)
328 PRK04841 transcriptional regul 96.0 0.08 1.7E-06 61.9 13.8 98 35-132 452-561 (903)
329 smart00028 TPR Tetratricopepti 96.0 0.01 2.2E-07 36.6 3.7 32 69-100 2-33 (34)
330 KOG1586|consensus 96.0 0.1 2.2E-06 49.4 11.5 103 30-133 29-145 (288)
331 PF13176 TPR_7: Tetratricopept 96.0 0.0082 1.8E-07 39.6 3.1 29 104-132 1-29 (36)
332 PF04184 ST7: ST7 protein; In 95.9 0.096 2.1E-06 54.8 12.2 109 37-145 261-389 (539)
333 TIGR00619 sbcd exonuclease Sbc 95.9 0.013 2.8E-07 57.5 5.7 58 203-261 27-88 (253)
334 PF03704 BTAD: Bacterial trans 95.9 0.07 1.5E-06 47.4 10.0 64 33-96 60-124 (146)
335 PRK09453 phosphodiesterase; Pr 95.9 0.015 3.2E-07 54.0 5.7 60 462-527 6-73 (182)
336 PRK04841 transcriptional regul 95.9 0.11 2.4E-06 60.8 14.2 100 34-133 490-604 (903)
337 KOG1308|consensus 95.9 0.0025 5.5E-08 63.1 0.4 75 79-153 125-199 (377)
338 cd07396 MPP_Nbla03831 Homo sap 95.8 0.016 3.5E-07 57.4 5.9 72 191-263 3-88 (267)
339 KOG4507|consensus 95.8 0.028 6.2E-07 59.3 7.7 107 37-143 214-324 (886)
340 PF10300 DUF3808: Protein of u 95.8 0.076 1.7E-06 57.0 11.3 105 48-152 246-356 (468)
341 cd07402 MPP_GpdQ Enterobacter 95.7 0.017 3.7E-07 56.0 5.8 67 191-261 2-83 (240)
342 PRK11148 cyclic 3',5'-adenosin 95.7 0.019 4.1E-07 57.1 6.2 70 190-261 16-98 (275)
343 KOG4814|consensus 95.7 0.1 2.2E-06 55.9 11.4 96 36-131 355-457 (872)
344 PRK10941 hypothetical protein; 95.7 0.12 2.6E-06 51.0 11.3 77 36-112 182-259 (269)
345 KOG3081|consensus 95.6 0.071 1.5E-06 51.4 9.0 84 69-152 170-257 (299)
346 KOG3081|consensus 95.6 0.2 4.3E-06 48.4 11.9 100 38-137 172-277 (299)
347 PHA02546 47 endonuclease subun 95.6 0.019 4.1E-07 59.0 5.5 59 202-261 26-89 (340)
348 cd08165 MPP_MPPE1 human MPPE1 95.5 0.14 3.1E-06 46.2 10.6 46 216-261 38-89 (156)
349 cd00844 MPP_Dbr1_N Dbr1 RNA la 95.5 0.017 3.8E-07 56.8 4.9 70 191-261 1-86 (262)
350 KOG1585|consensus 95.5 0.29 6.4E-06 46.7 12.6 102 34-135 30-143 (308)
351 KOG3364|consensus 95.5 0.094 2E-06 45.3 8.4 82 65-146 29-115 (149)
352 KOG2471|consensus 95.4 0.019 4.1E-07 59.4 4.8 81 35-115 283-382 (696)
353 KOG2610|consensus 95.4 0.069 1.5E-06 53.0 8.4 121 36-156 104-229 (491)
354 cd08166 MPP_Cdc1_like_1 unchar 95.4 0.021 4.5E-07 53.3 4.7 45 216-260 42-92 (195)
355 KOG2610|consensus 95.3 0.11 2.4E-06 51.6 9.3 103 26-128 128-235 (491)
356 cd00840 MPP_Mre11_N Mre11 nucl 95.2 0.024 5.3E-07 54.1 4.8 59 203-263 29-91 (223)
357 KOG1915|consensus 95.2 0.23 4.9E-06 51.6 11.5 96 37-132 406-501 (677)
358 KOG2053|consensus 95.2 0.098 2.1E-06 58.1 9.5 116 29-145 37-153 (932)
359 KOG0530|consensus 95.0 0.83 1.8E-05 44.2 14.1 109 45-153 53-164 (318)
360 cd00838 MPP_superfamily metall 95.0 0.053 1.1E-06 46.2 5.9 66 462-527 3-68 (131)
361 KOG1941|consensus 95.0 0.068 1.5E-06 53.6 7.1 96 37-132 124-236 (518)
362 PF14561 TPR_20: Tetratricopep 95.0 0.21 4.5E-06 40.6 8.9 47 88-134 8-54 (90)
363 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.25 5.4E-06 38.6 8.7 64 34-97 5-72 (80)
364 KOG1915|consensus 95.0 0.44 9.5E-06 49.6 13.0 99 38-136 76-175 (677)
365 PF02259 FAT: FAT domain; Int 95.0 0.52 1.1E-05 48.2 14.1 149 31-179 142-341 (352)
366 COG2129 Predicted phosphoester 94.8 2.2 4.8E-05 40.4 16.2 212 190-431 5-225 (226)
367 PF14561 TPR_20: Tetratricopep 94.8 0.091 2E-06 42.6 6.1 75 53-127 6-83 (90)
368 KOG1070|consensus 94.8 0.39 8.4E-06 56.0 13.0 136 29-176 1452-1596(1710)
369 cd07393 MPP_DR1119 Deinococcus 94.7 0.055 1.2E-06 52.4 5.6 43 216-260 41-83 (232)
370 cd08164 MPP_Ted1 Saccharomyces 94.6 0.061 1.3E-06 50.1 5.2 67 194-260 22-110 (193)
371 COG2912 Uncharacterized conser 94.4 0.1 2.2E-06 50.8 6.6 73 68-140 181-253 (269)
372 KOG1586|consensus 94.4 0.62 1.3E-05 44.3 11.3 100 40-139 118-232 (288)
373 KOG4151|consensus 94.3 0.1 2.3E-06 57.3 7.2 114 32-145 50-170 (748)
374 cd00841 MPP_YfcE Escherichia c 94.2 0.067 1.5E-06 48.0 4.8 52 462-527 5-56 (155)
375 PF10602 RPN7: 26S proteasome 94.1 0.98 2.1E-05 41.7 12.3 97 34-130 35-141 (177)
376 PRK10966 exonuclease subunit S 94.1 0.068 1.5E-06 56.2 5.1 46 216-262 39-88 (407)
377 COG1409 Icc Predicted phosphoh 94.0 0.1 2.2E-06 52.0 6.2 73 191-266 3-83 (301)
378 PF09613 HrpB1_HrpK: Bacterial 94.0 1 2.3E-05 40.4 11.7 86 33-118 8-94 (160)
379 KOG3364|consensus 94.0 0.61 1.3E-05 40.4 9.7 72 37-108 34-111 (149)
380 TIGR00583 mre11 DNA repair pro 94.0 0.091 2E-06 55.0 5.7 50 190-240 5-66 (405)
381 PF13374 TPR_10: Tetratricopep 93.8 0.14 2.9E-06 34.3 4.6 29 69-97 3-31 (42)
382 PF09986 DUF2225: Uncharacteri 93.8 0.56 1.2E-05 44.7 10.2 90 44-133 86-196 (214)
383 COG1407 Predicted ICC-like pho 93.6 0.14 3E-06 49.0 5.7 98 189-309 20-138 (235)
384 COG3898 Uncharacterized membra 93.6 1.4 3.1E-05 44.9 12.9 169 37-210 122-292 (531)
385 COG4976 Predicted methyltransf 93.5 0.11 2.4E-06 49.0 4.7 60 43-102 3-63 (287)
386 COG3118 Thioredoxin domain-con 93.5 0.43 9.3E-06 46.9 8.9 131 69-210 135-265 (304)
387 PF02259 FAT: FAT domain; Int 93.4 0.82 1.8E-05 46.8 11.6 101 34-134 183-341 (352)
388 PF05843 Suf: Suppressor of fo 93.3 0.96 2.1E-05 45.1 11.6 104 35-138 35-143 (280)
389 COG4186 Predicted phosphoester 93.2 0.11 2.3E-06 45.9 3.9 45 216-264 45-89 (186)
390 cd07380 MPP_CWF19_N Schizosacc 93.2 0.19 4.1E-06 45.0 5.5 120 192-384 1-121 (150)
391 KOG3662|consensus 93.2 0.21 4.6E-06 51.5 6.6 62 199-260 76-143 (410)
392 cd00839 MPP_PAPs purple acid p 93.2 0.08 1.7E-06 53.1 3.6 72 190-263 6-83 (294)
393 cd07401 MPP_TMEM62_N Homo sapi 93.1 0.16 3.6E-06 49.9 5.7 29 365-393 190-218 (256)
394 cd07385 MPP_YkuE_C Bacillus su 93.1 0.12 2.5E-06 49.5 4.5 39 487-527 34-73 (223)
395 KOG1070|consensus 93.0 1.2 2.5E-05 52.3 12.5 121 32-152 1494-1616(1710)
396 KOG1585|consensus 93.0 0.93 2E-05 43.4 10.0 91 37-127 73-175 (308)
397 COG1408 Predicted phosphohydro 92.9 0.18 4E-06 50.2 5.7 73 188-263 44-120 (284)
398 KOG2396|consensus 92.9 0.7 1.5E-05 48.5 9.9 90 54-143 90-181 (568)
399 cd07386 MPP_DNA_pol_II_small_a 92.9 0.12 2.5E-06 50.5 4.2 45 216-262 35-95 (243)
400 cd07388 MPP_Tt1561 Thermus the 92.8 0.25 5.5E-06 47.4 6.3 64 461-527 9-72 (224)
401 KOG1550|consensus 92.7 1.5 3.3E-05 48.2 13.0 105 38-147 291-407 (552)
402 PRK13184 pknD serine/threonine 92.7 0.4 8.7E-06 55.2 8.6 99 42-141 482-591 (932)
403 COG3914 Spy Predicted O-linked 92.7 0.87 1.9E-05 48.7 10.3 113 29-142 62-182 (620)
404 PF07079 DUF1347: Protein of u 92.6 2.1 4.6E-05 44.6 12.7 95 32-127 376-520 (549)
405 KOG0529|consensus 92.6 1.3 2.7E-05 45.6 11.1 131 48-178 88-226 (421)
406 PF13281 DUF4071: Domain of un 92.4 1.8 3.8E-05 44.7 12.0 163 41-210 147-334 (374)
407 cd07379 MPP_239FB Homo sapiens 92.0 0.21 4.6E-06 43.7 4.3 54 462-527 5-60 (135)
408 PF13374 TPR_10: Tetratricopep 91.9 0.37 8E-06 32.1 4.6 30 35-64 2-31 (42)
409 PF12850 Metallophos_2: Calcin 91.8 0.26 5.6E-06 43.9 4.8 52 462-527 6-57 (156)
410 PF09613 HrpB1_HrpK: Bacterial 91.7 1 2.2E-05 40.5 8.2 85 68-152 10-94 (160)
411 PF12862 Apc5: Anaphase-promot 91.5 1 2.3E-05 36.7 7.6 53 45-97 8-70 (94)
412 PF12862 Apc5: Anaphase-promot 91.4 0.7 1.5E-05 37.7 6.5 58 77-134 7-73 (94)
413 cd07391 MPP_PF1019 Pyrococcus 91.4 0.35 7.7E-06 44.3 5.3 42 486-527 42-85 (172)
414 cd07397 MPP_DevT Myxococcus xa 91.1 0.4 8.6E-06 46.3 5.4 55 462-527 6-60 (238)
415 KOG2047|consensus 91.0 2.1 4.6E-05 46.3 11.0 104 29-135 343-457 (835)
416 cd08165 MPP_MPPE1 human MPPE1 90.8 0.66 1.4E-05 41.8 6.4 41 487-527 40-86 (156)
417 cd07392 MPP_PAE1087 Pyrobaculu 90.7 0.45 9.8E-06 43.8 5.4 58 462-527 4-62 (188)
418 COG2912 Uncharacterized conser 90.7 1.7 3.6E-05 42.5 9.2 74 38-111 184-258 (269)
419 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.42 9.1E-06 31.9 3.6 27 71-97 4-30 (38)
420 cd00845 MPP_UshA_N_like Escher 90.6 0.3 6.4E-06 47.8 4.2 65 191-260 3-81 (252)
421 cd07384 MPP_Cdc1_like Saccharo 90.1 0.5 1.1E-05 43.3 5.1 41 487-527 47-97 (171)
422 COG0790 FOG: TPR repeat, SEL1 90.1 3.8 8.1E-05 40.8 11.8 95 37-133 111-222 (292)
423 cd07404 MPP_MS158 Microscilla 90.1 0.25 5.5E-06 44.9 3.0 39 486-527 27-65 (166)
424 PF04781 DUF627: Protein of un 90.0 1.7 3.8E-05 36.4 7.6 91 74-175 2-106 (111)
425 COG0420 SbcD DNA repair exonuc 90.0 0.45 9.8E-06 49.9 5.3 63 200-263 25-90 (390)
426 PF10516 SHNi-TPR: SHNi-TPR; 90.0 0.37 8E-06 32.1 2.9 30 103-132 2-31 (38)
427 PRK11340 phosphodiesterase Yae 89.9 0.57 1.2E-05 46.5 5.6 39 487-527 82-122 (271)
428 cd02682 MIT_AAA_Arch MIT: doma 89.9 2.7 5.9E-05 32.7 8.0 52 34-111 5-56 (75)
429 COG2976 Uncharacterized protei 89.8 1.5 3.3E-05 40.6 7.7 69 34-102 125-193 (207)
430 PF07079 DUF1347: Protein of u 89.8 2.1 4.7E-05 44.5 9.5 57 36-92 463-519 (549)
431 PF12968 DUF3856: Domain of Un 89.6 5.8 0.00012 33.8 10.3 72 26-97 46-129 (144)
432 COG3629 DnrI DNA-binding trans 89.5 4 8.7E-05 40.4 10.9 64 68-131 153-216 (280)
433 PF08631 SPO22: Meiosis protei 89.4 5.3 0.00012 39.7 12.2 95 45-139 3-124 (278)
434 PF08424 NRDE-2: NRDE-2, neces 89.3 5.8 0.00013 40.4 12.5 86 56-141 6-104 (321)
435 COG3898 Uncharacterized membra 89.1 3.9 8.4E-05 41.9 10.5 98 36-134 189-295 (531)
436 KOG4814|consensus 88.9 3.6 7.8E-05 44.6 10.6 73 68-140 354-432 (872)
437 PF07720 TPR_3: Tetratricopept 88.8 0.98 2.1E-05 29.7 4.2 29 71-99 4-34 (36)
438 KOG1550|consensus 88.7 2.2 4.7E-05 47.0 9.5 112 33-148 242-372 (552)
439 TIGR02561 HrpB1_HrpK type III 88.6 6.8 0.00015 34.8 10.6 84 35-118 10-94 (153)
440 PF07720 TPR_3: Tetratricopept 88.5 1.5 3.3E-05 28.8 5.0 31 104-134 3-35 (36)
441 PF09986 DUF2225: Uncharacteri 88.5 2.2 4.8E-05 40.6 8.2 52 50-101 140-198 (214)
442 KOG2041|consensus 88.4 4.7 0.0001 44.2 11.2 89 29-128 790-878 (1189)
443 PRK05340 UDP-2,3-diacylglucosa 88.3 0.78 1.7E-05 44.6 5.2 40 487-527 34-80 (241)
444 cd08163 MPP_Cdc1 Saccharomyces 87.9 0.44 9.6E-06 46.8 3.2 42 487-528 47-96 (257)
445 KOG3617|consensus 87.6 4.2 9.1E-05 45.4 10.3 96 36-131 859-996 (1416)
446 KOG3325|consensus 87.4 6.1 0.00013 34.8 9.3 120 191-395 3-127 (183)
447 cd08166 MPP_Cdc1_like_1 unchar 87.4 1.1 2.4E-05 41.9 5.3 57 487-543 44-108 (195)
448 KOG2047|consensus 87.4 7.1 0.00015 42.6 11.7 111 36-146 388-521 (835)
449 PF08424 NRDE-2: NRDE-2, neces 87.4 11 0.00024 38.4 13.1 104 29-132 13-132 (321)
450 PF07721 TPR_4: Tetratricopept 86.8 0.8 1.7E-05 27.5 2.7 23 104-126 3-25 (26)
451 TIGR00040 yfcE phosphoesterase 86.5 1 2.2E-05 40.6 4.5 55 462-527 6-61 (158)
452 cd07400 MPP_YydB Bacillus subt 86.5 1.6 3.5E-05 38.4 5.8 41 486-527 36-78 (144)
453 PF14582 Metallophos_3: Metall 86.5 0.54 1.2E-05 44.5 2.7 73 190-263 7-104 (255)
454 cd07390 MPP_AQ1575 Aquifex aeo 86.2 0.84 1.8E-05 41.7 3.8 37 486-527 43-79 (168)
455 TIGR03729 acc_ester putative p 86.1 1.1 2.4E-05 43.5 4.8 39 486-527 33-71 (239)
456 KOG0530|consensus 86.1 6.8 0.00015 38.1 9.8 115 32-146 74-191 (318)
457 COG1311 HYS2 Archaeal DNA poly 85.7 7 0.00015 41.3 10.5 218 190-431 227-471 (481)
458 COG3914 Spy Predicted O-linked 85.3 5.9 0.00013 42.7 9.8 103 48-152 43-151 (620)
459 PF08631 SPO22: Meiosis protei 85.0 14 0.00031 36.6 12.3 105 29-133 29-152 (278)
460 KOG0918|consensus 85.0 0.039 8.5E-07 55.7 -5.9 195 215-420 46-249 (476)
461 TIGR01854 lipid_A_lpxH UDP-2,3 84.7 1.8 4E-05 41.7 5.6 41 486-527 31-78 (231)
462 cd07378 MPP_ACP5 Homo sapiens 84.1 1.2 2.6E-05 44.1 4.1 24 362-385 190-213 (277)
463 COG4941 Predicted RNA polymera 84.1 2.5 5.4E-05 42.3 6.1 91 50-140 311-403 (415)
464 PF10373 EST1_DNA_bind: Est1 D 84.0 1.6 3.4E-05 43.1 5.0 61 54-114 1-62 (278)
465 COG5191 Uncharacterized conser 84.0 1.7 3.7E-05 43.0 4.9 76 67-142 106-182 (435)
466 COG3947 Response regulator con 84.0 3.7 8E-05 40.4 7.1 58 71-128 282-339 (361)
467 cd00840 MPP_Mre11_N Mre11 nucl 83.9 1.9 4.1E-05 40.9 5.3 41 487-527 43-86 (223)
468 PF13281 DUF4071: Domain of un 83.6 41 0.0009 34.8 15.0 111 68-180 141-259 (374)
469 TIGR02561 HrpB1_HrpK type III 83.5 5 0.00011 35.6 7.1 82 71-152 13-94 (153)
470 PF04910 Tcf25: Transcriptiona 83.4 10 0.00022 39.3 10.7 76 62-137 33-139 (360)
471 PLN02533 probable purple acid 83.2 1.3 2.8E-05 47.0 4.1 69 190-262 141-212 (427)
472 PF14863 Alkyl_sulf_dimr: Alky 83.1 8.8 0.00019 33.9 8.7 54 67-120 69-122 (141)
473 PF07721 TPR_4: Tetratricopept 83.0 1.5 3.2E-05 26.3 2.7 23 70-92 3-25 (26)
474 cd07399 MPP_YvnB Bacillus subt 83.0 2.3 5.1E-05 40.4 5.5 39 487-527 37-79 (214)
475 TIGR00619 sbcd exonuclease Sbc 83.0 2.4 5.2E-05 41.5 5.7 41 487-527 41-85 (253)
476 KOG2300|consensus 82.6 20 0.00043 38.0 12.1 95 34-132 366-475 (629)
477 KOG0546|consensus 82.4 0.91 2E-05 45.7 2.4 83 36-118 276-359 (372)
478 KOG0529|consensus 82.3 30 0.00064 36.0 13.1 108 45-152 38-161 (421)
479 COG3629 DnrI DNA-binding trans 82.3 8.8 0.00019 38.0 9.2 65 33-97 151-216 (280)
480 cd07410 MPP_CpdB_N Escherichia 82.3 1.2 2.6E-05 44.2 3.3 20 365-384 209-229 (277)
481 COG4649 Uncharacterized protei 82.2 15 0.00032 33.6 9.6 94 37-130 96-195 (221)
482 PF11207 DUF2989: Protein of u 82.1 11 0.00024 35.3 9.2 71 50-122 121-198 (203)
483 cd02683 MIT_1 MIT: domain cont 81.8 17 0.00037 28.4 8.9 31 33-63 4-34 (77)
484 KOG3617|consensus 81.7 18 0.00038 40.8 11.8 61 68-128 858-938 (1416)
485 TIGR00024 SbcD_rel_arch putati 81.5 4.1 8.9E-05 39.2 6.5 51 473-527 46-99 (225)
486 COG5191 Uncharacterized conser 81.2 1.8 3.8E-05 42.9 3.8 80 28-107 100-181 (435)
487 cd07396 MPP_Nbla03831 Homo sap 80.7 3.3 7.1E-05 40.9 5.8 38 487-527 42-83 (267)
488 KOG3807|consensus 80.4 13 0.00028 37.3 9.5 93 39-133 188-306 (556)
489 PF10373 EST1_DNA_bind: Est1 D 80.2 5.5 0.00012 39.2 7.3 62 87-148 1-62 (278)
490 PRK15180 Vi polysaccharide bio 80.1 40 0.00086 35.7 13.1 124 44-178 298-422 (831)
491 PHA02546 47 endonuclease subun 80.0 2.9 6.3E-05 42.9 5.3 41 487-527 41-86 (340)
492 PRK10966 exonuclease subunit S 79.0 3.7 8.1E-05 43.2 5.8 40 487-527 41-84 (407)
493 PF04910 Tcf25: Transcriptiona 78.9 21 0.00045 37.0 11.1 107 28-134 96-225 (360)
494 KOG2863|consensus 78.6 2.3 5E-05 42.8 3.8 49 360-408 205-254 (456)
495 cd07393 MPP_DR1119 Deinococcus 78.5 4.7 0.0001 38.9 5.9 40 486-527 42-81 (232)
496 KOG2300|consensus 77.8 48 0.001 35.3 12.9 92 34-125 45-150 (629)
497 PF11817 Foie-gras_1: Foie gra 77.1 16 0.00036 35.5 9.4 79 51-129 154-245 (247)
498 KOG1310|consensus 76.7 5.1 0.00011 42.6 5.8 72 82-153 388-462 (758)
499 cd07383 MPP_Dcr2 Saccharomyces 76.7 5.6 0.00012 37.2 5.8 42 487-528 43-87 (199)
500 cd07386 MPP_DNA_pol_II_small_a 76.3 4.5 9.9E-05 39.2 5.2 39 487-527 37-91 (243)
No 1
>KOG0372|consensus
Probab=100.00 E-value=3.8e-74 Score=522.66 Aligned_cols=282 Identities=38% Similarity=0.737 Sum_probs=267.9
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeecccccc
Q psy11688 150 KRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDR 229 (546)
Q Consensus 150 ~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdr 229 (546)
++......+.+..+..++.+++++|.+++++..+..| +.++||+||++.|+..+|+..|.+++++ |+||||||||
T Consensus 8 e~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t~-YLFLGDyVDR 82 (303)
T KOG0372|consen 8 EQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPETN-YLFLGDYVDR 82 (303)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCCc-eEeecchhcc
Confidence 3344445677889999999999999999999999988 9999999999999999999988887765 9999999999
Q ss_pred CCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhc-hHHHHHHHHHhhccccceeeecceEEEEeCC
Q psy11688 230 GSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY-TDLMAQFFTEVYNWLPLCHCINNKVLVMHGG 308 (546)
Q Consensus 230 G~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgG 308 (546)
|.+|+|++.+|+.||.+||++|.+||||||++.++..|||++||.+|| +..+|+.+.+.|+.||++|+|++++||||||
T Consensus 83 G~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kifCVHGG 162 (303)
T KOG0372|consen 83 GYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIFCVHGG 162 (303)
T ss_pred ccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEEEEcCC
Confidence 999999999999999999999999999999999999999999999999 5789999999999999999999999999999
Q ss_pred ccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCc
Q psy11688 309 LFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGY 388 (546)
Q Consensus 309 i~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~ 388 (546)
+ ||...++++|+.++|..+.|+++.++|+|||||.+..+|..++||+|+.||.++++.||+.||+++|+|+||.+.+||
T Consensus 163 l-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQLv~eGy 241 (303)
T KOG0372|consen 163 L-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQLVMEGY 241 (303)
T ss_pred C-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHHHHhhH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCCCC
Q psy11688 389 EVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPP 438 (546)
Q Consensus 389 ~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
++.++++|+|||||||||+.++|.||||.| +.+....|..|++.|....
T Consensus 242 k~~F~~~v~TVWSAPNYCYrCGN~AsIl~l-de~~~~~F~vFeaa~~~~~ 290 (303)
T KOG0372|consen 242 KWHFDEKVVTVWSAPNYCYRCGNVAAILEL-DEDLDKDFRVFEAAPQESR 290 (303)
T ss_pred HHhcCCceEEEecCCchhhhcCChHHheee-ccccCcceEeeecchhhhc
Confidence 999999999999999999999999999999 6678889999999875443
No 2
>KOG0376|consensus
Probab=100.00 E-value=2e-69 Score=541.38 Aligned_cols=410 Identities=64% Similarity=1.051 Sum_probs=389.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYM 113 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 113 (546)
++.+.++|+.+++.+.|+.|+..|.+||+++|+ +..+.+||.++++.++|..|+.++.+|++++|...++|+++|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 566788999999999999999999999999997 8889999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh---------------------------------------
Q psy11688 114 SLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI--------------------------------------- 154 (546)
Q Consensus 114 ~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~--------------------------------------- 154 (546)
.++++.+|...|++...+.|+++.+...+.+|...+.+.++
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~~~~i~~~y~g~~le~~ 163 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEEDMDLIESDYSGPVLEDH 163 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccccccccccccccCCcccccc
Confidence 99999999999999999999999999999999887777544
Q ss_pred ----------------hhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCC
Q psy11688 155 ----------------KGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDN 218 (546)
Q Consensus 155 ----------------~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~ 218 (546)
+..++...+..++..+...+...|..+++..+....+.++||.||++.++.+++...+.|+...
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~ 243 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN 243 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc
Confidence 2233444555677888888999999999998888899999999999999999999999999999
Q ss_pred CeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeee
Q psy11688 219 PYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCI 298 (546)
Q Consensus 219 ~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~ 298 (546)
.++|.||++|||..+.|++..+.+.++.+|++++++|||||+..|+..|||.+++..+|.++.+..+.+.|.+||++..|
T Consensus 244 ~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~i 323 (476)
T KOG0376|consen 244 PYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHLI 323 (476)
T ss_pred cccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEE
Q psy11688 299 NNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYII 378 (546)
Q Consensus 299 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ii 378 (546)
+++++.+|||+++++..+++|+++|.|+.++++++.++++|||||...+|..++.||.|..||++++.+||+.++++.||
T Consensus 324 ~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i~ 403 (476)
T KOG0376|consen 324 NNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNLDKII 403 (476)
T ss_pred cCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCCCCCCCccc
Q psy11688 379 RSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEPALEN 444 (546)
Q Consensus 379 r~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~ 444 (546)
|||++.+.||++.|+|+|+|||||||||+.++|.||++++++.++++.|++|+++|||..+|+--.
T Consensus 404 rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma~~ 469 (476)
T KOG0376|consen 404 RSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMAYA 469 (476)
T ss_pred hccccCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcccc
Confidence 999999999999999999999999999999999999999988899999999999999999988643
No 3
>KOG0373|consensus
Probab=100.00 E-value=6.4e-68 Score=473.90 Aligned_cols=284 Identities=38% Similarity=0.681 Sum_probs=270.8
Q ss_pred hhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeecc
Q psy11688 146 NKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGD 225 (546)
Q Consensus 146 ~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD 225 (546)
.+.+...++.+.+++.+...+++..++++..+.++..++.| +.++|||||++.||.++|+..|.-|+++ |+|+||
T Consensus 7 d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~tn-YiFmGD 81 (306)
T KOG0373|consen 7 DQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDTN-YIFMGD 81 (306)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCcc-eEEecc
Confidence 34555666678899999999999999999999999998887 9999999999999999999988777665 999999
Q ss_pred ccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhc-hHHHHHHHHHhhccccceeeecceEEE
Q psy11688 226 FVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY-TDLMAQFFTEVYNWLPLCHCINNKVLV 304 (546)
Q Consensus 226 ~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~lP~~~~~~~~~~~ 304 (546)
|||||..|+|++.+++.||.+||.++.+||||||++.+...|||++||..|| +.++|+.+.++|+.|+++|+|+++++|
T Consensus 82 fVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~vLC 161 (306)
T KOG0373|consen 82 FVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKVLC 161 (306)
T ss_pred ccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcEEE
Confidence 9999999999999999999999999999999999999999999999999999 578999999999999999999999999
Q ss_pred EeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEecccc
Q psy11688 305 MHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVK 384 (546)
Q Consensus 305 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~ 384 (546)
||||+ ||+..++++|+.+.|..+.|+++.++|++||||.+...|..++||+|++||.+++.+|...|++++|.|+||.+
T Consensus 162 VHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQLV 240 (306)
T KOG0373|consen 162 VHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQLV 240 (306)
T ss_pred EcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEeCCCe-EEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCC
Q psy11688 385 QDGYEVAHDGR-CITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVS 436 (546)
Q Consensus 385 ~~G~~~~~~~~-~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
++||++++++| ++|||||||||+.++|.|+||.+ +.+++++++.|.++|..
T Consensus 241 ~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~-d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 241 QEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSF-DDNLERETKIFSAVPDN 292 (306)
T ss_pred HhhHHhccCCCCEEEEecCCchhhhccCeeeEEEe-cccCCccceeeeecCCc
Confidence 99999999998 99999999999999999999999 67889999999999754
No 4
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.5e-66 Score=518.02 Aligned_cols=296 Identities=68% Similarity=1.194 Sum_probs=277.4
Q ss_pred hhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccc
Q psy11688 147 KIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDF 226 (546)
Q Consensus 147 ~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~ 226 (546)
..+++......++...+.+++.++.+++.++|.++++..|...+++++||+||++.++.++|+..++++..+.|+|||||
T Consensus 18 ~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDy 97 (316)
T cd07417 18 EMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDF 97 (316)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeE
Confidence 34444444556888899999999999999999999998776677999999999999999999999988777789999999
Q ss_pred cccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEe
Q psy11688 227 VDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMH 306 (546)
Q Consensus 227 vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vH 306 (546)
||||++|+|++.+++++|+.+|++|++||||||.+.++..|||..|+..+|+..+|..+.++|++||++++++++++|||
T Consensus 98 VDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f~~LPlaaii~~~~~~vH 177 (316)
T cd07417 98 VDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFNWLPLAHLINGKVLVVH 177 (316)
T ss_pred ecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHHHhchHhheeCCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEecccccc
Q psy11688 307 GGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQD 386 (546)
Q Consensus 307 gGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~ 386 (546)
||++++...+++++++++|+.+++.+++++|+|||||....++.+++||.|+.||++++++||++||+++||||||++++
T Consensus 178 gGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~ 257 (316)
T cd07417 178 GGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDE 257 (316)
T ss_pred cccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHHHHcCCcEEEECCcccce
Confidence 99977788999999999999988899999999999999888999999999999999999999999999999999999999
Q ss_pred CceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCCCCCCCc
Q psy11688 387 GYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEPAL 442 (546)
Q Consensus 387 G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~l 442 (546)
||++.++++|+|||||||||+..+|+||+|.|+..+++++|++|++.++|...|+.
T Consensus 258 G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 313 (316)
T cd07417 258 GYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHPNVKPMA 313 (316)
T ss_pred eEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCCCCCccC
Confidence 99999999999999999999999999999999544889999999999999998875
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=8.4e-66 Score=510.79 Aligned_cols=281 Identities=44% Similarity=0.846 Sum_probs=253.6
Q ss_pred hhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeecccc
Q psy11688 148 IVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFV 227 (546)
Q Consensus 148 ~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~v 227 (546)
.+........++...+..+++++.+++.++|+++++..+...+++++||+||++.+|.++++..++++..+.|+||||||
T Consensus 10 ~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyV 89 (321)
T cd07420 10 LIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFV 89 (321)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEecccc
Confidence 33344444567788999999999999999999999987666679999999999999999999999887777899999999
Q ss_pred ccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhch---HHHHHHHHHhhccccceeeecceEEE
Q psy11688 228 DRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYT---DLMAQFFTEVYNWLPLCHCINNKVLV 304 (546)
Q Consensus 228 drG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~lP~~~~~~~~~~~ 304 (546)
|||++|+||+.+++++|+.+|+++++||||||.+.++..|||.+|+..+|+ ..+|..+.++|++||++|++++++||
T Consensus 90 DRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaaii~~~i~c 169 (321)
T cd07420 90 DRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILV 169 (321)
T ss_pred CCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEEEcCCEEE
Confidence 999999999999999999999999999999999999999999999999996 78999999999999999999999999
Q ss_pred EeCCccCCCCCChhhhhccCCCC-----CCCC----------------------chhhhhhhcCCCCCCCC-CCCCCCCC
Q psy11688 305 MHGGLFSSDNVTLEDIRTIDRNR-----QPPD----------------------EGLMCELLWSDPQIPNG-RAPSKRGV 356 (546)
Q Consensus 305 vHgGi~~~~~~~~~~i~~~~r~~-----~~~~----------------------~~~~~dllWsdp~~~~~-~~~~~rg~ 356 (546)
||||| ++ ..++++|+.++|+. .++. .+++.|+|||||....+ +.+++||.
T Consensus 170 vHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~~~~~~RG~ 247 (321)
T cd07420 170 VHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGCKPNTFRGG 247 (321)
T ss_pred EeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCCCccCCCCC
Confidence 99999 55 56899999998842 1111 14678999999997665 56678999
Q ss_pred eeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEe
Q psy11688 357 GVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYE 431 (546)
Q Consensus 357 ~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~ 431 (546)
|+.||++++++||++|++++||||||++++||++.++++|+|||||||||+..+|.||+|.| +++++++|.+|.
T Consensus 248 g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~gavl~i-~~~~~~~f~~~~ 321 (321)
T cd07420 248 GCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKL-GPDLTPHFVQYQ 321 (321)
T ss_pred ccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEEEEEE-CCCCceeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999 678899999874
No 6
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.2e-63 Score=491.57 Aligned_cols=273 Identities=39% Similarity=0.734 Sum_probs=258.2
Q ss_pred hhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCCh
Q psy11688 154 IKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFS 233 (546)
Q Consensus 154 ~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~ 233 (546)
....++.+++..+++++.+++.++|.++++..+ +.++||+||++.++.++++..++++. +.++|+|||||||+++
T Consensus 11 ~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLGDyVDRG~~s 85 (285)
T cd07415 11 KCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLGDYVDRGYYS 85 (285)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEeEECCCCcCH
Confidence 344577889999999999999999999998765 99999999999999999999888754 5699999999999999
Q ss_pred HHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhch-HHHHHHHHHhhccccceeeecceEEEEeCCccCC
Q psy11688 234 VECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYT-DLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSS 312 (546)
Q Consensus 234 ~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~ 312 (546)
+|++.++++++..+|.+++++|||||.+.++..|||..|+..+|+ ..+|..+.++|++||++++++++++|||||| +|
T Consensus 86 ~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~cvHgGi-~p 164 (285)
T cd07415 86 VETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGL-SP 164 (285)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEEEEcCCC-CC
Confidence 999999999999999999999999999999999999999999997 4899999999999999999999999999999 88
Q ss_pred CCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeC
Q psy11688 313 DNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAH 392 (546)
Q Consensus 313 ~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~ 392 (546)
...++++|++++|+.+++.++++.|+|||||....+|.+++||.|+.||++++++||++||+++||||||++++||++.+
T Consensus 165 ~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~ 244 (285)
T cd07415 165 SIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMF 244 (285)
T ss_pred CcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCccccceEEEec
Confidence 99999999999999988889999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeec
Q psy11688 393 DGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAV 433 (546)
Q Consensus 393 ~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 433 (546)
+++|+|||||||||+..+|+||+|.| +++.+++|++|++.
T Consensus 245 ~~~~~TvfSa~~y~~~~~n~~a~l~i-~~~~~~~~~~~~~~ 284 (285)
T cd07415 245 DDKLVTVWSAPNYCYRCGNVASIMEL-DEHLKRSFKVFEAA 284 (285)
T ss_pred CCcEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeccC
Confidence 99999999999999999999999999 67889999999854
No 7
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=2.3e-63 Score=492.41 Aligned_cols=269 Identities=41% Similarity=0.807 Sum_probs=255.7
Q ss_pred chHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHH
Q psy11688 158 LHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECI 237 (546)
Q Consensus 158 l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l 237 (546)
+...++..+++++.+++.++|.++++..+ +.++||+||++.++.++++..++++. +.|+|||||||||++++|++
T Consensus 32 l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~-~~ylfLGDyVDRG~~s~evl 106 (320)
T PTZ00480 32 LTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPE-SNYLFLGDYVDRGKQSLETI 106 (320)
T ss_pred CCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCc-ceEEEeceecCCCCCcHHHH
Confidence 56688999999999999999999998765 99999999999999999999888864 46999999999999999999
Q ss_pred HHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCCh
Q psy11688 238 FTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTL 317 (546)
Q Consensus 238 ~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~ 317 (546)
.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|.+||++|++++++||||||| +|...++
T Consensus 107 ~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaAiI~~~i~cvHGGI-~p~~~~l 185 (320)
T PTZ00480 107 CLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGL-SPELSNL 185 (320)
T ss_pred HHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhheecCcEEEEcCCc-CcccCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred hhhhccCCCCCCCCchhhhhhhcCCCCC-CCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeE
Q psy11688 318 EDIRTIDRNRQPPDEGLMCELLWSDPQI-PNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRC 396 (546)
Q Consensus 318 ~~i~~~~r~~~~~~~~~~~dllWsdp~~-~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~ 396 (546)
++|+.++||.+.+.+++++|+|||||.. ..+|.+++||.|+.||++++++||++||+++||||||++++||++.++++|
T Consensus 186 ~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~ 265 (320)
T PTZ00480 186 EQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQL 265 (320)
T ss_pred HHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCcE
Confidence 9999999999899999999999999986 468999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeec
Q psy11688 397 ITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAV 433 (546)
Q Consensus 397 itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 433 (546)
+|||||||||+..+|.||+|.| ++++.+.|++|.+.
T Consensus 266 iTvFSa~~Y~~~~~N~ga~l~i-~~~~~~~~~~~~p~ 301 (320)
T PTZ00480 266 VTLFSAPNYCGEFDNAGSMMTI-DESLMCSFQILKPA 301 (320)
T ss_pred EEEeCCcccCCCCCccEEEEEE-CCCCcEeEEEecCC
Confidence 9999999999999999999999 77889999988754
No 8
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=3.7e-63 Score=493.26 Aligned_cols=283 Identities=39% Similarity=0.714 Sum_probs=261.0
Q ss_pred hhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeecccccc
Q psy11688 150 KRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDR 229 (546)
Q Consensus 150 ~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdr 229 (546)
+....+..++..++.+++++++++++++|.++++..+ +.++||+||++.++.++|+..+.++ .+.|+||||||||
T Consensus 8 ~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~-~~~ylFLGDyVDR 82 (305)
T cd07416 8 AHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPA-NTRYLFLGDYVDR 82 (305)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCC-CceEEEECCccCC
Confidence 3344455678899999999999999999999999765 9999999999999999999988775 4579999999999
Q ss_pred CCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCc
Q psy11688 230 GSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGL 309 (546)
Q Consensus 230 G~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi 309 (546)
|++|+|++.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|++||++++++++++|||||+
T Consensus 83 G~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~vHGGi 162 (305)
T cd07416 83 GYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLCVHGGL 162 (305)
T ss_pred CCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCC-------CCCC-CCCCCeeeeCHHHHHHHHHhcCCcEEEEec
Q psy11688 310 FSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPN-------GRAP-SKRGVGVHFGPDVTKAFLERNKLEYIIRSH 381 (546)
Q Consensus 310 ~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~-------~~~~-~~rg~~~~fg~~~~~~fl~~~~~~~iir~H 381 (546)
+|...++++|++++|+.+++..++++|+|||||.... +|.+ ++||.|+.||++++++||++||+++|||||
T Consensus 163 -~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~iiR~H 241 (305)
T cd07416 163 -SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAH 241 (305)
T ss_pred -CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeEEEEec
Confidence 8899999999999999988889999999999997543 2554 489999999999999999999999999999
Q ss_pred cccccCceEeCCC------eEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCCCCCC
Q psy11688 382 EVKQDGYEVAHDG------RCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEP 440 (546)
Q Consensus 382 ~~~~~G~~~~~~~------~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~p 440 (546)
|++++||++.+++ +|||||||||||+..+|+||+|.| +++ ..+|.+|.++|||.+.|
T Consensus 242 e~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i-~~~-~~~~~~~~~~~~~~~~~ 304 (305)
T cd07416 242 EAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLP 304 (305)
T ss_pred cccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEE-cCC-cceEEEecCCCCCCCCC
Confidence 9999999999886 999999999999999999999999 444 46999999999998865
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=3.5e-63 Score=490.42 Aligned_cols=276 Identities=39% Similarity=0.668 Sum_probs=258.2
Q ss_pred hhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCCh
Q psy11688 154 IKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFS 233 (546)
Q Consensus 154 ~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~ 233 (546)
....++..++.++++++.+++.++|.++++..+ +.++||+||++.++.++++..+.++. +.++|+|||||||+++
T Consensus 12 ~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s 86 (303)
T PTZ00239 12 NGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIPN-ANYIFIGDFVDRGYNS 86 (303)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEeeeEcCCCCCH
Confidence 344577889999999999999999999999765 99999999999999999999887654 5699999999999999
Q ss_pred HHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhch-HHHHHHHHHhhccccceeeecceEEEEeCCccCC
Q psy11688 234 VECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYT-DLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSS 312 (546)
Q Consensus 234 ~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~ 312 (546)
.|++.+++++|..+|.+++++|||||.+.++..|||..|+..+|+ ..+|+.+.++|++||++++++++++|||||| +|
T Consensus 87 ~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~cvHgGi-~p 165 (303)
T PTZ00239 87 VETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGL-SP 165 (303)
T ss_pred HHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEEEEcCcc-Cc
Confidence 999999999999999999999999999999999999999999996 4799999999999999999999999999999 88
Q ss_pred CCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeC
Q psy11688 313 DNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAH 392 (546)
Q Consensus 313 ~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~ 392 (546)
...++++|+.++|+.+.+.++.++|+|||||....+|.+++||.|+.||++++++||++||+++||||||++++||++.+
T Consensus 166 ~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~ 245 (303)
T PTZ00239 166 DMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWF 245 (303)
T ss_pred ccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhccceEEEe
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999876
Q ss_pred CC-eEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCC
Q psy11688 393 DG-RCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVS 436 (546)
Q Consensus 393 ~~-~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
++ +|+|||||||||+..+|+||+|.| +++++++|++|.+++..
T Consensus 246 ~~~~~iTvfSa~~Y~~~~~N~~ail~i-~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 246 PDQNLVTVWSAPNYCYRCGNIASILCL-DENLQQTWKTFKEVPES 289 (303)
T ss_pred CCCeEEEEECCCcccCCCCceEEEEEE-CCCCcEeeEEeeCCCcc
Confidence 54 599999999999999999999999 77889999999987653
No 10
>KOG0374|consensus
Probab=100.00 E-value=4.5e-63 Score=491.75 Aligned_cols=268 Identities=41% Similarity=0.786 Sum_probs=257.2
Q ss_pred chHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhC-CCCCCCCeeeeccccccCCChHHH
Q psy11688 158 LHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNG-LPSPDNPYLFNGDFVDRGSFSVEC 236 (546)
Q Consensus 158 l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~-~~~~~~~~~~lGD~vdrG~~~~e~ 236 (546)
+.+.++.+++..+.+++..+|.++++.+| +.++||+||++.||.+++...+ +|++. .|+|||||||||++|+|+
T Consensus 32 l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~~-~ylFLGDYVDRG~~slE~ 106 (331)
T KOG0374|consen 32 LSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPDQ-NYVFLGDYVDRGKQSLET 106 (331)
T ss_pred ccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCcc-cEEEecccccCCccceEE
Confidence 56678899999999999999999999987 9999999999999999999999 88554 699999999999999999
Q ss_pred HHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhch-HHHHHHHHHhhccccceeeecceEEEEeCCccCCCCC
Q psy11688 237 IFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYT-DLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNV 315 (546)
Q Consensus 237 l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~ 315 (546)
+.+++++|++||++|+++|||||.+.++..|||++||..+|+ ..+|+.|++.|++||++|+|+++++|+|||+ ||...
T Consensus 107 i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l~ 185 (331)
T KOG0374|consen 107 ICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHLK 185 (331)
T ss_pred eehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhhc
Confidence 999999999999999999999999999999999999999998 6999999999999999999999999999999 99999
Q ss_pred ChhhhhccCCCCCCCCchhhhhhhcCCCCCC-CCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCC
Q psy11688 316 TLEDIRTIDRNRQPPDEGLMCELLWSDPQIP-NGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDG 394 (546)
Q Consensus 316 ~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~-~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~ 394 (546)
++++|+.|.||.++++.++++|++||||... .+|.++.||.++.||++++++||+++++++||||||++++||+++.++
T Consensus 186 ~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r 265 (331)
T KOG0374|consen 186 SLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGR 265 (331)
T ss_pred ChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecCc
Confidence 9999999999999999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEee
Q psy11688 395 RCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEA 432 (546)
Q Consensus 395 ~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 432 (546)
|++||||||+|||.+.|.||+|.| ++++.++|....+
T Consensus 266 ~lvTIFSAP~Ycg~~~n~gavm~V-d~~l~~sf~~l~p 302 (331)
T KOG0374|consen 266 KLVTIFSAPNYCGEFDNAGAVMRV-DKNLKCSFVILRP 302 (331)
T ss_pred eEEEEecCchhccccCCceEEEEE-CCCCeEEEEEecc
Confidence 999999999999999999999999 7888899888765
No 11
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.9e-62 Score=483.78 Aligned_cols=269 Identities=41% Similarity=0.791 Sum_probs=254.5
Q ss_pred hchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHH
Q psy11688 157 KLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVEC 236 (546)
Q Consensus 157 ~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~ 236 (546)
.+...++..+++++.+++.++|.++++..| +.++||+||++.++.++++..++++. +.++|||||||||++|.|+
T Consensus 24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~ev 98 (294)
T PTZ00244 24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPY-SNYLFLGDYVDRGKHSVET 98 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCc-ccEEEeeeEecCCCCHHHH
Confidence 356678899999999999999999999876 99999999999999999999988754 4599999999999999999
Q ss_pred HHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCC
Q psy11688 237 IFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVT 316 (546)
Q Consensus 237 l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~ 316 (546)
+.+++++|+.+|.+++++|||||.+.++..|||.+|+..+|+..+|..+.++|++||++++++++++|||||+ +|...+
T Consensus 99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~ 177 (294)
T PTZ00244 99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS 177 (294)
T ss_pred HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred hhhhhccCCCCCCCCchhhhhhhcCCCCC-CCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCe
Q psy11688 317 LEDIRTIDRNRQPPDEGLMCELLWSDPQI-PNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGR 395 (546)
Q Consensus 317 ~~~i~~~~r~~~~~~~~~~~dllWsdp~~-~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~ 395 (546)
+++++.++||.+.+.+++++|+|||||.. ..+|.+++||.|+.||++++++||++||+++||||||++++||++.++++
T Consensus 178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~ 257 (294)
T PTZ00244 178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQ 257 (294)
T ss_pred HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCe
Confidence 99999999999888999999999999986 46889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEee
Q psy11688 396 CITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEA 432 (546)
Q Consensus 396 ~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 432 (546)
|+|||||||||+..+|+||+|.| +++++++|++|.+
T Consensus 258 ~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~f~~~~~ 293 (294)
T PTZ00244 258 LVTVFSAPNYCGEFDNDAAVMNI-DDKLQCSFLIIPA 293 (294)
T ss_pred EEEEeCCccccCCCCceEEEEEE-CCCCcEeEEEeec
Confidence 99999999999999999999999 7788999988764
No 12
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=5.5e-62 Score=481.55 Aligned_cols=267 Identities=42% Similarity=0.822 Sum_probs=253.8
Q ss_pred chHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHH
Q psy11688 158 LHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECI 237 (546)
Q Consensus 158 l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l 237 (546)
+..+++.++++++.+++.++|.++++..+ +.++||+||++.++.++++..++++. +.++|||||||||++++|++
T Consensus 23 ~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~e~i 97 (293)
T cd07414 23 LTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE-SNYLFLGDYVDRGKQSLETI 97 (293)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCc-ceEEEEeeEecCCCCcHHHH
Confidence 56688999999999999999999998765 99999999999999999999988754 56999999999999999999
Q ss_pred HHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCCh
Q psy11688 238 FTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTL 317 (546)
Q Consensus 238 ~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~ 317 (546)
.+++++|+.+|.++++||||||.+.++..|||..|+..+|+..+|..+.++|++||++++++++++|||||+ +|...++
T Consensus 98 ~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~l 176 (293)
T cd07414 98 CLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQSM 176 (293)
T ss_pred HHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCcH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred hhhhccCCCCCCCCchhhhhhhcCCCCC-CCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeE
Q psy11688 318 EDIRTIDRNRQPPDEGLMCELLWSDPQI-PNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRC 396 (546)
Q Consensus 318 ~~i~~~~r~~~~~~~~~~~dllWsdp~~-~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~ 396 (546)
++|+.++||.+.+.+++++|+|||||.. ..+|.+++||.|+.||++++++||++||+++||||||++++||++.++++|
T Consensus 177 ~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~ 256 (293)
T cd07414 177 EQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQL 256 (293)
T ss_pred HHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCcE
Confidence 9999999999888999999999999986 467899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEe
Q psy11688 397 ITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYE 431 (546)
Q Consensus 397 itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~ 431 (546)
||||||||||+..+|+||+|.| +++++++|++|+
T Consensus 257 iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~~~~~~ 290 (293)
T cd07414 257 VTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILK 290 (293)
T ss_pred EEEecCCcccCCCCceEEEEEE-CCCCcEEEEEec
Confidence 9999999999999999999999 678888998886
No 13
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.3e-61 Score=486.92 Aligned_cols=286 Identities=40% Similarity=0.736 Sum_probs=257.3
Q ss_pred hhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHH
Q psy11688 156 GKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVE 235 (546)
Q Consensus 156 ~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e 235 (546)
..++...+..++.++.+++.++|+++++..+...+++++||+||++.+|.++++..++++.++.++|||||||||++|+|
T Consensus 33 ~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlE 112 (377)
T cd07418 33 SVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLE 112 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHH
Confidence 44677889999999999999999999998655566999999999999999999999988766779999999999999999
Q ss_pred HHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhch---HHHHHHHHHhhccccceeeecceEEEEeCCcc--
Q psy11688 236 CIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYT---DLMAQFFTEVYNWLPLCHCINNKVLVMHGGLF-- 310 (546)
Q Consensus 236 ~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~-- 310 (546)
++.+++++++.+|.+|++||||||.+.++..|||..|+..+|+ ..+|+.+.++|++||++++++++++||||||+
T Consensus 113 vl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~ 192 (377)
T cd07418 113 TFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRS 192 (377)
T ss_pred HHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHHHHHHhCCcEEEECCCEEEECCCcCCc
Confidence 9999999999999999999999999999999999999999995 47999999999999999999999999999994
Q ss_pred ------------------------CCCCCChhhhhccCCC-CCCCCch---hhhhhhcCCCCCCCCCCCC-CCCCeeeeC
Q psy11688 311 ------------------------SSDNVTLEDIRTIDRN-RQPPDEG---LMCELLWSDPQIPNGRAPS-KRGVGVHFG 361 (546)
Q Consensus 311 ------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~dllWsdp~~~~~~~~~-~rg~~~~fg 361 (546)
+|...++++|++++|+ .+++.++ +++|+|||||....++.++ .||.|+.||
T Consensus 193 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~dlLWSDP~~~~g~~~~~~RG~g~~FG 272 (377)
T cd07418 193 PSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPGDVLWSDPSLTPGLSPNKQRGIGLLWG 272 (377)
T ss_pred ccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccceeeEeeCCccCCCCCccCCCCCccccC
Confidence 3345789999999997 4565554 4789999999988887776 799999999
Q ss_pred HHHHHHHHHhcCCcEEEEeccc------------cccCceEeCC---CeEEEEeCCCCCC------CCCCCceeEEEeeC
Q psy11688 362 PDVTKAFLERNKLEYIIRSHEV------------KQDGYEVAHD---GRCITVFSAPNYC------DSVGNKGAFITMKG 420 (546)
Q Consensus 362 ~~~~~~fl~~~~~~~iir~H~~------------~~~G~~~~~~---~~~itifsa~~y~------~~~~n~~a~~~~~~ 420 (546)
++++++||++|++++||||||+ +++||++.++ ++|+||||||||| +.++|+||+++|..
