RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11688
(546 letters)
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 567 bits (1463), Expect = 0.0
Identities = 204/303 (67%), Positives = 237/303 (78%), Gaps = 2/303 (0%)
Query: 131 ARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAK 190
R D+ +F + ++++ + + KLH+KYAY+IL+ +K L SLV IT+ + K
Sbjct: 4 PRLEDEKVTLEFVK--EMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEK 61
Query: 191 FTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNH 250
TVCGD HGQFYDL+NIFELNGLPS NPYLFNGDFVDRGSFSVE I TLF FKLLYPNH
Sbjct: 62 ITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNH 121
Query: 251 FFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLF 310
F + RGNHE+ MN++YGFEGEVK+KY + M F+EV+NWLPL H IN KVLV+HGGLF
Sbjct: 122 FHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLF 181
Query: 311 SSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLE 370
S D VTL+DIR IDR RQPPD GLMCELLWSDPQ GR+PSKRGVG FGPDVTK FLE
Sbjct: 182 SDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLE 241
Query: 371 RNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTY 430
N LEYIIRSHEVK +GYEV HDG+CITVFSAPNYCD +GNKGAFI + G D+ P FT +
Sbjct: 242 ENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQF 301
Query: 431 EAV 433
EAV
Sbjct: 302 EAV 304
Score = 122 bits (309), Expect = 3e-31
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 38/123 (30%)
Query: 440 PALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDIKK----------------KKI- 482
P LE++KVTL+F+ ++++ +K Q KLH+KYAY+IL+ +K+ +KI
Sbjct: 4 PRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKIT 63
Query: 483 ------------LNL---------DFTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFF 521
LN+ LFNGDFVDRGSFSVE I TLF FKLLYPNHF
Sbjct: 64 VCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFH 123
Query: 522 MAR 524
+ R
Sbjct: 124 LNR 126
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 366 bits (942), Expect = e-125
Identities = 135/277 (48%), Positives = 181/277 (65%), Gaps = 8/277 (2%)
Query: 158 LHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPD 217
L+++ +L ++K +F + +LV + A TVCGDIHGQF DL+ +F+ NG P P+
Sbjct: 1 LYKEEILELLREVKEIFRQEPNLVEV----SAPVTVCGDIHGQFDDLLRLFDKNGQP-PE 55
Query: 218 NPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY 277
Y+F GD+VDRG FS+E I LF K+LYPN + RGNHES MN+IYGF E K KY
Sbjct: 56 TNYVFLGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKY 115
Query: 278 TDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCE 337
+ + + F E ++WLPL IN K+L MHGGL S D TL+DIR + R ++PPD+GL+ +
Sbjct: 116 GERIYEKFNEAFSWLPLAALINGKILCMHGGL-SPDLTTLDDIRKLKRPQEPPDDGLLID 174
Query: 338 LLWSDP-QIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRC 396
LLWSDP Q NG PS RG FGPD FL++N L+ IIR+H+V DGYE DG+
Sbjct: 175 LLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKL 234
Query: 397 ITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAV 433
+T+FSAPNYCD GNK A + + KD+ F ++
Sbjct: 235 VTIFSAPNYCDRFGNKAAVLKVD-KDLKLTFEQFKPG 270
Score = 65.7 bits (161), Expect = 7e-12
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR 524
+F GD+VDRG FS+E I LF K+LYPN + R
Sbjct: 59 VFLGDYVDRGPFSIEVILLLFALKILYPNRIVLLR 93
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 293 bits (753), Expect = 1e-95
Identities = 126/321 (39%), Positives = 182/321 (56%), Gaps = 34/321 (10%)
Query: 142 FTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQF 201
+ +++ + K LH KY IL + + + ++ ++ + T+CGD+HG+
Sbjct: 4 KDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKL 63
Query: 202 YDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESA 261
DL IF NGLPSP+NPY+FNGDFVDRG S+E + LF F L+YPN + RGNHE
Sbjct: 64 DDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDH 123
Query: 262 YMNQIYGFEGEVKSKYTDLMA---QFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLE 318
MN YGF EV SKY + +V++WLPL I+NK+LV+HGG+ SD+ L+
Sbjct: 124 IMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGI--SDSTDLD 181
Query: 319 DIRTIDRNR-----QPP-------------DEGL---------MCELLWSDPQIPNGRAP 351
+ IDR++ +PP D + ++LWSDP+ G P
Sbjct: 182 LLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGCKP 241