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~ 352 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDYPQFQATEERYNNKGAYIILQP 352 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEecCCccccccccccccCcceEEEEEec
Confidence 9999999999999999999996 6799999887 9999999999999 57899999999966
Q ss_pred CC-CceeEEEEeec-CCCCCCCC
Q psy11688 421 KD-MVPHFTTYEAV-GVSPPEPA 441 (546)
Q Consensus 421 ~~-~~~~~~~~~~~-~~~~~~p~ 441 (546)
++ ..++|+||.++ |+|+..|.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T cd07418 353 PDFSDPQFHTFEAVKPRPKANPY 375 (377)
T ss_pred CCCCCccceEeeccCCCCCCCcC
Confidence 55 58999999998 77776553
No 14
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=2.8e-61 Score=473.54 Aligned_cols=267 Identities=49% Similarity=0.926 Sum_probs=252.5
Q ss_pred hHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHH
Q psy11688 159 HRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIF 238 (546)
Q Consensus 159 ~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~ 238 (546)
+++++.++++++.+++.++|.++++..+ ++++||+||++.++.++++..+.++ .+.++|||||||||+++.|++.
T Consensus 2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~ 76 (271)
T smart00156 2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL 76 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence 3567889999999999999999998755 9999999999999999999988764 5579999999999999999999
Q ss_pred HHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChh
Q psy11688 239 TLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLE 318 (546)
Q Consensus 239 ~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~ 318 (546)
+++++|+.+|.+++++|||||.+.++..|||..|+..+|+..+|+.+.++|++||++++++++++|||||+ +|...+++
T Consensus 77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~ 155 (271)
T smart00156 77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD 155 (271)
T ss_pred HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred hhhccCCCCCCCCchhhhhhhcCCCC-CCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEE
Q psy11688 319 DIRTIDRNRQPPDEGLMCELLWSDPQ-IPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCI 397 (546)
Q Consensus 319 ~i~~~~r~~~~~~~~~~~dllWsdp~-~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~i 397 (546)
+|++++||.+.+.+++++|+|||||. ...+|.+++||.|+.||++++++||++||+++||||||++++||++.++++|+
T Consensus 156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 235 (271)
T smart00156 156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV 235 (271)
T ss_pred HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence 99999999988999999999999995 45788999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEee
Q psy11688 398 TVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEA 432 (546)
Q Consensus 398 tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 432 (546)
|||||||||+..+|+||++.| +++.+++|.+|++
T Consensus 236 TvfSa~~y~~~~~n~~a~~~i-~~~~~~~~~~~~~ 269 (271)
T smart00156 236 TIFSAPNYCGRFGNKAAVLKV-DKDLKLSFEQFKP 269 (271)
T ss_pred EEECCcccccCCCceEEEEEE-CCCCcEEEEEecC
Confidence 999999999989999999999 6788999998863
No 15
>KOG0375|consensus
Probab=100.00 E-value=2.5e-62 Score=466.35 Aligned_cols=284 Identities=39% Similarity=0.707 Sum_probs=264.5
Q ss_pred hhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCC
Q psy11688 152 MQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGS 231 (546)
Q Consensus 152 ~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~ 231 (546)
...+.++.++.+.+++.++..+++++++++++..| +.|+|||||++-||.++|+-.|.|..+ +|+|||||||||.
T Consensus 55 f~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~PA~t-~YLFLGDYVDRGy 129 (517)
T KOG0375|consen 55 FIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSPANT-RYLFLGDYVDRGY 129 (517)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCcccc-eeEeeccccccce
Confidence 33467788899999999999999999999999988 999999999999999999998877555 5999999999999
Q ss_pred ChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccC
Q psy11688 232 FSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFS 311 (546)
Q Consensus 232 ~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~ 311 (546)
.|+|++.+|.+||+.+|..+++||||||++.++..+.|+.||..||+.++|+.+.+.|+.||++|+.+++++|||||+ |
T Consensus 130 FSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQflCVHGGl-S 208 (517)
T KOG0375|consen 130 FSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFLCVHGGL-S 208 (517)
T ss_pred eeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceEEecCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCC--------CCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccc
Q psy11688 312 SDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNG--------RAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEV 383 (546)
Q Consensus 312 ~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~--------~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~ 383 (546)
|...+++||++++|+++||.-+++||+|||||.+.-| ..++.||+++.|...++.+||+.||+--|||+||.
T Consensus 209 PEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLLSIiRAHEA 288 (517)
T KOG0375|consen 209 PEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLLSIIRAHEA 288 (517)
T ss_pred cccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCchhhhhhhhh
Confidence 9999999999999999999999999999999986422 24678999999999999999999999999999999
Q ss_pred cccCceEeCCC------eEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCCCCCCCcc
Q psy11688 384 KQDGYEVAHDG------RCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEPALE 443 (546)
Q Consensus 384 ~~~G~~~~~~~------~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 443 (546)
++.||..+.+. .+|||||||||.+.++|++|||..+ +...+|.||.++|||++.|...
T Consensus 289 QDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYE--nNVMNIRQFncSPHPYWLPnFM 352 (517)
T KOG0375|consen 289 QDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYE--NNVMNIRQFNCSPHPYWLPNFM 352 (517)
T ss_pred hhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhh--cccceeeccCCCCCCccccchh
Confidence 99999987664 4899999999999999999999994 3456788999999999987654
No 16
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=2.5e-58 Score=460.97 Aligned_cols=269 Identities=37% Similarity=0.678 Sum_probs=246.6
Q ss_pred hchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCC-------CCCeeeecccccc
Q psy11688 157 KLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSP-------DNPYLFNGDFVDR 229 (546)
Q Consensus 157 ~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~-------~~~~~~lGD~vdr 229 (546)
.+..+++..+++++.++++++|.++++..+ +.++||+||++++|.++++..++++. ...++|+||||||
T Consensus 20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR 95 (311)
T cd07419 20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR 95 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence 356788999999999999999999999765 99999999999999999999887754 2469999999999
Q ss_pred CCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchH------HHHHHHHHhhccccceeeecceEE
Q psy11688 230 GSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTD------LMAQFFTEVYNWLPLCHCINNKVL 303 (546)
Q Consensus 230 G~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~lP~~~~~~~~~~ 303 (546)
|++|+|++.++++++..+|.++++||||||.+.++..+||..++..+++. .+|..+.++|++||++++++++++
T Consensus 96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l 175 (311)
T cd07419 96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL 175 (311)
T ss_pred CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence 99999999999999999999999999999999999999999999888854 689999999999999999999999
Q ss_pred EEeCCccCCCCCChhhhhccCCCC-CCCCchhhhhhhcCCCCCC---CCCCCCC---CCCe--eeeCHHHHHHHHHhcCC
Q psy11688 304 VMHGGLFSSDNVTLEDIRTIDRNR-QPPDEGLMCELLWSDPQIP---NGRAPSK---RGVG--VHFGPDVTKAFLERNKL 374 (546)
Q Consensus 304 ~vHgGi~~~~~~~~~~i~~~~r~~-~~~~~~~~~dllWsdp~~~---~~~~~~~---rg~~--~~fg~~~~~~fl~~~~~ 374 (546)
|||||+ +|...++++|+.+.||. .++.++++.|++||||... .++.+++ ||.| +.||++++++||++||+
T Consensus 176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l 254 (311)
T cd07419 176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL 254 (311)
T ss_pred EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence 999999 88999999999999986 5566788999999999864 3566665 9998 69999999999999999
Q ss_pred cEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEe
Q psy11688 375 EYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYE 431 (546)
Q Consensus 375 ~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~ 431 (546)
++||||||++++||++.++++|+|||||||||+.++|.||+++| +++++++|+.+.
T Consensus 255 ~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i-~~~~~~~~~~~~ 310 (311)
T cd07419 255 QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVL-GRDLTIIPKLIH 310 (311)
T ss_pred eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeC
Confidence 99999999999999999999999999999999999999999999 778888888764
No 17
>KOG0371|consensus
Probab=100.00 E-value=6e-59 Score=426.13 Aligned_cols=290 Identities=37% Similarity=0.673 Sum_probs=268.6
Q ss_pred hhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccc
Q psy11688 147 KIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDF 226 (546)
Q Consensus 147 ~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~ 226 (546)
..+.+.-..+.+.+..+..++..++++|.+++++..+..| +.++||+||++.++.++++..|..++.+ |+|+|||
T Consensus 22 ~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdtn-ylfmGDy 96 (319)
T KOG0371|consen 22 PWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDTN-YLFMGDY 96 (319)
T ss_pred cchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCcc-eeeeeee
Confidence 3344444456677788889999999999999999998877 9999999999999999998888776665 9999999
Q ss_pred cccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhc-hHHHHHHHHHhhccccceeeecceEEEE
Q psy11688 227 VDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY-TDLMAQFFTEVYNWLPLCHCINNKVLVM 305 (546)
Q Consensus 227 vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~lP~~~~~~~~~~~v 305 (546)
||||++|.|++.++.++|++||++|.+||||||.+.+...|||++||.+|| ...+|..|.+.|+.+|+.+.|+++|||.
T Consensus 97 vdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~ 176 (319)
T KOG0371|consen 97 VDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCL 176 (319)
T ss_pred cccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccceeec
Confidence 999999999999999999999999999999999999999999999999999 6789999999999999999999999999
Q ss_pred eCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccc
Q psy11688 306 HGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQ 385 (546)
Q Consensus 306 HgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~ 385 (546)
|||+ ||...+++.++.++|..+.|.++.++|+|||||+...+|..++||.|+.||.+..++|-.+||+++|-|+||.++
T Consensus 177 HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRahqlvm 255 (319)
T KOG0371|consen 177 HGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAHQLVM 255 (319)
T ss_pred cCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHHHHHh
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecCCCCCCCCccc
Q psy11688 386 DGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEPALEN 444 (546)
Q Consensus 386 ~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~ 444 (546)
+||.|.+...++|||||||||+.++|.+|++.+ +......|.||+++|. ..+|.++.
T Consensus 256 ~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~-d~~~~~~f~q~~psp~-k~e~~vtr 312 (319)
T KOG0371|consen 256 EGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMER-DDTKNYDFLQFDPSPR-KVEPDVTR 312 (319)
T ss_pred cccceeeecceeEEccCCchhhccccHHHHhhh-hhccCcceEEecCCcc-cccccccc
Confidence 999999999999999999999999999999999 6788899999998643 34455543
No 18
>KOG0377|consensus
Probab=100.00 E-value=1.3e-56 Score=437.11 Aligned_cols=287 Identities=44% Similarity=0.843 Sum_probs=261.7
Q ss_pred chhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeec
Q psy11688 145 CNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNG 224 (546)
Q Consensus 145 ~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lG 224 (546)
+...++..+..+.++..++..++.++++.+++.|++-.++....+.+.++||+||.++||.-+|-+.|.|...+.|+|.|
T Consensus 121 i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvFNG 200 (631)
T KOG0377|consen 121 IDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNPYVFNG 200 (631)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCCCeeecC
Confidence 44556666667789999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhc---hHHHHHHHHHhhccccceeeecce
Q psy11688 225 DFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY---TDLMAQFFTEVYNWLPLCHCINNK 301 (546)
Q Consensus 225 D~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~lP~~~~~~~~ 301 (546)
|+||||.+|+|++..|+++-+.+|..+++-|||||...||..|||..|+..+| +..+...+.++|.|||++.+++.+
T Consensus 201 DFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~k~Ilr~leevy~WLPi~tiid~~ 280 (631)
T KOG0377|consen 201 DFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHGKRILRFLEEVYRWLPIGTIIDSR 280 (631)
T ss_pred chhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcccHHHHHHHHHHHhcchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999 678899999999999999999999
Q ss_pred EEEEeCCccCCCCCChhhhhccCCCC-----CCCC-----------------chhhhhhhcCCCCCCCCCCCC-CCCCee
Q psy11688 302 VLVMHGGLFSSDNVTLEDIRTIDRNR-----QPPD-----------------EGLMCELLWSDPQIPNGRAPS-KRGVGV 358 (546)
Q Consensus 302 ~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~~-----------------~~~~~dllWsdp~~~~~~~~~-~rg~~~ 358 (546)
+++||||+ | +.+.++-+.+|+|.. .||. ..-+.|++||||....|+.|| -||.|+
T Consensus 281 ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~~~~GC~pNt~RGgG~ 358 (631)
T KOG0377|consen 281 ILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQATMGCVPNTLRGGGC 358 (631)
T ss_pred eEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcccccCCCcccccCCcc
Confidence 99999999 4 456677777777641 1111 234678999999999887766 699999
Q ss_pred eeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCCCCceeEEEEeecC
Q psy11688 359 HFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVG 434 (546)
Q Consensus 359 ~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~ 434 (546)
+||+|++..||++.+++++||+|||.++||+++||++|+|||||+||.....|+||++.+ ++.++|.|.||.+..
T Consensus 359 yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl-~~~~~PhfvQY~a~k 433 (631)
T KOG0377|consen 359 YFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKL-GNQLTPHFVQYQAAK 433 (631)
T ss_pred eeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEe-CCCCCchHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999 889999999999754
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=3.1e-30 Score=249.65 Aligned_cols=213 Identities=43% Similarity=0.728 Sum_probs=173.3
Q ss_pred ccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchh
Q psy11688 192 TVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEG 271 (546)
Q Consensus 192 ~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~ 271 (546)
+++||+||++++|.++++..+.+ ..+.++++||++|||+.+.+++.++..++.. |.++++|+||||.+.+....++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~-~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~ 78 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFP-PNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD 78 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCC-CCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence 47999999999999999998775 4567999999999999999999999998877 889999999999999887776554
Q ss_pred hh---------hhhchHHHHHHHHHhhccccceeeecc-eEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcC
Q psy11688 272 EV---------KSKYTDLMAQFFTEVYNWLPLCHCINN-KVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWS 341 (546)
Q Consensus 272 e~---------~~~~~~~~~~~~~~~~~~lP~~~~~~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWs 341 (546)
+. ........+..+.+++..||+++.++. +++|||||+ +|......+.. ..+.+....+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~ 151 (225)
T cd00144 79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS 151 (225)
T ss_pred hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence 32 222345677888899999999999986 999999999 65554443333 22344567889999
Q ss_pred CCCCCCCC-CCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEE
Q psy11688 342 DPQIPNGR-APSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFIT 417 (546)
Q Consensus 342 dp~~~~~~-~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~ 417 (546)
||...... ..+.++. |+++++.|+..++.+.|||||+++..|+.....++++||+|++.|++..+|..+++.
T Consensus 152 r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~ 224 (225)
T cd00144 152 DPLELPGGFGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALV 224 (225)
T ss_pred CCCCCCCCCcCCCCCC----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCccEEEEe
Confidence 99865432 2333443 999999999999999999999999999877788999999999999877777777654
No 20
>KOG0372|consensus
Probab=99.95 E-value=7.1e-29 Score=226.87 Aligned_cols=94 Identities=23% Similarity=0.361 Sum_probs=86.7
Q ss_pred hhhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC-
Q psy11688 449 LKFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC- 527 (546)
Q Consensus 449 ~~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh- 527 (546)
++.+..+-.|.+.|||+||| ++.|+++++.+|.+|+++|+|||||||||.+|+|++++|+++|++||++|+++||||
T Consensus 35 E~NV~~i~tPvtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHE 112 (303)
T KOG0372|consen 35 ESNVQRIDTPVTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHE 112 (303)
T ss_pred CCCceecCCCcEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccch
Confidence 34455556677899999999 677999999999999999999999999999999999999999999999999999999
Q ss_pred ---cccccchhhhccccccc
Q psy11688 528 ---IFTLFGFKLLYPNHFFM 544 (546)
Q Consensus 528 ---~~~~~gf~~e~~~~~~~ 544 (546)
+|++||||+||.+||-+
T Consensus 113 sRqitqvYGFY~EclrKYG~ 132 (303)
T KOG0372|consen 113 SRQITQVYGFYDECLRKYGS 132 (303)
T ss_pred hhhhhhhhhHHHHHHHHcCC
Confidence 99999999999999864
No 21
>KOG0373|consensus
Probab=99.94 E-value=1.5e-27 Score=214.48 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=81.8
Q ss_pred hhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----ccccc
Q psy11688 457 QTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLF 532 (546)
Q Consensus 457 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~ 532 (546)
.+.+.||||||| ++.|+++|+.+|.-|+++|||+|||||||.+|+|++.+|++||.+||.+|++||||| |+++|
T Consensus 46 tPVTvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVY 123 (306)
T KOG0373|consen 46 TPVTVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVY 123 (306)
T ss_pred CCeeEeeccchh--HHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhh
Confidence 445799999999 667999999999999999999999999999999999999999999999999999999 99999
Q ss_pred chhhhccccccc
Q psy11688 533 GFKLLYPNHFFM 544 (546)
Q Consensus 533 gf~~e~~~~~~~ 544 (546)
||||||.+||-+
T Consensus 124 GFydECq~KYGn 135 (306)
T KOG0373|consen 124 GFYDECQNKYGN 135 (306)
T ss_pred hhHHHHHhhcCC
Confidence 999999999865
No 22
>KOG0371|consensus
Probab=99.90 E-value=5.4e-25 Score=202.85 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=85.8
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
..+.++..+...|||+||| ++.|+++++.+|..|+++|+|+|||||||++|.|||.+|+++|++||++|.+|||||
T Consensus 53 ~nV~~v~~pvtvcGDvHGq--f~dl~ELfkiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 53 ENVQPVNCPVTVCGDVHGQ--FHDLIELFKIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred ccccccccceEEecCcchh--HHHHHHHHHccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHH
Confidence 4555566677899999999 677999999999999999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhcccccc
Q psy11688 528 --IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~ 543 (546)
|+++|||||||.||+-
T Consensus 131 rqitqvygfydeclRkyg 148 (319)
T KOG0371|consen 131 RQITQVYGFYDECLRKYG 148 (319)
T ss_pred HHHHHHHhhHHHHHhhcc
Confidence 9999999999999983
No 23
>KOG0374|consensus
Probab=99.89 E-value=2.3e-24 Score=214.87 Aligned_cols=94 Identities=28% Similarity=0.439 Sum_probs=86.1
Q ss_pred hhhhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcC-CCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCC
Q psy11688 448 TLKFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKI-LNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVE 526 (546)
Q Consensus 448 ~~~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgn 526 (546)
.++.+.++..+.+.+||+|||| ..|++++...+ .||+.+|||||||||||++|+||+++|+++|++||++||+||||
T Consensus 50 ~~~~l~e~~aPV~i~GDiHGq~--~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGN 127 (331)
T KOG0374|consen 50 SQPTLLELSAPVKIVGDIHGQF--GDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGN 127 (331)
T ss_pred CCCceeecCCCEEEEccCcCCH--HHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccc
Confidence 4445556667889999999995 46999999998 99999999999999999999999999999999999999999999
Q ss_pred C----cccccchhhhcccccc
Q psy11688 527 C----IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 527 h----~~~~~gf~~e~~~~~~ 543 (546)
| +|+.|||+|||.+||.
T Consensus 128 HE~~~in~~yGFydE~~rr~~ 148 (331)
T KOG0374|consen 128 HECASINRIYGFYDECKRRYG 148 (331)
T ss_pred cccccccceeeeHHHHHHhcc
Confidence 9 9999999999999974
No 24
>KOG0375|consensus
Probab=99.88 E-value=5.6e-24 Score=204.14 Aligned_cols=93 Identities=29% Similarity=0.492 Sum_probs=85.7
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
+.+.++..++++||||||||. .|+.+|+.+|.|.+++|+|||||||||.+|+|++++|.+||+.||..+++|||||
T Consensus 81 knmi~v~APiTVCGDIHGQf~--DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHEC 158 (517)
T KOG0375|consen 81 KNMIEVEAPITVCGDIHGQFF--DLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHEC 158 (517)
T ss_pred CceEeccCCeeEecccchHHH--HHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcch
Confidence 456666777889999999964 5999999999999999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhccccccc
Q psy11688 528 --IFTLFGFKLLYPNHFFM 544 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~~ 544 (546)
.++++.|+.||.-||.+
T Consensus 159 rHLT~YFTFKqEc~iKYse 177 (517)
T KOG0375|consen 159 RHLTEYFTFKQECKIKYSE 177 (517)
T ss_pred hhhHhHhhHHHHHhHhccH
Confidence 88999999999988764
No 25
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.88 E-value=3.9e-22 Score=189.36 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=129.9
Q ss_pred ccccccchhHhhHHHHHHHhCC-------CCCCCCeeeeccccccCCChHHHHHHHhhhhhc---CCCeEEEEccccccc
Q psy11688 192 TVCGDIHGQFYDLMNIFELNGL-------PSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLL---YPNHFFMARGNHESA 261 (546)
Q Consensus 192 ~viGDihg~~~~l~~il~~~~~-------~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~---~p~~v~~lrGNHE~~ 261 (546)
+++||+||+++.|.++++..+. ....+.++++||+||||+++.+++++++++... .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4799999999999999998764 235678999999999999999999999998753 457899999999999
Q ss_pred hhhhhhcchh--hhhhhch-----HHHH---HHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCC
Q psy11688 262 YMNQIYGFEG--EVKSKYT-----DLMA---QFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPD 331 (546)
Q Consensus 262 ~~~~~~~~~~--e~~~~~~-----~~~~---~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~ 331 (546)
.+...+.+.. +...... ...+ ..+.+|+..+|+...++ +++|||||+ +
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~-------------------- 138 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-G-------------------- 138 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-H--------------------
Confidence 9875543321 1111000 1111 23468999999999887 699999998 2
Q ss_pred chhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCC
Q psy11688 332 EGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSA 402 (546)
Q Consensus 332 ~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa 402 (546)
.+|++.-.... ... .-|...+.++++.++.++||+||+.++.|....+++++|+|.++
T Consensus 139 ------~~w~r~y~~~~--~~~-----~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 139 ------PLWYRGYSKET--SDK-----ECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred ------HHHhhHhhhhh--hhc-----cchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 23432211000 000 01225688999999999999999999888767899999999974
No 26
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.85 E-value=5.2e-21 Score=186.59 Aligned_cols=120 Identities=24% Similarity=0.490 Sum_probs=95.2
Q ss_pred ccccccccchhHhhHHHHHHHhCCC--------CCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLP--------SPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~--------~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
++.++|||||+++.|.+++++.++. +..+.++|+|||||||++|.+|+++++++. .+.++++|+||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 3789999999999999999998764 346789999999999999999999998874 456899999999999
Q ss_pred hhhhhhcch-------hhhhhhc-------hHHHHHHHHHhhccccceeeec-ceEEEEeCCccCC
Q psy11688 262 YMNQIYGFE-------GEVKSKY-------TDLMAQFFTEVYNWLPLCHCIN-NKVLVMHGGLFSS 312 (546)
Q Consensus 262 ~~~~~~~~~-------~e~~~~~-------~~~~~~~~~~~~~~lP~~~~~~-~~~~~vHgGi~~~ 312 (546)
+++...+.. .+....| ...+.+.+.++++.+|++..++ ++++|||||+ .|
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~-~~ 144 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI-RQ 144 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC-Ch
Confidence 887653211 1111122 2346677889999999998774 5799999999 44
No 27
>KOG0376|consensus
Probab=99.83 E-value=1.9e-21 Score=196.30 Aligned_cols=284 Identities=25% Similarity=0.238 Sum_probs=190.5
Q ss_pred hchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHH
Q psy11688 157 KLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVEC 236 (546)
Q Consensus 157 ~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~ 236 (546)
.+.......++..+.+++..+|+...+...++...+.+++.||++.|+.++++.. |.....|++-|++++++....++
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHH
Confidence 4555667788889999999999999988888888999999999999999999974 55566799999999999999999
Q ss_pred HHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCC
Q psy11688 237 IFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVT 316 (546)
Q Consensus 237 l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~ 316 (546)
+..+...+...|+...+.|++||+..+...++|..+....+ |.++.....
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~------------------------------~d~~s~~~~ 141 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPE------------------------------GDKKSVVEM 141 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCc------------------------------cCCcccccc
Confidence 99999999999999999999999999888888875443222 111100000
Q ss_pred hhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeE
Q psy11688 317 LEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRC 396 (546)
Q Consensus 317 ~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~ 396 (546)
.-++..+ +++=+++. |. ++-.++.+.+|.+..-
T Consensus 142 ~~~~~~~-------------~~i~~~y~----------g~-~le~~kvt~e~vk~~~----------------------- 174 (476)
T KOG0376|consen 142 KIDEEDM-------------DLIESDYS----------GP-VLEDHKVTLEFVKTLM----------------------- 174 (476)
T ss_pred ccccccc-------------cccccccC----------Cc-ccccchhhHHHHHHHH-----------------------
Confidence 0000000 00001100 00 0001145555554432
Q ss_pred EEEeCCCCCCCCCCCceeEEEee-CCCCceeEEEEeecCCCCCCCCccchhhhhhhhhhhhhhhHhhCcchhhhHHHHHH
Q psy11688 397 ITVFSAPNYCDSVGNKGAFITMK-GKDMVPHFTTYEAVGVSPPEPALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILM 475 (546)
Q Consensus 397 itifsa~~y~~~~~n~~a~~~~~-~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~l~~l~~~f~~~~~~~~~~~~~~l~ 475 (546)
++| + | +-.+.-. -..+.....++... .|.+.+. . ..--..+.+|||.||| ++.++
T Consensus 175 -~~~-----~----~-~~~L~~k~a~~i~~~~~~~~~~-----l~~~ve~----~--~~~d~~~sv~gd~hGq--fydl~ 230 (476)
T KOG0376|consen 175 -EVF-----K----N-QKKLPKKYAYSILDLAKTILRK-----LPSLVEI----S--VPGDVKISVCGDTHGQ--FYDLL 230 (476)
T ss_pred -Hhh-----h----c-ccccccccceeeHHHHhhHHhc-----CCcceEe----e--cCCCceEEecCCcccc--ccchh
Confidence 000 0 0 0000000 00011111111100 0111111 0 1111345789999999 55688
Q ss_pred HHHHhcC-CCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccccchhhhcccccc
Q psy11688 476 DIKKKKI-LNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 476 ~~~~~~~-~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~gf~~e~~~~~~ 543 (546)
+++...| +++++.|+|+||+||||.+|+||++.++++|+.+|+++|++|||| ||+.|||-+|+..+++
T Consensus 231 nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyt 303 (476)
T KOG0376|consen 231 NIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYT 303 (476)
T ss_pred hhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhH
Confidence 8887655 556889999999999999999999999999999999999999999 9999999999988764
No 28
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.82 E-value=7.9e-20 Score=175.46 Aligned_cols=116 Identities=23% Similarity=0.303 Sum_probs=90.5
Q ss_pred cccccccchhHhhHHHHHHHhCCC-------CCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchh
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLP-------SPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~-------~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~ 263 (546)
++++|||||+++.|.+++++.++. +..+.++|+||||||||+|.+|+++++++.. +.++++|+||||.+++
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll 78 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAI 78 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHH
Confidence 368999999999999999998664 2356899999999999999999999998863 4589999999999988
Q ss_pred hhhhcch-----------------hhhhhhc--hHHHHHHHHHhhccccceeeecceEEEEeCCc
Q psy11688 264 NQIYGFE-----------------GEVKSKY--TDLMAQFFTEVYNWLPLCHCINNKVLVMHGGL 309 (546)
Q Consensus 264 ~~~~~~~-----------------~e~~~~~--~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi 309 (546)
....+.. .+..+.+ ..+..+.+.++++.||+....+ +++|||||+
T Consensus 79 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~ 142 (222)
T cd07413 79 AWHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACW 142 (222)
T ss_pred HhhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEEC-CEEEEECCc
Confidence 6543210 0111111 1234567889999999998875 799999998
No 29
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.82 E-value=3e-20 Score=180.60 Aligned_cols=148 Identities=19% Similarity=0.298 Sum_probs=108.9
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcch
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFE 270 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 270 (546)
++++|||||+++.|++++++.++.+..+.++|+||+|||||+|.||++++.+++ .++++|+||||.+.+...+|..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 368999999999999999999877677889999999999999999999999886 5799999999999988766643
Q ss_pred hhh-----hhhchHHHHHHHHHhhccccceeeecc-eEEEEeCCccCCCCCChhhhhccCCC-----CCCCCchhhhhhh
Q psy11688 271 GEV-----KSKYTDLMAQFFTEVYNWLPLCHCINN-KVLVMHGGLFSSDNVTLEDIRTIDRN-----RQPPDEGLMCELL 339 (546)
Q Consensus 271 ~e~-----~~~~~~~~~~~~~~~~~~lP~~~~~~~-~~~~vHgGi~~~~~~~~~~i~~~~r~-----~~~~~~~~~~dll 339 (546)
..- .+.......+.+.+++..+|+...+++ ++++||||+ +|.+ ++++.....+. ..+........+.
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~w-~~~~~~~~a~eve~~l~~~~~~~~~~~my 154 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQW-SIEQALKLAREVEAALRGPNYREFLKNMY 154 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHhh
Confidence 211 111112223567799999999998875 899999999 6665 44443332221 1122234555666
Q ss_pred cCCCC
Q psy11688 340 WSDPQ 344 (546)
Q Consensus 340 Wsdp~ 344 (546)
|+.|.
T Consensus 155 ~~~p~ 159 (257)
T cd07422 155 GNEPD 159 (257)
T ss_pred CCCCc
Confidence 66664
No 30
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.82 E-value=8.5e-20 Score=179.40 Aligned_cols=214 Identities=15% Similarity=0.235 Sum_probs=139.9
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcch
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFE 270 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 270 (546)
++++|||||+++.|.+++++.++.+..+.++++||+|||||+|.+|++++.++ +.++++|+||||.+++...+|..
T Consensus 3 ~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~~ 78 (275)
T PRK00166 3 TYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGIK 78 (275)
T ss_pred EEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCCc
Confidence 78999999999999999999887666788999999999999999999999887 35799999999999988776643
Q ss_pred hh-----hhhhchHHHHHHHHHhhccccceeee-cceEEEEeCCccCCCCCChhhhhcc----CCCCC-CCCchhhhhhh
Q psy11688 271 GE-----VKSKYTDLMAQFFTEVYNWLPLCHCI-NNKVLVMHGGLFSSDNVTLEDIRTI----DRNRQ-PPDEGLMCELL 339 (546)
Q Consensus 271 ~e-----~~~~~~~~~~~~~~~~~~~lP~~~~~-~~~~~~vHgGi~~~~~~~~~~i~~~----~r~~~-~~~~~~~~dll 339 (546)
.. +.+.......+.+.+++..+|+...+ ++++++||||+ +|.+ ++++.... ..... +........+.
T Consensus 79 ~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~~-~~~~~~~~a~eve~~l~~~~~~~~~~~my 156 (275)
T PRK00166 79 RNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQW-DLATALALAREVEAVLRSDDYRDFLANMY 156 (275)
T ss_pred cccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHhc
Confidence 21 11111122345577999999998886 56899999999 6655 33322111 11111 11223555666
Q ss_pred cCCCCCCCCCCCCCCCCe-eeeCHHHH--HHHHHhcC-----------------------------CcEEEEeccccccC
Q psy11688 340 WSDPQIPNGRAPSKRGVG-VHFGPDVT--KAFLERNK-----------------------------LEYIIRSHEVKQDG 387 (546)
Q Consensus 340 Wsdp~~~~~~~~~~rg~~-~~fg~~~~--~~fl~~~~-----------------------------~~~iir~H~~~~~G 387 (546)
|+.|. .|.++-.|.. ..|.-.+. .+||...| -..||-||.....|
T Consensus 157 ~~~p~---~W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~G 233 (275)
T PRK00166 157 GNEPD---RWSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRDYTIVFGHWAALEG 233 (275)
T ss_pred CCCcC---ccCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCCCeEEEecCcccCC
Confidence 66563 2333322221 11111111 11222222 34799999998778
Q ss_pred ceEeCCCeEEEEeCCCCCCCCCCCceeEEEee
Q psy11688 388 YEVAHDGRCITVFSAPNYCDSVGNKGAFITMK 419 (546)
Q Consensus 388 ~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~ 419 (546)
... ...++.+-|.--+ ++.=..+.++
T Consensus 234 ~~~--~~~~~~LDtGcvw----gg~Lta~~l~ 259 (275)
T PRK00166 234 LTT--PPNIIALDTGCVW----GGKLTALRLE 259 (275)
T ss_pred ccC--CCCeEEeeccccc----CCeEEEEEeC
Confidence 865 4568888887544 3455567773
No 31
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=99.80 E-value=1.2e-20 Score=187.95 Aligned_cols=84 Identities=35% Similarity=0.483 Sum_probs=76.2
Q ss_pred hhHhhCcchhhhHHHHHHHHHHhcCCC-CCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----ccccc
Q psy11688 458 TYKAQGKLHRKYAYRILMDIKKKKILN-LDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLF 532 (546)
Q Consensus 458 ~f~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~ 532 (546)
++...|||||+ +..|+++++..+.+ ++++|||||||||||++|+||+.+|+++|+.||++|++||||| +|..|
T Consensus 52 ~~~vvGDiHG~--~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~y 129 (321)
T cd07420 52 QVTICGDLHGK--LDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRY 129 (321)
T ss_pred CeEEEEeCCCC--HHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhc
Confidence 56789999999 55699999877766 4578999999999999999999999999999999999999999 88999
Q ss_pred chhhhcccccc
Q psy11688 533 GFKLLYPNHFF 543 (546)
Q Consensus 533 gf~~e~~~~~~ 543 (546)
||++||.++|.
T Consensus 130 Gf~~e~~~~y~ 140 (321)
T cd07420 130 GFTKEVMSKYK 140 (321)
T ss_pred ChHHHHHHHhC
Confidence 99999998874
No 32
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.80 E-value=4.6e-19 Score=172.06 Aligned_cols=119 Identities=25% Similarity=0.438 Sum_probs=94.3
Q ss_pred ccccccccchhHhhHHHHHHHhCCCC---------CCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEcccccc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPS---------PDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHES 260 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~---------~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~ 260 (546)
++.++|||||++..|.++++..++.+ ..+.++|+||+||||++|.||++++++++. +.++++|+||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcHH
Confidence 47899999999999999999987653 246899999999999999999999998864 3579999999999
Q ss_pred chhhhhhcch-------hhhhhhc---hHHHHHHHHHhhccccceeeec-ceEEEEeCCcc
Q psy11688 261 AYMNQIYGFE-------GEVKSKY---TDLMAQFFTEVYNWLPLCHCIN-NKVLVMHGGLF 310 (546)
Q Consensus 261 ~~~~~~~~~~-------~e~~~~~---~~~~~~~~~~~~~~lP~~~~~~-~~~~~vHgGi~ 310 (546)
+.++...+.. .+....+ ...+.+.+.++++.||+...++ ++++|||||++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~ 140 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK 140 (234)
T ss_pred HHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence 9887543311 1111222 2446677889999999998775 57999999983
No 33
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.80 E-value=1.4e-19 Score=173.62 Aligned_cols=123 Identities=23% Similarity=0.291 Sum_probs=93.6
Q ss_pred ccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 182 HITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 182 ~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
.+......+++++|||||+++.|.++++..++.+..+.++++||+|||||+|.+|++++.+ .++++|+||||.+
T Consensus 10 ~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~ 83 (218)
T PRK11439 10 RIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQM 83 (218)
T ss_pred cccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHH
Confidence 3444455679999999999999999999988765677899999999999999999998865 2578999999999
Q ss_pred hhhhhhcchh--------hhhhhc---hHHHHHHHHHhhccccceeee---cceEEEEeCCcc
Q psy11688 262 YMNQIYGFEG--------EVKSKY---TDLMAQFFTEVYNWLPLCHCI---NNKVLVMHGGLF 310 (546)
Q Consensus 262 ~~~~~~~~~~--------e~~~~~---~~~~~~~~~~~~~~lP~~~~~---~~~~~~vHgGi~ 310 (546)
.++...+-.. +..... ....+....++++.||+...+ ++++++||||+|
T Consensus 84 ~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 84 ALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 9875432110 000011 112345566899999999765 357999999984
No 34
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.80 E-value=1.6e-19 Score=175.33 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=100.5
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcch
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFE 270 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 270 (546)
++++|||||+++.|.++++++.+.+..+.++|+||+|||||+|.+|+.++.++. .++++|+||||.+.+...+|+.
T Consensus 3 ~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~~ 78 (279)
T TIGR00668 3 TYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGIS 78 (279)
T ss_pred EEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCCC
Confidence 789999999999999999999877777889999999999999999999998874 4688999999999998887752
Q ss_pred -----hhhhhhchHHHHHHHHHhhccccceeeec-ceEEEEeCCccCCCCCChhhh
Q psy11688 271 -----GEVKSKYTDLMAQFFTEVYNWLPLCHCIN-NKVLVMHGGLFSSDNVTLEDI 320 (546)
Q Consensus 271 -----~e~~~~~~~~~~~~~~~~~~~lP~~~~~~-~~~~~vHgGi~~~~~~~~~~i 320 (546)
+.....+.....+.+.+++..+|+....+ .++++||||+ +|.+ ++++.
T Consensus 79 ~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~w-~l~~a 132 (279)
T TIGR00668 79 RNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQW-DLQTA 132 (279)
T ss_pred ccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCCC-cHHHH
Confidence 12222223344567789999999997654 4699999999 6765 34443
No 35
>KOG0553|consensus
Probab=99.79 E-value=3.8e-19 Score=170.03 Aligned_cols=124 Identities=35% Similarity=0.607 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
++...++.++.+|+.+++.++|++|+..|++||+++| |+..|+|||.+|.++|.|+.|+++++.||.+||.+.++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6888999999999999999999999999999999999 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
|.+|..+|++++|++.|+|||+++|++...+..+..+...+++.+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999888888877666554
No 36
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.78 E-value=4.7e-19 Score=168.85 Aligned_cols=168 Identities=22% Similarity=0.326 Sum_probs=114.8
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGF 269 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~ 269 (546)
+++++||+||++..+.++++...+.+..+.++++||++|||+++.++++++.. .++++++||||.+.+....+.
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhCC
Confidence 57899999999999999999887655677899999999999999999988865 368999999999988766442
Q ss_pred --hhhhhhh---------chHHHHHHHHHhhccccceeeec---ceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhh
Q psy11688 270 --EGEVKSK---------YTDLMAQFFTEVYNWLPLCHCIN---NKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLM 335 (546)
Q Consensus 270 --~~e~~~~---------~~~~~~~~~~~~~~~lP~~~~~~---~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~ 335 (546)
..+.... ......+...++++.||+...++ +++++||||+++....... . + ++..+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~--~---~--~~~~~~~~ 148 (207)
T cd07424 76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGV--G---A--VTLRPEDI 148 (207)
T ss_pred CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhh--h---c--cccCcccc
Confidence 1111111 12234566788999999998774 4799999998432211110 0 0 22333455
Q ss_pred hhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCc
Q psy11688 336 CELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGY 388 (546)
Q Consensus 336 ~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~ 388 (546)
.+++|++|........ ..-+.+.||-||+.++..+
T Consensus 149 ~~~~w~~~~~~~~~~~------------------~~~~~~~iV~GHTh~~~~~ 183 (207)
T cd07424 149 EELLWSRTRIQKAQTQ------------------PIKGVDAVVHGHTPVKRPL 183 (207)
T ss_pred eeeeeccchhhhcCcc------------------ccCCCCEEEECCCCCCcce
Confidence 6789987653221110 0114466888888876433
No 37
>PHA02239 putative protein phosphatase
Probab=99.78 E-value=9.7e-19 Score=168.49 Aligned_cols=171 Identities=22% Similarity=0.314 Sum_probs=115.7
Q ss_pred cccccccchhHhhHHHHHHHhCCC-CCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcc
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLP-SPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGF 269 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~-~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~ 269 (546)
++++||+||+++.|.++++..... .+.+.++++|||||||++|.+++..++.+.. .+.++++|+||||.+.+....+.
T Consensus 3 ~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~~~ 81 (235)
T PHA02239 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIMENV 81 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHhCc
Confidence 689999999999999999987432 1346799999999999999999999988653 45689999999999876543110
Q ss_pred h--------------hhhhhhch-------------------------------HHHHHHHHHhhccccceeeecceEEE
Q psy11688 270 E--------------GEVKSKYT-------------------------------DLMAQFFTEVYNWLPLCHCINNKVLV 304 (546)
Q Consensus 270 ~--------------~e~~~~~~-------------------------------~~~~~~~~~~~~~lP~~~~~~~~~~~ 304 (546)
. .+....|+ ...+..+..+++.||+....+ +++|
T Consensus 82 ~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~if 160 (235)
T PHA02239 82 DRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KYIF 160 (235)
T ss_pred hhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CEEE
Confidence 0 01112221 012244556889999999887 7999
Q ss_pred EeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEecccc
Q psy11688 305 MHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVK 384 (546)
Q Consensus 305 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~ 384 (546)
||||+ .|. .+..++...+++|.+. . .+.. .-+.||-||+++
T Consensus 161 VHAGi-~p~--------------~~~~~q~~~~llWiR~-f----~~~~-------------------~g~~vV~GHTp~ 201 (235)
T PHA02239 161 SHSGG-VSW--------------KPVEEQTIDQLIWSRD-F----QPRK-------------------DGFTYVCGHTPT 201 (235)
T ss_pred EeCCC-CCC--------------CChhhCCHhHeEEecc-c----CCCC-------------------CCcEEEECCCCC
Confidence 99999 432 1223344578999985 2 1111 123678888887
Q ss_pred ccCceEeCCCeEEEEeCCC
Q psy11688 385 QDGYEVAHDGRCITVFSAP 403 (546)
Q Consensus 385 ~~G~~~~~~~~~itifsa~ 403 (546)
..+.... .++.|.|-+..
T Consensus 202 ~~~~~~~-~~~~I~IDtGa 219 (235)
T PHA02239 202 DSGEVEI-NGDMLMCDVGA 219 (235)
T ss_pred CCCcccc-cCCEEEeecCc
Confidence 6544222 23456666654
No 38
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.77 E-value=2.7e-18 Score=166.52 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=128.4
Q ss_pred ccccccccchhHhhHHHHHHHhCCC-----CCCCCeeeeccccccCCChHHHHHHHhhhhhcCCC-eEEEEccccccchh
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLP-----SPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN-HFFMARGNHESAYM 263 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~-----~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~-~v~~lrGNHE~~~~ 263 (546)
.++++|||||+++.|.++++..... ...+.+||||||||||++|.+|++++.+++..+|. .+++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 4899999999999999999865321 23456999999999999999999999999888876 68899999998876
Q ss_pred hhhhc---------ch---------hh---------------------------------------------hhhhch--
Q psy11688 264 NQIYG---------FE---------GE---------------------------------------------VKSKYT-- 278 (546)
Q Consensus 264 ~~~~~---------~~---------~e---------------------------------------------~~~~~~-- 278 (546)
...-. |. +| ....|+
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 54421 00 00 111121
Q ss_pred -------HHHHHHHHHhhccccceeeecceE-------------EEEeCCccCCCCCChhhhhccC-CCCCCCCchhhhh
Q psy11688 279 -------DLMAQFFTEVYNWLPLCHCINNKV-------------LVMHGGLFSSDNVTLEDIRTID-RNRQPPDEGLMCE 337 (546)
Q Consensus 279 -------~~~~~~~~~~~~~lP~~~~~~~~~-------------~~vHgGi~~~~~~~~~~i~~~~-r~~~~~~~~~~~d 337 (546)
..+.+...+|++.||.....+ .+ +|||||+ .|...--+|.+.+. +....|. .|
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~-~~~~~~~~g~~~~~lifVHAGl-rPg~pLe~Q~~~L~~~d~~~p~----~~ 236 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEED-DVCIETEEGLKHCKLIAVHAGL-EKSNSVEEQLKLLRTKDTSIPK----IA 236 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeC-cccccccccccccceEEEEccc-CCCCChHHhhhhhhcccccccc----cc
Confidence 123355678999999998766 45 9999999 76654334433321 1111111 27
Q ss_pred hhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEE
Q psy11688 338 LLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFIT 417 (546)
Q Consensus 338 llWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~ 417 (546)
++|.+...- ..++.. ...-.+||-||+. +....+.-|.|-+..-|. +.--|+++
T Consensus 237 ~l~~R~~f~----~~~~~~--------------~~~~~~VVhGHt~-----~~~~~~~Ri~iDtGa~~~---~~l~aa~v 290 (304)
T cd07421 237 PLSGRKNVW----NIPQEL--------------ADKKTIVVSGHHG-----KLHIDGLRLIIDEGGGFD---DRPIAAIV 290 (304)
T ss_pred ccccchhhh----cCcccc--------------cCCCeEEEECCCC-----CceecCCEEEEECCCCcC---CceeEEEE
Confidence 888875421 111110 0012578899992 344555567777776663 34566677
Q ss_pred e
Q psy11688 418 M 418 (546)
Q Consensus 418 ~ 418 (546)
+
T Consensus 291 l 291 (304)
T cd07421 291 L 291 (304)
T ss_pred e
Confidence 7
No 39
>KOG0377|consensus
Probab=99.76 E-value=4.7e-19 Score=174.50 Aligned_cols=110 Identities=30% Similarity=0.463 Sum_probs=92.8
Q ss_pred CCCCCCCCccchhhhhhhhhhhhhhhHhhCcchhhhHHHHHHHHHHh---------------------------------
Q psy11688 434 GVSPPEPALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDIKKK--------------------------------- 480 (546)
Q Consensus 434 ~~~~~~p~l~~~~~~~~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~--------------------------------- 480 (546)
|..+.+|++.-. +..+.+..|.+.|+..+.||.+|++.+|.+..+.
T Consensus 104 ~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~ 182 (631)
T KOG0377|consen 104 PDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLV 182 (631)
T ss_pred CccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEE
Confidence 344455666655 5666677788888888888888888888887652
Q ss_pred -----cCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccccchhhhccccccc
Q psy11688 481 -----KILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLFGFKLLYPNHFFM 544 (546)
Q Consensus 481 -----~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~gf~~e~~~~~~~ 544 (546)
+.++++++|||+|||||||+.|+||+++|+++-+.||..++++|||| ||-.|||..|+..||--
T Consensus 183 I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~ 255 (631)
T KOG0377|consen 183 ILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKR 255 (631)
T ss_pred EEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhh
Confidence 35667899999999999999999999999999999999999999999 99999999999998753
No 40
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.73 E-value=7.5e-18 Score=161.34 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=91.6
Q ss_pred ccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 182 HITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 182 ~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
.+.....++++++||+||+++.|.++++...+.+..+.++++||+||||++|.++++++.+ .+++.+|||||.+
T Consensus 8 ~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~ 81 (218)
T PRK09968 8 KINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAM 81 (218)
T ss_pred eccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHH
Confidence 4445556689999999999999999999987666678899999999999999999998753 3688999999999
Q ss_pred hhhhhhcchh--------hhhhhchH---HHHHHHHHhhccccceeeec---ceEEEEeCCcc
Q psy11688 262 YMNQIYGFEG--------EVKSKYTD---LMAQFFTEVYNWLPLCHCIN---NKVLVMHGGLF 310 (546)
Q Consensus 262 ~~~~~~~~~~--------e~~~~~~~---~~~~~~~~~~~~lP~~~~~~---~~~~~vHgGi~ 310 (546)
.+.....-.. +....... ........+++.||+...+. +++++||||+|
T Consensus 82 ~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 82 ALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 8865421100 00111111 12233456899999998763 47999999983
No 41
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=99.73 E-value=1.2e-18 Score=173.34 Aligned_cols=92 Identities=29% Similarity=0.485 Sum_probs=82.1
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
+.+.++..++...|||||+ ++.|.++++..+.++..+|||||||||||++|+||+.+|+++|+.+|.+|+++||||
T Consensus 52 p~ll~i~~~i~vvGDIHG~--~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~ 129 (320)
T PTZ00480 52 PILLELEAPLKICGDVHGQ--YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 129 (320)
T ss_pred CceEecCCCeEEEeecccC--HHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccch
Confidence 4444444556789999999 556888999888889999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhcccccc
Q psy11688 528 --IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~ 543 (546)
+|..|||++|+..+|.
T Consensus 130 ~~~~~~ygF~~e~~~~y~ 147 (320)
T PTZ00480 130 ASINRIYGFYDECKRRYT 147 (320)
T ss_pred hhhhhhcchHHHHHhhcC
Confidence 8899999999999885
No 42
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=99.73 E-value=1.4e-18 Score=171.98 Aligned_cols=93 Identities=30% Similarity=0.469 Sum_probs=83.1
Q ss_pred hhhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC-
Q psy11688 449 LKFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC- 527 (546)
Q Consensus 449 ~~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh- 527 (546)
++.+.++..++...|||||+| ..|.++++..+.++..+|||||||||||++|+||+.+|+++|+.+|.+++++||||
T Consensus 44 e~~ll~i~~p~~ViGDIHG~~--~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 121 (294)
T PTZ00244 44 QPMLLEIRPPVRVCGDTHGQY--YDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHE 121 (294)
T ss_pred CCCeEeccCCceeeccCCCCH--HHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccc
Confidence 344555566678999999995 55899999888888889999999999999999999999999999999999999999
Q ss_pred ---cccccchhhhcccccc
Q psy11688 528 ---IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 ---~~~~~gf~~e~~~~~~ 543 (546)
+|..|||++|+.++|.
T Consensus 122 ~~~~~~~~gf~~e~~~~y~ 140 (294)
T PTZ00244 122 CASINKMYGFFDDVKRRYN 140 (294)
T ss_pred hHhHhhccChHHHHHHHhh
Confidence 7899999999998874
No 43
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=99.72 E-value=4.7e-18 Score=170.06 Aligned_cols=83 Identities=43% Similarity=0.685 Sum_probs=73.7
Q ss_pred hHhhCcchhhhHHHHHHHHHHhcCCCC-CcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccccc
Q psy11688 459 YKAQGKLHRKYAYRILMDIKKKKILNL-DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLFG 533 (546)
Q Consensus 459 f~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~g 533 (546)
+...|||||+ +..|.++++..+.++ +++|||||||||||++|+||+.+|+++|+.+|.+|++||||| ++..||
T Consensus 62 ~~VvGDIHG~--~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~g 139 (316)
T cd07417 62 ITVCGDTHGQ--FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYG 139 (316)
T ss_pred eEEeecccCC--HHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhh
Confidence 4567999999 455888888877654 457999999999999999999999999999999999999999 888999
Q ss_pred hhhhcccccc
Q psy11688 534 FKLLYPNHFF 543 (546)
Q Consensus 534 f~~e~~~~~~ 543 (546)
|..|+.++|.
T Consensus 140 f~~e~~~k~~ 149 (316)
T cd07417 140 FEGEVKAKYN 149 (316)
T ss_pred hcchhhhccc
Confidence 9999988874
No 44
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=99.72 E-value=1.9e-18 Score=172.67 Aligned_cols=92 Identities=27% Similarity=0.496 Sum_probs=81.3
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
+.+..+..++...|||||+| ..|.++++..+.+++++|||||||||||++|+||+.+|+++|+.||.+|++|||||
T Consensus 36 ~~l~~i~~~i~ViGDIHG~~--~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~ 113 (305)
T cd07416 36 PNLLRIEAPVTVCGDIHGQF--YDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHEC 113 (305)
T ss_pred CCeEccCCCEEEEEeCCCCH--HHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcH
Confidence 33444455567899999995 55889999989899999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhcccccc
Q psy11688 528 --IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~ 543 (546)
++..|||.+|+..+|.
T Consensus 114 ~~l~~~~gf~~e~~~~y~ 131 (305)
T cd07416 114 RHLTEYFTFKQECKIKYS 131 (305)
T ss_pred HHHHHhhCchhHHHHhcc
Confidence 7789999999988764
No 45
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=99.72 E-value=2.1e-18 Score=171.37 Aligned_cols=92 Identities=24% Similarity=0.297 Sum_probs=82.3
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
+.+..+..++...|||||+ +..|.++++..+.+++.+|||||||||||++|+||+.+|+++|+.+|.+|+++||||
T Consensus 36 ~~~~~i~~~i~vvGDIHG~--~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 113 (303)
T PTZ00239 36 SNVQPVRAPVNVCGDIHGQ--FYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHES 113 (303)
T ss_pred CCeEecCCCEEEEEeCCCC--HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccch
Confidence 4444555666789999999 555888998888888999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhcccccc
Q psy11688 528 --IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~ 543 (546)
+|..|||++|+.++|.
T Consensus 114 ~~~~~~~gf~~e~~~ky~ 131 (303)
T PTZ00239 114 RQCTQVYGFYEEILRKYG 131 (303)
T ss_pred HHHhhhcChHHHHHHHhc
Confidence 8899999999999885
No 46
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=99.72 E-value=2.4e-18 Score=170.06 Aligned_cols=92 Identities=25% Similarity=0.398 Sum_probs=81.5
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
+.+..+..++...|||||+ +..|.++++..+.+++++|||||||||||++|+||+.+|+++|+.+|.+|+++||||
T Consensus 35 ~~~~~i~~~i~vvGDIHG~--~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 112 (285)
T cd07415 35 SNVQRVRSPVTVCGDIHGQ--FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHES 112 (285)
T ss_pred CCEEecCCCEEEEEeCCCC--HHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccch
Confidence 3344444566789999999 455888999888889999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhcccccc
Q psy11688 528 --IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~ 543 (546)
++..|||++|+.++|.
T Consensus 113 ~~~~~~ygf~~e~~~~y~ 130 (285)
T cd07415 113 RQITQVYGFYDECLRKYG 130 (285)
T ss_pred HhhhhhcchhHHHHHhcC
Confidence 8889999999998874
No 47
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=99.71 E-value=2.9e-18 Score=170.15 Aligned_cols=92 Identities=29% Similarity=0.498 Sum_probs=81.7
Q ss_pred hhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC--
Q psy11688 450 KFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC-- 527 (546)
Q Consensus 450 ~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh-- 527 (546)
+.+..+..++...|||||+ +..|.++++..+.+++.+|||||||||||++|+||+.+|+++|+.||.+++++||||
T Consensus 43 p~~l~i~~~i~viGDIHG~--~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~ 120 (293)
T cd07414 43 PILLELEAPLKICGDIHGQ--YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 120 (293)
T ss_pred CCeEecCCceEEEEecCCC--HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccch
Confidence 3444444556789999999 556889999888889999999999999999999999999999999999999999999
Q ss_pred --cccccchhhhcccccc
Q psy11688 528 --IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 --~~~~~gf~~e~~~~~~ 543 (546)
++..|||++|+.++|.
T Consensus 121 ~~~~~~~gf~~e~~~~y~ 138 (293)
T cd07414 121 ASINRIYGFYDECKRRYN 138 (293)
T ss_pred hhHhhhcchhhHHHHhhh
Confidence 8889999999998874
No 48
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=99.68 E-value=1.2e-17 Score=164.62 Aligned_cols=91 Identities=27% Similarity=0.490 Sum_probs=80.7
Q ss_pred hhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC---
Q psy11688 451 FMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC--- 527 (546)
Q Consensus 451 ~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh--- 527 (546)
.+..+..++...|||||+ +..|.++++..+.+++.+|||||||||||++|+||+.+|+++|+.+|.+++++||||
T Consensus 22 ~~~~i~~~i~vvGDiHG~--~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 22 NLVEVSAPVTVCGDIHGQ--FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CeEEeCCCEEEEEeCcCC--HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 334444566789999999 555888998888889999999999999999999999999999999999999999999
Q ss_pred -cccccchhhhcccccc
Q psy11688 528 -IFTLFGFKLLYPNHFF 543 (546)
Q Consensus 528 -~~~~~gf~~e~~~~~~ 543 (546)
++..|||++|+..+|.
T Consensus 100 ~~~~~~gf~~e~~~~~~ 116 (271)
T smart00156 100 SMNEIYGFYDECKRKYG 116 (271)
T ss_pred HHHHhccchhhhhhhcC
Confidence 7889999999988864
No 49
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=99.68 E-value=1.4e-17 Score=168.51 Aligned_cols=85 Identities=21% Similarity=0.419 Sum_probs=75.7
Q ss_pred hhhHhhCcchhhhHHHHHHHHHHhcCCCC-CcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccc
Q psy11688 457 QTYKAQGKLHRKYAYRILMDIKKKKILNL-DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTL 531 (546)
Q Consensus 457 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~ 531 (546)
.++...|||||+ +..|+.+++..+.++ +.+|||||||||||++|+||+.+|+++|+.+|.+|+++|||| ++..
T Consensus 66 ~~i~VvGDIHG~--~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~ 143 (377)
T cd07418 66 CEVVVVGDVHGQ--LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSM 143 (377)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhh
Confidence 456679999999 556888888776655 567999999999999999999999999999999999999999 8899
Q ss_pred cchhhhcccccc
Q psy11688 532 FGFKLLYPNHFF 543 (546)
Q Consensus 532 ~gf~~e~~~~~~ 543 (546)
|||.+|+.++|.
T Consensus 144 ~Gf~~E~~~~y~ 155 (377)
T cd07418 144 YGFEQEVLTKYG 155 (377)
T ss_pred cccchhhhhhcC
Confidence 999999998874
No 50
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=99.65 E-value=3.9e-17 Score=163.95 Aligned_cols=89 Identities=33% Similarity=0.467 Sum_probs=76.1
Q ss_pred hhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCC--------cceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcC
Q psy11688 454 DLMQTYKAQGKLHRKYAYRILMDIKKKKILNLD--------FTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARV 525 (546)
Q Consensus 454 ~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rg 525 (546)
.+..++...|||||+ ++.|.++++..+.+++ .+|||||||||||++|+||+.+|+++|+.+|.+|+++||
T Consensus 45 ~i~~~~~viGDIHG~--~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRG 122 (311)
T cd07419 45 RLRAPIKIFGDIHGQ--FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRG 122 (311)
T ss_pred eeCCCEEEEEeccCC--HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEecc
Confidence 334445678999999 5558888877666543 579999999999999999999999999999999999999
Q ss_pred CC----cccccchhhhccccccc
Q psy11688 526 EC----IFTLFGFKLLYPNHFFM 544 (546)
Q Consensus 526 nh----~~~~~gf~~e~~~~~~~ 544 (546)
|| ++..|||..|+..++..
T Consensus 123 NHE~~~l~~~~gf~~e~~~~~~~ 145 (311)
T cd07419 123 NHEDRDINALFGFREECKERLGE 145 (311)
T ss_pred ccchHHHHHHhcccHHHHHhcCc
Confidence 99 77899999999887753
No 51
>KOG4626|consensus
Probab=99.65 E-value=1.8e-16 Score=162.89 Aligned_cols=184 Identities=16% Similarity=0.225 Sum_probs=158.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
..-+|..++++.++|+.|...+.|++|+.+|.+|+.+.|+ +.++.|+|.+|..+|..+-|+..|++|++++|+++.||.
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 4567888889999999999999999999999999999996 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhh-----------------------chHHHH
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGK-----------------------LHRKYA 163 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~-----------------------l~~~~~ 163 (546)
++|.++...|+..||.++|.+|+.+.|+.+++..+++.++...+.++.... -..+..
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH
Confidence 999999999999999999999999999999999999988876666554111 112345
Q ss_pred HHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHh
Q psy11688 164 YRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 164 ~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~ 211 (546)
.+++..++++++..|++.......++.+..+||..+++.+..+++...
T Consensus 405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 677888899999999988888888899999999999999999998764
No 52
>KOG1126|consensus
Probab=99.60 E-value=5.5e-16 Score=161.65 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=166.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a 104 (546)
...+.+|..++.|...|+++.-+++++.||++|++|+++||+ +.+|..+|.-+....++|.|..+|++||..+|++..|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 345788999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccc
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHIT 184 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~ 184 (546)
||.+|.+|.++++++.|.-.|++|++++|.+......++.++...++. +.+..+++ +++..+|.-..-.
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~--------d~AL~~~~---~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK--------DKALQLYE---KAIHLDPKNPLCK 560 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh--------hHHHHHHH---HHHhcCCCCchhH
Confidence 999999999999999999999999999999999999999998887766 33444444 4444444433333
Q ss_pred cccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeecc-ccccCCChHHHHHHHhhhhh
Q psy11688 185 VEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGD-FVDRGSFSVECIFTLFGFKL 245 (546)
Q Consensus 185 ~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD-~vdrG~~~~e~l~~l~~l~~ 245 (546)
...+..++-.++.+.++..|+++-+.++ .+...+..+|- |.-.|.....++.+..++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3445567888999999998888877653 33334445553 44455566666555555443
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=1.3e-14 Score=129.87 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
+.+|+. +...|..+++.|++++|+..|++++..+|+ ..+|.++|.++..+|++++|+..|+++++++|+++.++++
T Consensus 21 ~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 21 SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 344543 667899999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
+|.++..+|++++|+..|+++++++|+++..+..++.+...++
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977777665443
No 54
>KOG0548|consensus
Probab=99.56 E-value=2e-14 Score=146.76 Aligned_cols=120 Identities=34% Similarity=0.564 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
-+|+.++..+.+|+.+|+.|+|..|+..|++||..+|+ +.+|.|||.||.+++.+..|+.+++++++++|++.++|++.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 45677888899999999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
|.++..+.+|++|+++|+++++++|++.++...+.+|...+
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888888764
No 55
>KOG4626|consensus
Probab=99.53 E-value=6.2e-14 Score=144.43 Aligned_cols=187 Identities=15% Similarity=0.096 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
...|..+.++-+.|..|+.+|+.+-||+.|++||+++|+ ..+|.|+|.++...|+..+|.++|.+|+.+.|+.+++..+
T Consensus 280 ~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 280 NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 445555566666666666666666666666666666665 5666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh----------------------hhhc-hHHHHH
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI----------------------KGKL-HRKYAY 164 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~----------------------~~~l-~~~~~~ 164 (546)
+|.+|.++|..++|...|+++++..|+.+.+..+++.+++..+.+++ +..+ ..++..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 66666666666666666666666666666666666655555444432 1111 113455
Q ss_pred HHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCC
Q psy11688 165 RILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPS 215 (546)
Q Consensus 165 ~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~ 215 (546)
.+++.+.+++...|.+.+.....+...---|.+-.+++....+|+.-++.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 677778888888998888777766556667888888888888888754443
No 56
>KOG4234|consensus
Probab=99.49 E-value=5.2e-13 Score=120.31 Aligned_cols=119 Identities=39% Similarity=0.589 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT------AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~ 105 (546)
...++.+...|+.+|+.|+|++|..-|..||++-|. +..|.|+|.|+++++.++.|+.++.+||+++|.+.+|.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 456778999999999999999999999999999993 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
.++|.+|.++..|++|+.+|.+.++.+|...++...+.++...+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999998888877777665554
No 57
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.48 E-value=2.9e-13 Score=139.48 Aligned_cols=115 Identities=33% Similarity=0.530 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
..+...|+.++..|+|++|+..|++|++++|+ +.+|+++|.+|..+|++++|+.++++|++++|+++.+|+++|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34778899999999999999999999999995 89999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 115 LGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
+|+|++|+..|+++++++|++..+...++.|...+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888777766553
No 58
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=4.7e-13 Score=148.68 Aligned_cols=102 Identities=41% Similarity=0.585 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
.+.+..+.++|+.+++.|+|++|+..|++|++++|++..|.|+|.||.++|++++|+.+++++++++|++.++|+++|.+
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHhhccCC
Q psy11688 112 YMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P 133 (546)
|..+|++++|+..|.+++.+++
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~ 225 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDG 225 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999887766554
No 59
>KOG0543|consensus
Probab=99.46 E-value=4.6e-13 Score=133.64 Aligned_cols=125 Identities=28% Similarity=0.425 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHccCHHHHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP----------------TAIYYANRSFAYLKTEAIGYALNDAS 92 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----------------~~~a~~nla~~~~~~g~~~~Al~~~~ 92 (546)
.+.-+.+....+.|+.+|+.|+|..|+..|++|+..-+ ...++.|+|.|++++++|.+|++.++
T Consensus 202 ~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 202 EERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred HHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 34667788889999999999999999999999987422 14689999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 93 KAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 93 ~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
++|+++|+|.+|+|++|.++..+++|+.|+..|++|++++|+|..+...+..|.+.+++..
T Consensus 282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888777664
No 60
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=7.2e-13 Score=147.18 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
.|..+.++..+|..++..|++++|+..|+++++++|+ ..+|.++|.++..+|++++|+..++++++++|+++.+|+.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4777888999999999999999999999999999996 889999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccccc
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEA 189 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~ 189 (546)
.++..+|++++|+.+|+++++++|++..++..++.++...+++ +.+...+ .+++...|....+....+.
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~--------~eA~~~~---~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI--------ASSMATF---RRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH--------HHHHHHH---HHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999999999888888777665 3333343 3444445554443333344
Q ss_pred ccccccccchhHhhHHHHHHHh
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~ 211 (546)
.+...|+...+...+.++++..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcC
Confidence 4566677777777777777653
No 61
>KOG0548|consensus
Probab=99.45 E-value=2.8e-13 Score=138.51 Aligned_cols=112 Identities=31% Similarity=0.525 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYM 113 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 113 (546)
+..+..+|+.++..|+|+.|+.+|+.||.++| |...|.|++.+|.++|+|++|+++..+.++++|+++++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 35568899999999999999999999999999 69999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHhhccCCCCcchhcccccch
Q psy11688 114 SLGKFKLALRDYEAVHKARPNDKDAKAKFTECN 146 (546)
Q Consensus 114 ~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~ 146 (546)
.+|+|++|+..|.+.|+.+|+|...+..+.+++
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999888
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.1e-12 Score=132.03 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
+..+..++++|..+...|++++|+..|++|++++|+ +.+|.++|.++..+|++++|++.++++++++|++..+|+++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345788999999999999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHhhccCCCCcc
Q psy11688 111 AYMSLGKFKLALRDYEAVHKARPNDKD 137 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~l~P~~~~ 137 (546)
++...|++++|++.|+++++++|+++.
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999873
No 63
>KOG0624|consensus
Probab=99.45 E-value=1.2e-13 Score=133.55 Aligned_cols=183 Identities=20% Similarity=0.203 Sum_probs=153.3
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
..+|..++...++|+.++..|++.+|+..|-.|++.||+ ..+++.+|.+|+.+|+-..|++++.++|++.|++.-|...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 457788899999999999999999999999999999996 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcc---hhcccccchhhhhhhhh-hhhchHHHHHHHHHHHHhhhhcCCccccc
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKD---AKAKFTECNKIVKRMQI-KGKLHRKYAYRILMDIKALFMTQDSLVHI 183 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---~~~~l~~~~~~l~~~~~-~~~l~~~~~~~il~~a~eiL~~~p~~~~i 183 (546)
+|.++.++|++++|.++|+++++.+|++.. +...++.+.+......+ ...+..++...++.....++...|=-..+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 999999999999999999999999996544 44555544444333322 23344456677778888888888766666
Q ss_pred ccccccccccccccchhHhhHHHHHHHh
Q psy11688 184 TVEDEAKFTVCGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 184 ~~~~~~~~~viGDihg~~~~l~~il~~~ 211 (546)
..-++.+++..|+...++.|+..+-+..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 6567788999999999999998876653
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=1.2e-12 Score=115.71 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=106.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy11688 27 VSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~ 105 (546)
+...+|+.+.+....|..+++.|++++|+..+++++..+|+ ..++.++|.++..+|++++|+..++++++++|+++..+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY 88 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 34567778889999999999999999999999999999995 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhc
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
+.+|.++...|++++|++.|+++++++|++.....
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999998876543
No 65
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=1.6e-12 Score=115.09 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=100.0
Q ss_pred hhh-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 29 VED-KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 29 ~~~-~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
+.+ ++..+.++..|..++..|++++|...|+-+..++|. ...|+++|.|+..+|+|++|+..|.+|+.++|+++++++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 778889999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
+.|.|++.+|+.++|.+.|+.|+...-
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998763
No 66
>KOG0547|consensus
Probab=99.42 E-value=2.2e-12 Score=130.26 Aligned_cols=98 Identities=40% Similarity=0.605 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
++..+.+.++.++||.+|+.|+|++||.+|++||++.|+ +.-|.|||.||..+|++++.++++.+|++++|++.+++++
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R 188 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR 188 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 555678889999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHH
Q psy11688 108 RAAAYMSLGKFKLALRDYE 126 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~ 126 (546)
++.++..+|++++|+.+..
T Consensus 189 RA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHhhccHHHHHHhhh
Confidence 9999999999999987764
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.9e-12 Score=123.92 Aligned_cols=169 Identities=13% Similarity=0.117 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
....+..+...|..++..|++++|+..++++++.+|+ ..++..+|.++..+|++++|++.++++++++|++..++..+|
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3445788999999999999999999999999999995 889999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHhhccC--CCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccc
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKAR--PNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVED 187 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~ 187 (546)
.++...|++++|++.|+++++.. |.....+..++.++...++. ..+... ..+.+...|.........
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~---~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF--------DKAEKY---LTRALQIDPQRPESLLEL 175 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH--------HHHHHH---HHHHHHhCcCChHHHHHH
Confidence 99999999999999999999864 34445566666666555444 223333 333444444433322222
Q ss_pred ccccccccccchhHhhHHHHHHH
Q psy11688 188 EAKFTVCGDIHGQFYDLMNIFEL 210 (546)
Q Consensus 188 ~~~~~viGDihg~~~~l~~il~~ 210 (546)
+......|+...+...+.++++.
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 23344455555555555555554
No 68
>KOG0550|consensus
Probab=99.41 E-value=7.1e-13 Score=131.39 Aligned_cols=124 Identities=28% Similarity=0.490 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT 102 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~ 102 (546)
....++..+.+.+.|+..+++|+|..|.+.|+.||.++|+ +..|.|||.+..++|+.++|+.+++.|+++||...
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 3556788889999999999999999999999999999993 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 103 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
+++.++|.|+..+++|++|+++|++|++...+ .+....+.++...++..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998876 66666666655555433
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=2.6e-12 Score=118.83 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
.+....+++..++|..|+.+|++..|...+++|++.||+ ..+|..+|..|.++|+.+.|-+.|++|+.++|++.+++.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 344556788899999999999999999999999999996 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhcc--CCCCcchhcccccchhhhhhh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKA--RPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.|--+..+|++++|.+.|++|+.. -|.-+..+.+++.|....++.
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 999999999999999999999974 244566788888888777666
No 70
>KOG4648|consensus
Probab=99.39 E-value=7.2e-13 Score=128.22 Aligned_cols=115 Identities=38% Similarity=0.561 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
+.+..+.++|+.||++|.|++||.+|.+++.++| |+..+.|||.+|+++++|..|..+|+.|+.+|..+.+||-++|.+
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 4455578999999999999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 112 YMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
...+|...||.++++.+|++.|++.+....++.+..
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999998777665555543
No 71
>KOG1155|consensus
Probab=99.37 E-value=3.2e-12 Score=128.38 Aligned_cols=154 Identities=17% Similarity=0.244 Sum_probs=130.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Q psy11688 38 LKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLG 116 (546)
Q Consensus 38 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g 116 (546)
.--.||.|.-+++.++|+.+|++|+++||. ..+|..+|.-|+.+++-..|++.|++|++++|.+.+|||.+|++|..++
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 344688888999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccc
Q psy11688 117 KFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGD 196 (546)
Q Consensus 117 ~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGD 196 (546)
-..=|+-+|++|+++.|+|+..|..+++|+.++++. .++.+....+ +.-.. ..+..+..+|+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~--------~eAiKCykra---i~~~d-------te~~~l~~Lak 474 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL--------EEAIKCYKRA---ILLGD-------TEGSALVRLAK 474 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH--------HHHHHHHHHH---Hhccc-------cchHHHHHHHH
Confidence 999999999999999999999999999999988877 3333333332 22111 12234777899
Q ss_pred cchhHhhHHHHHH
Q psy11688 197 IHGQFYDLMNIFE 209 (546)
Q Consensus 197 ihg~~~~l~~il~ 209 (546)
+|.++.++.++-.
T Consensus 475 Lye~l~d~~eAa~ 487 (559)
T KOG1155|consen 475 LYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHhHHHHHH
Confidence 9998888876543
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.36 E-value=6.4e-12 Score=118.59 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=102.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCcHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAY-LKTEA--IGYALNDASKAIELDQTYTK 103 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~-~~~g~--~~~Al~~~~~al~l~p~~~~ 103 (546)
...+|++++.|..+|..+...|++++|+..|++|++++|+ ..++.++|.++ ...|+ +++|.+.++++++++|+++.
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~ 145 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT 145 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence 4678889999999999999999999999999999999995 99999999975 67787 59999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
+++.+|.++...|++++|+.+|+++++++|.+.+-
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999999999999875543
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=2.9e-12 Score=140.21 Aligned_cols=118 Identities=14% Similarity=-0.044 Sum_probs=103.9
Q ss_pred hhhHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy11688 29 VEDKERAEKLKAEANEHFKN---------QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELD 98 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~---------g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~ 98 (546)
+.+|+.+.++..+|.++... +++++|+..+++|++++|+ +.++..+|.++...|++++|++.+++|++++
T Consensus 289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45677777888888776533 4589999999999999995 9999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccch
Q psy11688 99 QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECN 146 (546)
Q Consensus 99 p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~ 146 (546)
|+++.+|+.+|.++..+|++++|+..++++++++|.++.+...++.+.
T Consensus 369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999877654444333
No 74
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=2.3e-11 Score=139.16 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=112.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCh
Q psy11688 39 KAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKF 118 (546)
Q Consensus 39 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~ 118 (546)
...+......|++++|+..|++|++++|+..++.++|.++.++|++++|++.++++++++|+++.++.++|.++...|++
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 33444455568999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccc
Q psy11688 119 KLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVE 186 (546)
Q Consensus 119 ~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~ 186 (546)
++|++.|+++++++|+++.++..++.++...++++ .+...+.+++...|+...+...
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~-----------eA~~~l~~Al~l~P~~a~i~~~ 716 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA-----------ATQHYARLVIDDIDNQALITPL 716 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHhcCCCCchhhhh
Confidence 99999999999999999999999998888777663 3445566666677776666544
No 75
>KOG1126|consensus
Probab=99.29 E-value=3.5e-12 Score=133.55 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=137.0
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
.-+|..+.++...|-.+.....|+.|..+|.+|+..+|. ..|||.+|.+|+++++++.|.-.|++|++++|.+......
T Consensus 449 Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~ 528 (638)
T KOG1126|consen 449 QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH 528 (638)
T ss_pred ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh
Confidence 456777888888999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccc
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVED 187 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~ 187 (546)
.|.++.++|+.++|++.|++|+.++|.|+-..+..+.++..+.++ ..+...+++.+++..++..+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~--------~eal~~LEeLk~~vP~es~v------- 593 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY--------VEALQELEELKELVPQESSV------- 593 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch--------HHHHHHHHHHHHhCcchHHH-------
Confidence 999999999999999999999999999999999999999888777 45556666666665555433
Q ss_pred ccccccccccchhHhhHHHHH
Q psy11688 188 EAKFTVCGDIHGQFYDLMNIF 208 (546)
Q Consensus 188 ~~~~~viGDihg~~~~l~~il 208 (546)
.+.+|.+|-.+..-..++
T Consensus 594 ---~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 594 ---FALLGKIYKRLGNTDLAL 611 (638)
T ss_pred ---HHHHHHHHHHHccchHHH
Confidence 344555555444433333
No 76
>KOG1155|consensus
Probab=99.28 E-value=3.6e-11 Score=120.93 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=121.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
..-||+...+|...|-.|...++...|++.|++|++++| |..+|+.+|++|--++...=|+-+|++|+++.|+++..|.
T Consensus 357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~ 436 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV 436 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence 456888889999999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhh
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIK 155 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~ 155 (546)
.+|.||.++++.++|+++|.+|+...-.+..++..++.+++.+++..+.
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999988899999999999988877543
No 77
>KOG0547|consensus
Probab=99.28 E-value=2.3e-11 Score=122.98 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=125.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a 104 (546)
+..++-...++++...|..++-.|++-.|-..++++|.++|. ...|..||.+|+..++-++-.++|.+|.++||+|+..
T Consensus 317 ~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 317 EIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred ccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 334445667899999999999999999999999999999995 5669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccc
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHIT 184 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~ 184 (546)
|+.+|++++-+++|++|+.+|+++++++|++.-++.+++-+.....++ ..... -..+..++.|++.++.
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~--------~~~m~---~Fee~kkkFP~~~Evy 465 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKI--------AESMK---TFEEAKKKFPNCPEVY 465 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH--------HHHHH---HHHHHHHhCCCCchHH
Confidence 999999999999999999999999999999998887777766555544 23333 3445555666666653
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=2.7e-11 Score=132.62 Aligned_cols=125 Identities=12% Similarity=0.025 Sum_probs=114.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.+.+|++++++..+|..+...|++++|+..|++|++++|+ +.+++++|.++...|++++|++.++++++++|.++.+++
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 4667888999999999999999999999999999999996 899999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccC-CCCcchhcccccchhhhhhh
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKAR-PNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l~~~~~~l~~~ 152 (546)
.++.+++..|++++|++.++++++.+ |+++.++..++.++...++.
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 88888888999999999999999875 77888888888888777766
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=2.9e-11 Score=117.52 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=109.1
Q ss_pred cccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccC
Q psy11688 8 LEYLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEA 83 (546)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~ 83 (546)
+.+++.+|++-.. .+.. ++++..++.++.+|..+++.|+|++|+..|++++..+|+ ..+++.+|.++...|+
T Consensus 10 ~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~ 85 (235)
T TIGR03302 10 LLLLLAGCSSKKK--KEAD--PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD 85 (235)
T ss_pred HHHHHhhccCCcc--cccC--CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC
Confidence 3445566665422 1111 345666789999999999999999999999999999995 3689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHh--------cChHHHHHHHHHhhccCCCCcchhc
Q psy11688 84 IGYALNDASKAIELDQTYTK---AYYRRAAAYMSL--------GKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 84 ~~~Al~~~~~al~l~p~~~~---a~~~lg~~~~~~--------g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
+++|+..++++++.+|+++. +++.+|.++... |++++|++.|++++..+|++..+..
T Consensus 86 ~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 86 YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 99999999999999998876 799999999987 8899999999999999999876653
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=3.5e-11 Score=107.69 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 55 IELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 55 i~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
...|++|++++|+. ++++|.++.+.|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56799999999974 6689999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhcccccchhhhhhh
Q psy11688 135 DKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 135 ~~~~~~~l~~~~~~l~~~ 152 (546)
++.++..++.++...++.
T Consensus 91 ~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CcHHHHHHHHHHHHcCCH
Confidence 999999999999888777
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.23 E-value=4.9e-11 Score=132.88 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=104.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.+..|+.++++..+|......|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..++++++++|+++.++.
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4678888889999999999999999999999999999995 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchhccc
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKF 142 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l 142 (546)
.+|.++..+|++++|+..+++++..+|+++.++...
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999999888766543
No 82
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.22 E-value=1.9e-10 Score=98.75 Aligned_cols=105 Identities=19% Similarity=0.120 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYR 107 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~ 107 (546)
++.++.+|..+.++|++++|+..|.++++.+|+ ..+++.+|.++.+.|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 467899999999999999999999999999985 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
+|.++..++++++|++.++++++..|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999987654
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=6.5e-11 Score=91.63 Aligned_cols=66 Identities=35% Similarity=0.498 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc-ChHHHHHHHHHhhccCC
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLG-KFKLALRDYEAVHKARP 133 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~eA~~~~~kal~l~P 133 (546)
+..|.++|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556666666666666666666666666666666666666666666666 46666666666666655
No 84
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.20 E-value=7.7e-11 Score=139.75 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-H--H------------HHHHHHHHHHHccCHHHHHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-A--I------------YYANRSFAYLKTEAIGYALNDASK 93 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~--~------------a~~nla~~~~~~g~~~~Al~~~~~ 93 (546)
..+|++++++..+|..++++|++++|+.+|+++++.+|+ . . ....+|.++.+.|++++|++.|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456677788888899999999999999999999988884 1 1 123557788889999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhh------------------
Q psy11688 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIK------------------ 155 (546)
Q Consensus 94 al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~------------------ 155 (546)
+++++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..++.++... ..++.
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877766655321 11100
Q ss_pred --------------hhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCee
Q psy11688 156 --------------GKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYL 221 (546)
Q Consensus 156 --------------~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~ 221 (546)
.....+...+++....+++...|+...+....+..+...|+...+...+.++++..+ ...+.+.
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~ 533 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVY 533 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHH
Confidence 001112334455556666777777655544455556777888788887877776533 2222233
Q ss_pred eeccccccCCChHHHHHHH
Q psy11688 222 FNGDFVDRGSFSVECIFTL 240 (546)
Q Consensus 222 ~lGD~vdrG~~~~e~l~~l 240 (546)
.+|-+.....+..+++..+
T Consensus 534 a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3444444444444444443
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.7e-10 Score=127.34 Aligned_cols=124 Identities=6% Similarity=0.001 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
-|..+++++.+|....+.|.+++|...++.+++++|+ ..+..++|.++.+++++++|+..++++++.+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3556889999999999999999999999999999996 899999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
.++..+|++++|+..|+++++.+|+++.++..++.+++..++.+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999988887754
No 86
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.18 E-value=3.7e-10 Score=104.39 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=98.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~ 103 (546)
...++..+..++.+|..+...|++++|+.+|+++++..|+ ..++.++|.++..+|++++|+..++++++++|++..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4567788899999999999999999999999999998774 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--------------hHHHHHHHHHhhccCCCC
Q psy11688 104 AYYRRAAAYMSLGK--------------FKLALRDYEAVHKARPND 135 (546)
Q Consensus 104 a~~~lg~~~~~~g~--------------~~eA~~~~~kal~l~P~~ 135 (546)
++..+|.++..+|+ +++|++.++++++++|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999888 577888888888888875
No 87
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.18 E-value=1.8e-10 Score=128.44 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=125.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy11688 39 KAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY----ALNDASKAIELDQTYTKAYYRRAAAYM 113 (546)
Q Consensus 39 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~----Al~~~~~al~l~p~~~~a~~~lg~~~~ 113 (546)
...|..+.+.|++++|+..|+++++.+|+ ..++.++|.++..+|++++ |+..++++++++|+++.++..+|.++.
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34577788889999999999999999885 8888899999999999885 789999999999999999999999999
Q ss_pred HhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccccccccc
Q psy11688 114 SLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTV 193 (546)
Q Consensus 114 ~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~v 193 (546)
.+|++++|+..++++++++|+++.++..++.++...++++ .++..+.+++...|.........+..+..
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~-----------eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT-----------AASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 9999999999999999999998888888888877666653 33344455555566543322222334566
Q ss_pred ccccchhHhhHHHHHHHh
Q psy11688 194 CGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 194 iGDihg~~~~l~~il~~~ 211 (546)
.|+...+...+.++++..
T Consensus 365 ~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 365 AGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 777777777777777764
No 88
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=4.4e-10 Score=107.41 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELD--QTYTKAY 105 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~--p~~~~a~ 105 (546)
..+|+.+..+...|..+...|++++|+..|+++++..|+ ..++.++|.++...|++++|++.++++++.. |.....+
T Consensus 59 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (234)
T TIGR02521 59 EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL 138 (234)
T ss_pred HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHH
Confidence 345666778889999999999999999999999999995 8899999999999999999999999999864 5667889
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
..+|.++...|++++|.+.++++++.+|++..++..++.++...++.
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999988888888887766665
No 89
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.17 E-value=4e-10 Score=129.19 Aligned_cols=121 Identities=16% Similarity=0.017 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
..+|+ +..+.+.|.++.+.|++++|+..|+++++++|+ +.++.++|.++...|++++|++.+++|++++|+++.++++
T Consensus 604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34454 678899999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
+|.++..+|++++|+..|+++++++|++..+....+++.....
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 9999999999999999999999999999998887777765443
No 90
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.16 E-value=1.1e-10 Score=90.33 Aligned_cols=66 Identities=35% Similarity=0.479 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTE-AIGYALNDASKAIELDQ 99 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g-~~~~Al~~~~~al~l~p 99 (546)
++..|...|..++..|+|++|+..|++|++.+|+ +.+++++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4788999999999999999999999999999996 899999999999999 79999999999999998
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.15 E-value=2.8e-10 Score=135.02 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHH----------------------------------
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYAN---------------------------------- 73 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~n---------------------------------- 73 (546)
..+|+.+.++..+|.++..+|++++|+..|+++++++|+ ..++..
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556677888888999999999999999999988884 444433
Q ss_pred --------HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 74 --------RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 74 --------la~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
+|.++...|++++|++.++++++++|+++++++.+|.+|..+|++++|+..++++++.+|+++.+++.++..
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344455678888999999999999999999999999999999999999999999998888888776655443
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=5.3e-10 Score=105.58 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=98.3
Q ss_pred ccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHhcC--hHHHHH
Q psy11688 48 NQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY-MSLGK--FKLALR 123 (546)
Q Consensus 48 ~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~-~~~g~--~~eA~~ 123 (546)
.++.++++..++++++.+|+ ..+|.++|.+|..+|++++|+..|++|++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 67789999999999999995 999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 124 DYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 124 ~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.++++++++|++..++..++.+....+++
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 99999999999999999999999877766
No 93
>KOG0545|consensus
Probab=99.14 E-value=5e-10 Score=104.23 Aligned_cols=133 Identities=23% Similarity=0.233 Sum_probs=115.3
Q ss_pred eecccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC-----------
Q psy11688 6 LSLEYLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV--------NP----------- 66 (546)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p----------- 66 (546)
+.+.++++-.++....-.++...++..+.+..+.++||.+|+.|+|++|...|..||.. .|
T Consensus 149 FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~ 228 (329)
T KOG0545|consen 149 FVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKM 228 (329)
T ss_pred eehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHh
Confidence 44455566666666666676777888888999999999999999999999999999853 33
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 67 TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 67 ~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
....+.|.++|++..|+|-++++.+...++.+|+|.+|||++|.++....+.++|.++|.++++++|.-..+
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 156899999999999999999999999999999999999999999999999999999999999999975543
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=7.1e-10 Score=89.25 Aligned_cols=98 Identities=40% Similarity=0.549 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSL 115 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~ 115 (546)
.++..|..++..|++++|+..++++++..|+ ..++..+|.++...+++++|++.++++++..|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4688999999999999999999999999996 689999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhccCCC
Q psy11688 116 GKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 116 g~~~eA~~~~~kal~l~P~ 134 (546)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 95
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.13 E-value=4.1e-11 Score=117.04 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=56.8
Q ss_pred HhhCcchhhhHHHHHHHHHHhcCC---------CCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCCccc
Q psy11688 460 KAQGKLHRKYAYRILMDIKKKKIL---------NLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVECIFT 530 (546)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh~~~ 530 (546)
...|||||+ +..|.++++..+. +.+.++||+|||||||+.|.||+.+++.+. .+..++++||||...
T Consensus 4 ~vIGDIHG~--~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 4 DIIGDIHGC--YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred EEEEECccC--HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 457999999 4558888877554 346789999999999999999999998875 455799999999433
Q ss_pred ccchh
Q psy11688 531 LFGFK 535 (546)
Q Consensus 531 ~~gf~ 535 (546)
.+.|.
T Consensus 80 ~l~~~ 84 (245)
T PRK13625 80 LYRFF 84 (245)
T ss_pred HHHHH
Confidence 44443
No 96
>PLN02789 farnesyltranstransferase
Probab=99.12 E-value=8.1e-10 Score=111.64 Aligned_cols=122 Identities=12% Similarity=0.022 Sum_probs=100.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCcHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQ-AYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAI--GYALNDASKAIELDQTYTK 103 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~--~~Al~~~~~al~l~p~~~~ 103 (546)
...+|+...+|..+|.++...| ++++|+..++++++.+|+ ..+|.+++.++.++++. ++++..++++++++|+|..
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 4567888888888888888887 578888888888888885 78888888888888764 6778888888888888888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
+|..+|.++..+|++++|+++++++++.+|.|..++..++.+....
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888877765443
No 97
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=6.4e-10 Score=127.88 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
...+..+..+...|..++..|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..++++++.+|.+..++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (899)
T TIGR02917 119 LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198 (899)
T ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 345677888999999999999999999999999999995 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
+|.++...|++++|++.|+++++.+|++..++..++.++...++++
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE 244 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999998888877776555543
No 98
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.11 E-value=4e-10 Score=129.55 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
|..+..+...|..++..|++++|+..|.++++..|+...+.+++.++.+.|++++|++.++++++.+|++..+++.+|.+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 779 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL 779 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566778889999999999999999999999999878888999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccccccc
Q psy11688 112 YMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKF 191 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~ 191 (546)
+..+|++++|++.|+++++.+|+++.++..++.++...++ . +++..+.+++...|+...+....+..+
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P-----------RALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H-----------HHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999998888888777755443 1 233344444444554433332333445
Q ss_pred ccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHh
Q psy11688 192 TVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLF 241 (546)
Q Consensus 192 ~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~ 241 (546)
...|+...+...+.++++..+. +...+..+++..-.-.+..++..++.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE--AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677777777778888876432 33334445554444444444444443
No 99
>KOG2003|consensus
Probab=99.11 E-value=2.4e-10 Score=114.37 Aligned_cols=183 Identities=15% Similarity=0.099 Sum_probs=149.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.+.+.-++.++.++|+..|..|++++|.+.|++|+.-+.. ..+++|.|..+-.+|+.++|+.+|-+.-.+--++.++++
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455667788999999999999999999999999987665 799999999999999999999999999888889999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh-----------------------hhhchHHHH
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI-----------------------KGKLHRKYA 163 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~-----------------------~~~l~~~~~ 163 (546)
.++.+|..+.+...|+++|.++..+-|+++.++..++.++...+...+ .-.+.....
T Consensus 563 qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999877665433 122344455
Q ss_pred HHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHH
Q psy11688 164 YRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFEL 210 (546)
Q Consensus 164 ~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~ 210 (546)
.+.+....++-..+|+......-.+.++...|..+.+++....+-++
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 56666666666677776665544445566667766666666666554
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.11 E-value=6.8e-10 Score=116.16 Aligned_cols=201 Identities=11% Similarity=0.020 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT-----KAYYRR 108 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~-----~a~~~l 108 (546)
...+..+|..+.+.|++++|+..|+++++.+|. ..++..++.++.+.|++++|++.++++++.+|.+. ..+..+
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345566666666666666666666666666553 55666666666666666666666666666665542 234556
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccc-cccccc
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLV-HITVED 187 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~-~i~~~~ 187 (546)
|.++...|++++|++.|+++++.+|++..++..++.++...++.+ +++....+++...|... ......
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-----------~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYA-----------AAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHChhhHHHHHHHH
Confidence 666666666666666666666666666666555555555444432 22223333333333321 111111
Q ss_pred ccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCC
Q psy11688 188 EAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN 249 (546)
Q Consensus 188 ~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~ 249 (546)
+..+...|+...+...+.++++..+ +...+..+|++.-+-.+..+++..+......+|+
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p---~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYP---GADLLLALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 1224455666666666666666532 2233566777665555666777766655444554
No 101
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.09 E-value=2.4e-10 Score=92.29 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=73.8
Q ss_pred HccCHHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHH
Q psy11688 47 KNQAYNKAIELYSAAIEVNP-T--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123 (546)
Q Consensus 47 ~~g~~~~Ai~~~~~al~~~p-~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~ 123 (546)
.+|+|++|+..|+++++.+| + ...++++|.||+++|+|++|+..+++ .+.+|.++..++.+|.|+..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 36899999999999999999 3 67788899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHh
Q psy11688 124 DYEAV 128 (546)
Q Consensus 124 ~~~ka 128 (546)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 102
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=9.3e-10 Score=110.87 Aligned_cols=104 Identities=17% Similarity=0.112 Sum_probs=96.1
Q ss_pred cCHHHHHHHHHHHHHh---CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHH
Q psy11688 49 QAYNKAIELYSAAIEV---NPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123 (546)
Q Consensus 49 g~~~~Ai~~~~~al~~---~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~ 123 (546)
++.+.++..+.++|.. +|. +.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678899999999964 442 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 124 DYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 124 ~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.|+++++++|++..++.+++.++...+++
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999988777766
No 103
>KOG1125|consensus
Probab=99.08 E-value=1.5e-09 Score=112.49 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=141.3
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHH------------
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAI------------ 95 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al------------ 95 (546)
.++|+.+++|..+|.+....++-..||..+.+|++++|+ -.++..||.+|...|--.+|+..+.+-|
T Consensus 313 kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 578888888888888888888888888888888888884 7888888888877777777776666543
Q ss_pred -----------------------------HhCC--CcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhccccc
Q psy11688 96 -----------------------------ELDQ--TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTE 144 (546)
Q Consensus 96 -----------------------------~l~p--~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~ 144 (546)
..+| .+++.+.-||.+|...++|++|+.||+.||+.+|+|...|..++.
T Consensus 393 ~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 393 GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 2334 456677778888889999999999999999999999999999998
Q ss_pred chhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHHhCC
Q psy11688 145 CNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGL 213 (546)
Q Consensus 145 ~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~ 213 (546)
.+..-.+. .+++..+.+++.-.|.++++.-..+-.++-+|....+...|..+|.....
T Consensus 473 tLAN~~~s-----------~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 473 TLANGNRS-----------EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HhcCCccc-----------HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 87655444 36777888899999999999888888888899988888888888876543
No 104
>KOG4642|consensus
Probab=99.08 E-value=2.8e-10 Score=105.61 Aligned_cols=100 Identities=32% Similarity=0.436 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
..++.+.+.|+.+|..+.|..||.+|.+||.++|+ +..|.|+|.||+++++++.+..++.+|++++|+..++++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34677889999999999999999999999999997 78999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHhhccC
Q psy11688 112 YMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~ 132 (546)
......|++|+..+.+|..+.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHhhccccHHHHHHHHHHHHH
Confidence 999999999999999996653
No 105
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.08 E-value=1.3e-10 Score=113.33 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=52.7
Q ss_pred hhCcchhhhHHHHHHHHHHhcC----C--CCCcceeeccccCCCCCchHHHHHHHHHhcccCCC-cEEEEcCCC
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKI----L--NLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPN-HFFMARVEC 527 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~----~--~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~-~~~~~rgnh 527 (546)
..|||||++. .|..+++... . .....+||||||||||++|.||+.+|.+++..+|. .+++|||||
T Consensus 6 aIGDIHG~~d--~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNH 77 (304)
T cd07421 6 CVGDIHGYIS--KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNH 77 (304)
T ss_pred EEEeccCCHH--HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCC
Confidence 4699999954 4666665321 1 22457999999999999999999999999999986 688999999
No 106
>PRK15331 chaperone protein SicA; Provisional
Probab=99.07 E-value=1.1e-09 Score=97.47 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=100.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy11688 27 VSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~ 105 (546)
+..-.++..+..+..|-.++.+|++++|...|.-....+| +...+..+|.|+..+++|++|+..|..|..++++++.+.
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 3445667788889999999999999999999999999999 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhccCCCCcc
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 137 (546)
+..|.||..+|+.++|+.+|+.++. .|++..
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999999999998 454433
No 107
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.07 E-value=1.6e-10 Score=111.02 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=52.0
Q ss_pred hhCcchhhhHHHHHHHHHHhcCC--------CCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKIL--------NLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
.-|||||. +..|.++++.... ++...+||+|||||||++|.||+.+|..++. +.+++++||||
T Consensus 3 vIGDIHG~--~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNH 73 (222)
T cd07413 3 FIGDIHGH--AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNH 73 (222)
T ss_pred EEEeccCC--HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccC
Confidence 46899998 4558888876543 2467899999999999999999999999864 34789999999
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=2.9e-09 Score=97.98 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a 104 (546)
......+..+...|..+...|++++|+..|++|+.+.|+ +.++.++|.++..+|++++|+..++++++++|.+..+
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 345557888999999999999999999999999998764 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HhcChH-------HHHHHHHHhhccCCCCc
Q psy11688 105 YYRRAAAYM-------SLGKFK-------LALRDYEAVHKARPNDK 136 (546)
Q Consensus 105 ~~~lg~~~~-------~~g~~~-------eA~~~~~kal~l~P~~~ 136 (546)
+..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999 777766 56666667778887543
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=1.1e-09 Score=96.65 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 56 ELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 56 ~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
..|+++++.+|+ ..+.+.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468899999995 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhcccccchhhhhhh
Q psy11688 135 DKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 135 ~~~~~~~l~~~~~~l~~~ 152 (546)
+...+..++.++...++.
T Consensus 84 ~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEP 101 (135)
T ss_pred ChHHHHHHHHHHHHcCCH
Confidence 999999999999877766
No 110
>KOG0551|consensus
Probab=99.06 E-value=2e-09 Score=104.54 Aligned_cols=107 Identities=36% Similarity=0.483 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEV---NPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
-+.|+.+...||.+|+.++|..|+..|++.|.. ||+ +..|.|||.|.+.+|+|..|+.++.+|+.++|.+.++++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 357899999999999999999999999999986 443 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
+-|.|++.+.++++|..+.+..++++-+...+
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999999988877655444
No 111
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=1.9e-09 Score=108.95 Aligned_cols=141 Identities=13% Similarity=0.026 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTE-AIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g-~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
-.++..+++--.-..+...+++++|+..++++|+++|+ ..+|..++.++..++ ++++|+..++++++.+|++..+|..
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 34455555544445577788999999999999999995 899999999999998 6899999999999999999999999
Q ss_pred HHHHHHHhcCh--HHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccc
Q psy11688 108 RAAAYMSLGKF--KLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLV 181 (546)
Q Consensus 108 lg~~~~~~g~~--~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~ 181 (546)
++.++..+++. ++++..++++++++|+|..++...+.+...++.++ +.++.+.+++..+|.-.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~-----------eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE-----------DELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHCCCch
Confidence 99999999874 78899999999999999999999999998776652 34455555565555433
No 112
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=1e-09 Score=101.83 Aligned_cols=125 Identities=13% Similarity=-0.002 Sum_probs=113.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIEL--DQTYTKA 104 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l--~p~~~~a 104 (546)
.+.+|+...++..+|..|.+.|+.+.|-+.|++|+.++|+ ..++.|.|.-+..+|+|++|.+.|++|+.. -|.-+..
T Consensus 62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t 141 (250)
T COG3063 62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT 141 (250)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence 4667888889999999999999999999999999999995 899999999999999999999999999975 2456788
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
|-++|.|..++|+++.|...|+++++++|+++.....++..+...+++
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999888887777665555
No 113
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.02 E-value=2.5e-09 Score=121.55 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
+|..+.++...|..+.+.|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..++++++.+|+++. ++.+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 4455667899999999999999999999999999995 889999999999999999999999999999999999 99999
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
.++...|++++|+..++++++++|+++.++..++.++.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998877776654
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=1.9e-09 Score=102.09 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=119.2
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy11688 23 APKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTY 101 (546)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~ 101 (546)
...++....+++.+.+...|...++.|+|.+|+..+.+|.+++| |+.+|.-+|.+|.++|++++|-..|.+++++.|+.
T Consensus 88 ~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 88 VLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence 33444566777777777799999999999999999999999999 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh
Q psy11688 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 102 ~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
+.+..++|..|.-.|+++.|...+.++...-+.+..+..+++.+....++...
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999999999999999999888899999998888877776643
No 115
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.00 E-value=2.2e-09 Score=112.40 Aligned_cols=118 Identities=13% Similarity=0.094 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY----TKAYYRRA 109 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~----~~a~~~lg 109 (546)
....+.+|..+...|++++|+..|.++++.+|+ ..++..+|.++...|++++|+..++++++..+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344455666666777777777777777777764 5666777777777777777777777666643221 24566667
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.+|...|++++|+..|+++++.+|.+..++..++.++...++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 157 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW 157 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence 7777777777777777777766666666666666555555444
No 116
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.00 E-value=4.7e-10 Score=108.33 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=57.5
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
.|||||+| ..|..+++.....+...+||+|||||||+.|.||+.++..++.. |..++++||||
T Consensus 3 igDiHg~~--~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNH 65 (225)
T cd00144 3 IGDIHGCL--DDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNH 65 (225)
T ss_pred EeCCCCCH--HHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCc
Confidence 58999994 56888888877778899999999999999999999999999987 99999999999
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=1.5e-09 Score=96.29 Aligned_cols=86 Identities=9% Similarity=0.034 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
-...+.+|..++..|++++|.+.|+.++.+||.+...|+++|.|+..+|+|++|+.+|.+|+.++|+++....+.+.|+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh
Q psy11688 148 IVKRMQ 153 (546)
Q Consensus 148 ~l~~~~ 153 (546)
.+++.+
T Consensus 115 ~lG~~~ 120 (157)
T PRK15363 115 ACDNVC 120 (157)
T ss_pred HcCCHH
Confidence 988773
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=1.2e-09 Score=83.42 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=46.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCc
Q psy11688 73 NRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136 (546)
Q Consensus 73 nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 136 (546)
.+|..+++.|++++|++.++++++.+|+++++++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677777777777777777777777777777777777777777777777777777777777653
No 119
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.98 E-value=9.4e-10 Score=110.00 Aligned_cols=122 Identities=19% Similarity=0.174 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
.++..+...|..+.+.|++++|+..|++|++.+|+ ..+...++.++...|++++|.+.+....+..|+++..+..+|.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45667777888888888888888888888888885 77777788888888888887777777777777777777788888
Q ss_pred HHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh
Q psy11688 112 YMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
+..+|++++|+.+|+++++.+|+|+.++..++.++...++.+.
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred hcccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888888888888888888888777776643
No 120
>KOG0624|consensus
Probab=98.96 E-value=2e-08 Score=97.84 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
.-..+......++..|++..||...+..+++.| ++..+..+|.||...|+...|+.+.+.+-++..++.+++|..+..+
T Consensus 154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 344567777788899999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh-hhhchHHHHHHHHHHHHhhhhcCCcccccccc
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI-KGKLHRKYAYRILMDIKALFMTQDSLVHITVE 186 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~-~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~ 186 (546)
+..|+.+.++...+++|+++|+....+-....+.+..+.++. ...+..+.+...++...++++.+|....+...
T Consensus 234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 999999999999999999999987765544444444444443 34455667888899999999999986665544
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.95 E-value=1e-08 Score=100.75 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=95.4
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHH
Q psy11688 35 AEKLKAEANEH-FKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQT---YTKAYY 106 (546)
Q Consensus 35 a~~~~~~g~~~-~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~---~~~a~~ 106 (546)
....++.|..+ ++.|+|++|+..|++.++..|+ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45668888876 6789999999999999999995 589999999999999999999999999999887 477899
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
.+|.++..+|++++|++.|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999877653
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.95 E-value=1.2e-08 Score=99.17 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKT--------EAIGYALNDASKAIELDQ 99 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~--------g~~~~Al~~~~~al~l~p 99 (546)
+...++++.+|..+++.|++++|+..|+++++.+|+ ..+++.+|.++... |++++|++.++++++.+|
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 444578899999999999999999999999999995 35899999999987 899999999999999999
Q ss_pred CcHHHH-----------------HHHHHHHHHhcChHHHHHHHHHhhccCCCC---cchhcccccchhhhhhhh
Q psy11688 100 TYTKAY-----------------YRRAAAYMSLGKFKLALRDYEAVHKARPND---KDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 100 ~~~~a~-----------------~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~~l~~~~~~l~~~~ 153 (546)
++..++ +.+|.+|...|++++|+..|+++++..|+. +.++..++.++..+++.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 986543 467889999999999999999999998765 468888888888877764
No 123
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.94 E-value=7.5e-09 Score=94.24 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=98.7
Q ss_pred ccccccccchhHhhH---HHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHH--hhhhhcCCCeEEEEccccccchhh
Q psy11688 190 KFTVCGDIHGQFYDL---MNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTL--FGFKLLYPNHFFMARGNHESAYMN 264 (546)
Q Consensus 190 ~~~viGDihg~~~~l---~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l--~~l~~~~p~~v~~lrGNHE~~~~~ 264 (546)
+++++||+|+..... ...+.........+.++++||+++++..+.+..... .......+..+++++||||.....
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 478999999999877 333333223335567999999999999988777654 444555677899999999998765
Q ss_pred hhhcchhhhh----------------------------------hhchHHHHHHHHHhhccccceeeecceEEEEeCCcc
Q psy11688 265 QIYGFEGEVK----------------------------------SKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLF 310 (546)
Q Consensus 265 ~~~~~~~e~~----------------------------------~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~ 310 (546)
..+....... ...........................++++|.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~ 161 (200)
T PF00149_consen 82 SFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPY 161 (200)
T ss_dssp HHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSS
T ss_pred cccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCCC
Confidence 4322111100 000111222222223333334445668999999993
Q ss_pred CCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccc
Q psy11688 311 SSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEV 383 (546)
Q Consensus 311 ~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~ 383 (546)
+........ .....+.+.+..++++.++++++.||+-
T Consensus 162 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~GH~H 198 (200)
T PF00149_consen 162 SSSSDSSSY------------------------------------GNESKGREALEELLKKYNVDLVLSGHTH 198 (200)
T ss_dssp TTSSSTHHH------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEESSS
T ss_pred Ccccccccc------------------------------------chhhccHHHHHHHHhhCCCCEEEeCcee
Confidence 211111110 2235677889999999999999999985
No 124
>KOG2076|consensus
Probab=98.91 E-value=2.7e-08 Score=107.84 Aligned_cols=121 Identities=21% Similarity=0.190 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
.....+...|+.++.+|++++|...+.++|+++|. +.+|+.+|.+|-++|+.++|+...-.|--++|++.+-|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34778899999999999999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 112 YMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
..++|.+++|+-+|.+|++.+|.+....+....+++..+...
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence 999999999999999999999999998888888888776654
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.90 E-value=2.4e-08 Score=97.35 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYY 106 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~ 106 (546)
.++.++..|..+++.|+|++|++.|++++...|. ..+.+.+|.+|++.++|++|+..+++.++..|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4566889999999999999999999999999995 4667999999999999999999999999999976 45799
Q ss_pred HHHHHHHHhcC------------------hHHHHHHHHHhhccCCCCcchh---cccccchhhhhhhhh--hh-hchHHH
Q psy11688 107 RRAAAYMSLGK------------------FKLALRDYEAVHKARPNDKDAK---AKFTECNKIVKRMQI--KG-KLHRKY 162 (546)
Q Consensus 107 ~lg~~~~~~g~------------------~~eA~~~~~kal~l~P~~~~~~---~~l~~~~~~l~~~~~--~~-~l~~~~ 162 (546)
.+|.++..+++ ..+|+..|++.++..|++.-+. ..+..+...+.+.+. +. .+.++.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999766541 2578899999999999876543 333333333333222 11 223334
Q ss_pred HHHHHHHHHhhhhcCCcccc
Q psy11688 163 AYRILMDIKALFMTQDSLVH 182 (546)
Q Consensus 163 ~~~il~~a~eiL~~~p~~~~ 182 (546)
...++..++.++...|....
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred hHHHHHHHHHHHHHCCCCch
Confidence 45566666666666665433
No 126
>KOG1125|consensus
Probab=98.89 E-value=2.8e-08 Score=103.12 Aligned_cols=213 Identities=17% Similarity=0.121 Sum_probs=147.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Q psy11688 39 KAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK 117 (546)
Q Consensus 39 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 117 (546)
+..|..+++.|+..+|+-+|+.|++.+| ++.+|..||.++...++-..|+..+++++++||+|-+++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 7799999999999999999999999999 499999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccc--ccccccccccccc
Q psy11688 118 FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVH--ITVEDEAKFTVCG 195 (546)
Q Consensus 118 ~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~--i~~~~~~~~~viG 195 (546)
-.+|..++.+-+...|....... +......+.. ....+......+.+.+.++-...|..+. +....+-.+..-|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~--a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS--AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc--cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999999998875332211 1011000000 1223444445555555555555553222 2222222233444
Q ss_pred ccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEcccc
Q psy11688 196 DIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNH 258 (546)
Q Consensus 196 Dihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNH 258 (546)
++..+.+++..+|.. .|.+-..+--||-..--|..+.|+|.-......+.|..|- .|=|=
T Consensus 445 efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNl 504 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNL 504 (579)
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhh
Confidence 444555555555543 2322222233898889999999999966655556676443 45443
No 127
>KOG0550|consensus
Probab=98.89 E-value=2.1e-09 Score=107.11 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=124.8
Q ss_pred cccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------HHHHHHH
Q psy11688 8 LEYLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-------------AIYYANR 74 (546)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------------~~a~~nl 74 (546)
..|+.+....+.+....-.+...++.++++++..|.+++-..+.+.|+..|.+++.++|+ ...+.+.