Query: 352 -SKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVG 410
+ RG G +FGPDVT L+++ L +IRSHE K +GYE H+ + IT+FSA NY +
Sbjct: 242 NTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGS 301
Query: 411 NKGAFITMKGKDMVPHFTTYE 431
N+GA+I + G D+ PHF Y+
Sbjct: 302 NRGAYIKL-GPDLTPHFVQYQ 321
Score = 52.0 bits (125), Expect = 3e-07
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR 524
+FNGDFVDRG S+E + LF F L+YPN + R
Sbjct: 83 VFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNR 117
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 286 bits (735), Expect = 2e-93
Identities = 107/243 (44%), Positives = 148/243 (60%), Gaps = 4/243 (1%)
Query: 192 TVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHF 251
TVCGDIHGQFYDL+ +F + G P PD YLF GD+VDRG +SVE L K+ YP+
Sbjct: 45 TVCGDIHGQFYDLLELFRVGGDP-PDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRI 103
Query: 252 FMARGNHESAYMNQIYGFEGEVKSKYTDLMA-QFFTEVYNWLPLCHCINNKVLVMHGGLF 310
+ RGNHES + Q+YGF E KY + ++ T+++++LPL I+N++ +HGGL
Sbjct: 104 TLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGL- 162
Query: 311 SSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLE 370
S TL+ IR IDR ++ P EG MC+LLWSDP G S RG G FG DV + F
Sbjct: 163 SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNH 222
Query: 371 RNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTY 430
N L I R+H++ +GY+ D + +TV+SAPNYC GN + + + + + F +
Sbjct: 223 NNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMEL-DEHLKRSFKVF 281
Query: 431 EAV 433
EA
Sbjct: 282 EAA 284
Score = 51.5 bits (124), Expect = 4e-07
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR 524
LF GD+VDRG +SVE L K+ YP+ + R
Sbjct: 73 LFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLR 107
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 261 bits (670), Expect = 2e-83
Identities = 112/282 (39%), Positives = 160/282 (56%), Gaps = 20/282 (7%)
Query: 156 GKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPS 215
G+L + A RI+ + + + +L+ I EA TVCGDIHGQFYDL+ +FE+ G P+
Sbjct: 14 GRLSEEDALRIITEGAEILRQEPNLLRI----EAPVTVCGDIHGQFYDLLKLFEVGGSPA 69
Query: 216 PDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKS 275
+ YLF GD+VDRG FS+EC+ L+ K+LYP F+ RGNHE ++ + + F+ E K
Sbjct: 70 -NTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKI 128
Query: 276 KYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLM 335
KY++ + E ++ LPL +N + L +HGGL S + TL+DIR +DR R+PP G M
Sbjct: 129 KYSERVYDACMEAFDCLPLAALMNQQFLCVHGGL-SPELKTLDDIRKLDRFREPPAFGPM 187
Query: 336 CELLWSDPQIPNGRAP--------SKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDG 387
C+LLWSDP G + RG + FL++N L IIR+HE + G
Sbjct: 188 CDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAG 247
Query: 388 YEVAHDGR------CITVFSAPNYCDSVGNKGAFITMKGKDM 423
Y + + IT+FSAPNY D NK A + + M
Sbjct: 248 YRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM 289
Score = 61.2 bits (149), Expect = 3e-10
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR--VEC--IFTLFGFKL 536
LF GD+VDRG FS+EC+ L+ K+LYP F+ R EC + F FK
Sbjct: 74 LFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQ 124
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 253 bits (649), Expect = 1e-80
Identities = 113/250 (45%), Positives = 159/250 (63%), Gaps = 7/250 (2%)
Query: 171 KALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRG 230
+ +F++Q L+ E EA +CGDIHGQ+YDL+ +FE G P P++ YLF GD+VDRG
Sbjct: 36 REIFLSQPILL----ELEAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLGDYVDRG 90
Query: 231 SFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYN 290
S+E I L +K+ YP +FF+ RGNHE A +N+IYGF E K +Y + + FT+ +N
Sbjct: 91 KQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFN 150
Query: 291 WLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDP-QIPNGR 349
LP+ I+ K+ MHGGL S D ++E IR I R PD+GL+C+LLWSDP + G
Sbjct: 151 CLPVAAIIDEKIFCMHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGW 209
Query: 350 APSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSV 409
+ RGV FG DV FL ++ L+ I R+H+V +DGYE + +T+FSAPNYC
Sbjct: 210 GENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEF 269
Query: 410 GNKGAFITMK 419
N GA +++
Sbjct: 270 DNAGAMMSVD 279