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 344444444444444444456778888999999999999999999999999999999993 3567788
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 75 SFAYLKTEAIGYALNDASKAIELDQTY----TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 75 a~~~~~~g~~~~Al~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
|.-.++.|+|.+|.+.|..||.+||++ +..|.++|.+..++|+..+|+...+.|++++|....++...++|+..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 4569999999999999999999999999999999999999999998887
Q ss_pred hhh
Q psy11688 151 RMQ 153 (546)
Q Consensus 151 ~~~ 153 (546)
.++
T Consensus 336 ~~e 338 (486)
T KOG0550|consen 336 KWE 338 (486)
T ss_pred HHH
Confidence 764
No 128
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.89 E-value=2.1e-09 Score=104.35 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=52.5
Q ss_pred HhhCcchhhhHHHHHHHHHHhcCCC----------CCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 460 KAQGKLHRKYAYRILMDIKKKKILN----------LDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-..|||||+| ..|..+++..+.. +..+++|+|||||||+.|.||+.+|..++.. ..++++||||
T Consensus 4 ~vigDIHG~~--~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNH 77 (234)
T cd07423 4 DIIGDVHGCY--DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNH 77 (234)
T ss_pred EEEEECCCCH--HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCc
Confidence 4579999995 4488888776443 2468999999999999999999999988743 3589999999
No 129
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=9.4e-09 Score=78.44 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=59.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy11688 39 KAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT 102 (546)
Q Consensus 39 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~ 102 (546)
+.+|..+++.|+|++|+..|+++++.+|+ ..+++.+|.++..+|++++|++.++++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35799999999999999999999999996 89999999999999999999999999999999975
No 130
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.88 E-value=9.8e-09 Score=105.26 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-H---HHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy11688 20 SNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-A---IYYANRSFAYLKTEAIGYALNDASKAI 95 (546)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~---~a~~nla~~~~~~g~~~~Al~~~~~al 95 (546)
+++.++...+.+|+.+++++++|..+++.|+|++|+..|++|++++|+ + .+|+|+|.+|..+|++++|++++++|+
T Consensus 60 ~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 60 SSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344446789999999999999999999999999999999999996 4 469999999999999999999999999
Q ss_pred HhC
Q psy11688 96 ELD 98 (546)
Q Consensus 96 ~l~ 98 (546)
++.
T Consensus 140 els 142 (453)
T PLN03098 140 RDY 142 (453)
T ss_pred Hhc
Confidence 984
No 131
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.87 E-value=2.3e-09 Score=104.54 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=54.9
Q ss_pred hCcchhhhHHHHHHHHHHhcCCC-CCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccccch
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILN-LDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLFGF 534 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~gf 534 (546)
.|||||.| .-|..+++..... ..+.++|+||+||||+.|.||+.+|..++ .++++++||| ++..+|+
T Consensus 4 IGDIHG~~--~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~ 75 (257)
T cd07422 4 IGDIQGCY--DELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGI 75 (257)
T ss_pred EECCCCCH--HHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCc
Confidence 58999984 5588888776654 57789999999999999999999999887 4689999999 4444454
No 132
>KOG2002|consensus
Probab=98.83 E-value=1.2e-08 Score=111.21 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=147.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~ 105 (546)
....|+++-++.-+|...|.+|+|-.|+.+|.+|+.++|. +.....+|.|+.++++.+.|+..+++|+++||++..++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 4677888889999999999999999999999999999994 78889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---hHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhh--------------------------
Q psy11688 106 YRRAAAYMSLGK---FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKG-------------------------- 156 (546)
Q Consensus 106 ~~lg~~~~~~g~---~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~-------------------------- 156 (546)
..||..-....+ +..|+..+.++...+|+||.++..++.-+..-+++....
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999988877554 678999999999999999999988887665444443210
Q ss_pred hchHHHHHHHHHHHHhhhhcCCcc-cccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccc
Q psy11688 157 KLHRKYAYRILMDIKALFMTQDSL-VHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDF 226 (546)
Q Consensus 157 ~l~~~~~~~il~~a~eiL~~~p~~-~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~ 226 (546)
.-..++..++...+.+.+...++. +-.....+.-.+.-||+.+....+.++++..+. ....+..||-+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--~~etm~iLG~L 385 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN--NYETMKILGCL 385 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc--hHHHHHHHHhH
Confidence 111223444555555556555554 222223344456667777777777777776432 23345555543
No 133
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.9e-08 Score=96.42 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTE---AIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g---~~~~Al~~~~~al~l~p~~~~a 104 (546)
..+|++++-|..+|..|+..|+++.|...|.+|+++.|+ +..+..+|.+++... .-.+|.+.+++++++||.+.++
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 678999999999999999999999999999999999995 899999999887754 4457999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
.+.+|..++..|+|++|+..++..+...|.+.+-.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999999999998776644
No 134
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.82 E-value=6.1e-08 Score=84.61 Aligned_cols=105 Identities=27% Similarity=0.359 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT---KAYYR 107 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~---~a~~~ 107 (546)
+..++..|...++.|+|++|++.++......|- ..+...++.+|++.++|++|+..+++-++++|+++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 567899999999999999999999999999992 79999999999999999999999999999999875 57999
Q ss_pred HHHHHHHhcC---------------hHHHHHHHHHhhccCCCCcchh
Q psy11688 108 RAAAYMSLGK---------------FKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 108 lg~~~~~~g~---------------~~eA~~~~~kal~l~P~~~~~~ 139 (546)
+|.++..+.. ..+|...|++.++.-|++..+-
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999987 8899999999999999877653
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.82 E-value=9.3e-08 Score=90.80 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT---KAYY 106 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~---~a~~ 106 (546)
.++.++..|..++..|+|++|+..|++.+...|+ ..+.+.+|.++.+.|+|++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4678999999999999999999999999999994 78999999999999999999999999999999864 6899
Q ss_pred HHHHHHHHhcC-----------hHHHHHHHHHhhccCCCCcchhcc---cccchhhhhhhhh---hhhchHHHHHHHHHH
Q psy11688 107 RRAAAYMSLGK-----------FKLALRDYEAVHKARPNDKDAKAK---FTECNKIVKRMQI---KGKLHRKYAYRILMD 169 (546)
Q Consensus 107 ~lg~~~~~~g~-----------~~eA~~~~~kal~l~P~~~~~~~~---l~~~~~~l~~~~~---~~~l~~~~~~~il~~ 169 (546)
.+|.++..+.. ..+|+..|++.++..|++.-+... +..+...+.+.+. .-.+..+....++..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999877643 358999999999999998765433 3333333322221 112333445556666
Q ss_pred HHhhhhcCCcccc
Q psy11688 170 IKALFMTQDSLVH 182 (546)
Q Consensus 170 a~eiL~~~p~~~~ 182 (546)
+..++...|+...
T Consensus 164 ~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 164 FQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHSTTSHH
T ss_pred HHHHHHHCCCCch
Confidence 7777777766443
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=2.6e-08 Score=110.28 Aligned_cols=109 Identities=9% Similarity=-0.069 Sum_probs=103.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.+-.|+.+.+..+.|..+.+++++++|...++++++.+|+ +.+++.+|.++.++|+|++|+..|+++++.+|++.+++.
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 4678899999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCc
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDK 136 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 136 (546)
.+|.++..+|+.++|...|++|++....-.
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 999999999999999999999998865433
No 137
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.81 E-value=2.9e-08 Score=111.82 Aligned_cols=135 Identities=10% Similarity=-0.016 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTA-IYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
.+...+..+...+++|+++.|+..|.++++.+|+. .+..-++.++...|++++|+..+++++.-+|.+..+...+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34577899999999999999999999999999973 33338888888999999999999999933344444444458899
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCc
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDS 179 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~ 179 (546)
..+|++++|++.|+++++.+|+++.++..++..+...++. .++++.+.++....|.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-----------~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG-----------GVVLKQATELAERDPT 168 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-----------HHHHHHHHHhcccCcc
Confidence 9999999999999999999999999887665554444333 2444445555555554
No 138
>KOG2002|consensus
Probab=98.80 E-value=2.4e-08 Score=108.92 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY-TK 103 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~-~~ 103 (546)
.++++++.++..+++-+|-.|+|+.+...+..|+.-.-+ +..+|.+|.+|..+|+|++|.++|.++++.+|++ .-
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 566777888999999999999999999999999986542 7889999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
+++.+|+.|...|++++|+.+|+++++..|++.+....++.++...
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 8999999999999999999999999999999999999999888665
No 139
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.79 E-value=6e-09 Score=93.27 Aligned_cols=142 Identities=35% Similarity=0.498 Sum_probs=116.1
Q ss_pred hhhhhcchhhhhhhchHH-HHHH---HHHhhccccceeeecc-eEEEEeCCccCCC-CCChhhhhccCCCC--CCCCchh
Q psy11688 263 MNQIYGFEGEVKSKYTDL-MAQF---FTEVYNWLPLCHCINN-KVLVMHGGLFSSD-NVTLEDIRTIDRNR--QPPDEGL 334 (546)
Q Consensus 263 ~~~~~~~~~e~~~~~~~~-~~~~---~~~~~~~lP~~~~~~~-~~~~vHgGi~~~~-~~~~~~i~~~~r~~--~~~~~~~ 334 (546)
+...+++.+++...+... .|.. +.++|+.||+.+++.. .++|.||++ ++. ...+++++.+.|.. .....+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g~ 81 (155)
T COG0639 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAGH 81 (155)
T ss_pred hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCccc
Confidence 455567776665555443 4555 8899999999999988 899999998 554 47788888888775 6677788
Q ss_pred hhhhhcCCCCC--CCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCC
Q psy11688 335 MCELLWSDPQI--PNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYC 406 (546)
Q Consensus 335 ~~dllWsdp~~--~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~ 406 (546)
..+.+|++|.. ...|.++++|.+..+ ++.+..|+.....+.+.++|+....++...+++..+|.||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 82 THDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 88889999885 578899999998877 788889998888888999999999999988887899999999986
No 140
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=98.78 E-value=6.9e-09 Score=101.37 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=54.8
Q ss_pred hhCcchhhhHHHHHHHHHHhcCC-CCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccccch
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKIL-NLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLFGF 534 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~gf 534 (546)
..|||||.| .-|.++++.... +....++|+||+||||++|.||+.++..++ ..+++++||| ++..+|+
T Consensus 5 vIGDIHGc~--daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~ 77 (279)
T TIGR00668 5 LIGDLHGCY--DELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI 77 (279)
T ss_pred EEEcccCCH--HHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence 469999985 558888887664 346789999999999999999999998764 3577999999 4445564
No 141
>KOG0553|consensus
Probab=98.78 E-value=2e-08 Score=97.00 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
+.-+-+-|.-+++.++|++|+..|++||+++|.++-.|.++|.+|.++|.|+.|++++++|+.+||....+|..++.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccc
Q psy11688 148 IVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLV 181 (546)
Q Consensus 148 ~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~ 181 (546)
.+++++ .+++.+++.|..+|+-.
T Consensus 161 ~~gk~~-----------~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 161 ALGKYE-----------EAIEAYKKALELDPDNE 183 (304)
T ss_pred ccCcHH-----------HHHHHHHhhhccCCCcH
Confidence 887763 34445666666666543
No 142
>KOG1173|consensus
Probab=98.77 E-value=1.3e-08 Score=105.22 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP----T----AIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p 99 (546)
.+-.|.++-.+.+.|..+|..+.|.+|+.+|.++++.-+ . ...+.|+|.++.+++++++|+..++++|.+.|
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 345566677788899999999999999999999985333 1 46699999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 100 ~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
.++.+|...|.+|..+|+++.|+..|.|+|.++|++.-+...++.+
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999987665555433
No 143
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.77 E-value=2.4e-08 Score=99.82 Aligned_cols=199 Identities=18% Similarity=0.120 Sum_probs=96.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELD--QTYTKAY 105 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~--p~~~~a~ 105 (546)
...++..+..+...+.. ...+++++|+..+.++.+..+++..+.....++...++++++...++++.... |+++..|
T Consensus 71 ~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 149 (280)
T PF13429_consen 71 LASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFW 149 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 34444455555555555 68889999999988888877777777777888888999999998888877665 6778888
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccc
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITV 185 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~ 185 (546)
..+|.++.+.|+.++|+++|+++++++|+++.+...+..++...++. ..+..++....+.....|.+..
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~--------~~~~~~l~~~~~~~~~~~~~~~--- 218 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY--------DEAREALKRLLKAAPDDPDLWD--- 218 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH--------HHHHHHHHHHHHH-HTSCCHCH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh--------HHHHHHHHHHHHHCcCHHHHHH---
Confidence 88999999999999999999999999999998888887777655554 3355566666655555555433
Q ss_pred ccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHH
Q psy11688 186 EDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTL 240 (546)
Q Consensus 186 ~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l 240 (546)
..+..+..+|+...++..+.++++..+. +...++.++|....-...-++..+.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~--d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPD--DPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHT------------
T ss_pred HHHHHhcccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 2344567788888888888888876432 2334667778776666555555443
No 144
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.76 E-value=5.7e-08 Score=110.59 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=61.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------c
Q psy11688 42 ANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYALNDASKAIELDQT---------------Y 101 (546)
Q Consensus 42 g~~~~~~g~~~~Ai~~~~~al~~~p~-----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~---------------~ 101 (546)
|..++..|++++|+..|+++++.+|. ......++.++.+.|++++|++.++++.+.+|. .
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 55555556666666666665555542 234455555555566666666666655555541 1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 102 ~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
..++..+|.++...|++++|++.+++++...|++..++..++.++...++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 234555566666666666666666666666666655555555555444433
No 145
>KOG4555|consensus
Probab=98.76 E-value=1.4e-07 Score=79.81 Aligned_cols=103 Identities=28% Similarity=0.327 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT----KAYY 106 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~----~a~~ 106 (546)
-+....+-.+|..+...|+.+.|++.|.+|+.+-|. +.+|.|+|.++.-+|+.++|+.++++|+++.-+.. .+|.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 355667888999999999999999999999999994 99999999999999999999999999999975543 4789
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
.+|.+|..+|+-+.|..+|+.|-++...
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999999999887653
No 146
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.75 E-value=8.3e-09 Score=99.03 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=49.9
Q ss_pred HhhCcchhhhHHHHHHHHHHhcCCC-CCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 460 KAQGKLHRKYAYRILMDIKKKKILN-LDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-..|||||.| ..|.++++..... ....++|+||+||||++|.||+.+|.. + .++.+||||
T Consensus 20 ~vigDIHG~~--~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~-----~-~~~~v~GNH 80 (218)
T PRK11439 20 WLVGDIHGCF--EQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE-----H-WVRAVRGNH 80 (218)
T ss_pred EEEEcccCCH--HHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc-----C-CceEeeCch
Confidence 5679999994 5588888887655 467899999999999999999999864 1 367999999
No 147
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=1.5e-07 Score=96.33 Aligned_cols=122 Identities=17% Similarity=0.172 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
|....+++-.+..++..|++++|...++..+...|+ +..+..++.++++.++..+|++.+++++.++|+.+..++++|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 456678899999999999999999999999999995 8899999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 111 AYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
+|.+.|++++|++.+++.+.-+|+++..|..+++.+...+...
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999999999999999999999998777653
No 148
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.74 E-value=1.4e-08 Score=96.48 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=53.7
Q ss_pred hCcchhhhHHHHHHHHHHhcC--------CCCCcceeeccccCCCCCchHHHHHHHHHhccc---CCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKI--------LNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLL---YPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~---~~~~~~~~rgnh 527 (546)
.|||||.| +.|..+++..+ ....+.++|+||+||||+++.||+.+|..++.. .+.++++++|||
T Consensus 3 i~DIHG~~--~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNH 77 (208)
T cd07425 3 IGDLHGDL--DAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNH 77 (208)
T ss_pred EeCccCCH--HHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCC
Confidence 58999994 55777877654 346789999999999999999999999998754 456799999999
No 149
>KOG1129|consensus
Probab=98.74 E-value=3e-07 Score=89.27 Aligned_cols=118 Identities=13% Similarity=-0.030 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
...-.+.|.+|++.|.+.+|...++.+++..|....+..++.+|.+..+.+.|+..+...++..|.+.......|.++..
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 34447889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 115 LGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
++++++|.+.|+.+++++|.+.++...++.-+.--++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh
Confidence 99999999999999999999999877777655544443
No 150
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.1e-07 Score=90.33 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
..+|++... ...+..+...|+-+.+.....++...+|. ..+....|......|+|.+|+..++++.+++|+++++|..
T Consensus 61 ~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 61 LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 445665666 67788888888888888888887777774 6677679999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
+|.+|.++|++++|...|.+++++.|+++.+..+++-.+..-++.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 999999999999999999999999999999999999988877766
No 151
>PHA02239 putative protein phosphatase
Probab=98.73 E-value=1.6e-08 Score=97.77 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=51.7
Q ss_pred hhCcchhhhHHHHHHHHHHhcCC--CCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKIL--NLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
..|||||++ ..|.++++.... .+...++|+|||||||+.|.||+..|+.++. .+..++.++|||
T Consensus 5 ~IsDIHG~~--~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNH 70 (235)
T PHA02239 5 VVPDIHGEY--QKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNH 70 (235)
T ss_pred EEECCCCCH--HHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCc
Confidence 468999985 447777766532 2457899999999999999999999999753 455789999999
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=6.1e-08 Score=108.31 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=115.8
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy11688 20 SNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELD 98 (546)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~ 98 (546)
...-...+.+=+|.+.+++..+...+...+++++|+...+.+++..|+ ..+|+.+|..+.+.+++++|... +++.+-
T Consensus 16 e~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 16 EKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred hhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 344455666778889999999999999999999999999999999997 78899999999999999887766 677666
Q ss_pred CCcH-------------------HHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh
Q psy11688 99 QTYT-------------------KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 99 p~~~-------------------~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
+.+. .|++.+|.||.++|++++|.+.|+++++++|+|+.++.+++-.+... ..+.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 6666 89999999999999999999999999999999999999999888766 5543
No 153
>KOG1173|consensus
Probab=98.72 E-value=1e-07 Score=98.64 Aligned_cols=180 Identities=13% Similarity=0.018 Sum_probs=137.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.+..|+++-.|+..|..|+.-|++++|.++|.||..+||. ..+|...|.+|.-.+..++|+..|.+|-++-|..-...+
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L 384 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL 384 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence 4678888999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccc
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVE 186 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~ 186 (546)
.+|.=|..++.++-|.+.|.+|+.+.|+++-++..++-+....+.+..+... ....+..++.++.+-+....+...
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~----f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKY----FQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHH----HHHHHHHhhhccccccchhHHHHh
Confidence 9999999999999999999999999999999998888877655555332211 111122222222222211122222
Q ss_pred cccccccccccchhHhhHHHHHHHh
Q psy11688 187 DEAKFTVCGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 187 ~~~~~~viGDihg~~~~l~~il~~~ 211 (546)
.|-....++...+++..+.+.+...
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 2333444555556666666666553
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.71 E-value=2.9e-08 Score=77.53 Aligned_cols=65 Identities=32% Similarity=0.499 Sum_probs=47.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 75 SFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 75 a~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
..+|.+.++|++|++.++++++++|+++.+|+.+|.++..+|++++|+++++++++..|+++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777666544
No 155
>KOG4162|consensus
Probab=98.71 E-value=1e-07 Score=101.89 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCcHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN--DASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~--~~~~al~l~p~~~~a~~~lg 109 (546)
..+..|+..|..+..+|+.++|.+.|..|+.+||+ ......+|.++.+.|+..-|.. ....|+++||.|.++|+.+|
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 33445566666666666666666666666666664 5666666666666666555555 66666666666666666666
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCc
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDK 136 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~ 136 (546)
.++..+|+.++|.++|..|+++++.+|
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCC
Confidence 666666666666666666666666554
No 156
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.70 E-value=1.8e-08 Score=99.37 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=53.4
Q ss_pred hhCcchhhhHHHHHHHHHHhcCC-CCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC----cccccch
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKIL-NLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC----IFTLFGF 534 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh----~~~~~gf 534 (546)
..|||||.|. -|..+++.... +....++|+||+||||+.|.||+.+|..+ +..+++++||| +.-.+|+
T Consensus 5 vIGDIHG~~~--~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~ 77 (275)
T PRK00166 5 AIGDIQGCYD--ELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGI 77 (275)
T ss_pred EEEccCCCHH--HHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCC
Confidence 3589999954 47778776654 34568999999999999999999999876 34689999999 3444554
No 157
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=3.7e-07 Score=78.39 Aligned_cols=95 Identities=20% Similarity=0.016 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQT---YTKAYYRR 108 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~---~~~a~~~l 108 (546)
+++++.|..+-..|+.++|+..|++|++..++ ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 56799999999999999999999999997553 679999999999999999999999999999898 88888889
Q ss_pred HHHHHHhcChHHHHHHHHHhhc
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHK 130 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~ 130 (546)
+.++..+|++++|++.+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=1.4e-07 Score=86.65 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=95.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHh
Q psy11688 42 ANEHFKNQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIELDQT---YTKAYYRRAAAYMSL 115 (546)
Q Consensus 42 g~~~~~~g~~~~Ai~~~~~al~~~p~---~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~~ 115 (546)
.+.+|-.++|..+...+.+.++.++. +.+|+++|.++..+|++++|+..+++++.+.|+ .+.+|+++|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 34456667788888888776666662 788999999999999999999999999999776 345899999999999
Q ss_pred cChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 116 GKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 116 g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
|++++|++.|+++++++|.....+..++.++...++.
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999988888888765543
No 159
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.66 E-value=4.4e-07 Score=95.41 Aligned_cols=216 Identities=10% Similarity=-0.001 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCcHHHH-HHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANR-SFAYLKTEAIGYALNDASKAIELDQTYTKAY-YRR 108 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nl-a~~~~~~g~~~~Al~~~~~al~l~p~~~~a~-~~l 108 (546)
..+++...+..|...+..|+|++|.+...++-+..+++..++.+ +.+..+.|++++|.++++++.+.+|++..+. ...
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 44567777888999999999999998877766654455555555 4554899999999999999999999886443 455
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhh----------hhchHHHHHHH--------HH--
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIK----------GKLHRKYAYRI--------LM-- 168 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~----------~~l~~~~~~~i--------l~-- 168 (546)
+..+...|++++|.+.++++.+.+|+++.++..+..++...++.+.. ..++......+ +.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999888888888777666541 11111111100 11
Q ss_pred -------HHHhhh----hcCCcccccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHH
Q psy11688 169 -------DIKALF----MTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECI 237 (546)
Q Consensus 169 -------~a~eiL----~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l 237 (546)
...+.. ...|+...+....+......|+...+...+.+.++. +++.......|.+- ..++.+.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~~l~~~l~--~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLVLLIPRLK--TNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHhhcc--CCChHHHH
Confidence 111111 122223333333345567788888888888888874 22223233444432 25667778
Q ss_pred HHHhhhhhcCCCeE
Q psy11688 238 FTLFGFKLLYPNHF 251 (546)
Q Consensus 238 ~~l~~l~~~~p~~v 251 (546)
..+..+...+|++.
T Consensus 315 ~~~e~~lk~~P~~~ 328 (398)
T PRK10747 315 KVLRQQIKQHGDTP 328 (398)
T ss_pred HHHHHHHhhCCCCH
Confidence 88888777777653
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.66 E-value=3.6e-08 Score=75.82 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=40.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhc
Q psy11688 79 LKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 79 ~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
++.|++++|++.++++++.+|++.++++.+|.||...|++++|.+.+++++..+|+++.++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666554443
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=3.5e-07 Score=81.89 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
...+...+|..++..|++++|+..|++++...|+ ..+...+|.+++..|++++|+..++. +.-.+-.+.++..+|
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence 3555666777777777777777777777776553 45666777777777777777777654 233333455666677
Q ss_pred HHHHHhcChHHHHHHHHHhh
Q psy11688 110 AAYMSLGKFKLALRDYEAVH 129 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal 129 (546)
.+|...|++++|+..|++|+
T Consensus 126 di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCCHHHHHHHHHHhC
Confidence 77777777777777777664
No 162
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.64 E-value=5.2e-07 Score=81.71 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=61.0
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcch
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFE 270 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 270 (546)
+.+++|+||+...+.++++.... .+.++++||+++++..+. +. ....+++++||||....
T Consensus 2 i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 2 IGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred EEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC-------
Confidence 67899999999999999987643 567999999999998654 11 22458999999997532
Q ss_pred hhhhhhchHHHHHHHHHhhccccceeee---cceEEEEeCCc
Q psy11688 271 GEVKSKYTDLMAQFFTEVYNWLPLCHCI---NNKVLVMHGGL 309 (546)
Q Consensus 271 ~e~~~~~~~~~~~~~~~~~~~lP~~~~~---~~~~~~vHgGi 309 (546)
+..+|....+ +.+++++||..
T Consensus 62 ------------------~~~~p~~~~~~~~g~~i~v~Hg~~ 85 (155)
T cd00841 62 ------------------FPILPEEAVLEIGGKRIFLTHGHL 85 (155)
T ss_pred ------------------cccCCceEEEEECCEEEEEECCcc
Confidence 3445654433 34799999987
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.63 E-value=3.3e-07 Score=88.09 Aligned_cols=106 Identities=20% Similarity=0.142 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYR 107 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~ 107 (546)
++.+++.|..+++.|+|.+|...|..-++..|+ +.++|-+|.+++.+|+|++|...|..+++-.|+. +++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 345899999999999999999999999999995 8999999999999999999999999999998876 567999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhc
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
+|.|...+|+.++|...|+++++..|+...+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999877654
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=3.5e-07 Score=88.92 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT------AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
.++..+-+.|-+..+|++||+.-++...+.+. +..|+.+|..++...+.+.|...+.+|++.||++..|-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 45666777777888888888888888888772 788999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCC-cchhcccccchhhhhhhh
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPND-KDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~l~~~~~~l~~~~ 153 (546)
.++...|+|+.|++.++.+++.||+. +++...+..|+..+++.+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999984 557778888888888774
No 165
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.61 E-value=1.3e-07 Score=97.19 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=64.5
Q ss_pred hCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHhcChHHHHHHHHHhhcc
Q psy11688 64 VNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA---YYRRAAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 64 ~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a---~~~lg~~~~~~g~~~eA~~~~~kal~l 131 (546)
.+|+ +.+++|+|.+|.++|+|++|++.|++|++++|++.++ |+++|.||..+|++++|++++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4564 8999999999999999999999999999999999965 999999999999999999999999998
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=87.11 Aligned_cols=109 Identities=25% Similarity=0.227 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
++.+.+.-++++|..|-..|-+.-|...|++++.+.|+ +.++..+|.-+...|+|+.|.+.|+..+++||.+..++.++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45567888999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
|.+++--|+|+-|.+.+.+-.+.||+++--
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 999999999999999999999999998863
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.60 E-value=3.7e-07 Score=73.08 Aligned_cols=83 Identities=33% Similarity=0.396 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 70 YYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 70 a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
+++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999988888888777666
Q ss_pred hhh
Q psy11688 150 KRM 152 (546)
Q Consensus 150 ~~~ 152 (546)
++.
T Consensus 82 ~~~ 84 (100)
T cd00189 82 GKY 84 (100)
T ss_pred HhH
Confidence 554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=3.6e-07 Score=84.37 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhccccc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTE 144 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~ 144 (546)
+.+++++|..+...|++++|+..+++++++.|+. ..+++.+|.++..+|++++|+..|+++++.+|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 7889999999999999999999999999988763 5689999999999999999999999999999999998888888
Q ss_pred chhhhhhh
Q psy11688 145 CNKIVKRM 152 (546)
Q Consensus 145 ~~~~l~~~ 152 (546)
++...++.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 87766554
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.60 E-value=1.4e-07 Score=72.50 Aligned_cols=67 Identities=22% Similarity=0.182 Sum_probs=60.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 45 HFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 45 ~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
+++.|+|++|+..|+++++.+|+ ..+++.+|.+|++.|++++|.+.+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999994 99999999999999999999999999999999998888777653
No 170
>KOG2003|consensus
Probab=98.59 E-value=3.8e-08 Score=98.85 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhh
Q psy11688 51 YNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVH 129 (546)
Q Consensus 51 ~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal 129 (546)
+.+|-.+-+.|+.++. ++.+..|.|.+-+..|++++|.+.|+.|+.-|....+++++.|..+..+|+.++|+.+|-+..
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 3333344444444333 344555555555555666666666666666665556666666666666666666666666655
Q ss_pred ccCCCCcchhcccccchhhhhhh
Q psy11688 130 KARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 130 ~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.+--++.+++.+++.+++.++..
T Consensus 552 ~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCH
Confidence 55555566666666665555444
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.58 E-value=3e-07 Score=71.74 Aligned_cols=69 Identities=23% Similarity=0.338 Sum_probs=63.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 42 g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
...++++++|++|++.++++++++|+ ..++..+|.++.++|++++|+++++++++.+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46789999999999999999999995 8999999999999999999999999999999999888766543
No 172
>KOG1128|consensus
Probab=98.58 E-value=3.3e-07 Score=97.50 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSL 115 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~ 115 (546)
|.+..|.-.+..++|++|.+.++.+++++|- ...|+++|.|.+++++++.|.++|.+++.++|++.++|.+++.+|...
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 3344455566789999999999999999995 899999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 116 GKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 116 g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
++..+|...+.+|++-+-++..+|.+..-+...++..+
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 99999999999999999889999988888777776653
No 173
>KOG1840|consensus
Probab=98.56 E-value=3.6e-07 Score=96.86 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=129.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 27 VSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV--------NPT-AIYYANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
..+..|........+|..|..+|+|+.|+..+++|++. .|. +....++|..|..+++|.+|+..|++|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35777888888888999999999999999999999998 454 444556999999999999999999999976
Q ss_pred --------CCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC--------CcchhcccccchhhhhhhhhhhhchHH
Q psy11688 98 --------DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN--------DKDAKAKFTECNKIVKRMQIKGKLHRK 161 (546)
Q Consensus 98 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--------~~~~~~~l~~~~~~l~~~~~~~~l~~~ 161 (546)
+|.-..++.++|.+|...|++++|..++++|+++--. -...+..++.++...++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E-------- 342 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE-------- 342 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh--------
Confidence 3445567999999999999999999999999977432 1223334444444444443
Q ss_pred HHHHHHHHHHhhhhcC-----CcccccccccccccccccccchhHhhHHHHHHHh
Q psy11688 162 YAYRILMDIKALFMTQ-----DSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 162 ~~~~il~~a~eiL~~~-----p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~ 211 (546)
.+..++..+.+++..- +.+..+....+..+..+|....+.+-+.+++.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 3334444444444322 2444455555666777788777777777777765
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.55 E-value=3e-07 Score=95.01 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
+...|...+..|+|++|+..|++|++++|+++.+|+.+|.+|..+|++++|+.+++++++++|++..++..++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hh
Q psy11688 151 RM 152 (546)
Q Consensus 151 ~~ 152 (546)
++
T Consensus 85 ~~ 86 (356)
T PLN03088 85 EY 86 (356)
T ss_pred CH
Confidence 76
No 175
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.54 E-value=2.2e-06 Score=90.50 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT-KAYYRR 108 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~-~a~~~l 108 (546)
..+++......|...+..|+++.|.+...++.+..|+ ..++...|.+..++|++++|.+++.++.+..|++. .+....
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 4446677788899999999999999999999998886 56667778999999999999999999999988875 455667
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
+.++...|++++|.+.+++.++..|+++.++..++.++...++.+.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999988888888877777653
No 176
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.54 E-value=9.5e-08 Score=91.63 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=48.9
Q ss_pred hHhhCcchhhhHHHHHHHHHHhcCCC-CCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 459 YKAQGKLHRKYAYRILMDIKKKKILN-LDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 459 f~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
+-..+|+||+ +..|..+++..... ..+.++|+||+||||+.|.||+.+|.. ..++.+||||
T Consensus 17 i~visDiHg~--~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNH 78 (218)
T PRK09968 17 IWVVGDIHGE--YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNH 78 (218)
T ss_pred EEEEEeccCC--HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECch
Confidence 4567999999 45588888776533 456788999999999999999998853 2578999999
No 177
>KOG3060|consensus
Probab=98.53 E-value=1.3e-06 Score=82.43 Aligned_cols=122 Identities=17% Similarity=0.097 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
.-|.+.+....+|..+-..|+|++|+++|+..++-||+ ...+-..-.+...+|+--+|++....-++..+.+.+||..+
T Consensus 81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33555666677899999999999999999999999995 55666666666778999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKR 151 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~ 151 (546)
+.+|...|+|++|.-||++.+-++|-++.....+++++.-++-
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988888887766554
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=5.5e-07 Score=92.24 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
...|+++..+-..+..+.+.++.++|++.+++++.++|+ .....++|.++++.|++++|+..+++.+..+|+++..|..
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 466777888888999999999999999999999999997 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
+|.+|..+|+-.+|...+.+...+.-+-..+.
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999988887765544443
No 179
>KOG1308|consensus
Probab=98.52 E-value=3.9e-08 Score=96.23 Aligned_cols=109 Identities=33% Similarity=0.465 Sum_probs=101.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a 104 (546)
+++++..+.+...+.++..++..|.++.||+.|+.||+++|. +..|..+|.+++++++...|+.+|..|++++|+....
T Consensus 105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ 184 (377)
T KOG1308|consen 105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG 184 (377)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc
Confidence 345677778888888999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
|-.+|.+...+|++++|..++..+++++-+
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998754
No 180
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.51 E-value=3.4e-06 Score=76.69 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=46.3
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
++.+++|+|+....+..+++........+.++++||++ +.+++..+..+. ..++.++||||..
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 37889999999977766665554333467899999998 356776665442 2489999999973
No 181
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=7.6e-07 Score=86.60 Aligned_cols=177 Identities=14% Similarity=0.070 Sum_probs=131.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy11688 27 VSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT------AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100 (546)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~ 100 (546)
+...+|+..++...+|+.+-+.|..+.||+.-+. +...|+ ..+...+|.-|+..|=++.|...|...++...-
T Consensus 61 ~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~-L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef 139 (389)
T COG2956 61 MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF 139 (389)
T ss_pred HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh
Confidence 3567888888899999999999999999998544 445663 678889999999999999999999888776555
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcc
Q psy11688 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSL 180 (546)
Q Consensus 101 ~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~ 180 (546)
-..|...+-.+|....++++|+..-++..++.|+...+....-.|...... ...++..++..-..+++..+|+.
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~------~~~~~~d~A~~~l~kAlqa~~~c 213 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA------LASSDVDRARELLKKALQADKKC 213 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHhhCccc
Confidence 567888889999999999999999999988888765543222223222211 23344455666777888889998
Q ss_pred cccccccccccccccccchhHhhHHHHHHH
Q psy11688 181 VHITVEDEAKFTVCGDIHGQFYDLMNIFEL 210 (546)
Q Consensus 181 ~~i~~~~~~~~~viGDihg~~~~l~~il~~ 210 (546)
++.+.-.+......||..++.+.+.+++++
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 888766666566667777777777777765
No 182
>KOG1174|consensus
Probab=98.48 E-value=4.5e-07 Score=90.65 Aligned_cols=202 Identities=13% Similarity=0.053 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
.+..|+..|..++..++|..|+.+-+++|+.+|+ ..+|...|.++..+++.++|+..|+.|..+.|..-+.|..+-.+|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3556777888888888888888888888888885 788888888888888888888888888888888888888888888
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccc-cchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccccccc
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFT-ECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKF 191 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~-~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~ 191 (546)
...|++.||...-+.++..-|+++.++..++ .+..--- ..++.++++ +.+.+..+|..+......+...
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-------~~rEKAKkf---~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-------RMREKAKKF---AEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-------hhHHHHHHH---HHhhhccCCccHHHHHHHHHHH
Confidence 8888888888888888888888888777765 3332111 112233333 3345666776554432211112
Q ss_pred ccccccchhHhhHHHHHHHh--CCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCe
Q psy11688 192 TVCGDIHGQFYDLMNIFELN--GLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNH 250 (546)
Q Consensus 192 ~viGDihg~~~~l~~il~~~--~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~ 250 (546)
.+ .|...|...+++.. .++ +...-..|||+.---....+.+..........|++
T Consensus 449 ~~----Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 449 QV----EGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hh----hCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 22 24455555555543 222 33345568887665555666666544433344443
No 183
>KOG2076|consensus
Probab=98.48 E-value=2.1e-06 Score=93.49 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
-.+|..+.+|+.+|.+|-++|+.++|...+..|-.++| +...|..+|....++|.+++|.-+|.+||+++|.+.+..++
T Consensus 167 kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 167 KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45777888999999999999999999999999999999 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
++..|.++|+...|...|.++++++|
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999
No 184
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=9.6e-07 Score=75.44 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC---cchhcc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND---KDAKAK 141 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~~ 141 (546)
...++.+|..+.+.|++++|+..++++++.+|++ ..+++.+|.++...|++++|++.|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999987 5789999999999999999999999999999986 456777
Q ss_pred cccchhhhhhh
Q psy11688 142 FTECNKIVKRM 152 (546)
Q Consensus 142 l~~~~~~l~~~ 152 (546)
++.++...++.
T Consensus 82 ~~~~~~~~~~~ 92 (119)
T TIGR02795 82 LGMSLQELGDK 92 (119)
T ss_pred HHHHHHHhCCh
Confidence 77777655544
No 185
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.47 E-value=1.7e-06 Score=78.19 Aligned_cols=150 Identities=21% Similarity=0.317 Sum_probs=89.8
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGF 269 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~ 269 (546)
++.++||+|+....+.++++... +.+.++++||++++ .++++.+..+ .++.++||||..........
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~~ 68 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNENDE 68 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEECT
T ss_pred EEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhhc
Confidence 47899999999999999999872 35679999999993 6777666554 59999999996553222111
Q ss_pred hhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCC
Q psy11688 270 EGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGR 349 (546)
Q Consensus 270 ~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~ 349 (546)
. + +..... ....+.+++++||.+ ..
T Consensus 69 ~------~----------~~~~~~-~~~~~~~i~~~H~~~-~~------------------------------------- 93 (156)
T PF12850_consen 69 E------Y----------LLDALR-LTIDGFKILLSHGHP-YD------------------------------------- 93 (156)
T ss_dssp C------S----------SHSEEE-EEETTEEEEEESSTS-SS-------------------------------------
T ss_pred c------c----------ccccee-eeecCCeEEEECCCC-cc-------------------------------------
Confidence 0 0 111111 112255899999987 21
Q ss_pred CCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEe
Q psy11688 350 APSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITM 418 (546)
Q Consensus 350 ~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~ 418 (546)
...+.+.+.+.+...+.++++-||.-...-.+ ..+..+++.=|..... .+...+++++
T Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-~~~~~~~~~Gs~~~~~--~~~~~~~~i~ 151 (156)
T PF12850_consen 94 --------VQWDPAELREILSRENVDLVLHGHTHRPQVFK-IGGIHVINPGSIGGPR--HGDQSGYAIL 151 (156)
T ss_dssp --------STTTHHHHHHHHHHTTSSEEEESSSSSEEEEE-ETTEEEEEE-GSSS-S--SSSSEEEEEE
T ss_pred --------cccChhhhhhhhcccCCCEEEcCCcccceEEE-ECCEEEEECCcCCCCC--CCCCCEEEEE
Confidence 00344567778889999999999987533222 2333444444433221 2235666666
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=3.9e-06 Score=90.45 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CC
Q psy11688 34 RAEKLKAEANEHFKNQA---YNKAIELYSAAIEVNPT-AIYYANRSFAYLKT--------EAIGYALNDASKAIEL--DQ 99 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~--------g~~~~Al~~~~~al~l--~p 99 (546)
.+..++.+|..++.+++ .+.|+.+|++|++++|+ +.+|..+|.+|... .+..+|.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45667888988877655 88999999999999997 88888888888664 2345667777777764 78
Q ss_pred CcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCc
Q psy11688 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDS 179 (546)
Q Consensus 100 ~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~ 179 (546)
..+.+|.-+|..+...|++++|.+.+++|++++| +..++..++.++...++.+ ++++.+.+++...|.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~-----------eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR-----------LAADAYSTAFNLRPG 485 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCC
Confidence 8889999999999999999999999999999999 5778888888888777663 445556666666665
Q ss_pred ccccccccccccccccccchhHhhHHHHHH
Q psy11688 180 LVHITVEDEAKFTVCGDIHGQFYDLMNIFE 209 (546)
Q Consensus 180 ~~~i~~~~~~~~~viGDihg~~~~l~~il~ 209 (546)
..... ++--+-.|.+++.+.-.+.
T Consensus 486 ~pt~~------~~~~~~f~~~~~~~~~~~~ 509 (517)
T PRK10153 486 ENTLY------WIENLVFQTSVETVVPYLY 509 (517)
T ss_pred CchHH------HHHhccccccHHHHHHHHH
Confidence 44322 2223334555555544443
No 187
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.45 E-value=1.1e-06 Score=79.30 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--
Q psy11688 51 YNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEA----------IGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK-- 117 (546)
Q Consensus 51 ~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~----------~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~-- 117 (546)
|+.|.+.++.+...|| ++.++++=|.+++.+.+ +++|+.-|+.||.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999 48888888888877643 4678999999999999999999999999998765
Q ss_pred ---------hHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 118 ---------FKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 118 ---------~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
|++|..+|++|...+|+|...+..+..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7889999999999999988776554444
No 188
>KOG4162|consensus
Probab=98.43 E-value=4.2e-06 Score=89.77 Aligned_cols=138 Identities=17% Similarity=0.083 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYM 113 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 113 (546)
-.-|...|..+.+.+.-++|..+..+|-.++|. +..|+.+|.++...|+.++|.+.|..|+.+||+.+.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455677788888889999999999999999995 8999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHH--HHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcc
Q psy11688 114 SLGKFKLALR--DYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSL 180 (546)
Q Consensus 114 ~~g~~~eA~~--~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~ 180 (546)
+.|+..-|.. .+..|++++|.+.++|+.++.+.+..++. ..+...++.+.+.-...|-.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~--------~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS--------KQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch--------HHHHHHHHHHHhhccCCCcc
Confidence 9999888888 99999999999999999999999988877 35556666665555555543
No 189
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=2.6e-06 Score=89.54 Aligned_cols=206 Identities=12% Similarity=0.001 Sum_probs=136.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q psy11688 38 LKAEANEHFKNQAYNKAIELYSAAIEVNPTAI--YYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSL 115 (546)
Q Consensus 38 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~--a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~ 115 (546)
+...+....+.|+++.|..++.+|.+.+|+.. .....+..+...|++++|++.++++++.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44456666999999999999999999999743 3335589999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhccCCCCcchhcccc-cch-----hhhhh-----h----hh----------------hhhchHHHHH
Q psy11688 116 GKFKLALRDYEAVHKARPNDKDAKAKFT-ECN-----KIVKR-----M----QI----------------KGKLHRKYAY 164 (546)
Q Consensus 116 g~~~eA~~~~~kal~l~P~~~~~~~~l~-~~~-----~~l~~-----~----~~----------------~~~l~~~~~~ 164 (546)
|++++|++.+.+..+..+.++.....+. ..+ ..... . +. ......++..
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 9999999888888877665444222110 110 00000 0 00 0011111222
Q ss_pred HHHHHHHhhhhcCCcc--cccccccccccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhh
Q psy11688 165 RILMDIKALFMTQDSL--VHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFG 242 (546)
Q Consensus 165 ~il~~a~eiL~~~p~~--~~i~~~~~~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~ 242 (546)
.+.....+.+...++. ..+.. ....+|...++..+.+.+++. |.+.+..+.+|.+.-+..+-.++...+..
T Consensus 281 ~A~~~L~~~l~~~~~~~l~~l~~-----~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 281 TAQQIILDGLKRQYDERLVLLIP-----RLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-----hccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333334444443332 11111 122377777777777777764 33344577889888887777777777776
Q ss_pred hhhcCCCe
Q psy11688 243 FKLLYPNH 250 (546)
Q Consensus 243 l~~~~p~~ 250 (546)
.....|+.
T Consensus 354 al~~~P~~ 361 (398)
T PRK10747 354 ALKQRPDA 361 (398)
T ss_pred HHhcCCCH
Confidence 66555543
No 190
>PRK11906 transcriptional regulator; Provisional
Probab=98.42 E-value=2.4e-06 Score=88.12 Aligned_cols=108 Identities=16% Similarity=0.028 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy11688 29 VEDKERAEKLKAEANEHFKN---------QAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELD 98 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~---------g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~ 98 (546)
+-+|+.+.++.-++.+++.. .+-.+|.+.-++|++++| |+.+...+|.+....++++.|+..+++|+.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 55677778887777777644 345678999999999999 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCc
Q psy11688 99 QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136 (546)
Q Consensus 99 p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 136 (546)
|+.+.+|+..|.+....|+.++|++..++|++++|.-.
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999999999999999999633
No 191
>PRK11906 transcriptional regulator; Provisional
Probab=98.41 E-value=3.1e-06 Score=87.23 Aligned_cols=132 Identities=8% Similarity=-0.026 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHH---HhCCC-HHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q psy11688 37 KLKAEANEHFKNQ---AYNKAIELYSAAI---EVNPT-AIYYANRSFAYLKT---------EAIGYALNDASKAIELDQT 100 (546)
Q Consensus 37 ~~~~~g~~~~~~g---~~~~Ai~~~~~al---~~~p~-~~a~~nla~~~~~~---------g~~~~Al~~~~~al~l~p~ 100 (546)
.++.+|...+.++ ..+.|+.+|.+|+ +++|+ +.+|..+|.|++.. ..-.+|.+..++|+++||.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4477777776655 4567999999999 99996 89999999999775 2345788999999999999
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCc
Q psy11688 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDS 179 (546)
Q Consensus 101 ~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~ 179 (546)
++.++..+|.++...++++.|...|++|+.++|+.+.+++..+.+....++.+ ...+...+.++.+|.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~-----------~a~~~i~~alrLsP~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE-----------EARICIDKSLQLEPR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999988776666553 344445555655654
No 192
>KOG1840|consensus
Probab=98.41 E-value=2.2e-06 Score=90.99 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP--------T-AIYYANRSFAYLKTEAIGYALNDASKAIELD- 98 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~- 98 (546)
.++|.-+..+.++|..|.+.|+|++|..++++|+++.- . +..+.+++.++..++++++|...+++++++-
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999998632 2 6889999999999999999999999999763
Q ss_pred ----C---CcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC--------cchhcccccchhhhhhhhhhhhchHHHH
Q psy11688 99 ----Q---TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND--------KDAKAKFTECNKIVKRMQIKGKLHRKYA 163 (546)
Q Consensus 99 ----p---~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~--------~~~~~~l~~~~~~l~~~~~~~~l~~~~~ 163 (546)
+ .-+..+.++|.+|..+|+|++|.+.|++|++...+. .....+++..+...+++ ..+
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~--------~~a 428 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY--------EEA 428 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc--------chH
Confidence 2 335679999999999999999999999999875321 22344444444433333 344
Q ss_pred HHHHHHHHhhh
Q psy11688 164 YRILMDIKALF 174 (546)
Q Consensus 164 ~~il~~a~eiL 174 (546)
-.++.++..++
T Consensus 429 ~~l~~~~~~i~ 439 (508)
T KOG1840|consen 429 EQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHH
Confidence 55556666665
No 193
>KOG1156|consensus
Probab=98.41 E-value=1.2e-06 Score=92.30 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
+-.++|.++.-.+..++|...+...++.+.-.|. .+.....|..+..+|+-++|....+.+++.|+...-.|.-+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 4467889999999999999999999999999995 788889999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
...++|++|++||..|+.++|+|.+++..++-++..++.++
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999988888777765
No 194
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=1.9e-06 Score=88.97 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----H
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT----K 103 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~----~ 103 (546)
...|.....+...|..+...|++++|+..++++++++|+ ..++..+|.++...|++++|++.++++++..|..+ .
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 455666777788899999999999999999999999995 78899999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
.|..+|.++..+|++++|+..|++++...|.
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 4678999999999999999999999877663
No 195
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=1.8e-06 Score=89.21 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCcHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAI----ELDQTYTKAYYRR 108 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al----~l~p~~~~a~~~l 108 (546)
..+....+|..++..|++++|+..++++++.+|+ ..++.. +..+..++++..+...+.+++ ..+|....++..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 4556778899999999999999999999999995 445443 444444444443333333333 4455556666666
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
|.++..+|++++|.+.++++++++|++..++..++.++...++.
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 77777777777777777777777777766666666666555544
No 196
>KOG0543|consensus
Probab=98.40 E-value=2.9e-06 Score=85.42 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
..+.+++.++.+.+.|..|+...+++|+++| |..++|.+|.+++.+++|+.|+.+|++|++++|+|-.+...+..|..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999 599999999999999999999999999999999999999999999988
Q ss_pred hcChHHH-HHHHHHhhccCCC
Q psy11688 115 LGKFKLA-LRDYEAVHKARPN 134 (546)
Q Consensus 115 ~g~~~eA-~~~~~kal~l~P~ 134 (546)
..++.+. .+.|.+++..-+.
T Consensus 338 ~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 7777654 8889888876554
No 197
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.39 E-value=1.6e-06 Score=98.03 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSL 115 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~ 115 (546)
.+...|..+...|+|++|++.|+++++.+|+ +.++..++.++...++.++|++.+++++..+|++... ..++.++..+
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 3333455555666666666666666666663 5555555666666666666666666666666654443 3344444445
Q ss_pred cChHHHHHHHHHhhccCCCCcchhccccc
Q psy11688 116 GKFKLALRDYEAVHKARPNDKDAKAKFTE 144 (546)
Q Consensus 116 g~~~eA~~~~~kal~l~P~~~~~~~~l~~ 144 (546)
+++.+|++.|+++++.+|++.++...+..
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55555666666666666666655544443
No 198
>KOG3060|consensus
Probab=98.39 E-value=5.8e-06 Score=78.09 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=110.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.+++|.+.-.+..+-.....+|+-.+||+...+-++.-+ |.++|..++..|+..|+|++|.=+++..+-+.|-++-.+.
T Consensus 113 L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 113 LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 467787777788888888889999999999999999999 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---hHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 107 RRAAAYMSLGK---FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 107 ~lg~~~~~~g~---~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
++|.+++-+|. +.-|.++|.++++++|.+..+++.+-.|...+...
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 99999998765 56699999999999999888888877766655543
No 199
>KOG1128|consensus
Probab=98.37 E-value=4.1e-06 Score=89.43 Aligned_cols=167 Identities=15% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH----------------------------HHHHccCH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSF----------------------------AYLKTEAI 84 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~----------------------------~~~~~g~~ 84 (546)
++.+.|-....+|...|+-.+|.....+-++-+|++..|..+|. .....++|
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF 501 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence 34445555666677777777776666666664444444444333 23456899
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHH
Q psy11688 85 GYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAY 164 (546)
Q Consensus 85 ~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~ 164 (546)
++|..+++.+++++|-....||.+|.|..++++++.|.++|.+++.++|++.++|.+++..+...++. ..+.
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k--------~ra~ 573 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK--------KRAF 573 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh--------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999777654 3344
Q ss_pred HHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHH
Q psy11688 165 RILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFEL 210 (546)
Q Consensus 165 ~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~ 210 (546)
..+.++.+.=...+.+.+ +..-..+-+|....++....+++..
T Consensus 574 ~~l~EAlKcn~~~w~iWE---Nymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWE---NYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCCCCeeee---chhhhhhhcccHHHHHHHHHHHHHh
Confidence 444444443333333222 2111123355555666666665553
No 200
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.37 E-value=5.2e-07 Score=85.95 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=47.8
Q ss_pred hhCcchhhhHHHHHHHHHHhcCCC-CCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKILN-LDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
..+|+||++ ..|..+++..... ....++|+||+||||+++.||+.+|.. ..++++||||
T Consensus 5 ~isDiHg~~--~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNh 64 (207)
T cd07424 5 VVGDIHGHY--SLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNH 64 (207)
T ss_pred EEECCCCCH--HHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCC
Confidence 458999995 4577777765543 467799999999999999999998865 2588999999
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=8.6e-07 Score=70.16 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVN---P----T-AIYYANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---p----~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
|+-+..+.+.|..+...|+|++|+.+|++|+++. + . +.++.++|.++..+|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555431 1 1 344444555555555555555554444443
No 202
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.35 E-value=3.4e-06 Score=90.92 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKN--------QAYNKAIELYSAAIEV--NP-TAIYYANRSFAYLKTEAIGYALNDASKAIE 96 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~--------g~~~~Ai~~~~~al~~--~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~ 96 (546)
.+.+|+.+.++..++.++... .+...|.....+++.+ +| ++.+|..+|..+...|++++|.+.+++|++
T Consensus 369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 366777777887777766543 2345666667776664 44 478899999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 97 LDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 97 l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
++| +..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus 449 L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 449 LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999 57899999999999999999999999999999998753
No 203
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=1.6e-05 Score=71.09 Aligned_cols=121 Identities=16% Similarity=0.057 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TK 103 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~ 103 (546)
....+...+......+..++...+...+++.+.-.|+ ..+...+|.+++..|++++|+..+++++...|+. +.