Score = 48.5 bits (116), Expect = 3e-06
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR--VEC--IFTLFGF 534
LF GD+VDRG S+E I L +K+ YP +FF+ R EC I ++GF
Sbjct: 81 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGF 129
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 225 bits (576), Expect = 8e-70
Identities = 109/257 (42%), Positives = 159/257 (61%), Gaps = 7/257 (2%)
Query: 166 ILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGD 225
+L +++ +FM+Q L+ I VCGD HGQ+YDL+ IFE G P P + YLF GD
Sbjct: 33 VLTEVREIFMSQPMLLEIR----PPVRVCGDTHGQYYDLLRIFEKCGFP-PYSNYLFLGD 87
Query: 226 FVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFF 285
+VDRG SVE I F +K++YP +FF+ RGNHE A +N++YGF +VK +Y + + F
Sbjct: 88 YVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAF 147
Query: 286 TEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQI 345
T+V+N +P+C I+ K++ MHGGL S D +L + I+R PD G++C+LLW+DP+
Sbjct: 148 TDVFNTMPVCCVISEKIICMHGGL-SPDLTSLASVNEIERPCDVPDRGILCDLLWADPED 206
Query: 346 P-NGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPN 404
G S RGV FG D+ FL+ ++ I+R+H+V + GY + +TVFSAPN
Sbjct: 207 EVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPN 266
Query: 405 YCDSVGNKGAFITMKGK 421
YC N A + + K
Sbjct: 267 YCGEFDNDAAVMNIDDK 283
Score = 48.4 bits (115), Expect = 5e-06
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR--VEC--IFTLFGF 534
LF GD+VDRG SVE I F +K++YP +FF+ R EC I ++GF
Sbjct: 83 LFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGF 131
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 226 bits (579), Expect = 3e-69
Identities = 113/316 (35%), Positives = 159/316 (50%), Gaps = 56/316 (17%)
Query: 179 SLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIF 238
+ V I VED + V GD+HGQ +D++ + E G P + Y+FNGD+VDRG++ +E
Sbjct: 56 NCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFL 115
Query: 239 TLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQF---FTEVYNWLPLC 295
L +K+L P+ ++ RGNHES + +YGFE EV +KY D + LPL
Sbjct: 116 LLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFEGLPLA 175
Query: 296 HCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQ--------------------------- 328
I +V HGGLF S ++ + R
Sbjct: 176 SIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLD 235
Query: 329 PPDEGLMC---ELLWSDPQIPNGRAPSK-RGVGVHFGPDVTKAFLERNKLEYIIRSHE-- 382
PP EG ++LWSDP + G +P+K RG+G+ +GPD T+ FLE+N L+ IIRSHE
Sbjct: 236 PPGEGSNLIPGDVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGP 295
Query: 383 ---VKQD-------GYEVAHD---GRCITVFSAPNYC------DSVGNKGAFITMKGKDM 423
K+ GY V HD G+ IT+FSAP+Y + NKGA+I ++ D
Sbjct: 296 DAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDF 355
Query: 424 V-PHFTTYEAVGVSPP 438
P F T+EAV P
Sbjct: 356 SDPQFHTFEAVKPRPK 371
Score = 44.0 bits (104), Expect = 1e-04
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR 524
+FNGD+VDRG++ +E L +K+L P+ ++ R
Sbjct: 98 VFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLR 132
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 224 bits (572), Expect = 5e-69
Identities = 111/249 (44%), Positives = 163/249 (65%), Gaps = 7/249 (2%)
Query: 171 KALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRG 230
+ +F++Q I +E EA +CGD+HGQ++DL+ +FE G P P++ YLF GD+VDRG
Sbjct: 45 RDIFISQP----ILLELEAPLKICGDVHGQYFDLLRLFEYGGYP-PESNYLFLGDYVDRG 99
Query: 231 SFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYN 290
S+E I L +K+ YP +FF+ RGNHE A +N+IYGF E K +YT + + FT+ +N
Sbjct: 100 KQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFN 159
Query: 291 WLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDP-QIPNGR 349
LP+ I+ K+L MHGGL S + LE IR I R PD GL+C+LLWSDP + G
Sbjct: 160 CLPVAALIDEKILCMHGGL-SPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGW 218
Query: 350 APSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSV 409
A ++RGV F ++ + FL++++L+ I R+H+V +DGYE + +T+FSAPNYC
Sbjct: 219 ADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEF 278
Query: 410 GNKGAFITM 418
N G+ +T+
Sbjct: 279 DNAGSMMTI 287
Score = 42.7 bits (100), Expect = 3e-04
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR--VEC--IFTLFGF 534
LF GD+VDRG S+E I L +K+ YP +FF+ R EC I ++GF
Sbjct: 90 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGF 138
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 219 bits (559), Expect = 3e-68
Identities = 89/235 (37%), Positives = 126/235 (53%), Gaps = 22/235 (9%)
Query: 192 TVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHF 251
V GDIHG DL+ + E G P P++ +F GD+VDRG SVE I L K+L P++
Sbjct: 1 YVIGDIHGCLDDLLRLLEKIGFP-PNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNV 58
Query: 252 FMARGNHESAYMNQIYGFEGEVK---------SKYTDLMAQFFTEVYNWLPLCHCINN-K 301
+ RGNHE +N +YGF E + K + + + F +V+ +LPL I K
Sbjct: 59 ILLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKK 118
Query: 302 VLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFG 361
VL +HGGL + ++ ++ P++ L +LLWSDP G S R G G
Sbjct: 119 VLCVHGGLSPGLPL-------EEQIKEEPEDQLPEDLLWSDPLELPGGFGSSRRGG---G 168
Query: 362 PDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFI 416
PD + FL++N L+ I+R H ++GYE HDG IT+ S NYC GNK A +
Sbjct: 169 PDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAAL 223
Score = 45.5 bits (108), Expect = 2e-05
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFF 521
+F GD+VDRG SVE I L K+L N
Sbjct: 29 IFLGDYVDRGPDSVEVIDLLLALKILPDNVIL 60
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 212 bits (542), Expect = 1e-64
Identities = 104/247 (42%), Positives = 145/247 (58%), Gaps = 5/247 (2%)
Query: 189 AKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYP 248
A VCGDIHGQFYDL +F+ G P+ Y+F GDFVDRG SVE + L K+ YP
Sbjct: 43 APVNVCGDIHGQFYDLQALFKEGG-DIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYP 101
Query: 249 NHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMA-QFFTEVYNWLPLCHCINNKVLVMHG 307
+ + RGNHES Q+YGF E+ KY + + F +V++ LPL I ++L +HG
Sbjct: 102 GNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHG 161
Query: 308 GLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKA 367
GL S D T++ IRTIDR + P EG C+L+WSDP+ A + RG G FG VTK
Sbjct: 162 GL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKE 220
Query: 368 FLERNKLEYIIRSHEVKQDGYEV-AHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPH 426
F N L I R+H++ +GY+ D +TV+SAPNYC GN + + + +++
Sbjct: 221 FCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLD-ENLQQT 279
Query: 427 FTTYEAV 433
+ T++ V
Sbjct: 280 WKTFKEV 286
Score = 37.5 bits (87), Expect = 0.012
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR 524
+F GDFVDRG SVE + L K+ YP + + R
Sbjct: 74 IFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLR 108
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 208 bits (530), Expect = 7e-63
Identities = 102/274 (37%), Positives = 143/274 (52%), Gaps = 28/274 (10%)
Query: 173 LFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPD-------NPYLFNGD 225
+F + ++ + A + GDIHGQF DLM +F+ G P + YLF GD
Sbjct: 36 IFKQEPMVLRL----RAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGD 91
Query: 226 FVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMA--- 282
+VDRGS S+E I L K+ YPN + RGNHE +N ++GF E K + +
Sbjct: 92 YVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGD 151
Query: 283 ---QFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRN-RQPPDEGLMCEL 338
+ ++ WLPL I +K+L MHGG+ S N + +I + R E ++ +L
Sbjct: 152 SVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSIN-HVSEIEDLKRPLTMEFGEQVVMDL 210
Query: 339 LWSDPQ--------IPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEV 390
LWSDP PN P G+ V FGPD FLE N L+ IIR+HE DG+E
Sbjct: 211 LWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFER 270
Query: 391 AHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMV 424
G+ IT+FSA NYC + GN GA + + G+D+
Sbjct: 271 FAQGKLITLFSATNYCGTAGNAGAILVL-GRDLT 303
Score = 45.5 bits (108), Expect = 3e-05
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 487 FTQLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMAR----VECIFTLFGFKL 536
LF GD+VDRGS S+E I L K+ YPN + R I LFGF+
Sbjct: 84 IDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFRE 137
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 104 bits (259), Expect = 9e-26
Identities = 54/224 (24%), Positives = 81/224 (36%), Gaps = 67/224 (29%)
Query: 190 KFTVCGDIHGQFYDL---MNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLL 246