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 4455677788888888999999999999999999995 5789999999999999999999999999988765 45
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
+.+++|.++...|++++|+..++.. .-.+-.+.+...++.++...++.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 7899999999999999999999763 33344555667777777776665
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=4.1e-06 Score=66.21 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---CcHHHHHHHHHHHHHhcChHHHHHHHHHhhcc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELD----Q---TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~----p---~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l 131 (546)
+.++.++|.+|..+|+|++|+.++++++++. + .-..++.++|.++..+|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999762 2 23567999999999999999999999999976
No 205
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.34 E-value=6e-06 Score=78.83 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT---KAYY 106 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~---~a~~ 106 (546)
.+..|++.|...++.|+|++|++.|++.....|. ..+...++.++++.++|++|+..+++-+++.|+++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3788999999999999999999999999999993 78999999999999999999999999999999765 4688
Q ss_pred HHHHHHHHhcC--------hHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh-----h-hhchHHHHHHHHHHHHh
Q psy11688 107 RRAAAYMSLGK--------FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI-----K-GKLHRKYAYRILMDIKA 172 (546)
Q Consensus 107 ~lg~~~~~~g~--------~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~-----~-~~l~~~~~~~il~~a~e 172 (546)
.+|.++...=+ -.+|...+++.++.-|++.-+-.....+.....++.. + -.+.++....+..++.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 88999876432 3678899999999999976654433333322222211 1 12344455667777888
Q ss_pred hhhcCCccc
Q psy11688 173 LFMTQDSLV 181 (546)
Q Consensus 173 iL~~~p~~~ 181 (546)
+++..|+-.
T Consensus 193 v~e~y~~t~ 201 (254)
T COG4105 193 VLENYPDTS 201 (254)
T ss_pred HHhcccccc
Confidence 887766533
No 206
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.33 E-value=3.5e-06 Score=74.47 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=78.4
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChH--HHHHHHhhhhhcCCCeEEEEccccccchhhhhhc
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSV--ECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYG 268 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~--e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~ 268 (546)
+.+++|+|+... .+ . ..+.+.++++||+++++.... +++.++..+. . ..+++++||||....
T Consensus 2 i~~isD~H~~~~----~~---~-~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~~~----- 65 (135)
T cd07379 2 FVCISDTHSRHR----TI---S-IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLTLD----- 65 (135)
T ss_pred EEEEeCCCCCCC----cC---c-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCcCC-----
Confidence 678999999987 11 1 234577999999999886432 3444444432 1 236789999996421
Q ss_pred chhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCC
Q psy11688 269 FEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNG 348 (546)
Q Consensus 269 ~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~ 348 (546)
.-+.+++++||.+ .+... ..+.
T Consensus 66 ----------------------------~~~~~ilv~H~~p-~~~~~----------------------~~~~------- 87 (135)
T cd07379 66 ----------------------------PEDTDILVTHGPP-YGHLD----------------------LVSS------- 87 (135)
T ss_pred ----------------------------CCCCEEEEECCCC-CcCcc----------------------cccc-------
Confidence 1245799999976 21000 0000
Q ss_pred CCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCce
Q psy11688 349 RAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYE 389 (546)
Q Consensus 349 ~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~ 389 (546)
....|.+.+.+++++.+.++++-||.-.+.|++
T Consensus 88 --------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 88 --------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred --------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 123567889999999999999999999888876
No 207
>KOG1156|consensus
Probab=98.32 E-value=7.3e-07 Score=93.80 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=116.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
....|+..+.+..+|..+...|+-++|......+++.|+. ...|..+|..+...++|++|+.+|+.|++++|+|...|.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4567888889999999999999999999999999999995 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
-++....++++++.....-.+.+++.|..-..|...+..+...+.+.
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888887777666653
No 208
>PRK09453 phosphodiesterase; Provisional
Probab=98.31 E-value=1.6e-06 Score=80.87 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=51.8
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCC--------hHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSF--------SVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~--------~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
++.+++|+||+...+.++++..... +.+.++++||++++|+. +.+++..+..+. ..+++++||||..
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~~ 76 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDSE 76 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcch
Confidence 3788999999999888888876332 45679999999998873 456666555432 3699999999975
Q ss_pred h
Q psy11688 262 Y 262 (546)
Q Consensus 262 ~ 262 (546)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 4
No 209
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=5.8e-06 Score=85.49 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=67.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy11688 48 NQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127 (546)
Q Consensus 48 ~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~k 127 (546)
.++++.|+..+++..+.+|+. ...+|.+++..++..+|++.+.++++.+|.+...+...|..+...++++.|++..++
T Consensus 182 t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456666666666666666542 233566666666666666666666666666666666666666666666666666666
Q ss_pred hhccCCCCcchhcccccchhhhhhhhh
Q psy11688 128 VHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 128 al~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
|.++.|++...|..++.++...++++.
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ 286 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFEN 286 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHH
Confidence 666666666666666666666666554
No 210
>KOG1129|consensus
Probab=98.29 E-value=2.1e-06 Score=83.57 Aligned_cols=209 Identities=10% Similarity=0.017 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
....++.+..++..|.+..+...|+..|.+.++.-| +.......|.++..++++++|++.|+.+++++|.|.++.--.|
T Consensus 252 q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 252 QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIA 331 (478)
T ss_pred cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeee
Confidence 334567778889999999999999999999999999 5788889999999999999999999999999999999988888
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccccccccc
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEA 189 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~ 189 (546)
.-|+.-++.+-|+.+|++.+++.-.+++...+++-|....++++ .+...++++..........-.+.-+.+.
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D--------~~L~sf~RAlstat~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID--------LVLPSFQRALSTATQPGQAADVWYNLGF 403 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh--------hhHHHHHHHHhhccCcchhhhhhhccce
Confidence 89999999999999999999999999999999999888887774 3333444444444333322223333344
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCC
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN 249 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~ 249 (546)
..+-+||..-+-..+.-++.. .+.....+.-||-+-.|..+-.++-.++.+.+...|.
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred eEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 456678877766666555543 3334446777888888888888888888888877775
No 211
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=9.4e-07 Score=71.11 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=63.9
Q ss_pred ccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 81 TEAIGYALNDASKAIELDQT--YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 81 ~g~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
.|+|++|+..++++++.+|. +...++.+|.||.++|+|++|+..+++ .+.+|.+......++.|+..+++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 68999999999999999995 567788899999999999999999999 8899988888888899999888873
No 212
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.26 E-value=7.7e-06 Score=86.39 Aligned_cols=122 Identities=12% Similarity=-0.024 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--HHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIY---YANRSFAYLKTEAIGYALNDASKAIELDQTYT--KAY 105 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a---~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~--~a~ 105 (546)
.++++......|..+...|++++|++.++++++..|+... ..-+....+..++.+++++.++++++.+|+++ ...
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 3356788888999999999999999999999999996331 23344444556889999999999999999999 888
Q ss_pred HHHHHHHHHhcChHHHHHHHH--HhhccCCCCcchhcccccchhhhhhhh
Q psy11688 106 YRRAAAYMSLGKFKLALRDYE--AVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~--kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
..+|.++.+.|++++|.++|+ ++++.+|++.... .++.++...++.+
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~ 387 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKA 387 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHH
Confidence 899999999999999999999 6888899876644 8888887777663
No 213
>KOG1174|consensus
Probab=98.25 E-value=4.5e-06 Score=83.65 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-H----------------------------------HHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-A----------------------------------IYYAN 73 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~----------------------------------~a~~n 73 (546)
..-|.+..-+-..|.+++..|++++|+..|+++..+||. . .-|+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 344566777888999999999999999999999999982 0 11222
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 74 RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 74 la~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
-+...+..++++.|+.+.+|+|+.+|.+..++...|.++..+++.++|+-.|+.|..+.|..-+.+..+-.++...++.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 34445677899999999999999999999999999999999999999999999999999999988888888887776663
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-05 Score=78.12 Aligned_cols=104 Identities=14% Similarity=0.012 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC---hHHHHHHH
Q psy11688 50 AYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK---FKLALRDY 125 (546)
Q Consensus 50 ~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~---~~eA~~~~ 125 (546)
..++.+.-.+.-++.|| |..-|..+|.+|+.+|+++.|+..|.+|+++.|+|++.+..+|.++....+ -.+|...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35667777888899999 589999999999999999999999999999999999999999999987654 57899999
Q ss_pred HHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 126 EAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 126 ~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
++++++||.+..+++.++......++++
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~ 244 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYA 244 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence 9999999999999999998887766663
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=98.23 E-value=9.1e-06 Score=72.68 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
-...+..|.-++..|++++|...|+-....||.+++.|..+|.|+..+++|++|+..|..|..++++++...+..+.|+.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh
Q psy11688 148 IVKRMQ 153 (546)
Q Consensus 148 ~l~~~~ 153 (546)
.+++..
T Consensus 117 ~l~~~~ 122 (165)
T PRK15331 117 LMRKAA 122 (165)
T ss_pred HhCCHH
Confidence 988774
No 216
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.21 E-value=8.5e-06 Score=78.26 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=70.3
Q ss_pred ccccccccchhHhhHH-HHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhh---
Q psy11688 190 KFTVCGDIHGQFYDLM-NIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQ--- 265 (546)
Q Consensus 190 ~~~viGDihg~~~~l~-~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~--- 265 (546)
+++++||+|+++.... +.++.. +.|.+++.||+++. +.+++..+.++ |..+++++||||.+....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~----~pD~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~ 70 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLL----QPDLVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYDATFRK 70 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhcc----CCCEEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCcccccccccc
Confidence 3788999999887632 333332 34679999999864 46666666554 235899999999865320
Q ss_pred -h----------------hc-------------------------chhhhhhhc-hHHHHHHHHHhhccccceeeecceE
Q psy11688 266 -I----------------YG-------------------------FEGEVKSKY-TDLMAQFFTEVYNWLPLCHCINNKV 302 (546)
Q Consensus 266 -~----------------~~-------------------------~~~e~~~~~-~~~~~~~~~~~~~~lP~~~~~~~~~ 302 (546)
. ++ ...+++..| -...++++...++.++.+......|
T Consensus 71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V 150 (238)
T cd07397 71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI 150 (238)
T ss_pred hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence 0 00 011334444 2345667778888886444445589
Q ss_pred EEEeCCc
Q psy11688 303 LVMHGGL 309 (546)
Q Consensus 303 ~~vHgGi 309 (546)
++.|+++
T Consensus 151 liaH~~~ 157 (238)
T cd07397 151 LLAHNGP 157 (238)
T ss_pred EEeCcCC
Confidence 9999998
No 217
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=3.2e-05 Score=87.03 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CH-------------------HHHHHHHHHHHHccCHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TA-------------------IYYANRSFAYLKTEAIGYA 87 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~-------------------~a~~nla~~~~~~g~~~~A 87 (546)
.+.+|+....++..|..+++.+++++|... .++..-+ +. .|++.+|.||-++|++++|
T Consensus 58 l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 58 LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHH
Confidence 466777888888899988888888877766 5555544 23 7999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccC
Q psy11688 88 LNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 88 l~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
.+.+++++++||+|+.+..++|..|... +.++|++++.+|++..
T Consensus 136 ~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 136 KGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999998763
No 218
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.10 E-value=9.2e-05 Score=68.61 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=72.3
Q ss_pred cccccccc-hhHh-----hHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhh
Q psy11688 191 FTVCGDIH-GQFY-----DLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMN 264 (546)
Q Consensus 191 ~~viGDih-g~~~-----~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~ 264 (546)
+.+++|.| +... .+.++++. ...+.++.+||+++ .+++..+..+. ..++.++||||...
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~~-- 66 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDENL-- 66 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCccc--
Confidence 67899999 5433 34555543 24567999999987 66776665542 25899999999631
Q ss_pred hhhcchhhhhhhchHHHHHHHHHhhccccceeee---cceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcC
Q psy11688 265 QIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCI---NNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWS 341 (546)
Q Consensus 265 ~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWs 341 (546)
.+|....+ +.+++++||....+ |.
T Consensus 67 --------------------------~lp~~~~~~~~g~~i~l~HG~~~~~---------------------------~~ 93 (178)
T cd07394 67 --------------------------NYPETKVITVGQFKIGLIHGHQVVP---------------------------WG 93 (178)
T ss_pred --------------------------cCCCcEEEEECCEEEEEEECCcCCC---------------------------CC
Confidence 34554433 45899999864100 00
Q ss_pred CCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccc
Q psy11688 342 DPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQ 385 (546)
Q Consensus 342 dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~ 385 (546)
+.+.+.++.+..+.+++|-||+-++
T Consensus 94 -------------------~~~~~~~~~~~~~~dvii~GHTH~p 118 (178)
T cd07394 94 -------------------DPDSLAALQRQLDVDILISGHTHKF 118 (178)
T ss_pred -------------------CHHHHHHHHHhcCCCEEEECCCCcc
Confidence 2334666677889999999999875
No 219
>KOG0495|consensus
Probab=98.09 E-value=3.4e-05 Score=81.45 Aligned_cols=124 Identities=14% Similarity=0.105 Sum_probs=107.8
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
+-+|.+-+.|+..-...+...+++.|...+.+|-...|....|+.-+.....++..++|++.++.+++..|++.+.|..+
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml 691 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML 691 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34455556666666677788888888888888888888888888888888899999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
|+++..+++.+.|...|..-++..|.....|..++.+.+..+..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999988888766543
No 220
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=6.1e-05 Score=78.03 Aligned_cols=96 Identities=25% Similarity=0.262 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
+.....+..+...++..+|++...++++.+| ++..+...|..+++.++++.|++.+++|+++.|+..++|+.||.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 4556678888889999999999999999999 589999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHhhcc
Q psy11688 115 LGKFKLALRDYEAVHKA 131 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l 131 (546)
+|++++|+..++.+--.
T Consensus 281 ~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 281 LGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHhcCcCC
Confidence 99999999888754433
No 221
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.08 E-value=7.4e-05 Score=71.55 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=55.6
Q ss_pred cccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 189 AKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 189 ~~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
.++.+++|+||++..+.++++..... ..+.++.+||++++|+...++..++..+... +..+++++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~-~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPET-GADAIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 35889999999999999999865322 4567999999999997776776666666432 24689999999975
No 222
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.08 E-value=2.2e-05 Score=77.30 Aligned_cols=85 Identities=18% Similarity=0.019 Sum_probs=72.9
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC---cchhc
Q psy11688 68 AIYYANRSFAY-LKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND---KDAKA 140 (546)
Q Consensus 68 ~~a~~nla~~~-~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~ 140 (546)
...++..|..+ ++.|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 47788899887 66799999999999999999998 5799999999999999999999999999988875 55666
Q ss_pred ccccchhhhhhh
Q psy11688 141 KFTECNKIVKRM 152 (546)
Q Consensus 141 ~l~~~~~~l~~~ 152 (546)
.++.++...++.
T Consensus 222 klg~~~~~~g~~ 233 (263)
T PRK10803 222 KVGVIMQDKGDT 233 (263)
T ss_pred HHHHHHHHcCCH
Confidence 677777655444
No 223
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.03 E-value=4.1e-05 Score=65.79 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC---Ccchhccc
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN---DKDAKAKF 142 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~---~~~~~~~l 142 (546)
.+.+++|.++-.+|+.++|+..|+++++..... ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 478999999999999999999999999986443 678999999999999999999999999999888 66666666
Q ss_pred ccchhhhhhhh
Q psy11688 143 TECNKIVKRMQ 153 (546)
Q Consensus 143 ~~~~~~l~~~~ 153 (546)
+.+....++.+
T Consensus 82 Al~L~~~gr~~ 92 (120)
T PF12688_consen 82 ALALYNLGRPK 92 (120)
T ss_pred HHHHHHCCCHH
Confidence 66666666554
No 224
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.01 E-value=3.1e-05 Score=75.55 Aligned_cols=209 Identities=14% Similarity=0.259 Sum_probs=105.4
Q ss_pred cccccccchhH------hhHHHHHHHhCCCCCCCCeeeecccccc-------CCChHHHHHHHhhhhhcCCCeEEEEccc
Q psy11688 191 FTVCGDIHGQF------YDLMNIFELNGLPSPDNPYLFNGDFVDR-------GSFSVECIFTLFGFKLLYPNHFFMARGN 257 (546)
Q Consensus 191 ~~viGDihg~~------~~l~~il~~~~~~~~~~~~~~lGD~vdr-------G~~~~e~l~~l~~l~~~~p~~v~~lrGN 257 (546)
+.+++|+|... +.+.+.++.. ....+.++++||++|. .+...+++..+..+... +-.+++++||
T Consensus 3 i~~iSDlHl~~~~~~~~~~~~~~l~~~--~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~GN 79 (241)
T PRK05340 3 TLFISDLHLSPERPAITAAFLRFLRGE--ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHGN 79 (241)
T ss_pred EEEEeecCCCCCChhHHHHHHHHHHhh--hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeCC
Confidence 67899999432 2344444332 1245679999999985 22345666677666532 3469999999
Q ss_pred cccchhhhhhcchhhhhhhchHHHHHHHHHhhcccc--ceeee-cceEEEEeCCccCCCCCChhhhhccCCCC-------
Q psy11688 258 HESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLP--LCHCI-NNKVLVMHGGLFSSDNVTLEDIRTIDRNR------- 327 (546)
Q Consensus 258 HE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP--~~~~~-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~------- 327 (546)
||....... .+... +..+| ....+ +.+++++||-............+++-|..
T Consensus 80 HD~~~~~~~---------------~~~~g--~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~ 142 (241)
T PRK05340 80 RDFLLGKRF---------------AKAAG--MTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFL 142 (241)
T ss_pred CchhhhHHH---------------HHhCC--CEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHH
Confidence 997432110 00000 12233 22223 45799999988432222233333333320
Q ss_pred -CCCCch--hhhhhhcCCCCCCCCCCCCCCCC-eeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCC
Q psy11688 328 -QPPDEG--LMCELLWSDPQIPNGRAPSKRGV-GVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAP 403 (546)
Q Consensus 328 -~~~~~~--~~~dllWsdp~~~~~~~~~~rg~-~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~ 403 (546)
.|+... +...+- .+... ....+.. -.-..++.+.+.+++.+.+.+|-||.-.+.-.....++.-++-.+-+
T Consensus 143 ~~p~~~~~~ia~~~~-~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lg 217 (241)
T PRK05340 143 ALPLSIRLRIAAKMR-AKSKA----ANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLG 217 (241)
T ss_pred hCCHHHHHHHHHHHH-HHHHH----hcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeC
Confidence 000000 000000 00000 0000111 12235677888899999999999999764433333333222333333
Q ss_pred CCCCCCCCceeEEEeeCCCCceeEEEE
Q psy11688 404 NYCDSVGNKGAFITMKGKDMVPHFTTY 430 (546)
Q Consensus 404 ~y~~~~~n~~a~~~~~~~~~~~~~~~~ 430 (546)
+. ...+.++.++++. .++++|
T Consensus 218 dw----~~~~~~~~~~~~~--~~~~~~ 238 (241)
T PRK05340 218 DW----HEQGSVLKVDADG--VELIPF 238 (241)
T ss_pred CC----CCCCeEEEEECCc--eEEEeC
Confidence 33 1348888885443 455544
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=7.5e-06 Score=53.51 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=28.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHH
Q psy11688 91 ASKAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123 (546)
Q Consensus 91 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~ 123 (546)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678888888888888888888888888888863
No 226
>KOG1127|consensus
Probab=97.99 E-value=1.7e-05 Score=87.15 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
.++++....+..+....+++.|......+-+..|- ...|..+|..|.+.++..+|+.+++.|++.+|.+..+|..+|
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLG 603 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLG 603 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHH
Confidence 33334444444444444444444443333333331 234445777777888888888888899999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
.+|...|+|.-|++.|.||..++|.+....+..+.+....++++
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999988888877777776666664
No 227
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=97.99 E-value=5.9e-05 Score=65.06 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=79.9
Q ss_pred cccccchhHhhHHHHH--HHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcch
Q psy11688 193 VCGDIHGQFYDLMNIF--ELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFE 270 (546)
Q Consensus 193 viGDihg~~~~l~~il--~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 270 (546)
++||+|+......... ... .....+.++++||+++.+....+...............++++.||||
T Consensus 2 ~~gD~h~~~~~~~~~~~~~~~-~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----------- 69 (131)
T cd00838 2 VISDIHGNLEALEAVLEAALA-AAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----------- 69 (131)
T ss_pred eeecccCCccchHHHHHHHHh-cccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----------
Confidence 5899999888877654 221 22345679999999999988776654422223344567999999999
Q ss_pred hhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCC
Q psy11688 271 GEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRA 350 (546)
Q Consensus 271 ~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~ 350 (546)
++++|+++ .+...... +..
T Consensus 70 -------------------------------i~~~H~~~-~~~~~~~~---------------------~~~-------- 88 (131)
T cd00838 70 -------------------------------ILLTHGPP-YDPLDELS---------------------PDE-------- 88 (131)
T ss_pred -------------------------------EEEeccCC-CCCchhhc---------------------ccc--------
Confidence 99999998 22110000 000
Q ss_pred CCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceE
Q psy11688 351 PSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEV 390 (546)
Q Consensus 351 ~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~ 390 (546)
..........+...+...+|.||.-....+..
T Consensus 89 --------~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 89 --------DPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred --------hhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 00567788889999999999999987665543
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.6e-05 Score=55.41 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
.++..+|.+|..+|++++|++.++++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777888888888888888888888888888888777764
No 229
>KOG1310|consensus
Probab=97.96 E-value=2.8e-05 Score=80.20 Aligned_cols=110 Identities=31% Similarity=0.327 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTE---AIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g---~~~~Al~~~~~al~l~p~~~~a 104 (546)
-+-|+.++..+..|+..+..+....|+..|.++++..|+ ...|.|+|.++++.+ +--.|+.++..|+++||...+|
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 456788999999999999999999999999999999996 789999999999864 5567999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
|++++.++..++++.+|+++-..+....|.+...
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 9999999999999999999998777777855543
No 230
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.94 E-value=9.4e-05 Score=72.14 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHhcChHHHHHHHHHhhccCCCCcch---hc
Q psy11688 67 TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY---YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA---KA 140 (546)
Q Consensus 67 ~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~---~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~---~~ 140 (546)
++..++..|..++..|+|++|++.|++++...|..+.+. +.+|.+|.+++++++|+..|++.++.+|+++.+ ++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 477788899999999999999999999999999887654 899999999999999999999999999998764 45
Q ss_pred ccccchhhhhhhhh-------hhhchHHHHHHHHHHHHhhhhcCCccc
Q psy11688 141 KFTECNKIVKRMQI-------KGKLHRKYAYRILMDIKALFMTQDSLV 181 (546)
Q Consensus 141 ~l~~~~~~l~~~~~-------~~~l~~~~~~~il~~a~eiL~~~p~~~ 181 (546)
.++.+......... ....+......++....+++...|+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 55544333321100 111223445666777777777777643
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.93 E-value=0.00012 Score=69.52 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcc---hhcc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD---AKAK 141 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---~~~~ 141 (546)
+..++..|..++..|+|++|++.|++++...|.. ..+.+.+|.++...|++++|+..|++.++..|+++. +++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 7889999999999999999999999999998864 578999999999999999999999999999999776 4555
Q ss_pred cccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCccccc
Q psy11688 142 FTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHI 183 (546)
Q Consensus 142 l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i 183 (546)
++.+......-......+.....+++....+++...|+....
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 555443322111011233455667777888888888875543
No 232
>KOG4648|consensus
Probab=97.93 E-value=8.6e-06 Score=79.81 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=84.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
.-.+|..|+++|+|++|+.+|.+++.++|.|+-.+.++|.+|++++.|..|..+++.|+.++.....++...+.+...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999877777777776666555
Q ss_pred hhhhhhhchHHHHHHHHHHHHhhhhcCCccccc
Q psy11688 151 RMQIKGKLHRKYAYRILMDIKALFMTQDSLVHI 183 (546)
Q Consensus 151 ~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i 183 (546)
... ++-+.+..+|.-+|+..++
T Consensus 180 ~~~-----------EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNM-----------EAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHH-----------HHHHhHHHHHhhCcccHHH
Confidence 442 3334555566666665444
No 233
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.92 E-value=2.1e-05 Score=51.33 Aligned_cols=32 Identities=31% Similarity=0.306 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIELDQT 100 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~ 100 (546)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 234
>KOG1127|consensus
Probab=97.91 E-value=2.7e-05 Score=85.62 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
..++|..+|..+.+.++..+|+..|+.|++.+|+ ..+|..+|.+|...|+|..|++.|+||..++|.+..+-|..|.+.
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 3456777999999999999999999999999994 899999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
..+|+|++|+..+...+........+...++++....
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999987776666666666665433
No 235
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.91 E-value=4.5e-05 Score=69.83 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=45.9
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
+.+++|+|+........+.......+.+.++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 35789999988766555422122335677999999999887655443 2222 22345799999999986
No 236
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.89 E-value=7.6e-05 Score=67.50 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccC-----------HHH
Q psy11688 29 VEDKERAEKLKAEANEHFKN----------QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEA-----------IGY 86 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~----------g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~-----------~~~ 86 (546)
..+|.+++++.+=|.++... ..+++|+.-|++||.++|+ ..+++++|.+|+.++. |++
T Consensus 19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 46788889888888877644 4567899999999999997 8999999999988765 778
Q ss_pred HHHHHHHHHHhCCCcHHHH
Q psy11688 87 ALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 87 Al~~~~~al~l~p~~~~a~ 105 (546)
|..+|++|++.+|+|....
T Consensus 99 A~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 99 ATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHhcCCCcHHHH
Confidence 9999999999999986643
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.84 E-value=2.3e-05 Score=51.13 Aligned_cols=34 Identities=32% Similarity=0.662 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC
Q psy11688 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135 (546)
Q Consensus 102 ~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 135 (546)
+++|+++|.+|..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.83 E-value=0.00028 Score=61.81 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
+..++..|...++.|+|++|++.++......|-. ..+.+.+|.+|+..+++++|+..+++-++++|.++.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 7889999999999999999999999999998864 4678999999999999999999999999999998874
No 239
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.82 E-value=0.00078 Score=64.44 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=97.7
Q ss_pred cccccccchhHh--------hHHHHHHHhCCCCCCCCeeeeccccccCCChH---HHHHHHhhhhhcCCCeEEEEccccc
Q psy11688 191 FTVCGDIHGQFY--------DLMNIFELNGLPSPDNPYLFNGDFVDRGSFSV---ECIFTLFGFKLLYPNHFFMARGNHE 259 (546)
Q Consensus 191 ~~viGDihg~~~--------~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~---e~l~~l~~l~~~~p~~v~~lrGNHE 259 (546)
+++++|.|-..+ .+..+++.... ...+.++++||+++.+.... .....+..+.. .+--++.++||||
T Consensus 3 ~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~-~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~~p~~~~~GNHD 80 (214)
T cd07399 3 LAVLPDTQYYTESYPEVFDAQTDWIVDNAEA-LNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDK-AGIPYSVLAGNHD 80 (214)
T ss_pred EEEecCCCcCCcCCHHHHHHHHHHHHHHHHH-cCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHH-cCCcEEEECCCCc
Confidence 567788774222 12233333321 23467999999999998433 22233333321 2334889999999
Q ss_pred cchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhh
Q psy11688 260 SAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELL 339 (546)
Q Consensus 260 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dll 339 (546)
... ...+.. ..+-.+-+.+.++.-|- ..-++++|-=+ .+..... ...-
T Consensus 81 ~~~-~ld~~~--------~~~ql~WL~~~L~~~~~----~~~iv~~H~p~-~~~~~~~------------------~~~~ 128 (214)
T cd07399 81 LVL-ALEFGP--------RDEVLQWANEVLKKHPD----RPAILTTHAYL-NCDDSRP------------------DSID 128 (214)
T ss_pred chh-hCCCCC--------CHHHHHHHHHHHHHCCC----CCEEEEecccc-cCCCCcC------------------cccc
Confidence 422 111111 12222223333333221 13578888765 2111000 0011
Q ss_pred cCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhc-CCcEEEEeccccccCceEe-----CCCeEEEEeCCCCCCCCCCCce
Q psy11688 340 WSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERN-KLEYIIRSHEVKQDGYEVA-----HDGRCITVFSAPNYCDSVGNKG 413 (546)
Q Consensus 340 Wsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~-~~~~iir~H~~~~~G~~~~-----~~~~~itifsa~~y~~~~~n~~ 413 (546)
|.+ ...-+.+.+.+.++++ ++++++-||.-. .+.... .++.|..+.+........+|..
T Consensus 129 ~~~--------------~~~~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~ 193 (214)
T cd07399 129 YDS--------------DVNDGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGF 193 (214)
T ss_pred ccc--------------ccccHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcce
Confidence 110 0123556788889888 899999999653 233322 2345666655443322223322
Q ss_pred -eEEEeeCCCCceeEEEEee
Q psy11688 414 -AFITMKGKDMVPHFTTYEA 432 (546)
Q Consensus 414 -a~~~~~~~~~~~~~~~~~~ 432 (546)
.++.++....++.+.+|++
T Consensus 194 ~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 194 LRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred EEEEEEecCCCEEEEEeCCC
Confidence 4677755456888888863
No 240
>KOG3785|consensus
Probab=97.81 E-value=0.00013 Score=71.96 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHccCHHHHHHHHHHH--------------HHh
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEV-NPTAIYYANRSFAYLKTEAIGYALNDASKA--------------IEL 97 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~~a~~nla~~~~~~g~~~~Al~~~~~a--------------l~l 97 (546)
++.+.| .|-++|..|+|++|+..|+-+.+. +|++..+.|+|.|++-+|.|.+|.+...+| .++
T Consensus 57 ~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 57 DSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 344445 589999999999999999988774 336899999999999999999998876654 233
Q ss_pred CCC------------cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 98 DQT------------YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 98 ~p~------------~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
+.+ ..+-...+|.+.+..-.|++|++.|.+++.-+|+....-..++-|+.++.-++
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 321 11223456777788888999999999999999998888788888887766553
No 241
>KOG3785|consensus
Probab=97.81 E-value=0.00016 Score=71.47 Aligned_cols=166 Identities=12% Similarity=0.020 Sum_probs=110.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHH
Q psy11688 43 NEHFKNQAYNKAIELYSAAIEVNPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKL 120 (546)
Q Consensus 43 ~~~~~~g~~~~Ai~~~~~al~~~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~e 120 (546)
..+....+|..|+..++-....+.. ...-.-+|.|++.+|+|++|+..|+.+.+.+.-+.+.+.++|-|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 3567789999999999988866653 46667789999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhhccCCCCcchhcccccchhhhhhhhh-------------------hhhchHHHHHHHHHHHHhhhhcCCccc
Q psy11688 121 ALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI-------------------KGKLHRKYAYRILMDIKALFMTQDSLV 181 (546)
Q Consensus 121 A~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~-------------------~~~l~~~~~~~il~~a~eiL~~~p~~~ 181 (546)
|.+.-.+| |+++--...+-.+..+++..+. .-...+.-..++++-++.++...|..+
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 98877765 3333221111111111111110 111222344567777788888888877
Q ss_pred ccccccccccccccccchhHhhHHHHHHHhC
Q psy11688 182 HITVEDEAKFTVCGDIHGQFYDLMNIFELNG 212 (546)
Q Consensus 182 ~i~~~~~~~~~viGDihg~~~~l~~il~~~~ 212 (546)
.+..-.+-+++.+--.|-..+-+.-.+++.+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 7665444344433333334444444455443
No 242
>KOG4234|consensus
Probab=97.80 E-value=0.00018 Score=65.78 Aligned_cols=73 Identities=36% Similarity=0.356 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a 104 (546)
...+.-+.+.|.++.+.+.++.||....+||+++|. ..|+..||.+|-++..|++|+.+|.+.++++|..-++
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 455677899999999999999999999999999996 7888899999999999999999999999999986554
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.80 E-value=2.1e-05 Score=54.78 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 102 ~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
+.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 36789999999999999999999999999999999999877653
No 244
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.79 E-value=0.00014 Score=70.44 Aligned_cols=200 Identities=14% Similarity=0.167 Sum_probs=99.5
Q ss_pred ccccccchhH------hhHHHHHHHhCCCCCCCCeeeeccccccC-----CC--hHHHHHHHhhhhhcCCCeEEEEcccc
Q psy11688 192 TVCGDIHGQF------YDLMNIFELNGLPSPDNPYLFNGDFVDRG-----SF--SVECIFTLFGFKLLYPNHFFMARGNH 258 (546)
Q Consensus 192 ~viGDihg~~------~~l~~il~~~~~~~~~~~~~~lGD~vdrG-----~~--~~e~l~~l~~l~~~~p~~v~~lrGNH 258 (546)
++++|+|... +.+.+.+.... ...+.++++||++|.. +. ..++...+..+... +..++.++|||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GNH 78 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGNR 78 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 4688999432 23344443321 1356799999999952 11 13445556555432 45799999999
Q ss_pred ccchhhhhhcchhhhhhhchHHHHHHHHHhhcccccee--e-ecceEEEEeCCccCCCCCChhhhhccCCCC--------
Q psy11688 259 ESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCH--C-INNKVLVMHGGLFSSDNVTLEDIRTIDRNR-------- 327 (546)
Q Consensus 259 E~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~--~-~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-------- 327 (546)
|...-. .+.+.. . +..+|-.. . -+.+++++||-....+.....-.+++-|..
T Consensus 79 D~~~~~---------------~~~~~~-g-i~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~ 141 (231)
T TIGR01854 79 DFLIGK---------------RFAREA-G-MTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLH 141 (231)
T ss_pred chhhhH---------------HHHHHC-C-CEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHh
Confidence 974211 000000 0 12222222 2 257899999987332222222223332210
Q ss_pred CCCC-chhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCC
Q psy11688 328 QPPD-EGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYC 406 (546)
Q Consensus 328 ~~~~-~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~ 406 (546)
.++. ...+...+|+.........+ -.-....+..+.+.++..+.+++|.||.-.+.-+....++.-++-.+-++..
T Consensus 142 l~~~~r~~l~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~ 218 (231)
T TIGR01854 142 LPLAVRVKLARKIRAESRADKQMKS---QDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWY 218 (231)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCc---chhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCc
Confidence 0110 11223334432211100000 0112235677888899999999999999654434333333333445545442
Q ss_pred CCCCCceeEEEe
Q psy11688 407 DSVGNKGAFITM 418 (546)
Q Consensus 407 ~~~~n~~a~~~~ 418 (546)
..+.++++
T Consensus 219 ----~~~~~~~~ 226 (231)
T TIGR01854 219 ----RQGSILRV 226 (231)
T ss_pred ----cCCeEEEE
Confidence 23666766
No 245
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.77 E-value=0.00025 Score=80.31 Aligned_cols=195 Identities=10% Similarity=-0.019 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIE--VNPTAIYYANRSFAYLKTEAIGYALNDASKAIELD-QTYTKAYYRRAAAY 112 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~-p~~~~a~~~lg~~~ 112 (546)
..|......|.+.|++++|++.|++..+ ..|+...|..+..++.+.|++++|.+.+..+++.. +.+...+..+..+|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 3455566666666777777776666654 34566666666666667777777777666666665 34455566666677
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccc
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFT 192 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~ 192 (546)
.+.|+.++|.+.|+++.+ | |...|..+...+...++. +.+.+++++..+ ....|+......- -..+.
T Consensus 371 ~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~--------~~A~~lf~~M~~-~g~~Pd~~T~~~l-l~a~~ 437 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRG--------TKAVEMFERMIA-EGVAPNHVTFLAV-LSACR 437 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCH--------HHHHHHHHHHHH-hCCCCCHHHHHHH-HHHHh
Confidence 777777777777766543 2 333344333333333322 233333333221 1123332221100 01123
Q ss_pred cccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhh
Q psy11688 193 VCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGF 243 (546)
Q Consensus 193 viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l 243 (546)
..|++..+..-+..+.+..+..|....|-.+.|...|...-.|++.++...
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 345555555555555555566666667788888888888888888776654
No 246
>KOG1130|consensus
Probab=97.77 E-value=4.2e-05 Score=76.79 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCcHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYALNDASKAIEL----D--QTYTK 103 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----~~a~~nla~~~~~~g~~~~Al~~~~~al~l----~--p~~~~ 103 (546)
--.+...|..+++.|++...+..|+.|++.--+ +.+|..+|.+|+.+++|++|+++-..-+.+ . -..++
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 456677899999999999999999999997662 788999999999999999999976554433 2 23456
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCC------Ccchhcccccchhhhhhh
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPN------DKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~l~~~~~~l~~~ 152 (546)
+--++|..+..+|.|++|+.+..+-+.+..+ ...++++++.++...++.
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence 6789999999999999999999887766433 355888999988766543
No 247
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=6.8e-05 Score=69.37 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy11688 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103 (546)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~ 103 (546)
++.+-.|+.++.+.-+|..+...|+|+.|.+.|+..+++||. ..+..|||.+++--|+|+-|.+++.+--+-||++|.
T Consensus 90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 345678888999999999999999999999999999999996 789999999999999999999999999999888764
No 248
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.00022 Score=71.35 Aligned_cols=99 Identities=24% Similarity=0.260 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC--
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEV-----NPT--AIYYANRSFAYLKTEAIGYALNDASKAIELD--QT-- 100 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~--p~-- 100 (546)
.+-++.+...|+.|...|+|++|...|.+|.+. ++. +.+|.+.|.+|.+. ++++|+..+++|+++- .+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 333455555555666666666666666666442 222 45555555555444 6666666666666552 11
Q ss_pred --cHHHHHHHHHHHHHh-cChHHHHHHHHHhhcc
Q psy11688 101 --YTKAYYRRAAAYMSL-GKFKLALRDYEAVHKA 131 (546)
Q Consensus 101 --~~~a~~~lg~~~~~~-g~~~eA~~~~~kal~l 131 (546)
-...+..+|.+|... +++++|++.|++|+.+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 133456666666666 6666666666666655
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=8.8e-05 Score=48.15 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy11688 70 YYANRSFAYLKTEAIGYALNDASKAIELDQT 100 (546)
Q Consensus 70 a~~nla~~~~~~g~~~~Al~~~~~al~l~p~ 100 (546)
+++.+|.+++.+|++++|+++++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=6.5e-05 Score=48.79 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC
Q psy11688 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135 (546)
Q Consensus 102 ~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 135 (546)
+++|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 251
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.65 E-value=0.0021 Score=69.16 Aligned_cols=98 Identities=20% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYM 113 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 113 (546)
.+.++.+|..+-..|++++|+.+.++||+..|+ ...|..+|.++-+.|++++|....+.|-.+|+.+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 567788899898999999999999999999996 8999999999999999999999999999999887776667788888
Q ss_pred HhcChHHHHHHHHHhhccC
Q psy11688 114 SLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 114 ~~g~~~eA~~~~~kal~l~ 132 (546)
+.|+.++|.+......+-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999998887665443
No 252
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.64 E-value=0.00062 Score=63.32 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=44.3
Q ss_pred cccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCCh-HHHHHHHhhhhhcCCCeEEEEccccccch
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFS-VECIFTLFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~-~e~l~~l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
+.+++|+||....+.. .... ....|.+++.||+++++... .+.+..+.. .+..++.++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~-~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILK-AEEADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhh-ccCCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 3578999999988876 2222 22457899999999998763 233333322 2345899999999754
No 253
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.64 E-value=0.00046 Score=60.35 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=72.1
Q ss_pred cccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhh
Q psy11688 193 VCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGE 272 (546)
Q Consensus 193 viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e 272 (546)
+++|.|+..+.+.++.... .+.+.++++||+. .+++..+..+. +..++.++||||
T Consensus 2 viSDtH~~~~~~~~~~~~~---~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D------------- 56 (129)
T cd07403 2 VISDTESPALYSPEIKVRL---EGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD------------- 56 (129)
T ss_pred eeccccCccccchHHHhhC---CCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc-------------
Confidence 6899999877777766642 3456799999973 34455555441 224889999999
Q ss_pred hhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCC
Q psy11688 273 VKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPS 352 (546)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~ 352 (546)
-+++++|+-+ .+.. +.+.
T Consensus 57 ---------------------------~~Ilv~H~pp-~~~~-------------------------~~~~--------- 74 (129)
T cd07403 57 ---------------------------VDILLTHAPP-AGIG-------------------------DGED--------- 74 (129)
T ss_pred ---------------------------cCEEEECCCC-CcCc-------------------------Cccc---------
Confidence 3799999854 1100 0000
Q ss_pred CCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCce
Q psy11688 353 KRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYE 389 (546)
Q Consensus 353 ~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~ 389 (546)
...-|.+.+.+++++.+.++++-||.-....+.
T Consensus 75 ----~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 75 ----FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred ----ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 011356778899999999999999998777665
No 254
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=97.64 E-value=5.3e-05 Score=61.84 Aligned_cols=53 Identities=36% Similarity=0.553 Sum_probs=36.2
Q ss_pred CCCCCCCCccchhhhhhhhhhhhhhhHhhCcchhhhHHHHHHHHHHhcCCCCC
Q psy11688 434 GVSPPEPALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLD 486 (546)
Q Consensus 434 ~~~~~~p~l~~~~~~~~~l~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~ 486 (546)
+..+.+|++++..+|..|+.+|++.||.++.||.+|++.||++..+.....|+
T Consensus 39 e~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~~~~~llk~~Ps 91 (95)
T PF08321_consen 39 EDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILLEAKKLLKQLPS 91 (95)
T ss_dssp -SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHTS-S
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhCcC
Confidence 45578899997779999999999999999999999999999999887665554
No 255
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.63 E-value=0.00014 Score=78.19 Aligned_cols=84 Identities=19% Similarity=0.111 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhh
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~ 148 (546)
.+++.+|+.|-..|++++|+++.++||+..|..++.|...|.++...|++++|.++.+.|-++|+.|.-+....+.-...
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999999887765555544443
Q ss_pred hhhh
Q psy11688 149 VKRM 152 (546)
Q Consensus 149 l~~~ 152 (546)
.++.
T Consensus 275 a~~~ 278 (517)
T PF12569_consen 275 AGRI 278 (517)
T ss_pred CCCH
Confidence 3333
No 256
>KOG4642|consensus
Probab=97.63 E-value=6e-05 Score=70.71 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=85.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
.-.-|..+..-++|..|+..|.+||.++|..+..|.+++.||+++.+++.+.....+|++++|+..-+++.++.+.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44556777788999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred hhhhhhhchHHHHHHHHHHHHhhhhcCC
Q psy11688 151 RMQIKGKLHRKYAYRILMDIKALFMTQD 178 (546)
Q Consensus 151 ~~~~~~~l~~~~~~~il~~a~eiL~~~p 178 (546)
.+ ..+...+.++...++..|
T Consensus 93 ~~--------~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 93 GY--------DEAIKVLQRAYSLLREQP 112 (284)
T ss_pred cc--------cHHHHHHHHHHHHHhcCC
Confidence 55 345566666666666554
No 257
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.60 E-value=6.2e-05 Score=49.16 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=30.3
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHH
Q psy11688 57 LYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89 (546)
Q Consensus 57 ~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~ 89 (546)
+|++||+++|+ +.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 47999999995 9999999999999999999863
No 258
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.55 E-value=0.0013 Score=58.54 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=62.7
Q ss_pred CCCCeeeeccccccCCCh--HHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhcccc
Q psy11688 216 PDNPYLFNGDFVDRGSFS--VECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLP 293 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~--~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP 293 (546)
..+.++++||+++.|... .++..++..+.... ..+++++||||.
T Consensus 35 ~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~--------------------------------- 80 (144)
T cd07400 35 DPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV--------------------------------- 80 (144)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE---------------------------------
Confidence 356799999999988742 23334454444221 369999999997
Q ss_pred ceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcC
Q psy11688 294 LCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNK 373 (546)
Q Consensus 294 ~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~ 373 (546)
++++|..+ .+.... |. ... -+.+.+.+++++.+
T Consensus 81 --------iv~~Hhp~-~~~~~~-----------------------~~---------~~~------~~~~~~~~~l~~~~ 113 (144)
T cd07400 81 --------IVVLHHPL-VPPPGS-----------------------GR---------ERL------LDAGDALKLLAEAG 113 (144)
T ss_pred --------EEEecCCC-CCCCcc-----------------------cc---------ccC------CCHHHHHHHHHHcC
Confidence 89999887 211000 00 000 05677889999999
Q ss_pred CcEEEEeccccccCceE
Q psy11688 374 LEYIIRSHEVKQDGYEV 390 (546)
Q Consensus 374 ~~~iir~H~~~~~G~~~ 390 (546)
+++++-||.-....+.+
T Consensus 114 ~~~~l~GH~H~~~~~~~ 130 (144)
T cd07400 114 VDLVLHGHKHVPYVGNI 130 (144)
T ss_pred CCEEEECCCCCcCeeec
Confidence 99999999987655443
No 259
>KOG4555|consensus
Probab=97.53 E-value=0.00049 Score=58.68 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=66.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcc----hhcccccch
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD----AKAKFTECN 146 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~----~~~~l~~~~ 146 (546)
+...|.+....|+.+.|++-|.+++.+-|+.+.+|.++++++.-+|+.++|+.++++|+++.-.... ++.+.+.++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 3446788889999999999999999999999999999999999999999999999999999654332 334444555
Q ss_pred hhhhhh
Q psy11688 147 KIVKRM 152 (546)
Q Consensus 147 ~~l~~~ 152 (546)
...++.
T Consensus 126 Rl~g~d 131 (175)
T KOG4555|consen 126 RLLGND 131 (175)
T ss_pred HHhCch
Confidence 544443
No 260
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.53 E-value=0.0016 Score=59.17 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVN-P-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQT--YTKAYYRRAAAY 112 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~ 112 (546)
..+.+|+.+...|++.+|...|.+++.-- . ++..+..+|.+.+..+++.+|.+.+++..+.+|. .+..+..+|.+|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 45778999999999999999999998732 1 5888999999999999999999999999999985 577899999999
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
..+|+++.|...|+.++.-.|+- ++.-..+......+
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg 207 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG 207 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence 99999999999999999988863 33333344443333
No 261
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.00056 Score=68.42 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Q psy11688 33 ERAEKLKAEANEHFKN-QAYNKAIELYSAAIEVNP---T----AIYYANRSFAYLKTEAIGYALNDASKAIELDQT---- 100 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p---~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~---- 100 (546)
.-++.+.+.|..+... |++++|+++|.+|+++.. . ...+.+.|.++.++|+|++|++.|+++....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4467778888888888 999999999999998633 1 577889999999999999999999999875422
Q ss_pred --cH-HHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcc
Q psy11688 101 --YT-KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137 (546)
Q Consensus 101 --~~-~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 137 (546)
+. +.++..+.|++..||+-.|.+.+++....+|....
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 12 34567889999999999999999999999986544
No 262
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.51 E-value=0.00079 Score=67.41 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cc--CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLK--TE--AIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~--~g--~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
.+.....-.++++.++++.|.+.++..-+.+.| ....+++.++.. .| ++++|...|+...+..+.++..+..+|.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 344455566788899999999999888777665 334445555444 34 6899999999988887888999999999
Q ss_pred HHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 111 AYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
|+..+|+|++|.+.++++++.+|++++++.++..+....++.
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999988888877766654
No 263
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.50 E-value=0.0051 Score=69.68 Aligned_cols=91 Identities=13% Similarity=-0.014 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIE--VNPTAIYYANRSFAYLKTEAIGYALNDASKAIELD---QTYTKAYYRRAA 110 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~---p~~~~a~~~lg~ 110 (546)
..|......|.+.|+.++|++.|++..+ ..|+...|..+-.++.+.|+.++|.+.|+...+.. |+ ...|.-+..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHH
Confidence 3466677778888888888888888765 45667777777777777777777777777766432 22 223444445
Q ss_pred HHHHhcChHHHHHHHHH
Q psy11688 111 AYMSLGKFKLALRDYEA 127 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~k 127 (546)
+|.+.|++++|.+.+++
T Consensus 471 ~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 471 LLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 55555555555544443
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.0024 Score=56.95 Aligned_cols=98 Identities=27% Similarity=0.225 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------C-------------HHHHHHHHHHHHHccCHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP----------T-------------AIYYANRSFAYLKTEAIGYALN 89 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----------~-------------~~a~~nla~~~~~~g~~~~Al~ 89 (546)
...+.+...|......++.+.++..+.+++.+.. . ..+...++..+...|++++|+.
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 3455666677788888999999999999998632 0 2455667788889999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhc
Q psy11688 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHK 130 (546)
Q Consensus 90 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~ 130 (546)
.+++++.++|-+-.+|..+-.+|..+|+..+|++.|+++.+
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754
No 265
>KOG0495|consensus
Probab=97.47 E-value=0.0019 Score=68.77 Aligned_cols=112 Identities=12% Similarity=-0.033 Sum_probs=98.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChH
Q psy11688 41 EANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFK 119 (546)
Q Consensus 41 ~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 119 (546)
-++...-+++.++|++.+++|++..|+ ...|..+|+++-++++.+.|...|..-++..|..+..|..++.+-...|..-
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 344455678999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 120 LALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 120 eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.|...++++.-.+|++...|...-++....+..
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 999999999999999998876555544444433
No 266
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.45 E-value=0.0039 Score=52.31 Aligned_cols=93 Identities=26% Similarity=0.330 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hC
Q psy11688 39 KAEANEHFKNQAYNKAIELYSAAIEVNP-------------TAIYYANRSFAYLKTEAIGYALNDASKAIE-------LD 98 (546)
Q Consensus 39 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p-------------~~~a~~nla~~~~~~g~~~~Al~~~~~al~-------l~ 98 (546)
...|...++.|-|++|...+.+|++..- ++-.+..++.++..+|+|++++...+++|. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 3455666788999999999999998532 256788999999999999999999999884 45
Q ss_pred CC----cHHHHHHHHHHHHHhcChHHHHHHHHHhhcc
Q psy11688 99 QT----YTKAYYRRAAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 99 p~----~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l 131 (546)
.+ +..+-+++|.++..+|+.++|+..|+.+-+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 4556788999999999999999999988654
No 267
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.43 E-value=0.0027 Score=64.00 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQ-TYTKAYYR 107 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p-~~~~a~~~ 107 (546)
....++....+.|..-+..|+|.+|.+...++-+-.+. ..+|..=|.+--++|+++.|=.+..++-+..+ +.--+...
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 34456677788899999999999999999998877775 56677778888899999999999999999944 34566888
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh----------hhhchHHHHHHHHHHHHhh----
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI----------KGKLHRKYAYRILMDIKAL---- 173 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~----------~~~l~~~~~~~il~~a~ei---- 173 (546)
++......++++.|.....++++..|.++.+.....+++...+.... ...++......+-..+.+-
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887777776665543 3333333333333333221
Q ss_pred -------------hhcCCc----ccccccccccccccccccchhHhhHHHHHHHhC
Q psy11688 174 -------------FMTQDS----LVHITVEDEAKFTVCGDIHGQFYDLMNIFELNG 212 (546)
Q Consensus 174 -------------L~~~p~----~~~i~~~~~~~~~viGDihg~~~~l~~il~~~~ 212 (546)
.+..|. -.++....+..+..+||-..+..-+...+++..
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 112222 122223334556778887777777777887743
No 268
>KOG1941|consensus
Probab=97.39 E-value=0.00053 Score=68.06 Aligned_cols=176 Identities=13% Similarity=0.017 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-----T-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT- 102 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-----~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~- 102 (546)
+..-..+++.+++..+-+.-++.+++.+-+..+.+.. + ..+...+|.++..++.+++|++.|++|++.-.++.
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D 157 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD 157 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 3444566777888877777888888888777776533 1 46667788899999999999999999988754443
Q ss_pred -----HHHHHHHHHHHHhcChHHHHHHHHHhhccCCC----CcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhh
Q psy11688 103 -----KAYYRRAAAYMSLGKFKLALRDYEAVHKARPN----DKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKAL 173 (546)
Q Consensus 103 -----~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~ei 173 (546)
..+..+|..+..+.++++|.-...+|.++... +....+.....+...-.+ ...-..+++.+.++++.++
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal--R~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL--RLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH--HHhcccccHHHHHHHHHHH
Confidence 35677888999999999998888888877543 222222222222111111 1112236778888888887
Q ss_pred hhcCCcccccccccccccccccccchhHhhHHHHHHHh
Q psy11688 174 FMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELN 211 (546)
Q Consensus 174 L~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~~ 211 (546)
-....+-.. .+.++.++||||-...|+++.|.+.
T Consensus 236 al~~Gdra~----~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 236 ALQHGDRAL----QARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHhCChHH----HHHHHHHHHHHHHhcccHhHHHHHH
Confidence 655544221 2345889999999999999888765
No 269
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.39 E-value=0.002 Score=75.40 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCcHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIE--VNPTAIYYANRSFAYLKTEAIGYALNDASKAIE----LDQTYTKAYYRR 108 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~----l~p~~~~a~~~l 108 (546)
...|......|.+.|++++|+..|++..+ ..|+...|..+..+|.+.|++++|.+.+++..+ +.|+ ...|..+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL 585 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence 45566667777777888888887777755 456777777777777777888888777777765 3444 4556667
Q ss_pred HHHHHHhcChHHHHHHHHHhhccC
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
-.+|.+.|++++|.+.|+++.+.+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC
Confidence 777777777777777777777665
No 270
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.37 E-value=0.0043 Score=56.86 Aligned_cols=158 Identities=17% Similarity=0.210 Sum_probs=98.0
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcc
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGF 269 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~ 269 (546)
++.+++|.|+...+..+..+... ..+.+.++.+||++...... .+ .. .....++.++||.|.....