+ V GD+HG DL + + EL G P PD LF GD VDRG S+E + LF KL
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDL-VLFLGDLVDRGPPSLEVLALLFALKLK 59
Query: 247 YPNHFFMARGNHESAYMNQIYGFEGEVKS-------------------------KYTDLM 281
P ++ RGNH+ N GF E K L+
Sbjct: 60 APGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLV 119
Query: 282 AQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWS 341
+ F E+ + L L ++ K+L++HG L S + +
Sbjct: 120 WEEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDI---------------------- 157
Query: 342 DPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQ 385
FG + + L+ N ++ ++R H
Sbjct: 158 ----------------YLFGEEALEDLLKDNGVDLVLRGHTHVP 185
Score = 43.6 bits (102), Expect = 8e-05
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 465 LHRKYAYRILMDIKKKKILNLDFTQ-LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMA 523
LH L+ + + + LF GD VDRG S+E + LF KL P ++
Sbjct: 8 LHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKAPGPVYLV 67
Query: 524 R 524
R
Sbjct: 68 R 68
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 89.3 bits (221), Expect = 6e-21
Identities = 51/153 (33%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 263 MNQIYGFEGEVKSKYTD----LMAQFFTEVYNWLPLCHCINNKV-LVMHGGLFSSDNVTL 317
+ +YGF E KY + L A E ++ LPL L HGGL + L
Sbjct: 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLL 62
Query: 318 EDIRTIDRNR--QPPDEGLMCELLWSDPQIPNGR--APSKRGVGVHFGPDVTKAFLERNK 373
+ I +DR R + P G +LLWSDP + R P RGV DVT F +
Sbjct: 63 DIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHT 121
Query: 374 LEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYC 406
+ I R+H + G +T FSAPNYC
Sbjct: 122 PKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 87.7 bits (217), Expect = 3e-18
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 20 SNPAPKEVSV------EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYAN 73
P E SV E K+ A KLK + N+ ++N+ +NKAI+LYS AIE P +YY+N
Sbjct: 106 ELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSN 165
Query: 74 RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
R+ + + D + A+ELD Y+KA RRA AY LGK+ AL D A
Sbjct: 166 RAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219
Score = 43.4 bits (102), Expect = 2e-04
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 22 PAPKEVSVE-DKERAEKLKAEANEHFKNQA---YNKAIELYSAAIEVNP----TAIYYAN 73
PA E S E D+E + +++A Y +A + A+++ AI
Sbjct: 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNL 336
Query: 74 R-SFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132
R +F LK + + AL D SK+IELD T++Y +RA+ + LG A D++ K
Sbjct: 337 RGTFKCLKGKHLE-ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395
Query: 133 PNDKD 137
D D
Sbjct: 396 SEDPD 400
Score = 34.2 bits (78), Expect = 0.18
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 45 HFKNQAYNKAIELYSAAIEVNPTAIY-YANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
+ +A+ S +IE++P Y R+ L+ A D KA++L+
Sbjct: 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400
Query: 104 AYYRRAAAYMSLGKFKLALRDYE 126
YY RA + G+F A +DY+
Sbjct: 401 IYYHRAQLHFIKGEFAQAGKDYQ 423
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 79.0 bits (195), Expect = 5e-18
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 36 EKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKA 94
E L N ++K Y++A+E Y A+E++P A Y N + AY K AL D KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134
+ELD KAYY AY LGK++ AL YE + PN
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
Score = 32.4 bits (74), Expect = 0.15
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
+A Y LG + AL YE + P++ DA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYN 39
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 78.7 bits (194), Expect = 8e-16
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASK 93
A+ L+ +A E F + + A++LY+ AI+++P A YA+R+ A +K A+ DA+K
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECN 146
AIELD + KAY R+ A M L +++ A E P D EC+
Sbjct: 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114
>gnl|CDD|149395 pfam08321, PPP5, PPP5 TPR repeat region. This region is specific
to the PPP5 subfamily of serine/threonine phosphatases
and contains TPR repeats.