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~-~~~~d~vih~GD~~~~~~~~--~l---~~---~~~~~i~~V~GN~D~~~~~----- 68 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFN-LEKVDAVIHAGDSTSPFTLD--AL---EG---GLAAKLIAVRGNCDGEVDQ----- 68 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhh-hcCCCEEEECCCcCCccchH--Hh---hc---ccccceEEEEccCCCcccc-----
Confidence 47899999999975555554432 33567899999998765332 11 11 0236799999999975432
Q ss_pred hhhhhhhchHHHHHHHHHhhcccccee--ee-cceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCC
Q psy11688 270 EGEVKSKYTDLMAQFFTEVYNWLPLCH--CI-NNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIP 346 (546)
Q Consensus 270 ~~e~~~~~~~~~~~~~~~~~~~lP~~~--~~-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~ 346 (546)
..+|... .+ +-+++++||....+
T Consensus 69 --------------------~~~p~~~~~~~~g~ki~l~HGh~~~~---------------------------------- 94 (172)
T COG0622 69 --------------------EELPEELVLEVGGVKIFLTHGHLYFV---------------------------------- 94 (172)
T ss_pred --------------------ccCChhHeEEECCEEEEEECCCcccc----------------------------------
Confidence 2233332 22 46899999976110
Q ss_pred CCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEe--CCCCCCCCCCCceeEEEeeCCCCc
Q psy11688 347 NGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVF--SAPNYCDSVGNKGAFITMKGKDMV 424 (546)
Q Consensus 347 ~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itif--sa~~y~~~~~n~~a~~~~~~~~~~ 424 (546)
......+..+-+..+.+.+|.||+-.+ .++.. ++ ++-|- |.+.+-+ ++..+++.++..+.+
T Consensus 95 ------------~~~~~~l~~la~~~~~Dvli~GHTH~p-~~~~~-~~-i~~vNPGS~s~pr~--~~~~sy~il~~~~~~ 157 (172)
T COG0622 95 ------------KTDLSLLEYLAKELGADVLIFGHTHKP-VAEKV-GG-ILLVNPGSVSGPRG--GNPASYAILDVDNLE 157 (172)
T ss_pred ------------ccCHHHHHHHHHhcCCCEEEECCCCcc-cEEEE-CC-EEEEcCCCcCCCCC--CCCcEEEEEEcCCCE
Confidence 012355777778889999999999864 33332 22 22222 4444432 356677888666777
Q ss_pred eeEEEEee
Q psy11688 425 PHFTTYEA 432 (546)
Q Consensus 425 ~~~~~~~~ 432 (546)
+....+..
T Consensus 158 ~~~~~~~~ 165 (172)
T COG0622 158 VEVLFLER 165 (172)
T ss_pred EEEEEeec
Confidence 77776654
No 271
>PLN03077 Protein ECB2; Provisional
Probab=97.35 E-value=0.0062 Score=70.76 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCcHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIE--VNPTAIYYANRSFAYLKTEAIGYALNDASKAIEL---DQTYTKAYYRR 108 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l---~p~~~~a~~~l 108 (546)
+...|......|.+.|+.++|++.|++..+ ..||...|..+-.++.+.|+.++|.+.|+...+. .| +.+.|.-+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHH
Confidence 345688888889999999999999998876 5677777777778888899999999999888844 34 34677888
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
..++.+.|++++|.+.+++. .+.|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 88888889888888888765 24444
No 272
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.31 E-value=0.0025 Score=74.47 Aligned_cols=95 Identities=6% Similarity=0.026 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEV--NPTAIYYANRSFAYLKTEAIGYALNDASKAIELD--QTYTKAYYRRAA 110 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~--p~~~~a~~~lg~ 110 (546)
...+...-..+.+.|+.++|.+.|++..+. .|+...|..+...|.+.|++++|++.|++..+.. | +...|..+..
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~ 550 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALIS 550 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 455667778888999999999999998874 5688889999999999999999999999887654 4 4667888899
Q ss_pred HHHHhcChHHHHHHHHHhhc
Q psy11688 111 AYMSLGKFKLALRDYEAVHK 130 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~ 130 (546)
+|.+.|++++|.+.|+++.+
T Consensus 551 a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 273
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.0015 Score=63.17 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCc---chhccccc
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK---DAKAKFTE 144 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~---~~~~~l~~ 144 (546)
.|+-|.-+++.|+|.+|.+.|..-++..|+. +.|+|-||.+++.+|+|++|...|..+.+-.|+++ +++..++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 8999999999999999999999999999986 57899999999999999999999999999888755 45777777
Q ss_pred chhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCc
Q psy11688 145 CNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDS 179 (546)
Q Consensus 145 ~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~ 179 (546)
+...+++.+ .++....++..+.|.
T Consensus 224 ~~~~l~~~d-----------~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTD-----------EACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHH-----------HHHHHHHHHHHHCCC
Confidence 776655542 344444455555554
No 274
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=97.25 E-value=0.0024 Score=68.16 Aligned_cols=62 Identities=23% Similarity=0.403 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcCCc----EEEEeccccc--cCce-EeCCCeEEEE---eCCCCCCCCCCCceeEEEeeCCCC
Q psy11688 361 GPDVTKAFLERNKLE----YIIRSHEVKQ--DGYE-VAHDGRCITV---FSAPNYCDSVGNKGAFITMKGKDM 423 (546)
Q Consensus 361 g~~~~~~fl~~~~~~----~iir~H~~~~--~G~~-~~~~~~~iti---fsa~~y~~~~~n~~a~~~~~~~~~ 423 (546)
.++..+.+|+..|++ .||-||.||. .|=. +-.+||++.| ||.+ |-.+++=.|=-|+..+..+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTLiyNS~gl 578 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTLIYNSYGL 578 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEEEecCCcc
Confidence 567788999999998 9999999996 5654 4579999999 5544 6555555555555543333
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00052 Score=44.51 Aligned_cols=30 Identities=30% Similarity=0.242 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy11688 70 YYANRSFAYLKTEAIGYALNDASKAIELDQ 99 (546)
Q Consensus 70 a~~nla~~~~~~g~~~~Al~~~~~al~l~p 99 (546)
+|+.+|.+|.++|++++|+..++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444444444444444444444444444444
No 276
>KOG2796|consensus
Probab=97.20 E-value=0.0014 Score=62.47 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEV----NP---TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p---~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
+.-...+|...++.||.+.|..+|++.-+. +. +-...-|.+.+|.-.++|.+|...+++.+..||.++.+-.+
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhch
Confidence 333445566666666666666666533322 11 13445555666666666666666666666666666666666
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
.|.|+..+|+...|++..+.+++..|.
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 666666666666666666666666664
No 277
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.18 E-value=0.0013 Score=65.97 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCh-HHHHHHHHH
Q psy11688 50 AYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKF-KLALRDYEA 127 (546)
Q Consensus 50 ~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~-~eA~~~~~k 127 (546)
.+++|.-.|++..+..+ ++..+..+|.|++.+|+|++|.+.+++|++.+|+++.+..+++.+...+|+. +.+.+...+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 69999999999776654 5888999999999999999999999999999999999999999999999999 556677777
Q ss_pred hhccCCCCcch
Q psy11688 128 VHKARPNDKDA 138 (546)
Q Consensus 128 al~l~P~~~~~ 138 (546)
.-..+|+.+-.
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 77788876543
No 278
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.0084 Score=54.55 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=96.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhcChH
Q psy11688 41 EANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIE-LDQTYTKAYYRRAAAYMSLGKFK 119 (546)
Q Consensus 41 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~-l~p~~~~a~~~lg~~~~~~g~~~ 119 (546)
.+....+.=|.+.+.+...+.++..|...-.+.+|.+..++|++.+|...|++++. +..+++.....++++....+++.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 45566667788889999999999999988999999999999999999999999884 66788899999999999999999
Q ss_pred HHHHHHHHhhccCCC--Ccchhcccccchhhhhhhh
Q psy11688 120 LALRDYEAVHKARPN--DKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 120 eA~~~~~kal~l~P~--~~~~~~~l~~~~~~l~~~~ 153 (546)
+|...+++..+.+|. .+.....+++.+...+++.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence 999999999999986 4555666677776666653
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.14 E-value=0.00054 Score=44.41 Aligned_cols=33 Identities=30% Similarity=0.607 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC
Q psy11688 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135 (546)
Q Consensus 103 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 135 (546)
++|+.+|.+|..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999953
No 280
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.13 E-value=0.014 Score=57.63 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCce-eEEEeeC
Q psy11688 362 PDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKG-AFITMKG 420 (546)
Q Consensus 362 ~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~-a~~~~~~ 420 (546)
.+.+.+.+++.+++.++-||.-....... ++--..+-+++.+.-...+.| .++.|.+
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~ 252 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTE 252 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECC
Confidence 35577788899999999999987665432 332122223334333233444 3666733
No 281
>KOG2796|consensus
Probab=97.11 E-value=0.0091 Score=57.15 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHccCHHHHHHHHHHH----HHhCC--CcHHHHHHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNP--TAIYYANRSFAYLKTEAIGYALNDASKA----IELDQ--TYTKAYYRR 108 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--~~~a~~nla~~~~~~g~~~~Al~~~~~a----l~l~p--~~~~a~~~l 108 (546)
..+-...++.-.|.|.-....+.+.++.+| ++.....+|.+.++.|+.+.|..+|+++ -+++. .+.-++-+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345567778888999999999999999997 4889999999999999999999999843 34443 345567788
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
+.+|...++|.+|...|.+++..||.++.+-.+.+-|..-+++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888766655
No 282
>KOG1130|consensus
Probab=97.10 E-value=0.0018 Score=65.38 Aligned_cols=126 Identities=10% Similarity=0.066 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP---T----AIYYANRSFAYLKTEAIGYALNDASKAIEL---- 97 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l---- 97 (546)
.+....-.++-++|+.|+-.|+|++||..-+.-+++.. + -.++.|+|.||.-+|+++.|+++|.+++.+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 45556677888899999999999999999888877644 3 578999999999999999999999887644
Q ss_pred CCCc--HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC------Ccchhcccccchhhhhhhhh
Q psy11688 98 DQTY--TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN------DKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 98 ~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~l~~~~~~l~~~~~ 154 (546)
...- +..-|.+|.+|.-+.++++|+.+.++-+++..+ ...+.+.++..+..++.-++
T Consensus 269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 3333 344788999999999999999999887766543 23355667777666665544
No 283
>KOG2376|consensus
Probab=97.10 E-value=0.0043 Score=65.48 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH---------------------------hCC-----CHHHHHHHHHHHHHccC
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIE---------------------------VNP-----TAIYYANRSFAYLKTEA 83 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~---------------------------~~p-----~~~a~~nla~~~~~~g~ 83 (546)
..+-.+|..+++.|+|++|+..|+..++ ..| +...+||.|.++...|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 3556689999999999999999988743 223 26789999999999999
Q ss_pred HHHHHHHHHHHHHhC-------CCc--------HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 84 IGYALNDASKAIELD-------QTY--------TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 84 ~~~Al~~~~~al~l~-------p~~--------~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
|.+|++.+++|+++. ..+ ......++.++..+|+-++|.+.|...++.+|.|...
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 999999999995431 112 1245678999999999999999999999999987753
No 284
>KOG2376|consensus
Probab=97.07 E-value=0.0061 Score=64.38 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
++++..-+.+-+.++|++|.....+.+...|+ ..+....-.|..++++|++|+...++-....-.+.. .+..|.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHH
Confidence 55666667777888888888888888888885 677777778888888888887544333322222222 2677888888
Q ss_pred hcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhh
Q psy11688 115 LGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQI 154 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~ 154 (546)
++..++|+.+++ .+++.+..++...+++...++++++
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yde 128 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDE 128 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHH
Confidence 888888888887 3445555455555555555555544
No 285
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.04 E-value=0.00088 Score=66.56 Aligned_cols=70 Identities=19% Similarity=0.104 Sum_probs=48.6
Q ss_pred cccccccccchh----HhhHHHHHHHhCCCCCCCCeeeeccccccC--CChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 189 AKFTVCGDIHGQ----FYDLMNIFELNGLPSPDNPYLFNGDFVDRG--SFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 189 ~~~~viGDihg~----~~~l~~il~~~~~~~~~~~~~~lGD~vdrG--~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
-++..++|+|.. ...+.++++..... ..+.+++.||++|.+ ....++...+..++... .++.+.||||..
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~-~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQ-KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhc-CCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 458999999965 44566666654322 456799999999943 23345556667666543 499999999964
No 286
>KOG3824|consensus
Probab=97.03 E-value=0.0046 Score=60.27 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
+.+-.+.|.-..+.|+.++|...|+.|++++|++++++...|.....-.+.-+|-++|-+|+.++|.+.+++.+.++...
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 44555666667789999999999999999999999999999999999999999999999999999999999998888766
Q ss_pred hhhhhh
Q psy11688 148 IVKRMQ 153 (546)
Q Consensus 148 ~l~~~~ 153 (546)
.....+
T Consensus 196 lV~~iD 201 (472)
T KOG3824|consen 196 LVSAID 201 (472)
T ss_pred HHHHHH
Confidence 655543
No 287
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.00 E-value=0.017 Score=53.24 Aligned_cols=117 Identities=25% Similarity=0.212 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CcHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSF-AYLKTEAIGYALNDASKAIELDQ---TYTKAY 105 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~-~~~~~g~~~~Al~~~~~al~l~p---~~~~a~ 105 (546)
.+.....+...|......+++..|+..+.+++..+++ .......+. ++...+++++|+..+.+++..+| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 3444556666777777777777777777777776664 233333444 67777777777777777777666 355566
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhccCCC-Ccchhcccccchh
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKARPN-DKDAKAKFTECNK 147 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~l~~~~~ 147 (546)
..++..+...+++++|+..+.+++...+. .......++.++.
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 66666677777777777777777777776 3444444444443
No 288
>KOG2471|consensus
Probab=96.99 E-value=0.00055 Score=70.33 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCC------C---HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----h
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAA-IEVNP------T---AIYYANRSFAYLKTEAIGYALNDASKAIE-----L 97 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~a-l~~~p------~---~~a~~nla~~~~~~g~~~~Al~~~~~al~-----l 97 (546)
+.+.+++.+.+.+|..|+|.+|.+.+... +...| . ...|.|+|.++++++.|.-+...|.+|++ +
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999887554 33333 1 45678999999999999999999999996 1
Q ss_pred ----C---------CCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 98 ----D---------QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 98 ----~---------p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
. ....+..|+.|..|...|+.-.|-+||.++.+....++..|..+++|....
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1 224567899999999999999999999999999999999999999987543
No 289
>PLN03077 Protein ECB2; Provisional
Probab=96.99 E-value=0.0034 Score=72.93 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=35.3
Q ss_pred ccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhh
Q psy11688 194 CGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFK 244 (546)
Q Consensus 194 iGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~ 244 (546)
.|++.....-+..+.+..+..|+...|-.+.|...|...-.|+..++..+.
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 355555555555555555666666678888888888888888888877764
No 290
>KOG0546|consensus
Probab=96.99 E-value=0.0007 Score=67.28 Aligned_cols=120 Identities=30% Similarity=0.377 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C--C----------------C-HHHHHHHHHHHHHccCHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEV-N--P----------------T-AIYYANRSFAYLKTEAIGYALNDAS 92 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~--p----------------~-~~a~~nla~~~~~~g~~~~Al~~~~ 92 (546)
+..+...+.|+..+++++|+.|..-|.++.+. + | . ...+.+.+.+-++.+.+..|+....
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 44556677899999999999999999999763 2 1 1 3567789999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 93 KAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 93 ~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.+++.++...++++++++++..+.++++|+++++.+....|++..+...+........+.
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999998877766666555444
No 291
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.97 E-value=0.019 Score=54.09 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=29.1
Q ss_pred CCCCeeeeccccccCCCh---HHHHHHHhhhhhcCCCeEEEEccccc
Q psy11688 216 PDNPYLFNGDFVDRGSFS---VECIFTLFGFKLLYPNHFFMARGNHE 259 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~---~e~l~~l~~l~~~~p~~v~~lrGNHE 259 (546)
..+.++++||+++.+... .+.+..+.+.....+-.++++.||||
T Consensus 41 ~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 41 KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 446799999999977653 44444333322223346889999999
No 292
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.95 E-value=0.012 Score=59.49 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
++.....+..+-+.|++++|.+...++++..-++......+ ..+.++++.=++..++.++..|+++..+..+|..+.+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 44445567778899999999999999999877766333333 3478899999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 115 LGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
.+.|.+|...++.|++..|+. ..+..++.++...++.
T Consensus 341 ~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~ 377 (400)
T COG3071 341 NKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEP 377 (400)
T ss_pred hhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCCh
Confidence 999999999999999998864 3445566666666555
No 293
>KOG4340|consensus
Probab=96.91 E-value=0.0065 Score=59.10 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHH
Q psy11688 45 HFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123 (546)
Q Consensus 45 ~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~ 123 (546)
+.+..+|++||++...-.+.+| +-..+..+|.||+...+|..|..+|++.-.+.|+....-+..|+.+++.+.+..|++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4678899999999999999999 578899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhh
Q psy11688 124 DYEAVH 129 (546)
Q Consensus 124 ~~~kal 129 (546)
......
T Consensus 100 V~~~~~ 105 (459)
T KOG4340|consen 100 VAFLLL 105 (459)
T ss_pred HHHHhc
Confidence 776543
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.90 E-value=0.0041 Score=64.67 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=81.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCC--------------
Q psy11688 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIE-------LDQ-------------- 99 (546)
Q Consensus 42 g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~-------l~p-------------- 99 (546)
-..+.+..+.+.-++.-.+|++++|+ +.||.-+|.-. ..-..+|.+.+++|++ .+.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 44567889999999999999999997 78888887632 1223445555555443 221
Q ss_pred --C--cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC--Ccchhcccccchhhhhhhh
Q psy11688 100 --T--YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN--DKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 100 --~--~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~l~~~~~~l~~~~ 153 (546)
. ...+-.++|+|..++|+.+||++.++..++..|. +..++.++.+++..++++.
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0 1234567899999999999999999999998875 4557788888877777663
No 295
>PRK10941 hypothetical protein; Provisional
Probab=96.88 E-value=0.0036 Score=61.66 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
.....|+=.+|++.++++.|+++.++.+.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999999999887654
No 296
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.87 E-value=0.0051 Score=65.92 Aligned_cols=101 Identities=22% Similarity=0.172 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-----TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-----~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a 104 (546)
.=|+.+-.++..|..+..+|+.++|++.|++|+.... ....++.+|.+++.+.+|++|..++.+.++.+. ++++
T Consensus 262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka 340 (468)
T PF10300_consen 262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKA 340 (468)
T ss_pred hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHH
Confidence 3466677789999999999999999999999986444 268899999999999999999999999999664 4454
Q ss_pred --HHHHHHHHHHhcCh-------HHHHHHHHHhhcc
Q psy11688 105 --YYRRAAAYMSLGKF-------KLALRDYEAVHKA 131 (546)
Q Consensus 105 --~~~lg~~~~~~g~~-------~eA~~~~~kal~l 131 (546)
+|..|-|+..+++. ++|.+.+.++-.+
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 45569999999999 7777777766544
No 297
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.013 Score=58.44 Aligned_cols=100 Identities=10% Similarity=0.015 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLK-TEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~-~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
+|....+...+.+..+.|...|.+|.+..+ ....|...|..-+. .++.+.|...|+++++..|.+...|.....-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456667777778889999999999985444 47888888988667 5666669999999999999999999999999999
Q ss_pred hcChHHHHHHHHHhhccCCCCc
Q psy11688 115 LGKFKLALRDYEAVHKARPNDK 136 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l~P~~~ 136 (546)
.++.+.|...|++++..-|...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999998877655
No 298
>KOG4340|consensus
Probab=96.82 E-value=0.011 Score=57.43 Aligned_cols=125 Identities=12% Similarity=0.083 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHH------------
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAI------------ 95 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al------------ 95 (546)
+.+|+.-..+..+|-+|+...+|..|.++|++.-...|. +......|..+++.+.+.+|+.......
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345555667888999999999999999999999999996 5666667788888888888776443321
Q ss_pred ------------------HhCC--CcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 96 ------------------ELDQ--TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 96 ------------------~l~p--~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
+.-| +......+.|-+.++.|+|++|++-|+.|++..--++-..++++-+....+++.
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qya 195 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYA 195 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHH
Confidence 2234 345567888889999999999999999999998888888888888776655553
No 299
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.023 Score=55.68 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHH----------------------
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDAS---------------------- 92 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~---------------------- 92 (546)
+.-+..|......|++.+|...+..+++.+|+ ..+...+|.||...|+.+.|...+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34566788899999999999999999999995 8899999999999999987665332
Q ss_pred ------------HHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 93 ------------KAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 93 ------------~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
+.+..||++..+-+.+|..+...|++++|.+.+-..++.+.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 23345677777777777777777777777766666665543
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.80 E-value=0.037 Score=50.96 Aligned_cols=100 Identities=28% Similarity=0.204 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH-
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIE--VNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA- 110 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~- 110 (546)
.......+..+...+++..++..+..++. ..+. ...+...+..+...+++.+|+..+.+++..++.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45567788888999999999999999987 4554 7889999999999999999999999999998887666666677
Q ss_pred HHHHhcChHHHHHHHHHhhccCCC
Q psy11688 111 AYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
++...+++++|...|++++..+|.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~ 162 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE 162 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 899999999999999999887764
No 301
>KOG2053|consensus
Probab=96.75 E-value=0.0091 Score=65.88 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=79.5
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHH
Q psy11688 45 HFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123 (546)
Q Consensus 45 ~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~ 123 (546)
....+++.+|+....+.++..|+ ..+....|..+.++|++++|...++..-...+++......+-.||..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45667888888888888888887 56677778888888888888866666556666777777888888888888888888
Q ss_pred HHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 124 DYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 124 ~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
+|+++++.+|+ .+....+=.++...+.+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 88888888887 55444444444444433
No 302
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=96.74 E-value=0.002 Score=61.83 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=48.7
Q ss_pred ccccccccchhHh----hHHHHHHHhCCCCCCCCeeeeccccccCCChH-HHHHHHhhhhhcCCCeEEEEccccccch
Q psy11688 190 KFTVCGDIHGQFY----DLMNIFELNGLPSPDNPYLFNGDFVDRGSFSV-ECIFTLFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 190 ~~~viGDihg~~~----~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~-e~l~~l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
++..++|+|.... .+.++++..... ..+.+++.||+++.+.... ++...+..+. .+..++++.||||...
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINAL-KPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYYS 77 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhcc-CCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCccccc
Confidence 4788999997533 456666654322 3467999999999987764 5555555543 2346999999999743
No 303
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=96.71 E-value=0.0028 Score=57.00 Aligned_cols=67 Identities=21% Similarity=0.121 Sum_probs=46.1
Q ss_pred hhCcchhhhHHH--HHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHH--HHhcccCCCcEEEEcCCC
Q psy11688 461 AQGKLHRKYAYR--ILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTL--FGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 461 ~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l--~~~~~~~~~~~~~~rgnh 527 (546)
.-+|+|+.+... ....+..........-.|++||++|+|..+.+..... ...+...+..+++++|||
T Consensus 5 ~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 5 VISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred EEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 347888886543 1233333333444466899999999999998888765 555556677799999999
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.018 Score=53.01 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY-TKAYYRRA 109 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~-~~a~~~lg 109 (546)
+-+...+|..++..+++++|+..++.++....| +.+-..+|.+...+|++++|+..++.... +.+ +..-..+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 334577888999999999999999999975443 67788999999999999999887654332 222 22356689
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCC
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPND 135 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~ 135 (546)
.++...|+-++|+..|+++++.+++.
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99999999999999999999987543
No 305
>KOG4507|consensus
Probab=96.66 E-value=0.0018 Score=67.97 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=88.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChH
Q psy11688 42 ANEHFKNQAYNKAIELYSAAIEVNPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFK 119 (546)
Q Consensus 42 g~~~~~~g~~~~Ai~~~~~al~~~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 119 (546)
|...-..|+...|+.++..|+-..|. .....++|.+.++.+-.-+|-..+.+++.++...+-.++.+|.+|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33334579999999999999999994 6778999999999999999999999999999888888999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhc
Q psy11688 120 LALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 120 eA~~~~~kal~l~P~~~~~~~ 140 (546)
.|++.|+.|++++|+++....
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHH
Confidence 999999999999999887653
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.66 E-value=0.0024 Score=46.14 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy11688 70 YYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 70 a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~ 105 (546)
.++.+|.++.++|+|++|..+++.+++++|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555666666666666666666666555543
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.62 E-value=0.0092 Score=43.10 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhh
Q psy11688 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149 (546)
Q Consensus 103 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l 149 (546)
+.+|.+|..+.++|+|++|.++.+.+++.+|+|..+......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999887766666544
No 308
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.60 E-value=0.03 Score=56.95 Aligned_cols=94 Identities=21% Similarity=0.371 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC------C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEV--------NP------T-----AIYYANRSFAYLKTEAIGYALNDASKAIE 96 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p------~-----~~a~~nla~~~~~~g~~~~Al~~~~~al~ 96 (546)
++....|...|++++|..|+.-|..|+++ +| + +..-..+..||+++++.+-|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34455677889999999999999999886 22 1 23455799999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhh
Q psy11688 97 LDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVH 129 (546)
Q Consensus 97 l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal 129 (546)
++|.++..+.+.|.|...+.+|.+|-+.+--|.
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987776554
No 309
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.58 E-value=0.0019 Score=61.66 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhcCCcEEEEecccccc
Q psy11688 361 GPDVTKAFLERNKLEYIIRSHEVKQD 386 (546)
Q Consensus 361 g~~~~~~fl~~~~~~~iir~H~~~~~ 386 (546)
....+.+.++..+.+.+|-||.-.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~i~GH~H~~~ 202 (217)
T cd07398 177 FEEAVARLARRKGVDGVICGHTHRPA 202 (217)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 45556777889999999999997643
No 310
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.56 E-value=0.0059 Score=55.97 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchh
Q psy11688 216 PDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~ 263 (546)
+.+.++++||+++++..+.. +..+.++ +..+++++||||....
T Consensus 42 ~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 42 PDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred CCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 35789999999999986643 4444433 3469999999997654
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.56 E-value=0.0033 Score=40.15 Aligned_cols=31 Identities=32% Similarity=0.600 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
+++.+|.++..+|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 312
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.022 Score=54.84 Aligned_cols=112 Identities=15% Similarity=0.031 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhc---c
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT---KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA---K 141 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~---~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~---~ 141 (546)
+.-+++-|...++.|+|++|+..|+++....|..+ ++...++.++.+.++|++|+...++-+++.|.++.+-+ .
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 67799999999999999999999999999988654 57889999999999999999999999999999887532 2
Q ss_pred cccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccc
Q psy11688 142 FTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVH 182 (546)
Q Consensus 142 l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~ 182 (546)
.+.++. ...+ ...-+.......+....+.+.+.|+...
T Consensus 114 kgLs~~--~~i~-~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 114 KGLSYF--FQID-DVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHh--ccCC-ccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 222210 0000 1112234556667777777777777543
No 313
>KOG0551|consensus
Probab=96.52 E-value=0.0063 Score=60.07 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=85.4
Q ss_pred cCHHHHHHHHHHHHHhC-----CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcC
Q psy11688 49 QAYNKAIELYSAAIEVN-----PT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQT----YTKAYYRRAAAYMSLGK 117 (546)
Q Consensus 49 g~~~~Ai~~~~~al~~~-----p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~~g~ 117 (546)
|++..-+..++ ++..+ |+ +.-|-.-|.-|++.++|..|+..|.+.|+-.-. +.-.|.++|-|...+|+
T Consensus 56 gd~~~~~~~Lq-slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N 134 (390)
T KOG0551|consen 56 GDPNPDNVCLQ-SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN 134 (390)
T ss_pred CCCCccHHHHH-HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH
Confidence 55544444433 34444 33 777889999999999999999999999987533 34569999999999999
Q ss_pred hHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 118 FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 118 ~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
|..|+.+..+|++++|.+.-++..-+.|...+++.+
T Consensus 135 yRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 135 YRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999988887764
No 314
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.50 E-value=0.015 Score=62.84 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=42.9
Q ss_pred cccccccccc-hhH----hhHHHHHHHh-CC-------CCCCCCeeeecccccc-CCCh---------------HHHHHH
Q psy11688 189 AKFTVCGDIH-GQF----YDLMNIFELN-GL-------PSPDNPYLFNGDFVDR-GSFS---------------VECIFT 239 (546)
Q Consensus 189 ~~~~viGDih-g~~----~~l~~il~~~-~~-------~~~~~~~~~lGD~vdr-G~~~---------------~e~l~~ 239 (546)
..++.++|+| |.- ..+..+++.. |. ....+.++++||++|. |..+ .++..+
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 4578999999 432 2233333332 22 2234679999999995 2211 134445
Q ss_pred HhhhhhcCCCeEEEEccccccch
Q psy11688 240 LFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 240 l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
+..+. ..-.|++++||||...
T Consensus 324 L~~L~--~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 324 LKQIP--EDIKIIISPGNHDAVR 344 (504)
T ss_pred HHhhh--cCCeEEEecCCCcchh
Confidence 55443 2246999999999755
No 315
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=96.44 E-value=0.016 Score=53.27 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=29.6
Q ss_pred CCCCeeeeccccccCCChH--H---HHHHHhhhhh-cC----CCeEEEEccccccch
Q psy11688 216 PDNPYLFNGDFVDRGSFSV--E---CIFTLFGFKL-LY----PNHFFMARGNHESAY 262 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~~--e---~l~~l~~l~~-~~----p~~v~~lrGNHE~~~ 262 (546)
..+.++++||++|.+.... + .+..+..+.. .. +-.++.++||||...
T Consensus 45 ~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 45 KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 4567999999999887432 2 2222222211 11 346999999999753
No 316
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.0075 Score=57.25 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=96.4
Q ss_pred HHHHHHHhCCCCCCCCeeeeccccc--cCCC-----hHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhh
Q psy11688 204 LMNIFELNGLPSPDNPYLFNGDFVD--RGSF-----SVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSK 276 (546)
Q Consensus 204 l~~il~~~~~~~~~~~~~~lGD~vd--rG~~-----~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~ 276 (546)
+.+.++. ..+..+.++++||++| .|.+ -.+|...+..+. .....++.+.|||| ..+...++-.
T Consensus 19 fl~Fl~~--~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i~GN~D-fll~~~f~~~------ 88 (237)
T COG2908 19 FLDFLRE--EAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYIHGNHD-FLLGKRFAQE------ 88 (237)
T ss_pred HHHHHHh--ccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEecCchH-HHHHHHHHhh------
Confidence 4444443 2335678999999986 2322 124444444433 34568999999999 4443332211
Q ss_pred chHHHHHHHHHhhccccceeee---cceEEEEeCCccCCCCCChhhhhccCCC-------CCCCC--chhhhhhhcCCCC
Q psy11688 277 YTDLMAQFFTEVYNWLPLCHCI---NNKVLVMHGGLFSSDNVTLEDIRTIDRN-------RQPPD--EGLMCELLWSDPQ 344 (546)
Q Consensus 277 ~~~~~~~~~~~~~~~lP~~~~~---~~~~~~vHgGi~~~~~~~~~~i~~~~r~-------~~~~~--~~~~~dllWsdp~ 344 (546)
.-.+.-+|-..++ +.+++++||....+........+...+. ...+- ...+..-+|+...
T Consensus 89 ---------~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s~ 159 (237)
T COG2908 89 ---------AGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLSS 159 (237)
T ss_pred ---------cCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhhH
Confidence 0112234544433 6899999999855443222222211110 00000 0011223555431
Q ss_pred CCCCCCCCCCCCe---eeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeCC
Q psy11688 345 IPNGRAPSKRGVG---VHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGK 421 (546)
Q Consensus 345 ~~~~~~~~~rg~~---~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~~ 421 (546)
|........ ....+..+.+-++++|++.+|.||.-.+..-.+.--.+| -. |.-...|+++++.++
T Consensus 160 ----~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi----~l----GdW~~~~s~~~v~~~ 227 (237)
T COG2908 160 ----WAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYI----NL----GDWVSEGSILEVDDG 227 (237)
T ss_pred ----HhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEE----ec----CcchhcceEEEEecC
Confidence 111111111 124677788889999999999999987655544221111 11 111256889999543
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.32 E-value=0.005 Score=57.75 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=56.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcc
Q psy11688 77 AYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137 (546)
Q Consensus 77 ~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 137 (546)
...+.++.+.|.+.+.+|+++-|++...|+++|....+.|+++.|.+.|++.++++|++-.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456789999999999999999999999999999999999999999999999999998654
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.29 E-value=0.0079 Score=38.33 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy11688 70 YYANRSFAYLKTEAIGYALNDASKAIELDQT 100 (546)
Q Consensus 70 a~~nla~~~~~~g~~~~Al~~~~~al~l~p~ 100 (546)
+++++|.++.++|++++|++.++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777777765
No 319
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.27 E-value=0.15 Score=50.05 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=26.0
Q ss_pred eeCHHHHHHHHHhcCCcEEEEeccccccCceEeCC
Q psy11688 359 HFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHD 393 (546)
Q Consensus 359 ~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~ 393 (546)
.-+++.++.+|+..+-.+|.-||+- ++-++.|.
T Consensus 202 ~l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~h~ 234 (257)
T cd08163 202 LLEPSLSEVILKAVQPVIAFSGDDH--DYCEVVHE 234 (257)
T ss_pred ecCHHHHHHHHHhhCCcEEEecCCC--ccceeEcc
Confidence 3578999999999999999999886 44444443
No 320
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.24 E-value=0.011 Score=54.29 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=28.6
Q ss_pred CCCeeeeccccccCCChH-HHHHHH-hhhhhcCCCeEEEEccccccchh
Q psy11688 217 DNPYLFNGDFVDRGSFSV-ECIFTL-FGFKLLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 217 ~~~~~~lGD~vdrG~~~~-e~l~~l-~~l~~~~p~~v~~lrGNHE~~~~ 263 (546)
.+.++++||+++...... +....+ .......+-.+++++||||....
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~~ 90 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGLP 90 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccchh
Confidence 467999999998654332 111111 11112234579999999997543
No 321
>KOG0545|consensus
Probab=96.15 E-value=0.017 Score=54.74 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC----------cHHHHHHHHHHHHHhcChHHHHHHHHHhh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIEL--------DQT----------YTKAYYRRAAAYMSLGKFKLALRDYEAVH 129 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l--------~p~----------~~~a~~~lg~~~~~~g~~~eA~~~~~kal 129 (546)
..++...|.-++++|+|.+|...|+.|+.. .|. ....+.+.++|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 457788999999999999999999998832 233 33468899999999999999999999999
Q ss_pred ccCCCCcchhcccccchhh
Q psy11688 130 KARPNDKDAKAKFTECNKI 148 (546)
Q Consensus 130 ~l~P~~~~~~~~l~~~~~~ 148 (546)
..+|.|..+++..+.+...
T Consensus 258 ~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred hcCCchHHHHHHHHHHHHh
Confidence 9999999999888776643
No 322
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.14 E-value=0.0071 Score=58.86 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=44.2
Q ss_pred cccccccchhH------hhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccc
Q psy11688 191 FTVCGDIHGQF------YDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 191 ~~viGDihg~~------~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
+..++|+|... ..+.++++..... +.+.+++.||+++..+.+.+.+..+.++ .+..++++.||||..
T Consensus 2 i~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 2 IAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred EEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 56788999543 1244555544322 3567999999999876555555544432 335699999999964
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.14 E-value=0.0078 Score=37.15 Aligned_cols=30 Identities=37% Similarity=0.623 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
+|+.+|.++..++++++|+.+|+++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555555555555555555555555544
No 324
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.13 E-value=0.0098 Score=39.19 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=10.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHH
Q psy11688 71 YANRSFAYLKTEAIGYALNDASK 93 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~ 93 (546)
|.++|.+|.++|+|++|++.|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 325
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.11 E-value=0.047 Score=45.62 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=75.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhCCCcHHHH
Q psy11688 41 EANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAI-----------GYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 41 ~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~-----------~~Al~~~~~al~l~p~~~~a~ 105 (546)
+|..++++|++-+|++..+..+...++ +..+..-|.++.++..- -.|++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 577899999999999999999998884 36677778887665432 248899999999999998888
Q ss_pred HHHHHHHHHhcChHHHHHHHHHhhcc
Q psy11688 106 YRRAAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 106 ~~lg~~~~~~g~~~eA~~~~~kal~l 131 (546)
+.+|.=+-....|++++.-.+++|..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888888888888888876
No 326
>KOG3824|consensus
Probab=96.09 E-value=0.025 Score=55.30 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
+.+.+......|....+.|+-++|...|+.|+.++|+ ++++...|...-.-++.-+|-++|-+|+.++|.|.+|+.+++
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3445555667777888999999999999999999995 999999999998889999999999999999999999998876
Q ss_pred HHH
Q psy11688 110 AAY 112 (546)
Q Consensus 110 ~~~ 112 (546)
...
T Consensus 192 RT~ 194 (472)
T KOG3824|consen 192 RTT 194 (472)
T ss_pred ccc
Confidence 543
No 327
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.02 E-value=0.016 Score=55.82 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=29.0
Q ss_pred CCCCeeeeccccccCCC---hHHHHHHHhhhhhcCCCeEEEEccccccch
Q psy11688 216 PDNPYLFNGDFVDRGSF---SVECIFTLFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~---~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
..+.++++||+.+.... ..++.+++..+. ..+++++||||...
T Consensus 58 ~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 58 GIEALIINGDLKHEFKKGLEWRFIREFIEVTF----RDLILIRGNHDALI 103 (225)
T ss_pred CCCEEEEcCccccccCChHHHHHHHHHHHhcC----CcEEEECCCCCCcc
Confidence 34679999999976554 233333444432 47999999999754
No 328
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.00 E-value=0.08 Score=61.90 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT------AIYYANRSFAYLKTEAIGYALNDASKAIELDQT------YT 102 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~------~~ 102 (546)
.......|..+...|++++|...++++++..|. ..+...+|.++...|++++|...+++++..... ..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 444556788889999999999999999986552 356788999999999999999999999976432 13
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhhccC
Q psy11688 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 103 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
.++..+|.++...|++++|...+++++.+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467788999999999999999999998863
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.00 E-value=0.01 Score=36.57 Aligned_cols=32 Identities=38% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIELDQT 100 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~ 100 (546)
.++.++|.++..++++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677777777788888888888777777765
No 330
>KOG1586|consensus
Probab=96.00 E-value=0.1 Score=49.36 Aligned_cols=103 Identities=24% Similarity=0.208 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-
Q psy11688 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP------T-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY- 101 (546)
Q Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~- 101 (546)
...+.++-+...|+.|-..++++.|=..|.+|-+..- + +..|..-+.|| +..+.++|+..+++++++--+-
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhh
Confidence 4445566666667777777888888888888865422 1 45566666666 4448888888888888875432
Q ss_pred -----HHHHHHHHHHHHHh-cChHHHHHHHHHhhccCC
Q psy11688 102 -----TKAYYRRAAAYMSL-GKFKLALRDYEAVHKARP 133 (546)
Q Consensus 102 -----~~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~P 133 (546)
.+-+..+|.+|..- .++++|+.+|+++-+...
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 22356778888664 888888888888765543
No 331
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.96 E-value=0.0082 Score=39.55 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhccC
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
+|.++|.+|..+|+|++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999976553
No 332
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.94 E-value=0.096 Score=54.84 Aligned_cols=109 Identities=14% Similarity=0.018 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIEL-DQTYTKAYYRRAAAY 112 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~a~~nla~~~~~~g~~~~Al~~~~~al~l-~p~~~~a~~~lg~~~ 112 (546)
+.+.+|+++.+.|+.++|++.+...++..|. ..+.+|+..+++.+++|.++.+.+.+-=++ -|+.+...|..|...
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3455677777777777777777777766662 456777777777777777766555443222 133444444444433
Q ss_pred HH-hcC---------------hHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 113 MS-LGK---------------FKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 113 ~~-~g~---------------~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
.+ .++ -..|++...+|.+.||..+..+.....+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~L 389 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSL 389 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCC
Confidence 22 111 1235566777777777666655444443
No 333
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.91 E-value=0.013 Score=57.53 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=37.5
Q ss_pred hHHHHHHHhCCCCCCCCeeeeccccccCCChHHHH----HHHhhhhhcCCCeEEEEccccccc
Q psy11688 203 DLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECI----FTLFGFKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 203 ~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l----~~l~~l~~~~p~~v~~lrGNHE~~ 261 (546)
.+.++++.+.. ...+.+++.||++|+...+.++. .++..|+...|-.++++.||||..
T Consensus 27 ~l~~l~~~~~~-~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 27 FLDDLLEFAKA-EQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHH-cCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 34445444322 24567999999999986665443 344444433335799999999974
No 334
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.90 E-value=0.07 Score=47.35 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIE 96 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~ 96 (546)
....++...+..+...|++++|+..+++++..+| +..+|..+-.+|...|+..+|++.|++..+
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445566777788899999999999999999999 588999999999999999999999987754
No 335
>PRK09453 phosphodiesterase; Provisional
Probab=95.89 E-value=0.015 Score=54.04 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=39.1
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCc--------hHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSF--------SVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~--------~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
..|+|+.+. .+.++++......-...+++||++|+|+. ..|++..|-. ....++++||||
T Consensus 6 iSD~Hg~~~--~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~----~~~~v~~V~GNh 73 (182)
T PRK09453 6 ASDTHGSLP--ATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA----YADKIIAVRGNC 73 (182)
T ss_pred EEeccCCHH--HHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh----cCCceEEEccCC
Confidence 468888753 34455444322334679999999999873 3455555533 223589999999
No 336
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.88 E-value=0.11 Score=60.77 Aligned_cols=100 Identities=11% Similarity=0.007 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-----T--AIYYANRSFAYLKTEAIGYALNDASKAIELDQT------ 100 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-----~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~------ 100 (546)
...++...|..+...|++++|...+.+++.... . ..++.++|.++...|++++|.+.+++++++-..
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 345667788999999999999999999997633 1 457788999999999999999999999986321
Q ss_pred --cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 101 --YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 101 --~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
....+..+|.++...|++++|...+++++.+..
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 233466789999999999999999999988744
No 337
>KOG1308|consensus
Probab=95.86 E-value=0.0025 Score=63.10 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=67.3
Q ss_pred HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 79 LKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 79 ~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
+..|.+++|++.+.+|++++|.....|-.+|.++.++++...|+++|..|++++|+...-+...+.....++...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 457789999999999999999999999999999999999999999999999999998887777777776666554
No 338
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.82 E-value=0.016 Score=57.44 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=43.9
Q ss_pred cccccccc--h-----------hHhhHHHHHHHhCCCCCCCCeeeeccccccCCC-hHHHHHHHhhhhhcCCCeEEEEcc
Q psy11688 191 FTVCGDIH--G-----------QFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSF-SVECIFTLFGFKLLYPNHFFMARG 256 (546)
Q Consensus 191 ~~viGDih--g-----------~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~-~~e~l~~l~~l~~~~p~~v~~lrG 256 (546)
+.+++|+| . ..+.+.++++..... ..+.++++||+++.|.. +.+-+..+.+.-...+-.++.++|
T Consensus 3 ~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~-~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 3 FGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE-SLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred EEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC-CCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecC
Confidence 56778888 1 235566666665333 25679999999998863 222222222222222346999999
Q ss_pred ccccchh
Q psy11688 257 NHESAYM 263 (546)
Q Consensus 257 NHE~~~~ 263 (546)
|||....
T Consensus 82 NHD~~~~ 88 (267)
T cd07396 82 NHDLYNP 88 (267)
T ss_pred ccccccc
Confidence 9998643
No 339
>KOG4507|consensus
Probab=95.80 E-value=0.028 Score=59.34 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=91.5
Q ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 37 KLKAEANEHFK-NQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 37 ~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~---~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
.+-..+..|++ +|+..+|+.++..|+...|+ ..+...+|-++.+.|...+|--.+..|+.-.|.....++.+|.++
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~ 293 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIY 293 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHH
Confidence 34556666654 79999999999999998883 778899999999999999999888889988888888899999999
Q ss_pred HHhcChHHHHHHHHHhhccCCCCcchhcccc
Q psy11688 113 MSLGKFKLALRDYEAVHKARPNDKDAKAKFT 143 (546)
Q Consensus 113 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~ 143 (546)
..++++.....+|..+.+.+|.........+
T Consensus 294 aml~~~N~S~~~ydha~k~~p~f~q~~~q~~ 324 (886)
T KOG4507|consen 294 AMLGEYNHSVLCYDHALQARPGFEQAIKQRK 324 (886)
T ss_pred HHHhhhhhhhhhhhhhhccCcchhHHHHHHH
Confidence 9999999999999999999998655444333
No 340
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.77 E-value=0.076 Score=56.99 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=83.8
Q ss_pred ccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHhcChHHHH
Q psy11688 48 NQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK----AYYRRAAAYMSLGKFKLAL 122 (546)
Q Consensus 48 ~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~----a~~~lg~~~~~~g~~~eA~ 122 (546)
..+.+.|.+...+..+..|+ ..-.+..|..+...|+.++|++.+++++....+... .++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45678899999999999997 677899999999999999999999999965444333 5888999999999999999
Q ss_pred HHHHHhhccCCCCcchh-cccccchhhhhhh
Q psy11688 123 RDYEAVHKARPNDKDAK-AKFTECNKIVKRM 152 (546)
Q Consensus 123 ~~~~kal~l~P~~~~~~-~~l~~~~~~l~~~ 152 (546)
.++.+..+.+.-+...+ +..+.|+...++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999998766554443 3344455444433
No 341
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=95.75 E-value=0.017 Score=55.99 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=41.6
Q ss_pred cccccccchh------------HhhHHHHHHHhCC-CCCCCCeeeeccccccCCCh--HHHHHHHhhhhhcCCCeEEEEc
Q psy11688 191 FTVCGDIHGQ------------FYDLMNIFELNGL-PSPDNPYLFNGDFVDRGSFS--VECIFTLFGFKLLYPNHFFMAR 255 (546)
Q Consensus 191 ~~viGDihg~------------~~~l~~il~~~~~-~~~~~~~~~lGD~vdrG~~~--~e~l~~l~~l~~~~p~~v~~lr 255 (546)
++.++|+|-. ...+.++++.... .++.+.+++.||+++.|... ..+...+..+ +-.++.++
T Consensus 2 ~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v~ 77 (240)
T cd07402 2 LAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLLP 77 (240)
T ss_pred EEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEeC
Confidence 5567777733 3345666665432 23556799999999987532 1233333333 34689999
Q ss_pred cccccc
Q psy11688 256 GNHESA 261 (546)
Q Consensus 256 GNHE~~ 261 (546)
||||..
T Consensus 78 GNHD~~ 83 (240)
T cd07402 78 GNHDDR 83 (240)
T ss_pred CCCCCH
Confidence 999974
No 342
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=95.74 E-value=0.019 Score=57.15 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=43.8
Q ss_pred ccccccccch------------hHhhHHHHHHHhC-CCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEcc
Q psy11688 190 KFTVCGDIHG------------QFYDLMNIFELNG-LPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARG 256 (546)
Q Consensus 190 ~~~viGDihg------------~~~~l~~il~~~~-~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrG 256 (546)
+++.++|+|= ..+.+.++++.+. ..+..+.+++.||+++.|. .+....+.+.-...+..+++++|
T Consensus 16 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 16 RILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred EEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeCC
Confidence 4788899982 1345666776542 2334567999999999874 22222222222222456999999
Q ss_pred ccccc
Q psy11688 257 NHESA 261 (546)
Q Consensus 257 NHE~~ 261 (546)
|||..
T Consensus 94 NHD~~ 98 (275)
T PRK11148 94 NHDFQ 98 (275)
T ss_pred CCCCh
Confidence 99973
No 343
>KOG4814|consensus
Probab=95.72 E-value=0.1 Score=55.87 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-------AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
..+.+.|...|+.++|..|++.|...+.--|. +....+++.||+.+.+.+.|.++++.|=+.+|.++-.-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 35688899999999999999999999997772 67788999999999999999999999999999999888888
Q ss_pred HHHHHHhcChHHHHHHHHHhhcc
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l 131 (546)
-.+...-+.-++|+.+..+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888899999999998876644
No 344
>PRK10941 hypothetical protein; Provisional
Probab=95.69 E-value=0.12 Score=51.03 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
.-+.++=..+.+.++++.|+.+.+..+.++|+ +.-+.-||.+|.++|.+..|+.+++.-++..|+.+.+-.-+.++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 34466677889999999999999999999996 777889999999999999999999999999999998866655444
No 345
>KOG3081|consensus
Probab=95.60 E-value=0.071 Score=51.41 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhccccc
Q psy11688 69 IYYANRSFAYLKT----EAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTE 144 (546)
Q Consensus 69 ~a~~nla~~~~~~----g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~ 144 (546)
..+..+|.+|.++ +++.+|.-.|+..-+.-|-.+......+.|...+++|++|...++.++..++++++++.++--
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3445566666553 467788888888888666677778888999999999999999999999999999998887776
Q ss_pred chhhhhhh
Q psy11688 145 CNKIVKRM 152 (546)
Q Consensus 145 ~~~~l~~~ 152 (546)
+-...+..
T Consensus 250 ~a~~~Gkd 257 (299)
T KOG3081|consen 250 LALHLGKD 257 (299)
T ss_pred HHHHhCCC
Confidence 66655543
No 346
>KOG3081|consensus
Probab=95.59 E-value=0.2 Score=48.43 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=81.1
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy11688 38 LKAEANEHFK----NQAYNKAIELYSAAIE-VNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAY 112 (546)
Q Consensus 38 ~~~~g~~~~~----~g~~~~Ai~~~~~al~-~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~ 112 (546)
+.++|..+.+ .+++++|.-.|++--+ ..|++......|.|++.+++|++|...++.|+..++++++.+.++-.+-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3445554432 3568999999999887 6678999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHH-HhhccCCCCcc
Q psy11688 113 MSLGKFKLALRDYE-AVHKARPNDKD 137 (546)
Q Consensus 113 ~~~g~~~eA~~~~~-kal~l~P~~~~ 137 (546)
..+|.-+++..-+- +....+|+.+-
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99999877765554 44455666543
No 347
>PHA02546 47 endonuclease subunit; Provisional
Probab=95.58 E-value=0.019 Score=59.04 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=36.1
Q ss_pred hhHHHHHHHhCCCCCCCCeeeeccccccC-CChHHHHHHHhh----hhhcCCCeEEEEccccccc
Q psy11688 202 YDLMNIFELNGLPSPDNPYLFNGDFVDRG-SFSVECIFTLFG----FKLLYPNHFFMARGNHESA 261 (546)
Q Consensus 202 ~~l~~il~~~~~~~~~~~~~~lGD~vdrG-~~~~e~l~~l~~----l~~~~p~~v~~lrGNHE~~ 261 (546)
..+.++++.+... ..+.+++.||++|+. +.+.++..++.. .....+-.|+++.||||..
T Consensus 26 ~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 26 KFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 3445555544322 446799999999985 444444444332 1112345799999999974
No 348
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=95.54 E-value=0.14 Score=46.17 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=28.5
Q ss_pred CCCCeeeeccccccCCChH-HHH-HHHhhhhhc---C-CCeEEEEccccccc
Q psy11688 216 PDNPYLFNGDFVDRGSFSV-ECI-FTLFGFKLL---Y-PNHFFMARGNHESA 261 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~~-e~l-~~l~~l~~~---~-p~~v~~lrGNHE~~ 261 (546)
..+.++++||+++.+.... +.. ..+..++.. . +-.+++++||||..
T Consensus 38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 3467999999999876422 111 222222221 1 24699999999974
No 349
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=95.53 E-value=0.017 Score=56.76 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=44.2
Q ss_pred cccccccchhHhhHHHHHHHhCC--CCCCCCeeeeccccccCCCh-HHHH-------------HHHhhhhhcCCCeEEEE
Q psy11688 191 FTVCGDIHGQFYDLMNIFELNGL--PSPDNPYLFNGDFVDRGSFS-VECI-------------FTLFGFKLLYPNHFFMA 254 (546)
Q Consensus 191 ~~viGDihg~~~~l~~il~~~~~--~~~~~~~~~lGD~vdrG~~~-~e~l-------------~~l~~l~~~~p~~v~~l 254 (546)
++|+||+||.++.+.+.++.... ....+.++..||+-..+..+ .+.+ .++... ...|--++++
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~-~~~p~~t~fi 79 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGE-KKAPILTIFI 79 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCC-ccCCeeEEEE
Confidence 46899999999888765443221 22467899999996544322 2221 222222 2346668999
Q ss_pred ccccccc
Q psy11688 255 RGNHESA 261 (546)
Q Consensus 255 rGNHE~~ 261 (546)
.||||..
T Consensus 80 ~GNHE~~ 86 (262)
T cd00844 80 GGNHEAS 86 (262)
T ss_pred CCCCCCH
Confidence 9999964
No 350
>KOG1585|consensus
Probab=95.52 E-value=0.29 Score=46.68 Aligned_cols=102 Identities=18% Similarity=0.076 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCc
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP---T----AIYYANRSFAYLKTEAIGYALNDASKAIELD-----QTY 101 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~-----p~~ 101 (546)
.+..+...+.++-..++|++|..++.+|++... + +.+|..-|....++..+.++...+++|..+- |+-
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 345566666677778999999999999996433 1 6778888888888999999999999999874 444
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC
Q psy11688 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135 (546)
Q Consensus 102 ~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 135 (546)
.-.-...|-=..+..+.++|++.|++++.+--++
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 4444555555667788999999999998875443
No 351
>KOG3364|consensus
Probab=95.48 E-value=0.094 Score=45.33 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 65 NPTAIYYANRSFAYLKTE---AIGYALNDASKAIE-LDQT-YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 65 ~p~~~a~~nla~~~~~~g---~~~~Al~~~~~al~-l~p~-~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
++..+..+++|.++.... +-++.+..++..++ -.|+ .-+..|.+|..++++++|++|+++.+..++..|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 556777888888887755 45568888888886 5554 346788899999999999999999999999999998876
Q ss_pred cccccch
Q psy11688 140 AKFTECN 146 (546)
Q Consensus 140 ~~l~~~~ 146 (546)
.....+.