Length = 95
Score = 59.3 bits (144), Expect = 4e-11
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 440 PALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDIKK 479
P LE+ KVTL+F+ D+M+ +K Q KLH+K AY+IL+ +K+
Sbjct: 45 PRLEDGKVTLEFVKDMMERFKDQKKLHKKCAYQILLQVKE 84
Score = 35.8 bits (83), Expect = 0.008
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 157 KLHRKYAYRILMDIKALFMTQDSLVHI 183
KLH+K AY+IL+ +K L SLV I
Sbjct: 69 KLHKKCAYQILLQVKELLKKLPSLVEI 95
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 55.0 bits (133), Expect = 6e-10
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKT-EAIGYALND 90
+ AE LK N FK Y++AIE Y A+E++P A Y N + AYLK + AL D
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 91 ASKAIELD 98
KA+ELD
Sbjct: 61 LEKALELD 68
Score = 32.3 bits (74), Expect = 0.067
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A A LG + A+ YE + P++ +A
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA 39
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 56.1 bits (136), Expect = 5e-09
Identities = 45/183 (24%), Positives = 62/183 (33%), Gaps = 37/183 (20%)
Query: 193 VCGDIHGQFYDLMNIFELNGLPSPDNPYLFN-GDFVDRGSFSVECIFTLFGFKLLYPNHF 251
V GDIHG + L + G P L + GD +DRG S+ C+ L LL P F
Sbjct: 5 VVGDIHGHYSLLQKALDAVGF-DPARDRLISVGDLIDRGPESLACL-EL----LLEPW-F 57
Query: 252 FMARGNHESAYMNQIYGFEGEVKSKYTDLMA---QFFTEVY------NWLPLCH------ 296
RGNHE M I E +A ++F ++
Sbjct: 58 HAVRGNHE--QM-AIDALRAEPLD-AVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAI 113
Query: 297 ---CINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSK 353
KV ++H S D + ELLWS +I +
Sbjct: 114 EVETEGGKVGIVHADYPSDDWSDGVG-------AVTLRPEDIEELLWSRTRIQKAQTQPI 166
Query: 354 RGV 356
+GV
Sbjct: 167 KGV 169
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 48.1 bits (114), Expect = 7e-07
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 193 VCGDIHGQFYDLMNIFELNGL--PSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNH 250
V DIHG L + E PD L GD V G E + LL
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDF-VLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60
Query: 251 FFMARGNHE 259
++ GNH+
Sbjct: 61 VYVVPGNHD 69
Score = 30.0 bits (67), Expect = 1.6
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 451 FMTDLMQTYKAQGKLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVECIFTLF 510
++D+ G L A +K DF L GD V G E +
Sbjct: 2 VISDI------HGNLEALEAVLEAALAAAEKP---DFV-LVLGDLVGDGPDPEEVLAAAL 51
Query: 511 GFKLLYPNHFFMAR 524
LL ++
Sbjct: 52 ALLLLLGIPVYVVP 65
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 48.8 bits (117), Expect = 1e-06
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 43/146 (29%)
Query: 195 GDIHGQFYDLMNIFELNGLPSPDNPYLFN-------GDFVDRGSFSVECIFTLFGFKLLY 247
GD+HG I + G+ ++ ++ GD DRG +E + LLY
Sbjct: 4 GDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEIL------WLLY 57
Query: 248 PN-----------HFFMARGNHESAYMNQIYGFEGEVKSKYTDL-----MAQFF-----T 286
HF + GNHE MN + G V KY + M +
Sbjct: 58 KLEQEAAKAGGKVHFLL--GNHE--LMN-LCGDFRYVHPKYFNEFGGLAMRRRELFSPGG 112
Query: 287 EVYNWL---PLCHCINNKVLVMHGGL 309
E+ WL P+ +N+ L +HGGL
Sbjct: 113 ELGRWLRSKPVIVKVND-TLFVHGGL 137
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 50.1 bits (120), Expect = 3e-06
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 3/136 (2%)
Query: 2 ARVYLSLEYLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAA 61
L+ YL + P + ++D+ AE L + A + Y A
Sbjct: 92 VLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQA 151