T Consensus 109 ~Lk~~ie 115 (149)
T KOG3364|consen 109 ELKETIE 115 (149)
T ss_pred HHHHHHH
Confidence 5444333
No 352
>KOG2471|consensus
Probab=95.43 E-value=0.019 Score=59.45 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH---------hCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIE---------VNP----------TAIYYANRSFAYLKTEAIGYALNDASKAI 95 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~---------~~p----------~~~a~~nla~~~~~~g~~~~Al~~~~~al 95 (546)
-..|.++|.++++.|.|..++.+|.+|++ +.| .....||.|..|+..|+.-.|.++|.+++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 44568899999999999999999999996 123 16899999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHh
Q psy11688 96 ELDQTYTKAYYRRAAAYMSL 115 (546)
Q Consensus 96 ~l~p~~~~a~~~lg~~~~~~ 115 (546)
...-.+|..|.++|.|....
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998754
No 353
>KOG2610|consensus
Probab=95.43 E-value=0.069 Score=52.98 Aligned_cols=121 Identities=14% Similarity=-0.030 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc---HHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIEL-DQTY---TKAYYRRAA 110 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l-~p~~---~~a~~~lg~ 110 (546)
+..-..+..++.+|++-+|-..+++.++-.|. -.++..--.+++-+|+.+.-...++|.+-. +|+. ...+--++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 44455667778888888888888888888884 334444445556677777777777777766 6665 334444667
Q ss_pred HHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhh
Q psy11688 111 AYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKG 156 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~ 156 (546)
++.+.|-|++|.+.-++++++||.+.-+....+-+.+.-.+.+++.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 7778888888888888888888887777777777766666665533
No 354
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=95.42 E-value=0.021 Score=53.31 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=32.5
Q ss_pred CCCCeeeeccccccCCCh--HHHHHHHhhhhhcCC----CeEEEEcccccc
Q psy11688 216 PDNPYLFNGDFVDRGSFS--VECIFTLFGFKLLYP----NHFFMARGNHES 260 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~--~e~l~~l~~l~~~~p----~~v~~lrGNHE~ 260 (546)
..+.++|+||++|.|+.+ .+..+.+..++..++ -.++.+.||||.
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 356799999999999864 235556666554322 368899999996
No 355
>KOG2610|consensus
Probab=95.26 E-value=0.11 Score=51.59 Aligned_cols=103 Identities=14% Similarity=0.031 Sum_probs=88.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy11688 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV-NPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100 (546)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~ 100 (546)
+..++-|.+.-++..--..++-.|+-..-...+++.+.. +|+ ....-.+|.++.+.|-|++|.+..++++++||.
T Consensus 128 klL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 128 KLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF 207 (491)
T ss_pred HHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc
Confidence 445777877888877788889999999999999999887 665 344556788889999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHHh
Q psy11688 101 YTKAYYRRAAAYMSLGKFKLALRDYEAV 128 (546)
Q Consensus 101 ~~~a~~~lg~~~~~~g~~~eA~~~~~ka 128 (546)
+.++...++.++...++++++.+...+.
T Consensus 208 D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 208 DCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999877653
No 356
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=95.24 E-value=0.024 Score=54.10 Aligned_cols=59 Identities=27% Similarity=0.243 Sum_probs=37.0
Q ss_pred hHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHH----HHhhhhhcCCCeEEEEccccccchh
Q psy11688 203 DLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIF----TLFGFKLLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 203 ~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~----~l~~l~~~~p~~v~~lrGNHE~~~~ 263 (546)
.+.++++..... ..+.+++.||+++....+.+.+. .+.+++. .+-.++++.||||....
T Consensus 29 ~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 29 AFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKE-AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred HHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEecCCCCCccc
Confidence 355555554332 34579999999998765544333 3333321 13469999999997654
No 357
>KOG1915|consensus
Probab=95.17 E-value=0.23 Score=51.62 Aligned_cols=96 Identities=16% Similarity=0.051 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLG 116 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g 116 (546)
.|..-|....++.+...|...+-.||-..|.+..+-..-..-.++++++.+...|++-|+-.|.+..+|...|..-..+|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 34444555555566666666666666666655554444455556666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHhhccC
Q psy11688 117 KFKLALRDYEAVHKAR 132 (546)
Q Consensus 117 ~~~eA~~~~~kal~l~ 132 (546)
+.+.|...|+-|+...
T Consensus 486 dtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 486 DTDRARAIFELAISQP 501 (677)
T ss_pred hHHHHHHHHHHHhcCc
Confidence 6666666666666543
No 358
>KOG2053|consensus
Probab=95.16 E-value=0.098 Score=58.10 Aligned_cols=116 Identities=12% Similarity=0.023 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~ 107 (546)
...|+..-+...+|..+++.|++++|..+++..-...+ +...+..+-.||..++++++|...|+++++.+|. -+..+.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~ 115 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYH 115 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHH
Confidence 44555566677789999999999999977655544555 4788899999999999999999999999999999 888888
Q ss_pred HHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 108 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
+=++|.+-+.|.+=.+.--+.-+..|+++-..+....+
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 88999999999775555555556778877655444333
No 359
>KOG0530|consensus
Probab=95.05 E-value=0.83 Score=44.15 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=93.3
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChH-HH
Q psy11688 45 HFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTE-AIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFK-LA 121 (546)
Q Consensus 45 ~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~-eA 121 (546)
+.+...-..|++.-..+|.++| +...|..|-.+...++ +..+-+.+++..++-+|.|...|..+-.+...+|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 3445566889999999999999 6788888877777665 6677889999999999999999999999999999988 78
Q ss_pred HHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 122 LRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 122 ~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
++..++++..+.+|--+|.....+....+.++
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 89999999999999999998888887776654
No 360
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=95.05 E-value=0.053 Score=46.25 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=42.7
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
.||+|.....................-.|++||+++.|..+.+........+......++++.|||
T Consensus 3 ~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 68 (131)
T cd00838 3 ISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNH 68 (131)
T ss_pred eecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCc
Confidence 477777643222211112223334466899999999999988877764444445556699999999
No 361
>KOG1941|consensus
Probab=95.03 E-value=0.068 Score=53.56 Aligned_cols=96 Identities=22% Similarity=0.210 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--------
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNP---T----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY-------- 101 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~-------- 101 (546)
.....|+++...+.+++|++.|++|+...- | -.++..+|..|.+++++++|+-+..+|.++-...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 345588999999999999999999998643 1 5789999999999999999999999999875321
Q ss_pred --HHHHHHHHHHHHHhcChHHHHHHHHHhhccC
Q psy11688 102 --TKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 102 --~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
.-+.+.++.++..+|+.-.|.++.+++.++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1257889999999999999999999998764
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.02 E-value=0.21 Score=40.56 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 88 LNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 88 l~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
+..++++++.+|++..+.+.+|..+...|++++|++.+.++++.+|+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34455555555555555555555555555555555555555555544
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.02 E-value=0.25 Score=38.55 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
.+....++|..++.+.+.++|+..+++|++..++ ..++-.+..+|...|+|++++++.-+-+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999998775 456667778889999999998887665554
No 364
>KOG1915|consensus
Probab=95.00 E-value=0.44 Score=49.61 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=87.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Q psy11688 38 LKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLG 116 (546)
Q Consensus 38 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g 116 (546)
|..-|.---.++++..|...|++|+..+- +..+|...+.+-++.++...|...+++|+.+-|.-...|+..-.+-..+|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 34444445577889999999999999887 48899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhccCCCCc
Q psy11688 117 KFKLALRDYEAVHKARPNDK 136 (546)
Q Consensus 117 ~~~eA~~~~~kal~l~P~~~ 136 (546)
+.+.|.+.|++-++..|+..
T Consensus 156 Ni~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHH
Confidence 99999999999999999744
No 365
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.98 E-value=0.52 Score=48.24 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------
Q psy11688 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-----TAIYYANRSFAYLKTEAIGYALNDASKAIELDQ------ 99 (546)
Q Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-----~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p------ 99 (546)
..+.+..+...+..+.+.|.++.|...+.++...++ .+.+....|......|+..+|+..++..++...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 455677889999999999999999999999998764 367888899999999999999999988887111
Q ss_pred ----------------------------CcHHHHHHHHHHHHHh------cChHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 100 ----------------------------TYTKAYYRRAAAYMSL------GKFKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 100 ----------------------------~~~~a~~~lg~~~~~~------g~~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
...+++..+|.-...+ +..+++++.|.++++++|+...++...+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1134566677777677 888999999999999999999888888877
Q ss_pred hhhhhhhhhhh------hchHHHHHHHHHHHHhhhhcCCc
Q psy11688 146 NKIVKRMQIKG------KLHRKYAYRILMDIKALFMTQDS 179 (546)
Q Consensus 146 ~~~l~~~~~~~------~l~~~~~~~il~~a~eiL~~~p~ 179 (546)
+..+-...... ....+.+..++..+.+.+...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 66554333211 12233444455555555544433
No 366
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.81 E-value=2.2 Score=40.41 Aligned_cols=212 Identities=16% Similarity=0.137 Sum_probs=112.6
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeecccc--ccCCChHHHHHH-HhhhhhcCCCeEEEEccccccchhhhh
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFV--DRGSFSVECIFT-LFGFKLLYPNHFFMARGNHESAYMNQI 266 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~v--drG~~~~e~l~~-l~~l~~~~p~~v~~lrGNHE~~~~~~~ 266 (546)
++..+.|+||....+.++++..... ..+.++..||+. +.|+.-...... +..++ ..-..|+.++||.|...+...
T Consensus 5 kil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~~~v~~~ 82 (226)
T COG2129 5 KILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDPPEVIDV 82 (226)
T ss_pred eEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCChHHHHHH
Confidence 4778999999999999998877544 456799999999 887654433221 23333 123579999999887655332
Q ss_pred hcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCC-----hhhhhccCCC-CCCCCchhhhhhhc
Q psy11688 267 YGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVT-----LEDIRTIDRN-RQPPDEGLMCELLW 340 (546)
Q Consensus 267 ~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~-----~~~i~~~~r~-~~~~~~~~~~dllW 340 (546)
..- .+..+ .+-...+++--||-=||.......+ -++|....+. .....+..---+..
T Consensus 83 l~~-------~~~~v----------~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~H 145 (226)
T COG2129 83 LKN-------AGVNV----------HGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTH 145 (226)
T ss_pred HHh-------ccccc----------ccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCcceEEEec
Confidence 100 00000 0112233433333336652222222 2222221111 00000000000111
Q ss_pred CCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeC
Q psy11688 341 SDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKG 420 (546)
Q Consensus 341 sdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~ 420 (546)
.-|-...-. .+-| -..-|..+++++.++.+-.+.|.||=-...|+..--+ ||+-.|.-.+ .=..|++.+.+
T Consensus 146 aPP~gt~~d--~~~g-~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~----TivVNPG~~~--~g~yA~i~l~~ 216 (226)
T COG2129 146 APPYGTLLD--TPSG-YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGN----TIVVNPGPLG--EGRYALIELEK 216 (226)
T ss_pred CCCCCcccc--CCCC-ccccchHHHHHHHHHhCCceEEEeeecccccccccCC----eEEECCCCcc--CceEEEEEecC
Confidence 112111111 1222 1356999999999999999999998665667755332 6666654322 33567777743
Q ss_pred CCCceeEEEEe
Q psy11688 421 KDMVPHFTTYE 431 (546)
Q Consensus 421 ~~~~~~~~~~~ 431 (546)
..++..+|.
T Consensus 217 --~~Vk~~~~~ 225 (226)
T COG2129 217 --EVVKLEQFS 225 (226)
T ss_pred --cEEEEEEec
Confidence 255655653
No 367
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.76 E-value=0.091 Score=42.64 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhcChHHHHHHHHH
Q psy11688 53 KAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY--TKAYYRRAAAYMSLGKFKLALRDYEA 127 (546)
Q Consensus 53 ~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~--~~a~~~lg~~~~~~g~~~eA~~~~~k 127 (546)
..+..++++++.+|+ ..+.+.+|..++..|++++|++.+-.+++.++++ ..+--.+=.++..+|.-+.....|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 357788999999995 8999999999999999999999999999999876 44555555566666665544444444
No 368
>KOG1070|consensus
Probab=94.76 E-value=0.39 Score=56.00 Aligned_cols=136 Identities=13% Similarity=-0.022 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIE-VNPT--------AIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~p~--------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p 99 (546)
-.+|+.+-.|.+-=....+.++.++|.+..++|+. +++. ..||.|+=.+| |.-+...+.|++|.+..
T Consensus 1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYC- 1527 (1710)
T ss_pred hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhc-
Confidence 46677777887777778889999999999999987 5551 55666666555 45667778888888876
Q ss_pred CcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhc
Q psy11688 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMT 176 (546)
Q Consensus 100 ~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~ 176 (546)
+-...|..|..+|...+++++|.+.|+..++.--+...+|..++.......+. +.+..++.+|.+.+.+
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~--------~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA--------EAARELLKRALKSLPK 1596 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH--------HHHHHHHHHHHhhcch
Confidence 33567888899999999999999999999988777777887777766554433 4455666666666655
No 369
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=94.71 E-value=0.055 Score=52.40 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=27.9
Q ss_pred CCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEcccccc
Q psy11688 216 PDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHES 260 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~ 260 (546)
+.|.+++.||+.+++... +....+..++.. |..++++.||||.
T Consensus 41 ~~D~viiaGDl~~~~~~~-~~~~~l~~l~~l-~~~v~~V~GNHD~ 83 (232)
T cd07393 41 PEDIVLIPGDISWAMKLE-EAKLDLAWIDAL-PGTKVLLKGNHDY 83 (232)
T ss_pred CCCEEEEcCCCccCCChH-HHHHHHHHHHhC-CCCeEEEeCCccc
Confidence 567799999999877533 222222223322 3348999999997
No 370
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.55 E-value=0.061 Score=50.12 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=43.6
Q ss_pred ccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHH-HHHhhhhhcC---------------------CCeE
Q psy11688 194 CGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECI-FTLFGFKLLY---------------------PNHF 251 (546)
Q Consensus 194 iGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l-~~l~~l~~~~---------------------p~~v 251 (546)
.-|++++-.-|.++++..-+.-..+.++||||++|.|--+-+-. ..+......+ .-.+
T Consensus 22 rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (193)
T cd08164 22 RLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPL 101 (193)
T ss_pred eehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceE
Confidence 34556676777888877655555677999999999875333222 2333333322 1357
Q ss_pred EEEcccccc
Q psy11688 252 FMARGNHES 260 (546)
Q Consensus 252 ~~lrGNHE~ 260 (546)
+.|+||||.
T Consensus 102 i~V~GNHDI 110 (193)
T cd08164 102 INIAGNHDV 110 (193)
T ss_pred EEECCcccC
Confidence 899999997
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.1 Score=50.83 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
.....|+=.+++..++++.|+.+.++.+.++|+++.-+--+|.+|.++|.+.-|+++++..++..|+++.+..
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4566777788899999999999999999999999999999999999999999999999999999999887653
No 372
>KOG1586|consensus
Probab=94.36 E-value=0.62 Score=44.27 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=74.2
Q ss_pred HHHHHHHHc-cCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-------H
Q psy11688 40 AEANEHFKN-QAYNKAIELYSAAIEVNPT-------AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK-------A 104 (546)
Q Consensus 40 ~~g~~~~~~-g~~~~Ai~~~~~al~~~p~-------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~-------a 104 (546)
..|..|-.. .++++||.+|++|-+-... ...+..-|..-..+++|.+|+..|++..+..-+|.- .
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 444444433 7889999999999775441 244555566667789999999999998877655532 2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchh
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 139 (546)
.+.-|.|++...+.=.|...+++..+++|.....+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 45568999998999899999999999999866543
No 373
>KOG4151|consensus
Probab=94.34 E-value=0.1 Score=57.29 Aligned_cols=114 Identities=32% Similarity=0.456 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKT--EAIGYALNDASKAIELDQTYTKA 104 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----~~a~~nla~~~~~~--g~~~~Al~~~~~al~l~p~~~~a 104 (546)
-..+......|+.++++++|.+|.-.|..++.+-|. +....+.+.|++++ ++|.+++..++-|+...|...++
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 345667788999999999999999999999999992 67788999998874 69999999999999999999999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccc
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~ 145 (546)
.+.++.+|..++..+-|++...-....+|.+..+.....+.
T Consensus 130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 99999999999999999999888888999987665533333
No 374
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=94.24 E-value=0.067 Score=48.03 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=37.2
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
..|+|+.. ..+.++++.... .+..+++||++++|..+. ++... .++..+|||
T Consensus 5 isD~H~~~--~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~--------~~~~~--~~~~V~GNh 56 (155)
T cd00841 5 ISDTHGSL--ELLEKALELFGD--VDLIIHAGDVLYPGPLNE--------LELKA--PVIAVRGNC 56 (155)
T ss_pred EecCCCCH--HHHHHHHHHhcC--CCEEEECCccccccccch--------hhcCC--cEEEEeCCC
Confidence 46899884 446666665433 467999999999998655 22233 489999999
No 375
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.11 E-value=0.98 Score=41.68 Aligned_cols=97 Identities=15% Similarity=-0.025 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHH----
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQT--YTK---- 103 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~--~~~---- 103 (546)
-..++..+|..|.+.|+.++|++.|.++.+-... ...+.++-.+.+..+++..+.....+|-.+-.. +.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3467889999999999999999999998775442 577888888899999999999999888866432 222
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhhc
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYEAVHK 130 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~kal~ 130 (546)
.-...|..+...++|.+|-+.|-.+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 233457788889999999988876653
No 376
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=94.08 E-value=0.068 Score=56.20 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCCCeeeeccccccCCChHHHH----HHHhhhhhcCCCeEEEEccccccch
Q psy11688 216 PDNPYLFNGDFVDRGSFSVECI----FTLFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~~e~l----~~l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
..+.+++.||++|++..+.+.. .++..++.. +-.++++.||||...
T Consensus 39 ~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~-~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 39 QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQT-GCQLVVLAGNHDSVA 88 (407)
T ss_pred CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhc-CCcEEEEcCCCCChh
Confidence 4567999999999986655433 233344422 346999999999753
No 377
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=94.05 E-value=0.1 Score=51.95 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=46.8
Q ss_pred cccccccchh------HhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhh--cCCCeEEEEccccccch
Q psy11688 191 FTVCGDIHGQ------FYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKL--LYPNHFFMARGNHESAY 262 (546)
Q Consensus 191 ~~viGDihg~------~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~--~~p~~v~~lrGNHE~~~ 262 (546)
++.+.|+|-. .+.+..+++.+... ..|.+++.||+.+.|.. +....+..+.. ..|..+++++||||.+.
T Consensus 3 i~~isD~H~~~~~~~~~~~~~~~~~~i~~~-~~D~~v~tGDl~~~~~~--~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 3 IAHISDLHLGALGVDSEELLEALLAAIEQL-KPDLLVVTGDLTNDGEP--EEYRRLKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred EEEEecCcccccccchHHHHHHHHHHHhcC-CCCEEEEccCcCCCCCH--HHHHHHHHHHhhccCCCceEeeCCCCcCCc
Confidence 4566777754 33455556666544 34789999999999632 22222222222 55778999999999887
Q ss_pred hhhh
Q psy11688 263 MNQI 266 (546)
Q Consensus 263 ~~~~ 266 (546)
.+..
T Consensus 80 ~~~~ 83 (301)
T COG1409 80 VNGE 83 (301)
T ss_pred hHHH
Confidence 6543
No 378
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.04 E-value=1 Score=40.43 Aligned_cols=86 Identities=15% Similarity=-0.004 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
+-...+.+......+.++.+++...+...-.+.|+ ...-..-|..++..|++.+|+..++.+.+-.|..+.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34566777788888888888888888777778885 77777788888888888888888888888888888877788888
Q ss_pred HHHhcCh
Q psy11688 112 YMSLGKF 118 (546)
Q Consensus 112 ~~~~g~~ 118 (546)
+..+++.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 8888775
No 379
>KOG3364|consensus
Probab=94.03 E-value=0.61 Score=40.42 Aligned_cols=72 Identities=8% Similarity=0.056 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 37 KLKAEANEHFKNQ---AYNKAIELYSAAIE-VNPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 37 ~~~~~g~~~~~~g---~~~~Ai~~~~~al~-~~p~--~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
..++.|-++.+.. +.++-|..++..++ ..|. -...+.+|..+.++++|++|+++.+..++.+|+|..+.-..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4466666666544 45678899999997 5663 67888899999999999999999999999999999875543
No 380
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=94.00 E-value=0.091 Score=54.99 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=35.3
Q ss_pred ccccccccch------------hHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHH
Q psy11688 190 KFTVCGDIHG------------QFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTL 240 (546)
Q Consensus 190 ~~~viGDihg------------~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l 240 (546)
++..++|+|- .+..+.++++.+... ..|.+++.||++|++.-|.+++..+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~ 66 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQV 66 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHH
Confidence 3666777773 244566777766433 4677999999999999888777543
No 381
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.82 E-value=0.14 Score=34.33 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
.++.++|.+|..+|++++|++.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566666666666666666666666654
No 382
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.77 E-value=0.56 Score=44.69 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=68.3
Q ss_pred HHHHccCHHHHHHHHHHHHHh------CCC--HHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------cH
Q psy11688 44 EHFKNQAYNKAIELYSAAIEV------NPT--AIYYANRSFAYLKTEAIG-------YALNDASKAIELDQT------YT 102 (546)
Q Consensus 44 ~~~~~g~~~~Ai~~~~~al~~------~p~--~~a~~nla~~~~~~g~~~-------~Al~~~~~al~l~p~------~~ 102 (546)
.+-....+++|++.|.-|+-. +|. +..+..+|-+|..+++.+ .|+..|.+|++.... ..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 444556889999999988753 222 677888888888888855 466666666655422 35
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 103 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
...+.+|.+..++|++++|.++|.+++...-
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 6788999999999999999999999997543
No 383
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.61 E-value=0.14 Score=49.01 Aligned_cols=98 Identities=19% Similarity=0.164 Sum_probs=57.3
Q ss_pred cccccccccchhHhhHH----------------HHHHHhCCCCCCCCeeeeccccccCCC-----hHHHHHHHhhhhhcC
Q psy11688 189 AKFTVCGDIHGQFYDLM----------------NIFELNGLPSPDNPYLFNGDFVDRGSF-----SVECIFTLFGFKLLY 247 (546)
Q Consensus 189 ~~~~viGDihg~~~~l~----------------~il~~~~~~~~~~~~~~lGD~vdrG~~-----~~e~l~~l~~l~~~~ 247 (546)
.+..++.|+|=-++... +.+...-.....+.++.+||.-.-.+. ..++..++..++..
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 35788999995443322 233221112234579999998654433 34454455444432
Q ss_pred CCeEEEEccccccchhhhhhcchhhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCc
Q psy11688 248 PNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGL 309 (546)
Q Consensus 248 p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi 309 (546)
.+++++||||...-.-..++.-+ + ++.. .++ +++++||--
T Consensus 99 --evi~i~GNHD~~i~~~~~~~~v~---------------v---~~~~-~i~-~~~~~HGh~ 138 (235)
T COG1407 99 --EVIIIRGNHDNGIEEILPGFNVE---------------V---VDEL-EIG-GLLFRHGHK 138 (235)
T ss_pred --cEEEEeccCCCccccccccCCce---------------e---eeeE-Eec-CEEEEeCCC
Confidence 49999999998665555544211 1 2222 244 899999986
No 384
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.58 E-value=1.4 Score=44.92 Aligned_cols=169 Identities=17% Similarity=0.078 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSF--AYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~--~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
.....++...-.|+|++|.+-|+.-+. +|.-...-.+|. .-..+|..+.|.++.+++-+.-|.-++++...=.....
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~ 200 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA 200 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence 445577888889999999999987664 775333333333 33568999999999999999999999999888888899
Q ss_pred hcChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccc
Q psy11688 115 LGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVC 194 (546)
Q Consensus 115 ~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~vi 194 (546)
.|+++.|++..+...+..--....-.....++...+. ...++ .+-....+.+.+.++-.|.++....-.+..++.-
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA---~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA---MSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH---HHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 9999999999876654321111111111111110000 01111 1123344556666777777665443334446666
Q ss_pred cccchhHhhHHHHHHH
Q psy11688 195 GDIHGQFYDLMNIFEL 210 (546)
Q Consensus 195 GDihg~~~~l~~il~~ 210 (546)
|++...-.-|+.+.+.
T Consensus 277 ~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 277 GNLRKGSKILETAWKA 292 (531)
T ss_pred cchhhhhhHHHHHHhc
Confidence 7776666666666664
No 385
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.52 E-value=0.11 Score=48.97 Aligned_cols=60 Identities=22% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy11688 43 NEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT 102 (546)
Q Consensus 43 ~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~ 102 (546)
....+.++.+.|.+.|.+|+++.|. ..-|+.+|....+.|+.+.|.+.|++.+++||++-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999996 78899999999999999999999999999999764
No 386
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.43 Score=46.95 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhh
Q psy11688 69 IYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148 (546)
Q Consensus 69 ~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~ 148 (546)
..-+.-+......+++.+|...+..++..+|++.++-..++.||...|+.+.|...+.. .|.+.......+ +...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~-l~a~ 209 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG-LQAQ 209 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH-HHHH
Confidence 33445566777899999999999999999999999999999999999999998877754 343333222222 1111
Q ss_pred hhhhhhhhhchHHHHHHHHHHHHhhhhcCCcccccccccccccccccccchhHhhHHHHHHH
Q psy11688 149 VKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFEL 210 (546)
Q Consensus 149 l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~ 210 (546)
+.-.......++ .......+...|.-..+....+..+...|+...+++.|..++++
T Consensus 210 i~ll~qaa~~~~------~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 210 IELLEQAAATPE------IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHhcCCC------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222211111111 12334456667776666666566678889999999999988886
No 387
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.38 E-value=0.82 Score=46.77 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC-------------------------C-------HHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEV---NP-------------------------T-------AIYYANRSFAY 78 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p-------------------------~-------~~a~~nla~~~ 78 (546)
.+....+.+..++.+|+-.+|+...+..+.. .+ + +.++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 3556688899999999999999998888871 00 0 45566666666
Q ss_pred HHc------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCh-----------------HHHHHHHHHhhccCCC
Q psy11688 79 LKT------EAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKF-----------------KLALRDYEAVHKARPN 134 (546)
Q Consensus 79 ~~~------g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~-----------------~eA~~~~~kal~l~P~ 134 (546)
..+ +..+++++.|.+|++++|++.++|+..|..+..+-+. ..|+..|-+++...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 8888999999999999999999999999888765222 3488888888888876
No 388
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.31 E-value=0.96 Score=45.09 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHH
Q psy11688 35 AEKLKAEANEHFK-NQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT---KAYYRRA 109 (546)
Q Consensus 35 a~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~---~a~~~lg 109 (546)
.+.|...|..-+. .++.+.|...|+.+++..|+ ...|.....-+..+++.+.|...|++++..-|... ..|-...
T Consensus 35 ~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i 114 (280)
T PF05843_consen 35 YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFI 114 (280)
T ss_dssp THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3556667777666 56777799999999999995 78888888899999999999999999998877655 4566677
Q ss_pred HHHHHhcChHHHHHHHHHhhccCCCCcch
Q psy11688 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138 (546)
Q Consensus 110 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~ 138 (546)
.--...|+.+...+.++++.+..|++...
T Consensus 115 ~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 115 EFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 77788899999999999999998885543
No 389
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=93.23 E-value=0.11 Score=45.86 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhh
Q psy11688 216 PDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMN 264 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~ 264 (546)
+.|.+++|||+.-.-.+..+....+.+| |+.+++++||||.---.
T Consensus 45 p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~ 89 (186)
T COG4186 45 PDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPM 89 (186)
T ss_pred ccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCccc
Confidence 4567999999987666666666666555 58899999999975433
No 390
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.16 E-value=0.19 Score=45.04 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=81.0
Q ss_pred ccccccchhHhhHHHHHHHh-CCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcch
Q psy11688 192 TVCGDIHGQFYDLMNIFELN-GLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFE 270 (546)
Q Consensus 192 ~viGDihg~~~~l~~il~~~-~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~ 270 (546)
.++||+||+++.+.+-++.. ....+-+.++++||+..-.....+.-.++.. ....|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g-~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDG-SKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcC-CccCCCCEEEECCCCC-----------
Confidence 36899999999987777653 2334567899999998766665444444443 4566788999999998
Q ss_pred hhhhhhchHHHHHHHHHhhccccceeeecceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCCCCCCC
Q psy11688 271 GEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRA 350 (546)
Q Consensus 271 ~e~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~ 350 (546)
+-.||++|.=+ .. |.+..+. +.+
T Consensus 69 ----------------------------~~DILlTh~wP-~g-------i~~~~~~-------------~~~-------- 91 (150)
T cd07380 69 ----------------------------GVDILLTSEWP-KG-------ISKLSKV-------------PFE-------- 91 (150)
T ss_pred ----------------------------CCCEEECCCCc-hh-------hhhhCCC-------------ccc--------
Confidence 44799988765 10 1100000 000
Q ss_pred CCCCCCeeeeCHHHHHHHHHhcCCcEEEEecccc
Q psy11688 351 PSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVK 384 (546)
Q Consensus 351 ~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~ 384 (546)
+.+..-|...+.++++...-++.+-||.-+
T Consensus 92 ----~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 92 ----ETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred ----ccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 011234778999999999999999999754
No 391
>KOG3662|consensus
Probab=93.16 E-value=0.21 Score=51.53 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=44.6
Q ss_pred hhHhhHHHHHHHhCCCCCCCCeeeeccccccCCCh--HHHHHHHhhhhhcCCC----eEEEEcccccc
Q psy11688 199 GQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFS--VECIFTLFGFKLLYPN----HFFMARGNHES 260 (546)
Q Consensus 199 g~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~--~e~l~~l~~l~~~~p~----~v~~lrGNHE~ 260 (546)
+.-..+.+.++..-+.-..+..+||||++|-|... .|--....+++..+|. .++.+.||||-
T Consensus 76 ~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 76 GNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred hhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 34444667777666666677899999999988764 3444456666666655 69999999996
No 392
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=93.15 E-value=0.08 Score=53.08 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=40.4
Q ss_pred ccccccccchhHhhHHHHHHHhCC-CCCCCCeeeeccccccCCCh-----HHHHHHHhhhhhcCCCeEEEEccccccchh
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGL-PSPDNPYLFNGDFVDRGSFS-----VECIFTLFGFKLLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~-~~~~~~~~~lGD~vdrG~~~-----~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~ 263 (546)
+++++||.|.....-.++++.+.. ..+.+-++++||+++.+... ......+..+.... .++.++||||....
T Consensus 6 ~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~GNHD~~~~ 83 (294)
T cd00839 6 KFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYV--PYMVTPGNHEADYN 83 (294)
T ss_pred EEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcC--CcEEcCcccccccC
Confidence 588999998522222222222211 23456799999999654332 22223333332223 48899999998643
No 393
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=93.15 E-value=0.16 Score=49.87 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHHhcCCcEEEEeccccccCceEeCC
Q psy11688 365 TKAFLERNKLEYIIRSHEVKQDGYEVAHD 393 (546)
Q Consensus 365 ~~~fl~~~~~~~iir~H~~~~~G~~~~~~ 393 (546)
+.+.+++.++++++-||.-...+.+..|-
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~h~ 218 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPVHY 218 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceeeee
Confidence 77788999999999999988777566553
No 394
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=93.08 E-value=0.12 Score=49.48 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=28.4
Q ss_pred cceeeccccCCCCCchH-HHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFSV-ECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~-e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
+-.++.||++|.+..+. ++..++-.++..+ .++.+.|||
T Consensus 34 d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~--~v~~v~GNH 73 (223)
T cd07385 34 DLVVLTGDLVDGSVDVLELLLELLKKLKAPL--GVYAVLGNH 73 (223)
T ss_pred CEEEEcCcccCCcchhhHHHHHHHhccCCCC--CEEEECCCc
Confidence 46789999999998775 4444444443334 499999999
No 395
>KOG1070|consensus
Probab=93.00 E-value=1.2 Score=52.34 Aligned_cols=121 Identities=12% Similarity=-0.035 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
.++.+.|...-|....-|.-+.-.+.|++|.+...-...|..+...|.+.+++++|.+.++..++.--+....|...|..
T Consensus 1494 eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1494 EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 34444454444445555666777788999988665577888999999999999999999999998888888899999999
Q ss_pred HHHhcChHHHHHHHHHhhccCCC--Ccchhcccccchhhhhhh
Q psy11688 112 YMSLGKFKLALRDYEAVHKARPN--DKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~l~~~~~~l~~~ 152 (546)
+++..+-++|...+++|++--|. ..++....+++..+.+..
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999887 444555555554444433
No 396
>KOG1585|consensus
Probab=92.97 E-value=0.93 Score=43.39 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEV-----NPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTY------TKA 104 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~------~~a 104 (546)
++-..|..+-....+.++..+|++|..+ .|+ +..-..+|.-.++..+.++|++.|++++.+--+. .+.
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3333444444455566666666666554 222 2333344444445556666666666665442211 122
Q ss_pred HHHHHHHHHHhcChHHHHHHHHH
Q psy11688 105 YYRRAAAYMSLGKFKLALRDYEA 127 (546)
Q Consensus 105 ~~~lg~~~~~~g~~~eA~~~~~k 127 (546)
+-..+.++.++.+|++|-..+.|
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHH
Confidence 33345555556666555444443
No 397
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=92.94 E-value=0.18 Score=50.18 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=46.6
Q ss_pred ccccccccccchhHhh--HHHHHHHhCCCCCCCCeeeecccccc--CCChHHHHHHHhhhhhcCCCeEEEEccccccchh
Q psy11688 188 EAKFTVCGDIHGQFYD--LMNIFELNGLPSPDNPYLFNGDFVDR--GSFSVECIFTLFGFKLLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 188 ~~~~~viGDihg~~~~--l~~il~~~~~~~~~~~~~~lGD~vdr--G~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~ 263 (546)
+.+++.+.|+|-..-. ..+.+...... ..|.+++.||++|+ -+....++..+..|+ .|-.++++.||||...-
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~-~~DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANE-LPDLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGVD 120 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhc-CCCEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEecccccccc
Confidence 3458889999965433 22222222212 12789999999995 444455555666665 45679999999986543
No 398
>KOG2396|consensus
Probab=92.91 E-value=0.7 Score=48.50 Aligned_cols=90 Identities=9% Similarity=-0.000 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC-hHHHHHHHHHhhcc
Q psy11688 54 AIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK-FKLALRDYEAVHKA 131 (546)
Q Consensus 54 Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~-~~eA~~~~~kal~l 131 (546)
-...|..|...-+ |...|.+...-..+.+.+.+--..|.+++...|+++..|..-|.=.+..+. .+.|.+.+.++|+.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3467888888777 788888887777777779999999999999999999999999888888777 89999999999999
Q ss_pred CCCCcchhcccc
Q psy11688 132 RPNDKDAKAKFT 143 (546)
Q Consensus 132 ~P~~~~~~~~l~ 143 (546)
+|+++..+...-
T Consensus 170 npdsp~Lw~eyf 181 (568)
T KOG2396|consen 170 NPDSPKLWKEYF 181 (568)
T ss_pred CCCChHHHHHHH
Confidence 999998775443
No 399
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=92.88 E-value=0.12 Score=50.47 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCCCeeeeccccccCCC------------h----HHHHHHHhhhhhcCCCeEEEEccccccch
Q psy11688 216 PDNPYLFNGDFVDRGSF------------S----VECIFTLFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 216 ~~~~~~~lGD~vdrG~~------------~----~e~l~~l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
..+.++++||++|+... . .++..++.++. ..-.|+++.||||...
T Consensus 35 ~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 35 RVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAVR 95 (243)
T ss_pred CccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCccc
Confidence 34689999999997320 0 12333444443 2346999999999753
No 400
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=92.83 E-value=0.25 Score=47.39 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=41.4
Q ss_pred hhCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 461 AQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 461 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
...|+|+++. .+..+.+......-+..|.+||++++|...-|+..++-.+.- .+..++.++|||
T Consensus 9 ~iSDiHgn~~--~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNh 72 (224)
T cd07388 9 ATSNPKGDLE--ALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQ 72 (224)
T ss_pred EEEecCCCHH--HHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCC
Confidence 3578999853 344444432222235789999999999766666655555532 223489999999
No 401
>KOG1550|consensus
Probab=92.75 E-value=1.5 Score=48.22 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=80.2
Q ss_pred HHHHHHHHHHc----c-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy11688 38 LKAEANEHFKN----Q-AYNKAIELYSAAIEVNPTAIYYANRSFAYLKTE---AIGYALNDASKAIELDQTYTKAYYRRA 109 (546)
Q Consensus 38 ~~~~g~~~~~~----g-~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g---~~~~Al~~~~~al~l~p~~~~a~~~lg 109 (546)
....|.+|.+. . +++.|..+|.+|-+.. ++.+.+.+|.++..-. ++..|.++|..|.+.. ++.|.+++|
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la 367 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLA 367 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHH
Confidence 34466667663 2 7889999999998754 4677888899987765 5789999999888774 789999999
Q ss_pred HHHHH----hcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 110 AAYMS----LGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 110 ~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
.||.. .-+.+.|..+|.++-+.+ ++.+.+.++..+.
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~ 407 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE 407 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence 99985 456889999999999887 3444444444443
No 402
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.68 E-value=0.4 Score=55.23 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=79.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 42 ANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTE-------AIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 42 g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g-------~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
.+++...+.|++|+..|++.-.--|. .+|.+..|.+.+..- .+++|+.-|++.- -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 45678889999999999999999983 789999999887642 3555555555432 23566677999999
Q ss_pred HHHHhcChHHHHHHHHHhhccCCCCcchhcc
Q psy11688 111 AYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~ 141 (546)
+|.++++|+|-+++|.-|++..|+.+..-..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 9999999999999999999999998886543
No 403
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.87 Score=48.74 Aligned_cols=113 Identities=15% Similarity=-0.085 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCcHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA-SKAIELDQTYTKAYY 106 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~-~~al~l~p~~~~a~~ 106 (546)
..+|+..-+.+ +...+...++...|+.....++..+|+ +.++.++|.+....|....|+... +.+....|++.....
T Consensus 62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 44555544545 666777788888999999999999995 899999999988877766666555 449999999988766
Q ss_pred HH------HHHHHHhcChHHHHHHHHHhhccCCCCcchhccc
Q psy11688 107 RR------AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKF 142 (546)
Q Consensus 107 ~l------g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l 142 (546)
.+ |.....+++..+|....+++..+.|+++.+...+
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 66 8888888999999999999999999986655433
No 404
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.64 E-value=2.1 Score=44.57 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCC-------------------------------------------
Q psy11688 32 KERAEKLKAEANEHFKNQA-YNKAIELYSAAIEVNPT------------------------------------------- 67 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~~g~-~~~Ai~~~~~al~~~p~------------------------------------------- 67 (546)
...+..+..-|..+++.|+ -++|++.++.+++..|.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 3455666777778888887 67788877777765551
Q ss_pred ----HHHHHHH--HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy11688 68 ----AIYYANR--SFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127 (546)
Q Consensus 68 ----~~a~~nl--a~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~k 127 (546)
.+.-..+ |.-++..|+|.++.-+.....+++| .+.+|..+|.|+....+|+||-.++.+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 1111112 2334678999999999999999999 999999999999999999999988864
No 405
>KOG0529|consensus
Probab=92.59 E-value=1.3 Score=45.60 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=92.7
Q ss_pred ccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC----hHH
Q psy11688 48 NQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTE--AIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK----FKL 120 (546)
Q Consensus 48 ~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g--~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~----~~e 120 (546)
+...++-+.+...|++.+|+ ..+|+-|..++.+.+ ++..-++.++++++.||.|..+|..+-.+...... ..+
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 33567778888999999997 799999999998765 36788999999999999999988777666554433 466
Q ss_pred HHHHHHHhhccCCCCcchhcccccchhhhhhhh-hhhhchHHHHHHHHHHHHhhhhcCC
Q psy11688 121 ALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ-IKGKLHRKYAYRILMDIKALFMTQD 178 (546)
Q Consensus 121 A~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~-~~~~l~~~~~~~il~~a~eiL~~~p 178 (546)
-++...+++.-++.|-.+|.....+...+-..+ .+..+++.....=++....++-.+|
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp 226 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDP 226 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCc
Confidence 788888899889998888877666554332222 2324455544444455545444444
No 406
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.39 E-value=1.8 Score=44.71 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=97.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCcHHHHHHHHH
Q psy11688 41 EANEHFKNQAYNKAIELYSAAIEVNP------TAIYYANRSFAYLK---TEAIGYALNDASKA-IELDQTYTKAYYRRAA 110 (546)
Q Consensus 41 ~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~a~~nla~~~~~---~g~~~~Al~~~~~a-l~l~p~~~~a~~~lg~ 110 (546)
.=..|-..++|+.-++..+..-.+ | ....-+.+|.++.+ .|+.++|++.+..+ ...++.+++.+..+|.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 333455667777777766554433 3 26677888999989 99999999999994 4556788999999999
Q ss_pred HHHHh---------cChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHH------hhhh
Q psy11688 111 AYMSL---------GKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIK------ALFM 175 (546)
Q Consensus 111 ~~~~~---------g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~------eiL~ 175 (546)
+|-.+ ...++|+.+|.++.+++|+.-. --+++.+....+... .......++..... ..+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~----~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDF----ETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcc----cchHHHHHHHHHHHHHHHhhcccc
Confidence 98653 2468899999999999975211 122222222222110 11112222221111 1223
Q ss_pred cCCcccccccccccccccccccchhHhhHHHHHHH
Q psy11688 176 TQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFEL 210 (546)
Q Consensus 176 ~~p~~~~i~~~~~~~~~viGDihg~~~~l~~il~~ 210 (546)
+..+...+. ...+..+..||..+....+.++++.
T Consensus 301 ~~~dYWd~A-Tl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVA-TLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHH-HHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333322221 1223356678888888888888765
No 407
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=91.96 E-value=0.21 Score=43.71 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=33.5
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchH--HHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSV--ECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~--e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-+|+|+.+. . .......-.++.||++++|..+. +.+.++..++ .| .+++.+|||
T Consensus 5 isD~H~~~~------~---~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNH 60 (135)
T cd07379 5 ISDTHSRHR------T---ISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNH 60 (135)
T ss_pred EeCCCCCCC------c---CcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCC
Confidence 468898853 1 12233456899999999997543 2333343332 23 367899999
No 408
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.92 E-value=0.37 Score=32.12 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEV 64 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 64 (546)
+..+.++|..+...|++++|..++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999875
No 409
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=91.84 E-value=0.26 Score=43.94 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=32.4
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
.+|+|.. ...+.++++.. . .....+++||++|+ .|++..+-.+ .++.++|||
T Consensus 6 ~sD~H~~--~~~~~~~~~~~-~-~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNH 57 (156)
T PF12850_consen 6 ISDLHGN--LDALEAVLEYI-N-EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNH 57 (156)
T ss_dssp EE--TTT--HHHHHHHHHHH-T-TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CC
T ss_pred EeCCCCC--hhHHHHHHHHh-c-CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCc
Confidence 5788887 33456666655 2 24567999999994 6777666444 499999999
No 410
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.68 E-value=1 Score=40.55 Aligned_cols=85 Identities=14% Similarity=-0.030 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~ 147 (546)
...+.....+-+..++.+++...+...--+.|+.++.-..-|..+...|++.+|++.++.+.+-.|..+.+.-.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34566667777788899999999999999999999999999999999999999999999999999999988888899987
Q ss_pred hhhhh
Q psy11688 148 IVKRM 152 (546)
Q Consensus 148 ~l~~~ 152 (546)
..+..
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 76654
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.45 E-value=1 Score=36.66 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-----C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 45 HFKNQAYNKAIELYSAAIEVNP-----T-----AIYYANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 45 ~~~~g~~~~Ai~~~~~al~~~p-----~-----~~a~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
..+.|+|.+|++.+.+...... . ..+..++|.++...|++++|++.++.|+++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456666666665555554322 0 234444555555555555555555555544
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.41 E-value=0.7 Score=37.71 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 77 AYLKTEAIGYALNDASKAIELDQT---------YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 77 ~~~~~g~~~~Al~~~~~al~l~p~---------~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
-.++.++|.+|++.+.+....... ...+..++|.++...|++++|++.+++|+++..+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 346789999998888887755321 2467888999999999999999999999987654
No 413
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=91.37 E-value=0.35 Score=44.33 Aligned_cols=42 Identities=14% Similarity=-0.095 Sum_probs=26.2
Q ss_pred CcceeeccccCCCCCchH--HHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRGSFSV--ECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg~~~~--e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-...|++||++|....+. +....-+......+..+++++|||
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNH 85 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNH 85 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccC
Confidence 467899999998765332 222210122223455699999999
No 414
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=91.09 E-value=0.4 Score=46.34 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=36.2
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-+|||+++.... .+.++. ..| +..++.||+++. +.+++..|-.+ .+| ++.++|||
T Consensus 6 isDiHg~~~~~~-~~~l~~--~~p-D~Vl~~GDi~~~---~~~~~~~l~~l--~~p--~~~V~GNH 60 (238)
T cd07397 6 VGDVHGQWDLED-IKALHL--LQP-DLVLFVGDFGNE---SVQLVRAISSL--PLP--KAVILGNH 60 (238)
T ss_pred EecCCCCchHHH-HHHHhc--cCC-CEEEECCCCCcC---hHHHHHHHHhC--CCC--eEEEcCCC
Confidence 479998865321 223322 223 578999999874 56777666544 355 88999999
No 415
>KOG2047|consensus
Probab=90.99 E-value=2.1 Score=46.35 Aligned_cols=104 Identities=14% Similarity=0.212 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIE-VNPT------AIYYANRSFAYLKTEAIGYALNDASKAIELDQT- 100 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~p~------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~- 100 (546)
..+|.+++.|...-. +..|+..+-+..|++|++ .+|. ...|...|..|-..|+.+.|...+++|++.+-.
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 456666666654443 347889999999999987 6782 688999999999999999999999999988743
Q ss_pred ---cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCC
Q psy11688 101 ---YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135 (546)
Q Consensus 101 ---~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 135 (546)
....|..-|..-....+++.|.+..++|... |.+
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN 457 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence 3578999999999999999999999999876 443
No 416
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=90.79 E-value=0.66 Score=41.83 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=26.0
Q ss_pred cceeeccccCCCCCchH-----HHHHHHHHhcccC-CCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFSV-----ECIFTLFGFKLLY-PNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~-----e~~~~l~~~~~~~-~~~~~~~rgnh 527 (546)
...|++||++|.|..+. +.+..+..+.... +..+++++|||
T Consensus 40 d~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNH 86 (156)
T cd08165 40 DVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNH 86 (156)
T ss_pred CEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCC
Confidence 46899999999987532 2222233322112 23599999999
No 417
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=90.69 E-value=0.45 Score=43.84 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=35.1
Q ss_pred hCcchhhhHHHHHHHHHHhcCCCCCcceeeccccCCCCCch-HHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFS-VECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~-~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
.+|+|+.+.. +.. .......-+-.|..||++++|..+ .+.+..|.. .+..+++++|||
T Consensus 4 ~sD~H~~~~~--~~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNH 62 (188)
T cd07392 4 ISDIHGDVEK--LEA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNC 62 (188)
T ss_pred EEecCCCHHH--HHH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 4689987532 322 111222335689999999999863 333333322 233489999999
No 418
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=1.7 Score=42.53 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 38 LKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 38 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
..+.=..+...++++.|...-++.+.++|+ +.-..-+|.+|.++|.+.-|+++++..++.-|+.+.+-..++..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555778899999999999999999995 88899999999999999999999999999999998876655444
No 419
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.66 E-value=0.42 Score=31.86 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=12.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
|..+|.+-+..++|++|+++|++++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 420
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=90.58 E-value=0.3 Score=47.76 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=41.0
Q ss_pred cccccccchhH---------hhHHHHHHHhCCCCCCCCeeeeccccccCCChH-----HHHHHHhhhhhcCCCeEEEEcc
Q psy11688 191 FTVCGDIHGQF---------YDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSV-----ECIFTLFGFKLLYPNHFFMARG 256 (546)
Q Consensus 191 ~~viGDihg~~---------~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~-----e~l~~l~~l~~~~p~~v~~lrG 256 (546)
++.++|+||.+ ..+..+++......+...++..||+++.++.+. .++..+.++. + .+ +..|
T Consensus 3 i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g---~-d~-~~~G 77 (252)
T cd00845 3 ILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG---Y-DA-VTIG 77 (252)
T ss_pred EEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC---C-CE-Eeec
Confidence 67789999776 455666666543323335678999999877643 4444444432 2 23 4469
Q ss_pred cccc
Q psy11688 257 NHES 260 (546)
Q Consensus 257 NHE~ 260 (546)
|||.
T Consensus 78 NHe~ 81 (252)
T cd00845 78 NHEF 81 (252)
T ss_pred cccc
Confidence 9996
No 421
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=90.14 E-value=0.5 Score=43.34 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=25.7
Q ss_pred cceeeccccCCCCCchH--H---HHHHHHHhcc-c----CCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFSV--E---CIFTLFGFKL-L----YPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~--e---~~~~l~~~~~-~----~~~~~~~~rgnh 527 (546)
...||+||++|.|..+. + .+..+..+.. . .+..+++++|||
T Consensus 47 d~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNH 97 (171)
T cd07384 47 DVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNH 97 (171)
T ss_pred CEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCcc
Confidence 46899999999988542 2 2222222211 1 134599999999
No 422
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.06 E-value=3.8 Score=40.84 Aligned_cols=95 Identities=22% Similarity=0.116 Sum_probs=50.9
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCcHH
Q psy11688 37 KLKAEANEHFK----NQAYNKAIELYSAAIEVNP-T-AIYYANRSFAYLKTE-------AIGYALNDASKAIELDQTYTK 103 (546)
Q Consensus 37 ~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p-~-~~a~~nla~~~~~~g-------~~~~Al~~~~~al~l~p~~~~ 103 (546)
+.+.+|..+.. ..++.+|..+|++|.+..- . ..+.+++|.+|..-. +...|+..+.++-... ++.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 44555555554 3366666666666665432 2 233555555554421 2224666666665555 556
Q ss_pred HHHHHHHHHHH----hcChHHHHHHHHHhhccCC
Q psy11688 104 AYYRRAAAYMS----LGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 104 a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P 133 (546)
+.+.+|.+|.. ..++++|..+|.++-+...
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66666666644 3355666666666665544
No 423
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=90.05 E-value=0.25 Score=44.85 Aligned_cols=39 Identities=10% Similarity=-0.121 Sum_probs=27.8
Q ss_pred CcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-.-.++.||+++++..+.++. ++.. ...+..+++++|||
T Consensus 27 ~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNH 65 (166)
T cd07404 27 ADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNH 65 (166)
T ss_pred CCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCc
Confidence 346899999999998766554 2222 23345699999999
No 424
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.05 E-value=1.7 Score=36.39 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=64.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhcC-----------hHHHHHHHHHhhccCCCCcchh
Q psy11688 74 RSFAYLKTEAIGYALNDASKAIELDQTYT---KAYYRRAAAYMSLGK-----------FKLALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 74 la~~~~~~g~~~~Al~~~~~al~l~p~~~---~a~~~lg~~~~~~g~-----------~~eA~~~~~kal~l~P~~~~~~ 139 (546)
+|..++..|++-+|++..+.++...++.. -.+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988765 345556888876554 3458999999999999886555
Q ss_pred cccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhh
Q psy11688 140 AKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFM 175 (546)
Q Consensus 140 ~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~ 175 (546)
+.+++-.... .+..+...++++.|.
T Consensus 82 ~~la~~l~s~-----------~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSV-----------KYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhH-----------HHHHHHHHHHHHHhc
Confidence 5554432222 334455556665553
No 425
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=90.03 E-value=0.45 Score=49.86 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=41.1
Q ss_pred hHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhh-hhhcC--CCeEEEEccccccchh
Q psy11688 200 QFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFG-FKLLY--PNHFFMARGNHESAYM 263 (546)
Q Consensus 200 ~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~-l~~~~--p~~v~~lrGNHE~~~~ 263 (546)
..+.+..+++.+... ..|-++..||+.|++.-|.+++..+.. ++... .-.|++|.||||...-
T Consensus 25 ~~~~f~~~l~~a~~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 25 QKKAFDELLEIAKEE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred HHHHHHHHHHHHHHc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhc
Confidence 344445555544322 346799999999999888877764433 22222 1369999999998653
No 426
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.01 E-value=0.37 Score=32.13 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhhccC
Q psy11688 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 103 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
++|..+|.+-...++|++|+.+|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999864
No 427
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=89.94 E-value=0.57 Score=46.47 Aligned_cols=39 Identities=18% Similarity=-0.032 Sum_probs=27.8
Q ss_pred cceeeccccCCCCC--chHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGS--FSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~--~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
+-.++.||++|.+. ...++...|-.++...| ++...|||
T Consensus 82 DlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~p--v~~V~GNH 122 (271)
T PRK11340 82 DLILLGGDYVLFDMPLNFSAFSDVLSPLAECAP--TFACFGNH 122 (271)
T ss_pred CEEEEccCcCCCCccccHHHHHHHHHHHhhcCC--EEEecCCC
Confidence 46789999999542 23345556666665556 99999999
No 428
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.90 E-value=2.7 Score=32.67 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~ 111 (546)
.+..+..+|..+-+.|++++|+.+|++|++ .+.+++...|+.+.....+..+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe--------------------------~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE--------------------------VLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------HHHHHHHhCCChHHHHHHHHHH
Confidence 455666777777777787777777766654 3566667777766644433333
No 429
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=1.5 Score=40.62 Aligned_cols=69 Identities=19% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT 102 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~ 102 (546)
.+-+-.++|...+++|.+++|+..++....-+-.+..--.+|.+++..|+-++|...|++|++.+++.+
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 344556789999999999999999876543322366678899999999999999999999999986544
No 430
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.82 E-value=2.1 Score=44.52 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDAS 92 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~ 92 (546)
......|..+|.+|+|.++..+-.-..+++|.+.+|..+|.|.+..++|++|..++.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344556778899999999999999999999999999999999999999999999874
No 431
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=89.65 E-value=5.8 Score=33.78 Aligned_cols=72 Identities=15% Similarity=-0.007 Sum_probs=54.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCC-----HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy11688 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV-------NPT-----AIYYANRSFAYLKTEAIGYALNDASK 93 (546)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------~p~-----~~a~~nla~~~~~~g~~~~Al~~~~~ 93 (546)
++-+-+-=++-.+.-++.++...|+|++++..-++|+.. +.+ -.+-+++|.++-.+|+.++|+..|++
T Consensus 46 EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 46 EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 344555556666677788899999999999888888863 443 46788999999999999999999999
Q ss_pred HHHh
Q psy11688 94 AIEL 97 (546)
Q Consensus 94 al~l 97 (546)
+-+.
T Consensus 126 agEM 129 (144)
T PF12968_consen 126 AGEM 129 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 432
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.47 E-value=4 Score=40.39 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhcc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l 131 (546)
..++..++..+...++++.++..+++.+.++|-+-.+|..+-.+|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999987664
No 433
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.40 E-value=5.3 Score=39.68 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=66.9
Q ss_pred HHHccCHHHHHHHHHHHHHh----CCC-----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---C-------
Q psy11688 45 HFKNQAYNKAIELYSAAIEV----NPT-----AIYYANRSFAYLKTE-AIGYALNDASKAIEL----DQ---T------- 100 (546)
Q Consensus 45 ~~~~g~~~~Ai~~~~~al~~----~p~-----~~a~~nla~~~~~~g-~~~~Al~~~~~al~l----~p---~------- 100 (546)
..++|+++.|..++.|+-.. +|+ +..++|.|....+.+ ++++|..++++|.++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788999999999888654 343 678899999999999 999999999999887 21 1
Q ss_pred cHHHHHHHHHHHHHhcChHH---HHHHHHHhhccCCCCcchh
Q psy11688 101 YTKAYYRRAAAYMSLGKFKL---ALRDYEAVHKARPNDKDAK 139 (546)
Q Consensus 101 ~~~a~~~lg~~~~~~g~~~e---A~~~~~kal~l~P~~~~~~ 139 (546)
....+..++.+|...+.++. |....+.+-...|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 12246667888888777654 4444444444456655544
No 434
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.28 E-value=5.8 Score=40.35 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=62.6
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHH
Q psy11688 56 ELYSAAIEVNP-TAIYYANRSFAYLKTEA------------IGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLAL 122 (546)
Q Consensus 56 ~~~~~al~~~p-~~~a~~nla~~~~~~g~------------~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~ 122 (546)
..+++.++.+| |..+|..+....-.+-. .+..+..+++||+.+|++...+..+=.+..+..+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34677777777 35666655544433322 455677888899889988888887777778888888888
Q ss_pred HHHHHhhccCCCCcchhcc
Q psy11688 123 RDYEAVHKARPNDKDAKAK 141 (546)
Q Consensus 123 ~~~~kal~l~P~~~~~~~~ 141 (546)
+-+++++..+|++...|..
T Consensus 86 ~~we~~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWRE 104 (321)
T ss_pred HHHHHHHHHCCCChHHHHH
Confidence 8899999988888777654
No 435
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.06 E-value=3.9 Score=41.91 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEV---NPT------AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~------~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~ 106 (546)
.++...-......|+|+.|+++.+...+. .++ +..+...+..... -+...|..+...++++.|+...+-.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHH
Confidence 33333334556778888888777666543 332 3344444444333 3466788888888888888888888
Q ss_pred HHHHHHHHhcChHHHHHHHHHhhccCCC
Q psy11688 107 RRAAAYMSLGKFKLALRDYEAVHKARPN 134 (546)
Q Consensus 107 ~lg~~~~~~g~~~eA~~~~~kal~l~P~ 134 (546)
--+.++++.|+..++-..++.+-+..|.
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 8888899999998888888888888875
No 436
>KOG4814|consensus
Probab=88.86 E-value=3.6 Score=44.60 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhc
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQT------YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 140 (546)
...+.|-|.-+++.++|..+++.|...++--|. +.+....++.||..+.+.+.|.+.+++|-+.+|.++-...
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 456678888999999999999999999976553 4566778899999999999999999999999998765443
No 437
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.85 E-value=0.98 Score=29.71 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=13.5
Q ss_pred HHHHHHHHHHccCHHHHHHH--HHHHHHhCC
Q psy11688 71 YANRSFAYLKTEAIGYALND--ASKAIELDQ 99 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~--~~~al~l~p 99 (546)
++.+|..+...|++++|+.. |+-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44445555555555555555 224444444
No 438
>KOG1550|consensus
Probab=88.70 E-value=2.2 Score=47.01 Aligned_cols=112 Identities=22% Similarity=0.148 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFK-----NQAYNKAIELYSAAIEV------NPTAIYYANRSFAYLKTE-----AIGYALNDASKAIE 96 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~-----~g~~~~Ai~~~~~al~~------~p~~~a~~nla~~~~~~g-----~~~~Al~~~~~al~ 96 (546)
..+.+....|.+++. .+|.+.|+.+|..|.+. .-.+.+.+.+|.+|.+.. +++.|+..+.+|-+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 344455666666654 36899999999999771 114667888999998843 78889999999988
Q ss_pred hCCCcHHHHHHHHHHHHHhc---ChHHHHHHHHHhhccCCCCcchhcccccchhh
Q psy11688 97 LDQTYTKAYYRRAAAYMSLG---KFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148 (546)
Q Consensus 97 l~p~~~~a~~~lg~~~~~~g---~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~ 148 (546)
+. ++.+.+.+|.++..-. ++..|.++|..|.+. .+..+...++.|+..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 86 6788899999998765 678999999988764 456666777776653
No 439
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.63 E-value=6.8 Score=34.80 Aligned_cols=84 Identities=8% Similarity=-0.080 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy11688 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYM 113 (546)
Q Consensus 35 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~ 113 (546)
...+.+.........+.+++.......=-+.|+ ...-..-|..++..|+|.+|+..++...+-.+..+.+--.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 334445555555566777766666665556664 5556666667777777777777777776666666666666666776
Q ss_pred HhcCh
Q psy11688 114 SLGKF 118 (546)
Q Consensus 114 ~~g~~ 118 (546)
.+|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 66664
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.54 E-value=1.5 Score=28.82 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcChHHHHHH--HHHhhccCCC
Q psy11688 104 AYYRRAAAYMSLGKFKLALRD--YEAVHKARPN 134 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~--~~kal~l~P~ 134 (546)
.++.+|-.+...|++++|+.. |+-+..++|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344555555555555555555 3344444443
No 441
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.46 E-value=2.2 Score=40.64 Aligned_cols=52 Identities=19% Similarity=0.041 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy11688 50 AYNKAIELYSAAIEVNP-------TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTY 101 (546)
Q Consensus 50 ~~~~Ai~~~~~al~~~p-------~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~ 101 (546)
=+..|++.|.+|++... ...+.+.+|..+.++|++++|++++.+++...-.+
T Consensus 140 fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 140 FLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 35678888888887543 16889999999999999999999999999875433
No 442
>KOG2041|consensus
Probab=88.40 E-value=4.7 Score=44.16 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~l 108 (546)
+++...-.++++.|..+.....|++|.++|.+.=. ..+...|++++.+|++ ++...+.-|++.+.+-.+
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVM 858 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHH
Confidence 34455567778888888888888888888876532 2356677777777765 445556668888888889
Q ss_pred HHHHHHhcChHHHHHHHHHh
Q psy11688 109 AAAYMSLGKFKLALRDYEAV 128 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~ka 128 (546)
|.++...|--++|+++|.+.
T Consensus 859 a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhc
Confidence 99999999999999998764
No 443
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=88.27 E-value=0.78 Score=44.60 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=29.3
Q ss_pred cceeeccccCCC-------CCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDR-------GSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdr-------g~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
...+++||++|. .+...+++..|-.++.. +..|++++|||
T Consensus 34 d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~GNH 80 (241)
T PRK05340 34 DALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHGNR 80 (241)
T ss_pred CEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 568999999985 33456677777666533 23599999999
No 444
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=87.92 E-value=0.44 Score=46.84 Aligned_cols=42 Identities=19% Similarity=0.012 Sum_probs=24.7
Q ss_pred cceeeccccCCCCCchH------HHHHHHHHhcccC-CCcEEEEcCCC-c
Q psy11688 487 FTQLFNGDFVDRGSFSV------ECIFTLFGFKLLY-PNHFFMARVEC-I 528 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~------e~~~~l~~~~~~~-~~~~~~~rgnh-~ 528 (546)
.-.||+||++|.|.... |.-.+.=.+.... ..-++.+.||| +
T Consensus 47 D~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi 96 (257)
T cd08163 47 DSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI 96 (257)
T ss_pred CEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc
Confidence 35789999999998632 1211111111110 12389999999 5
No 445
>KOG3617|consensus
Probab=87.56 E-value=4.2 Score=45.40 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAA----------IEVNP-----------TAIYYANRSFAYLKTEAIGYALNDASKA 94 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~a----------l~~~p-----------~~~a~~nla~~~~~~g~~~~Al~~~~~a 94 (546)
..+++.|..+-..++.+.|+++|+++ +.-+| +...|.--|.-.-..|+.+.|+..|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 34677888888889999999999876 22344 2456666677777889999999888875
Q ss_pred H---------------------HhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhcc
Q psy11688 95 I---------------------ELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA 131 (546)
Q Consensus 95 l---------------------~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l 131 (546)
- .....+--|-|.+|..|...|++.+|+..|.+|-..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4 234556678889999999999999999999887554
No 446
>KOG3325|consensus
Probab=87.44 E-value=6.1 Score=34.77 Aligned_cols=120 Identities=23% Similarity=0.354 Sum_probs=82.5
Q ss_pred cccccccch--hHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhc
Q psy11688 191 FTVCGDIHG--QFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYG 268 (546)
Q Consensus 191 ~~viGDihg--~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~ 268 (546)
+.++||+|= .-.+|-.-|++.-.|.....++++|.+. +.|..+++..+. ..++++||--|.-
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 567888883 3344555555555677777899999864 568999998876 6799999987753
Q ss_pred chhhhhhhchHHHHHHHHHhhccccceeee--c-ceEEEEeCCccCCCCCChhhhhccCCCCCCCCchhhhhhhcCCCCC
Q psy11688 269 FEGEVKSKYTDLMAQFFTEVYNWLPLCHCI--N-NKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQI 345 (546)
Q Consensus 269 ~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~--~-~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~dllWsdp~~ 345 (546)
...|..-++ + -++-|+||-. - +=|.||
T Consensus 67 ---------------------~~yP~~kvvtvGqfkIG~chGhq-V--------------------------iP~gd~-- 96 (183)
T KOG3325|consen 67 ---------------------LKYPENKVVTVGQFKIGLCHGHQ-V--------------------------IPWGDP-- 96 (183)
T ss_pred ---------------------ccCCccceEEeccEEEEeecCcE-e--------------------------ecCCCH--
Confidence 112433222 2 3788999986 1 236665
Q ss_pred CCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCe
Q psy11688 346 PNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGR 395 (546)
Q Consensus 346 ~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~ 395 (546)
+.+.-.-++.+++.++-||+...+-|+. +|+
T Consensus 97 -----------------~sL~~LaRqldvDILl~G~Th~f~Aye~--eg~ 127 (183)
T KOG3325|consen 97 -----------------ESLALLARQLDVDILLTGHTHKFEAYEH--EGK 127 (183)
T ss_pred -----------------HHHHHHHHhcCCcEEEeCCceeEEEEEe--CCc
Confidence 3466667888999999999988776643 544
No 447
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=87.41 E-value=1.1 Score=41.85 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=33.6
Q ss_pred cceeeccccCCCCCchH--HHHHHHHHhcccCC----CcEEEEcCCC-cc-cccchhhhcccccc
Q psy11688 487 FTQLFNGDFVDRGSFSV--ECIFTLFGFKLLYP----NHFFMARVEC-IF-TLFGFKLLYPNHFF 543 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~--e~~~~l~~~~~~~~----~~~~~~rgnh-~~-~~~gf~~e~~~~~~ 543 (546)
.-.+|+||++|.|+.+. |....+--++-.++ -.++.+.||| +. ..+.-..|-.+||.
T Consensus 44 D~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~ 108 (195)
T cd08166 44 DIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFE 108 (195)
T ss_pred CEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHH
Confidence 45799999999999642 34444444432211 3478899999 43 12222344455553
No 448
>KOG2047|consensus
Probab=87.40 E-value=7.1 Score=42.56 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNP----T-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT---------- 100 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~---------- 100 (546)
.-|...|..|-..|+.+.|...|++|.+.+- + +..|++-|..-++..+++.|+...++|+..-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4578889999999999999999999998654 2 789999999999999999999999998855211
Q ss_pred --------cHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccch
Q psy11688 101 --------YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECN 146 (546)
Q Consensus 101 --------~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~ 146 (546)
..+.|-..+......|-++.....|++++.+.=-.+.+-.+.+..+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL 521 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL 521 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2335666777777888899999999999988766666655555444
No 449
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.39 E-value=11 Score=38.37 Aligned_cols=104 Identities=9% Similarity=-0.091 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy11688 29 VEDKERAEKLKAEANEHFKN------------QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAI 95 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~------------g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al 95 (546)
.++|.+.+.|.......-.. .-.+..+..|++|++.+|+ ...+..+=.+..+.-+-++..+-.++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56777888887666533222 2246778899999999995 6666666667778888888899999999
Q ss_pred HhCCCcHHHHHHHHHHHH---HhcChHHHHHHHHHhhccC
Q psy11688 96 ELDQTYTKAYYRRAAAYM---SLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 96 ~l~p~~~~a~~~lg~~~~---~~g~~~eA~~~~~kal~l~ 132 (546)
..+|+++..|...-.... ..-.+++....|.++++.-
T Consensus 93 ~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 93 FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL 132 (321)
T ss_pred HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 999999887766533332 2345778888888887653
No 450
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.79 E-value=0.8 Score=27.50 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHH
Q psy11688 104 AYYRRAAAYMSLGKFKLALRDYE 126 (546)
Q Consensus 104 a~~~lg~~~~~~g~~~eA~~~~~ 126 (546)
+++.+|.++..+|++++|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555555555555555555443
No 451
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=86.52 E-value=1 Score=40.56 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=35.0
Q ss_pred hCcchhhhH-HHHHHHHHHhcCCCCCcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 462 QGKLHRKYA-YRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 462 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
..|+|+.+. +..+.+.++. .+.-+..+++||++ +.+++..|..++ . .++..+|||
T Consensus 6 iSD~H~~~~~~~~~~~~~~~--~~~~d~ii~~GD~~-----~~~~~~~l~~~~--~--~~~~V~GN~ 61 (158)
T TIGR00040 6 ISDTHGPLRATELPVELFNL--ESNVDLVIHAGDLT-----SPFVLKEFEDLA--A--KVIAVRGNN 61 (158)
T ss_pred EecccCCcchhHhHHHHHhh--ccCCCEEEEcCCCC-----CHHHHHHHHHhC--C--ceEEEccCC
Confidence 468887753 2334444432 11345689999998 457776665433 2 389999999
No 452
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=86.51 E-value=1.6 Score=38.36 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=26.2
Q ss_pred CcceeeccccCCCCCch-HHH-HHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRGSFS-VEC-IFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg~~~-~e~-~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-...++.||+++.|..+ .+. ..++-.++... ..+++++|||
T Consensus 36 ~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNH 78 (144)
T cd07400 36 PDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNH 78 (144)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCC
Confidence 35689999999999752 222 23333333221 2599999999
No 453
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=86.47 E-value=0.54 Score=44.50 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=42.3
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChHH-------------------------HHHHHhhhh
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVE-------------------------CIFTLFGFK 244 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~e-------------------------~l~~l~~l~ 244 (546)
++..++|.+|+++.+.++.+.+... ..|.++++||++-....+.| .++-++...
T Consensus 7 kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 7 KILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 4788999999999999998887554 45679999999765433322 222222222
Q ss_pred hcCCCeEEEEccccccchh
Q psy11688 245 LLYPNHFFMARGNHESAYM 263 (546)
Q Consensus 245 ~~~p~~v~~lrGNHE~~~~ 263 (546)
-..+--+++++||||....
T Consensus 86 ~~~~~p~~~vPG~~Dap~~ 104 (255)
T PF14582_consen 86 GELGVPVFVVPGNMDAPER 104 (255)
T ss_dssp HCC-SEEEEE--TTS-SHH
T ss_pred HhcCCcEEEecCCCCchHH
Confidence 2344579999999998543
No 454
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=86.22 E-value=0.84 Score=41.67 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=27.1
Q ss_pred CcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
....+++||++++|..+.. +..|-.+ +..+++++|||
T Consensus 43 ~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNH 79 (168)
T cd07390 43 DDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNH 79 (168)
T ss_pred CCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCC
Confidence 4679999999999987644 3333332 33599999999
No 455
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=86.07 E-value=1.1 Score=43.46 Aligned_cols=39 Identities=13% Similarity=-0.099 Sum_probs=28.9
Q ss_pred CcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-.-.|+.||+++++..+.+++..|..+ .+..|++++|||
T Consensus 33 ~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 33 IDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 346899999999987666666655543 223499999999
No 456
>KOG0530|consensus
Probab=86.05 E-value=6.8 Score=38.08 Aligned_cols=115 Identities=12% Similarity=0.006 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCcHHHHHHH
Q psy11688 32 KERAEKLKAEANEHFK-NQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIG-YALNDASKAIELDQTYTKAYYRR 108 (546)
Q Consensus 32 ~~~a~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~-~Al~~~~~al~l~p~~~~a~~~l 108 (546)
|.....|.-+-.++-. ..+..+-+++.++.++.+| |.+.|..|-.+.-.+|++. .-+.....++..|..|..||..+
T Consensus 74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 3333344333333332 3356777899999999999 5999999999999999998 88999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccch
Q psy11688 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECN 146 (546)
Q Consensus 109 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~ 146 (546)
--+....+.|+.-++...+.++.+--|..++...--+.
T Consensus 154 qW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi 191 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVI 191 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEE
Confidence 99999999999999999999999988888876654433
No 457
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=85.70 E-value=7 Score=41.27 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=107.3
Q ss_pred ccccccccch-hH----hhHHHHHHHhCCC----CCCCCeeeeccccccC-C-----------ChHHHHHHHhhhhhcCC
Q psy11688 190 KFTVCGDIHG-QF----YDLMNIFELNGLP----SPDNPYLFNGDFVDRG-S-----------FSVECIFTLFGFKLLYP 248 (546)
Q Consensus 190 ~~~viGDihg-~~----~~l~~il~~~~~~----~~~~~~~~lGD~vdrG-~-----------~~~e~l~~l~~l~~~~p 248 (546)
.++.++|+|- .. +.+...++..+-+ +....++..||.||.. - +..+-.+.+..+...-|
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp 306 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVP 306 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCC
Confidence 4688999995 22 2233344433222 1224567788999942 1 12233344444444445
Q ss_pred C--eEEEEccccccchhhhhh-cchhhhhhhchHHHHHHHHHhhccccceeee-cceEEEEeCCccCCCCCChhhhhccC
Q psy11688 249 N--HFFMARGNHESAYMNQIY-GFEGEVKSKYTDLMAQFFTEVYNWLPLCHCI-NNKVLVMHGGLFSSDNVTLEDIRTID 324 (546)
Q Consensus 249 ~--~v~~lrGNHE~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~lP~~~~~-~~~~~~vHgGi~~~~~~~~~~i~~~~ 324 (546)
. .|++.+||||..-..... .+.......| ...+-.|-.=|....+ |..++..||= +++||...-
T Consensus 307 ~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf-----~~~n~~~v~NP~~~~l~G~~vL~~hG~-------sidDii~~v 374 (481)
T COG1311 307 EHIKVFIMPGNHDAVRQALPQPHFPELIKSLF-----SLNNLLFVSNPALVSLHGVDVLIYHGR-------SIDDIIKLV 374 (481)
T ss_pred CCceEEEecCCCCccccccCCCCcchhhcccc-----cccceEecCCCcEEEECCEEEEEecCC-------CHHHHHhhC
Confidence 5 489999999986654332 2222222222 1111111111443334 4467777774 466665543
Q ss_pred CCC--CCCCchhhhhhhcCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCC
Q psy11688 325 RNR--QPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSA 402 (546)
Q Consensus 325 r~~--~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa 402 (546)
... +.+.....+-|.|.-=.+.-+ |..... +..-+-|-=.---++++.||+.. .|+....+.+++..+|.
T Consensus 375 P~~~~~~~~~ame~lLk~rHlaPtyg------g~~p~a-P~~kD~lVIeevPDv~~~Ghvh~-~g~~~y~gv~~vns~T~ 446 (481)
T COG1311 375 PGADYDSPLKAMEELLKRRHLAPTYG------GTLPIA-PETKDYLVIEEVPDVFHTGHVHK-FGTGVYEGVNLVNSGTW 446 (481)
T ss_pred CCCCccchHHHHHHHHHhcccCCCCC------Cccccc-cCCcCceeeccCCcEEEEccccc-cceeEEeccceEEeeee
Confidence 221 112222333344543111100 000000 00001111112346789999995 89999999999999999
Q ss_pred CCCCCCCCCceeEEEeeCCCCceeEEEEe
Q psy11688 403 PNYCDSVGNKGAFITMKGKDMVPHFTTYE 431 (546)
Q Consensus 403 ~~y~~~~~n~~a~~~~~~~~~~~~~~~~~ 431 (546)
+.+.. .+-++-|...-..+.+..+.
T Consensus 447 q~qTe----fqk~vni~p~~~~v~vv~~~ 471 (481)
T COG1311 447 QEQTE----FQKMVNINPTPGNVPVVDFD 471 (481)
T ss_pred cchhc----cceEEEecCcccceeEEecc
Confidence 88643 46666663333444444443
No 458
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.27 E-value=5.9 Score=42.69 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=80.9
Q ss_pred ccCHHH-HHHHHHHHHHhCCC-H---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHH
Q psy11688 48 NQAYNK-AIELYSAAIEVNPT-A---IYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLAL 122 (546)
Q Consensus 48 ~g~~~~-Ai~~~~~al~~~p~-~---~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~ 122 (546)
.+..+. |+..+...+.++|. . .+.+ ++..+..++....|......++..||++..++.++|.+....|....|.
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 344333 67777777777774 2 3344 7888899999999999999999999999999999999999888877776
Q ss_pred HHHHH-hhccCCCCcchhcccccchhhhhhh
Q psy11688 123 RDYEA-VHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 123 ~~~~k-al~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
..+.. +.+..|++..+...+-.+++ ++++
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 151 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY 151 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHH-HHHH
Confidence 66655 89999999998888766665 4444
No 459
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.02 E-value=14 Score=36.63 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC------C-----HHHHHHHHHHHHHccCHHH---HHH
Q psy11688 29 VEDKERAEKLKAEANEHFKNQ-AYNKAIELYSAAIEV----NP------T-----AIYYANRSFAYLKTEAIGY---ALN 89 (546)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~----~p------~-----~~a~~nla~~~~~~g~~~~---Al~ 89 (546)
+.....++.+++.|...++++ ++++|+..+++|.++ .+ + ...+..++.+|+..+.++. |..
T Consensus 29 ~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~ 108 (278)
T PF08631_consen 29 DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALN 108 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 344567788899999999999 999999999999887 22 1 5678889999999887764 444
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 90 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
..+.+-.-.|+.+..++..=.+..+.++.+++.+.+.+++.--+
T Consensus 109 ~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 109 ALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44444455677777775554555558889999999999887543
No 460
>KOG0918|consensus
Probab=85.01 E-value=0.039 Score=55.73 Aligned_cols=195 Identities=12% Similarity=-0.131 Sum_probs=113.4
Q ss_pred CCCCCeeeeccccccCCChHHHHHHHhhhhhcCCCeEEEEccccccchhhhhhcchhhhhhhc----hHHHHHHHHHhhc
Q psy11688 215 SPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY----TDLMAQFFTEVYN 290 (546)
Q Consensus 215 ~~~~~~~~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~ 290 (546)
++....|.++++++++.+.++.+.+-+..+..+-.+...+++||+... +++.++.-.- ...+++..++-++
T Consensus 46 ~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~~-----~~R~~LVlp~l~S~riyvid~~~ep~~ 120 (476)
T KOG0918|consen 46 PDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDSS-----FKRRYLVLPSLNSGRIYVIDVKTEPRK 120 (476)
T ss_pred CcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCcc-----hhhhheeecccccCceEEEEeccCcCc
Confidence 344468899999999999999998888888888888999999995432 2222211110 1123445566777
Q ss_pred cccceeeecceEEEEeCCccCCCCCChhhhhccCCCC--CCCCch-hhhhhhcCCCCCCCCCCCCCCCCeeeeCHHH--H
Q psy11688 291 WLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNR--QPPDEG-LMCELLWSDPQIPNGRAPSKRGVGVHFGPDV--T 365 (546)
Q Consensus 291 ~lP~~~~~~~~~~~vHgGi~~~~~~~~~~i~~~~r~~--~~~~~~-~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~--~ 365 (546)
..+..++.+ ++++.||+. .|.......+-.+.-.. +...++ .-..++-+|-.....|. .+|....||.+- .
T Consensus 121 ~~l~k~i~~-~il~~~~l~-~Pht~hcla~g~v~vs~lGd~~gn~kg~f~llD~~~~~k~tw~--~~~~~p~~gyDfwyq 196 (476)
T KOG0918|consen 121 PSLEKTIDP-DILEKTGLA-CPHTSHCLASGNVMVSCLGDAEGNAKGGFLLLDSDFNEKGTWE--KPGHSPLFGYDFWYQ 196 (476)
T ss_pred cceeeeech-hhHhhcCCc-CCcccccccCCCeeEEeecccccCCcCCeEEecCccceecccc--cCCCccccccceeec
Confidence 777777777 999999999 77765554443322111 010111 11112222211111221 122223333332 2
Q ss_pred HHHHHhcCCcEEEEeccccccCceEeCCCeEEEEeCCCCCCCCCCCceeEEEeeC
Q psy11688 366 KAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKG 420 (546)
Q Consensus 366 ~~fl~~~~~~~iir~H~~~~~G~~~~~~~~~itifsa~~y~~~~~n~~a~~~~~~ 420 (546)
-+++...+.+...+.|.....+.+...++ ++.++.+-|.-..+|.++.+.+..
T Consensus 197 pr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~ 249 (476)
T KOG0918|consen 197 PRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGD 249 (476)
T ss_pred cccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCC
Confidence 33445555666667777654444444555 888888888777778888888843
No 461
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=84.73 E-value=1.8 Score=41.69 Aligned_cols=41 Identities=5% Similarity=-0.100 Sum_probs=27.3
Q ss_pred CcceeeccccCCCC--C---c--hHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRG--S---F--SVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg--~---~--~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-...+++||++|.. . . ..++...|-.++.. +..|++++|||
T Consensus 31 ~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GNH 78 (231)
T TIGR01854 31 ADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGNR 78 (231)
T ss_pred CCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 35789999999952 1 1 23455555555532 34599999999
No 462
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.10 E-value=1.2 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCcEEEEeccccc
Q psy11688 362 PDVTKAFLERNKLEYIIRSHEVKQ 385 (546)
Q Consensus 362 ~~~~~~fl~~~~~~~iir~H~~~~ 385 (546)
...+..++++.++++++-||.-..
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~~ 213 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHNL 213 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccc
Confidence 355778889999999999998653
No 463
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.07 E-value=2.5 Score=42.34 Aligned_cols=91 Identities=19% Similarity=0.167 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy11688 50 AYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIEL--DQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127 (546)
Q Consensus 50 ~~~~Ai~~~~~al~~~p~~~a~~nla~~~~~~g~~~~Al~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~eA~~~~~k 127 (546)
+|..-..+|+-...+.|++..-.|+|.+..+..-.+.++...+....- -.++-..|--+|..+.++|+-++|...|++
T Consensus 311 DW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 311 DWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred ChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
Confidence 444445667777777787777889999998888888888887766554 234555677789999999999999999999
Q ss_pred hhccCCCCcchhc
Q psy11688 128 VHKARPNDKDAKA 140 (546)
Q Consensus 128 al~l~P~~~~~~~ 140 (546)
++.+.++..+..+
T Consensus 391 Ai~La~~~aer~~ 403 (415)
T COG4941 391 AIALARNAAERAF 403 (415)
T ss_pred HHHhcCChHHHHH
Confidence 9999887666543
No 464
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.03 E-value=1.6 Score=43.10 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 54 AIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 54 Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
|..+|.+|+.+.|+ ...|..+|..+...|+.=+|+-+|-|++-..--++.|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45556666666664 55566666666666666666655555554443345555555554444
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.01 E-value=1.7 Score=43.05 Aligned_cols=76 Identities=5% Similarity=0.017 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHhcChHHHHHHHHHhhccCCCCcchhccc
Q psy11688 67 TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR-RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKF 142 (546)
Q Consensus 67 ~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~-lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l 142 (546)
+...|...+.--.+.+-|.+--..|.++++..|.|.+.|.. -+.-+...++++.|...|.++++++|+++..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 35666666666667778888888999999999999998877 56677888999999999999999999999887543
No 466
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.98 E-value=3.7 Score=40.44 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHh
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAV 128 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~ka 128 (546)
+...+..|.+.|.+.+|++..++++.+||-+...+..+-.++..+|+-=+|++.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4446777888999999999999999999999999999999999999988888888765
No 467
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=83.93 E-value=1.9 Score=40.89 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=26.6
Q ss_pred cceeeccccCCCCCchHHHHHHHHHh-ccc--CCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFSVECIFTLFGF-KLL--YPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~e~~~~l~~~-~~~--~~~~~~~~rgnh 527 (546)
.-.|+.||++|.+..+.+.+..+... +.. -...++++.|||
T Consensus 43 d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNH 86 (223)
T cd00840 43 DFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNH 86 (223)
T ss_pred CEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 35899999999987655443333322 111 133499999999
No 468
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.61 E-value=41 Score=34.83 Aligned_cols=111 Identities=13% Similarity=-0.004 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---hcChHHHHHHHHHh-hccCCCCcchh
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKAIEL----DQTYTKAYYRRAAAYMS---LGKFKLALRDYEAV-HKARPNDKDAK 139 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~al~l----~p~~~~a~~~lg~~~~~---~g~~~eA~~~~~ka-l~l~P~~~~~~ 139 (546)
+....++=.+|...++|+.-++..+..-.+ -++....-+.+|.++-+ .|+.++|++.+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 677788889999999999988888777776 45566777888999999 99999999999994 45566788888
Q ss_pred cccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCCcc
Q psy11688 140 AKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSL 180 (546)
Q Consensus 140 ~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p~~ 180 (546)
-.++++++.+-.. ...-+.+...+++..+.+.+..+|+.
T Consensus 221 gL~GRIyKD~~~~--s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 221 GLLGRIYKDLFLE--SNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHH--cCccchHHHHHHHHHHHHHHcCCccc
Confidence 8888888654221 12233445667777777888777653
No 469
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.49 E-value=5 Score=35.63 Aligned_cols=82 Identities=11% Similarity=-0.026 Sum_probs=69.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhhhh
Q psy11688 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150 (546)
Q Consensus 71 ~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~ 150 (546)
+.....+-+...+.+++...+...--+.|+.++.-..-|..+...|++.+|++.++....-.+..+...-.++.|+..++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34444445568899999998888889999999999999999999999999999999998888877877778888887776
Q ss_pred hh
Q psy11688 151 RM 152 (546)
Q Consensus 151 ~~ 152 (546)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 54
No 470
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=83.42 E-value=10 Score=39.28 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------h-----C------------CC---cHHHHHHHHHH
Q psy11688 62 IEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIE---------L-----D------------QT---YTKAYYRRAAA 111 (546)
Q Consensus 62 l~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~---------l-----~------------p~---~~~a~~~lg~~ 111 (546)
++.+| ....+..++.++..+|+++.|.+..++||- . + ++ ...+.++....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45567 478888888899899999888888888861 1 1 11 22367778888
Q ss_pred HHHhcChHHHHHHHHHhhccCCC-Ccc
Q psy11688 112 YMSLGKFKLALRDYEAVHKARPN-DKD 137 (546)
Q Consensus 112 ~~~~g~~~eA~~~~~kal~l~P~-~~~ 137 (546)
+.+.|.+.-|.++.+-.+.+||. |+-
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 89999999999999999999998 554
No 471
>PLN02533 probable purple acid phosphatase
Probab=83.19 E-value=1.3 Score=46.98 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=38.4
Q ss_pred ccccccccchhHhhHHHHHHHhCCCCCCCCeeeeccccccCCChH---HHHHHHhhhhhcCCCeEEEEccccccch
Q psy11688 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSV---ECIFTLFGFKLLYPNHFFMARGNHESAY 262 (546)
Q Consensus 190 ~~~viGDihg~~~~l~~il~~~~~~~~~~~~~~lGD~vdrG~~~~---e~l~~l~~l~~~~p~~v~~lrGNHE~~~ 262 (546)
+++++||++.. ......++.+... +.+-+++.||++.-+.... +...++..+.... -++.+.||||...
T Consensus 141 ~f~v~GDlG~~-~~~~~tl~~i~~~-~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~~~ 212 (427)
T PLN02533 141 KFAVSGDLGTS-EWTKSTLEHVSKW-DYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHELEK 212 (427)
T ss_pred EEEEEEeCCCC-cccHHHHHHHHhc-CCCEEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCccccccc
Confidence 58899998532 1112233333222 3567899999987543321 1222333332222 3788999999753
No 472
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.08 E-value=8.8 Score=33.89 Aligned_cols=54 Identities=20% Similarity=0.047 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHH
Q psy11688 67 TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKL 120 (546)
Q Consensus 67 ~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~e 120 (546)
.......+|...+..|+|+-|++..+.++..+|++.++...++.++..+|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 455566667777778888888888888888888888888888888777765433
No 473
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.01 E-value=1.5 Score=26.32 Aligned_cols=23 Identities=13% Similarity=-0.223 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q psy11688 70 YYANRSFAYLKTEAIGYALNDAS 92 (546)
Q Consensus 70 a~~nla~~~~~~g~~~~Al~~~~ 92 (546)
+.+++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666777777777777666553
No 474
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=83.01 E-value=2.3 Score=40.43 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=25.1
Q ss_pred cceeeccccCCCCCch--HHHHHHHHH-hc-ccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFS--VECIFTLFG-FK-LLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~--~e~~~~l~~-~~-~~~~~~~~~~rgnh 527 (546)
.-.|+.||++|.|... .+.+.-++. ++ ...| +++++|||
T Consensus 37 d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p--~~~~~GNH 79 (214)
T cd07399 37 AFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIP--YSVLAGNH 79 (214)
T ss_pred CEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCc--EEEECCCC
Confidence 3478999999999833 333332222 21 2255 88999999
No 475
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.00 E-value=2.4 Score=41.55 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=28.3
Q ss_pred cceeeccccCCCCCchHHHHH----HHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFSVECIF----TLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~e~~~----~l~~~~~~~~~~~~~~rgnh 527 (546)
+-.++.||++|+..-+.+... +|-.++-..|-.|+++.|||
T Consensus 41 D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNH 85 (253)
T TIGR00619 41 DALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNH 85 (253)
T ss_pred CEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCC
Confidence 458999999999876655432 33333333335699999999
No 476
>KOG2300|consensus
Probab=82.64 E-value=20 Score=37.98 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCc-------
Q psy11688 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAI-ELDQTY------- 101 (546)
Q Consensus 34 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~a~~nla~~~~~~g~~~~Al~~~~~al-~l~p~~------- 101 (546)
.+....-+|.....-+.|+.|...|..|.+.... +.+-.|+|..|+..++-+. +.+++ .+.|.|
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHH
Confidence 3455567788888889999999999999987663 6677889999999877554 33444 344542
Q ss_pred ---HHHHHHHHHHHHHhcChHHHHHHHHHhhccC
Q psy11688 102 ---TKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132 (546)
Q Consensus 102 ---~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 132 (546)
..+++..|.-.+.++++.||.....+.++..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2257778888899999999999999999876
No 477
>KOG0546|consensus
Probab=82.39 E-value=0.91 Score=45.70 Aligned_cols=83 Identities=14% Similarity=-0.020 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy11688 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS 114 (546)
Q Consensus 36 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~ 114 (546)
....+.+.+..+.+.+..|+..-..+++.+++ ..+++.++.+++.+.++++|++++..+....|++....-.+...-..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 34456778888899999999998888887775 78999999999999999999999999999999988765555555444
Q ss_pred hcCh
Q psy11688 115 LGKF 118 (546)
Q Consensus 115 ~g~~ 118 (546)
..++
T Consensus 356 ~~~~ 359 (372)
T KOG0546|consen 356 KKQY 359 (372)
T ss_pred HHHH
Confidence 4444
No 478
>KOG0529|consensus
Probab=82.32 E-value=30 Score=35.95 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=79.3
Q ss_pred HHHccCH-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHH------------ccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy11688 45 HFKNQAY-NKAIELYSAAIEVNPT-AIYYANRSFAYLK------------TEAIGYALNDASKAIELDQTYTKAYYRRAA 110 (546)
Q Consensus 45 ~~~~g~~-~~Ai~~~~~al~~~p~-~~a~~nla~~~~~------------~g~~~~Al~~~~~al~l~p~~~~a~~~lg~ 110 (546)
..+.|.| ++++..=.+.+..+|+ ..+|..+-.++.. ..-.++-+.....+++.+|+...+|+.+..
T Consensus 38 ~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w 117 (421)
T KOG0529|consen 38 KREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKW 117 (421)
T ss_pred HHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445666 4577777777888996 4444444333322 234556677888999999999999999999
Q ss_pred HHHHhcC--hHHHHHHHHHhhccCCCCcchhcccccchhhhhhh
Q psy11688 111 AYMSLGK--FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRM 152 (546)
Q Consensus 111 ~~~~~g~--~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~ 152 (546)
++.+.+. +..-++..+++++.||.|-.+|....-+....++.
T Consensus 118 ~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 118 VLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 9997665 57889999999999999999887766665544433
No 479
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.31 E-value=8.8 Score=38.01 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIEL 97 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l 97 (546)
....++..++..+...|+++.++..+++.+..+| +..+|..+-.+|++.|+...|+..|++.-++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4455677788889999999999999999999999 6889999999999999999999999877664
No 480
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=82.28 E-value=1.2 Score=44.23 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHh-cCCcEEEEecccc
Q psy11688 365 TKAFLER-NKLEYIIRSHEVK 384 (546)
Q Consensus 365 ~~~fl~~-~~~~~iir~H~~~ 384 (546)
..++.+. .++++||-||+-+
T Consensus 209 ~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 209 AYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHhcCCCCcEEEeCCCcc
Confidence 4456665 6999999999864
No 481
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.15 E-value=15 Score=33.63 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCcHHHHHHHHH
Q psy11688 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYALNDASKAI-ELDQTYTKAYYRRAA 110 (546)
Q Consensus 37 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----~~a~~nla~~~~~~g~~~~Al~~~~~al-~l~p~~~~a~~~lg~ 110 (546)
+....|....++|+...|+..|+++-.-.|- ..+...-|.+++..|-|++-..-.+..- .-+|--..+---||.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence 3455666777888888888888888776552 3455555666677788876544332211 122333345566888
Q ss_pred HHHHhcChHHHHHHHHHhhc
Q psy11688 111 AYMSLGKFKLALRDYEAVHK 130 (546)
Q Consensus 111 ~~~~~g~~~eA~~~~~kal~ 130 (546)
+-.+.|++..|.++|.....
T Consensus 176 Aa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccchHHHHHHHHHHHc
Confidence 99999999999999988765
No 482
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.11 E-value=11 Score=35.33 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcChHHHH
Q psy11688 50 AYNKAIELYSAAIEVNP---TAIYYANRSFAYLKTEAIGYALNDASKAIELDQT----YTKAYYRRAAAYMSLGKFKLAL 122 (546)
Q Consensus 50 ~~~~Ai~~~~~al~~~p---~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~~g~~~eA~ 122 (546)
.-++|.+.|-++- -.| ++...+.+|.-|. ..+.++|++.+.+++++.+. |++.+..++.++..+++++.|-
T Consensus 121 ~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3366777665543 344 3788888887775 66888899999999988643 4788888999999999998874
No 483
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.78 E-value=17 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy11688 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIE 63 (546)
Q Consensus 33 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 63 (546)
..+..+..+|..+-+.|+|++|+.+|.++|+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456677778888888888888888777665
No 484
>KOG3617|consensus
Probab=81.71 E-value=18 Score=40.80 Aligned_cols=61 Identities=23% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCCCcHHHHHH----------HHHHHHHhcChHHHHHHHHH
Q psy11688 68 AIYYANRSFAYLKTEAIGYALNDASKA----------IELDQTYTKAYYR----------RAAAYMSLGKFKLALRDYEA 127 (546)
Q Consensus 68 ~~a~~nla~~~~~~g~~~~Al~~~~~a----------l~l~p~~~~a~~~----------lg~~~~~~g~~~eA~~~~~k 127 (546)
-..|++.|.-+-..++.+.|+++|+|+ +.-+|...+-|.+ -|+-+...|+.+.|+..|.+
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 467888888888888999999998874 3445554443333 47777788888888888877
Q ss_pred h
Q psy11688 128 V 128 (546)
Q Consensus 128 a 128 (546)
|
T Consensus 938 A 938 (1416)
T KOG3617|consen 938 A 938 (1416)
T ss_pred h
Confidence 6
No 485
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=81.48 E-value=4.1 Score=39.16 Aligned_cols=51 Identities=10% Similarity=-0.186 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCCcceeeccccCCCCCch--H-HHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 473 ILMDIKKKKILNLDFTQLFNGDFVDRGSFS--V-ECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 473 ~l~~~~~~~~~~~~~~~~f~gd~vdrg~~~--~-e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
+|.++.+......-...|.+||..+.+..+ . ++..+|-.+ ...++++||||
T Consensus 46 ~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~~v~~V~GNH 99 (225)
T TIGR00024 46 IIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVT----FRDLILIRGNH 99 (225)
T ss_pred HHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhc----CCcEEEECCCC
Confidence 444444433333335799999999765542 2 222233222 23699999999
No 486
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=81.16 E-value=1.8 Score=42.92 Aligned_cols=80 Identities=9% Similarity=0.145 Sum_probs=65.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYAN-RSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~n-la~~~~~~g~~~~Al~~~~~al~l~p~~~~a~ 105 (546)
+..-+.++..|.+-+...-+.|.|.+--..|.++++..| +...|.. -+.-+...++.+.|.+.+.++++++|+++..|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 345556677888888888889999999999999999999 4666654 44556678899999999999999999998866
Q ss_pred HH
Q psy11688 106 YR 107 (546)
Q Consensus 106 ~~ 107 (546)
+.
T Consensus 180 ~e 181 (435)
T COG5191 180 IE 181 (435)
T ss_pred HH
Confidence 43
No 487
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=80.68 E-value=3.3 Score=40.90 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=25.7
Q ss_pred cceeeccccCCCCC----chHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGS----FSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~----~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
.-.|+.||+|+.|. .+.+.+.-++. ++..| ++++.|||
T Consensus 42 d~vv~~GDlv~~~~~~~~~~~~~~~~~l~-~l~~p--~~~v~GNH 83 (267)
T cd07396 42 DFVVQLGDIIDGDNARAEEALDAVLAILD-RLKGP--VHHVLGNH 83 (267)
T ss_pred CEEEECCCeecCCCchHHHHHHHHHHHHH-hcCCC--EEEecCcc
Confidence 35899999999998 33333333332 22345 99999999
No 488
>KOG3807|consensus
Probab=80.41 E-value=13 Score=37.32 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------
Q psy11688 39 KAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELD------------------- 98 (546)
Q Consensus 39 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~a~~nla~~~~~~g~~~~Al~~~~~al~l~------------------- 98 (546)
.+.-...++..+..+-|+.-..|++++|. +.+|..+|.-- ..-..+|...+++|++.-
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 33445567777888888899999999997 77777776532 222334555555555321
Q ss_pred ----CCcHHHH--HHHHHHHHHhcChHHHHHHHHHhhccCC
Q psy11688 99 ----QTYTKAY--YRRAAAYMSLGKFKLALRDYEAVHKARP 133 (546)
Q Consensus 99 ----p~~~~a~--~~lg~~~~~~g~~~eA~~~~~kal~l~P 133 (546)
..+...| -++|+|-.++|+..||++.++...+-.|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1233333 4579999999999999999998777666
No 489
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.24 E-value=5.5 Score=39.15 Aligned_cols=62 Identities=19% Similarity=0.014 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHHHHHHHhhccCCCCcchhcccccchhh
Q psy11688 87 ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148 (546)
Q Consensus 87 Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~ 148 (546)
|..+|.+|+.+.|++..+|..+|.++...++.=+|+-+|-|++...--.+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997654457777777766665
No 490
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.07 E-value=40 Score=35.74 Aligned_cols=124 Identities=13% Similarity=0.091 Sum_probs=87.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcChHHHH
Q psy11688 44 EHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLAL 122 (546)
Q Consensus 44 ~~~~~g~~~~Ai~~~~~al~~~p-~~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~eA~ 122 (546)
..+..|+.-.|-+....+++..| ++..-..++.++..+|.|+.|.++..-+=.+-..-.++..-+-.....++++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 35667899999999999999888 47777788999999999999999886665554444555566667788999999999
Q ss_pred HHHHHhhccCCCCcchhcccccchhhhhhhhhhhhchHHHHHHHHHHHHhhhhcCC
Q psy11688 123 RDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQD 178 (546)
Q Consensus 123 ~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~il~~a~eiL~~~p 178 (546)
..-+-.+.-.-+++++....+-.-..+ +...+.+...+.++...|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l-----------~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADAL-----------QLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHH-----------hHHHHHHHHHHHHhccCC
Confidence 888887776666666654433332222 233344555556655444
No 491
>PHA02546 47 endonuclease subunit; Provisional
Probab=79.98 E-value=2.9 Score=42.91 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=26.4
Q ss_pred cceeeccccCCCC-CchHHHHHHHHH--hcc--cCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRG-SFSVECIFTLFG--FKL--LYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg-~~~~e~~~~l~~--~~~--~~~~~~~~~rgnh 527 (546)
.-.|+.||+.|+. +.+.++..++.. ++. ..+-.|+++.|||
T Consensus 41 D~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNH 86 (340)
T PHA02546 41 TTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNH 86 (340)
T ss_pred CEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCC
Confidence 5689999999995 445444433322 111 2244599999999
No 492
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=79.03 E-value=3.7 Score=43.23 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=27.1
Q ss_pred cceeeccccCCCCCchHHHHH----HHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGSFSVECIF----TLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~~e~~~----~l~~~~~~~~~~~~~~rgnh 527 (546)
.-.|+.||+.|++..+.+... ++-.++- .+..|+++.|||
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~I~GNH 84 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNH 84 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEcCCC
Confidence 458999999999876654432 2233332 234599999999
No 493
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.93 E-value=21 Score=37.00 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C---
Q psy11688 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIELDQ-T--- 100 (546)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p-~--- 100 (546)
..+|..-..+++.....+.++|.+..|.+..+-.+.+||. ..+.+.+=...++.++|+--+..++....... +
T Consensus 96 ~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 3567778888999999999999999999999999999994 35566666666778888877777766555211 1
Q ss_pred -cHHHHHHHHHHHHHhcCh---------------HHHHHHHHHhhccCCC
Q psy11688 101 -YTKAYYRRAAAYMSLGKF---------------KLALRDYEAVHKARPN 134 (546)
Q Consensus 101 -~~~a~~~lg~~~~~~g~~---------------~eA~~~~~kal~l~P~ 134 (546)
-|..-+..+.++..+++- ++|.+.+.+|+...|.
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 234567788999999888 8888888888888773
No 494
>KOG2863|consensus
Probab=78.63 E-value=2.3 Score=42.83 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=36.0
Q ss_pred eCHHHHHHHHHhcCCcEEEEeccccccCceEeCCCe-EEEEeCCCCCCCC
Q psy11688 360 FGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGR-CITVFSAPNYCDS 408 (546)
Q Consensus 360 fg~~~~~~fl~~~~~~~iir~H~~~~~G~~~~~~~~-~itifsa~~y~~~ 408 (546)
.|..++.+.|+...-.++.-+|=-+.---.+.|+.+ -.|=|+|..=|-.
T Consensus 205 LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~H~~~~~~tkflaldKclp 254 (456)
T KOG2863|consen 205 LGSPALEELLEDLKPQYWFSAHLHVKFAALVQHNKRSHVTKFLALDKCLP 254 (456)
T ss_pred cCChHHHHHHHHhCcchhhhhhHhhHHhhhhcccCcCCCcccccccccCC
Confidence 577889999999999999999887654444555543 4777888776643
No 495
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=78.47 E-value=4.7 Score=38.90 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=24.7
Q ss_pred CcceeeccccCCCCCchHHHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 486 DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 486 ~~~~~f~gd~vdrg~~~~e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
-+-.|+-||++++++.+ +....+-.++. .|..++++.|||
T Consensus 42 ~D~viiaGDl~~~~~~~-~~~~~l~~l~~-l~~~v~~V~GNH 81 (232)
T cd07393 42 EDIVLIPGDISWAMKLE-EAKLDLAWIDA-LPGTKVLLKGNH 81 (232)
T ss_pred CCEEEEcCCCccCCChH-HHHHHHHHHHh-CCCCeEEEeCCc
Confidence 34578999999988743 22222222232 123489999999
No 496
>KOG2300|consensus
Probab=77.76 E-value=48 Score=35.26 Aligned_cols=92 Identities=15% Similarity=-0.011 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCC---C-----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHH
Q psy11688 34 RAEKLKAEANEHFK-NQAYNKAIELYSAAIEVNP---T-----AIYYANRSFAYLKTE-AIGYALNDASKAIELDQTYTK 103 (546)
Q Consensus 34 ~a~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p---~-----~~a~~nla~~~~~~g-~~~~Al~~~~~al~l~p~~~~ 103 (546)
.+....++|..++. .++.+.|...+++|..+.. + ..++..+|.+|.... .+..|...+++|+++...++.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 35556777877654 6889999999999976532 2 678999999999988 788899999999999876653
Q ss_pred ----HHHHHHHHHHHhcChHHHHHHH
Q psy11688 104 ----AYYRRAAAYMSLGKFKLALRDY 125 (546)
Q Consensus 104 ----a~~~lg~~~~~~g~~~eA~~~~ 125 (546)
..+.+++...-..++..|++.+
T Consensus 125 wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 125 WSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hhHHHHHHHHHHHhhhccchhHHHHH
Confidence 4577899999999999999874
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.10 E-value=16 Score=35.50 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhCC----C---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcC
Q psy11688 51 YNKAIELYSAAIEVNP----T---AIYYANRSFAYLKTEAIGYALNDASKAIELDQT------YTKAYYRRAAAYMSLGK 117 (546)
Q Consensus 51 ~~~Ai~~~~~al~~~p----~---~~a~~nla~~~~~~g~~~~Al~~~~~al~l~p~------~~~a~~~lg~~~~~~g~ 117 (546)
-...|+.+++|++.-. . ......+|..|+..|+|++|++.++.+...-.. .......+..|+..+|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777776533 1 577889999999999999999999999765332 23356678889999999
Q ss_pred hHHHHHHHHHhh
Q psy11688 118 FKLALRDYEAVH 129 (546)
Q Consensus 118 ~~eA~~~~~kal 129 (546)
.+..+...-+.+
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 988877665543
No 498
>KOG1310|consensus
Probab=76.74 E-value=5.1 Score=42.57 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=62.3
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---cChHHHHHHHHHhhccCCCCcchhcccccchhhhhhhh
Q psy11688 82 EAIGYALNDASKAIELDQTYTKAYYRRAAAYMSL---GKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153 (546)
Q Consensus 82 g~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~~---g~~~eA~~~~~kal~l~P~~~~~~~~l~~~~~~l~~~~ 153 (546)
.....|+.+|.++++.-|+....+.++|.++.+. |+--.|+++...|++++|....+++.++++...+.++.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL 462 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence 4466789999999999999999999999999874 56667899999999999999999999999888777663
No 499
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=76.69 E-value=5.6 Score=37.21 Aligned_cols=42 Identities=5% Similarity=-0.097 Sum_probs=28.4
Q ss_pred cceeeccccCCCCCch---HHHHHHHHHhcccCCCcEEEEcCCCc
Q psy11688 487 FTQLFNGDFVDRGSFS---VECIFTLFGFKLLYPNHFFMARVECI 528 (546)
Q Consensus 487 ~~~~f~gd~vdrg~~~---~e~~~~l~~~~~~~~~~~~~~rgnh~ 528 (546)
.-.|++||+++-+... .+.+..++..-....-.++++.|||-
T Consensus 43 d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 43 DLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred CEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 3579999999987763 55555555432222334899999993
No 500
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=76.34 E-value=4.5 Score=39.24 Aligned_cols=39 Identities=15% Similarity=-0.011 Sum_probs=24.1
Q ss_pred cceeeccccCCCCC-----c-------h---H-HHHHHHHHhcccCCCcEEEEcCCC
Q psy11688 487 FTQLFNGDFVDRGS-----F-------S---V-ECIFTLFGFKLLYPNHFFMARVEC 527 (546)
Q Consensus 487 ~~~~f~gd~vdrg~-----~-------~---~-e~~~~l~~~~~~~~~~~~~~rgnh 527 (546)
...|+.||++|+.. . . . ++..+|-.+. ..-.|+++.|||
T Consensus 37 d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNH 91 (243)
T cd07386 37 KYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNH 91 (243)
T ss_pred cEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCC
Confidence 57899999999831 0 0 1 1222333333 234599999999
Done!