Query: 62 IEVNPTAIYYANRSFAYLKTEA--IGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFK 119
+ ++P ++Y A A L A + + D A + +SLG +
Sbjct: 152 LAIDPRSLY-AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210
Query: 120 LALRDYEAVHKARPND 135
LAL Y RPN+
Sbjct: 211 LALAAYRKAIALRPNN 226
Score = 31.2 bits (71), Expect = 1.6
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 51 YNKAIELYSAAIEVNP--TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
KA+ L +V P Y F + E G L D A EL A R
Sbjct: 79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAEL-----LAL--R 131
Query: 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
AY+ LG+ +LA + YE P AK
Sbjct: 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKL 163
Score = 30.8 bits (70), Expect = 2.6
Identities = 30/142 (21%), Positives = 45/142 (31%), Gaps = 37/142 (26%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNP---TAIYYANRSFAYLK--TEAIGY--- 86
A LKA F+ + Y A E A++ P A+ A S L +A Y
Sbjct: 263 AHYLKALV--DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320
Query: 87 ---------------------------ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFK 119
A+ S A+ LD A AY++LG F+
Sbjct: 321 ILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380
Query: 120 LALRDYEAVHKARPNDKDAKAK 141
A + P + A+ +
Sbjct: 381 KAAEYLAKATELDPENAAARTQ 402
Score = 30.4 bits (69), Expect = 3.0
Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 17 TNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSF 76
T ++ K + + + A + E + + + + Y AI+ Y A++ P++
Sbjct: 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR 744
Query: 77 AYLKTEAIGYALNDASKAIELDQTYTK-------AYYRRAAAYMSLGKFKLALRDYEAVH 129
A L A + ++A++ + + K A Y++ + A++ Y+ V
Sbjct: 745 ALL-------ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797
Query: 130 KARPND 135
K P++
Sbjct: 798 KKAPDN 803
Score = 30.1 bits (68), Expect = 4.1
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 44 EHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYT 102
+ + KA E + A E++P A + L A+ D A +LD
Sbjct: 372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
+A +Y+ G+F AL + + K +P++
Sbjct: 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464
>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat.
Length = 34
Score = 38.9 bits (92), Expect = 1e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
KA Y AY+ LGK+ AL YE + PN+
Sbjct: 2 KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
Score = 31.6 bits (73), Expect = 0.048
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT 67
N + K Y++A+E Y A+E+NP
Sbjct: 8 GNAYLKLGKYDEALEYYEKALELNPN 33
>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 37.8 bits (89), Expect = 4e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
+A Y AY+ LG + AL YE + PN+
Sbjct: 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 30.5 bits (70), Expect = 0.15
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT 67
N + K Y++A+E Y A+E++P
Sbjct: 8 GNAYLKLGDYDEALEYYEKALELDPN 33
>gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO.
Members of this protein family include YfiO, a
near-essential protein of the outer membrane, part of a
complex involved in protein insertion into the bacterial
outer membrane. Many proteins in this family are
annotated as ComL, based on the involvement of this
protein in natural transformation with exogenous DNA in
Neisseria gonorrhoeae. This protein family shows
sequence similarity to, but is distinct from, the
tol-pal system protein YbgF (TIGR02795) [Protein fate,
Protein and peptide secretion and trafficking].
Length = 235
Score = 41.8 bits (99), Expect = 4e-04
Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 39/156 (25%)
Query: 19 ASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRS--- 75
+S + VE+ AE+L EA E + Y +AI+ + A P + YA ++
Sbjct: 18 SSKKKKEADPVEEWP-AEELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLD 75
Query: 76 --FAYLKTEAIGYALNDASKAIELDQTYTK----------AYYRRAAAYMSLGKFKLALR 123
+AY Y D ++AI + + AYY R + + R
Sbjct: 76 LAYAY-------YKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ--IDRVDR 126
Query: 124 DYEAVHKA----------RPNDK---DAKAKFTECN 146
D A +A PN + DAK +
Sbjct: 127 DQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR 162
Score = 28.7 bits (65), Expect = 6.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 78 YLKTEAIGYALNDASKAIELDQTYT---KAYYRRAAAYMSLGKFKLALRDYEAV 128
YLK A A+N +E +A R AY+ LG LA +D AV
Sbjct: 176 YLKRGAYVAAINRFQTVVENYPDTPATEEALARLVEAYLKLGLTDLA-QDAAAV 228
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 41.2 bits (97), Expect = 7e-04
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 35/148 (23%)
Query: 190 KFTVCGDIHGQFYDLMNIFEL------NGLP-SPDNPYL-FNGDFVDRGSFSVECIFTLF 241
K+ + GDIHG + + + E +GLP PD L F GD DRG S+ I
Sbjct: 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMI--EI 59
Query: 242 GFKLLYPNHFFMARGNHESAYMNQIY------------GFEGEV-------KSKYTDLMA 282
++L+ + GNH N++Y G E V K +
Sbjct: 60 VWELVEKKAAYYVPGNH----CNKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKE 115
Query: 283 QFFTEVYNWLPLCHCI-NNKVLVMHGGL 309
+F T +Y PL H + +++V H G+
Sbjct: 116 KFIT-LYEQAPLYHILDEGRLVVAHAGI 142
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 41.0 bits (94), Expect = 0.001
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 25 KEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----AIYYANRSFAYLK 80
K ++++ + ++ Y +A+ELY A+E++P A
Sbjct: 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179
Query: 81 TEAIGYALNDASKAIELD-QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
AL KA++L+ +A Y+ LGK++ AL YE + P++ +A
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239
Query: 140 AKFTEC 145
Sbjct: 240 YNLALL 245
Score = 40.6 bits (93), Expect = 0.001
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT--AIYYANRSFAYLKTEAIGYA 87
AE L Y +A+EL A+ ++P A + A
Sbjct: 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEA 149
Query: 88 LNDASKAIELDQTYTK---AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136
L KA+ELD + A A +LG+++ AL E K P+D
Sbjct: 150 LELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD 201
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 40.1 bits (94), Expect = 0.001
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 193 VCGDIHGQFYDLMN-IFELNGLPSPDNPYLFN-GDFVDRGSFSVECIFTLFGFKLLYPNH 250
+ GDIHG F LM + P D L + GD +DRG S+ C+ +LL +
Sbjct: 21 LVGDIHGCFEQLMRKLRHCRFDPWRD--LLISVGDLIDRGPQSLRCL------QLLEEHW 72
Query: 251 FFMARGNHE 259
RGNHE
Sbjct: 73 VRAVRGNHE 81
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
+A Y AY LG ++ AL YE + PN+
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTA 68
AE L ++K Y +A+E Y A+E++P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 37.7 bits (87), Expect = 0.009
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 193 VCGDIHGQFYDLMNIF-ELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHF 251
V DIHG++ L+ I ++N P+ +F GD+VDRG S + + +F + ++
Sbjct: 5 VVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDL-MSNDDNV 63
Query: 252 FMARGNHESAYMNQI 266
GNH+ + N +
Sbjct: 64 VTLLGNHDDEFYNIM 78
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 37.4 bits (87), Expect = 0.012
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Query: 23 APKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTE 82
P+++S+ A L+ +A+ L +AI P A K +
Sbjct: 63 NPEDLSIAKLATALYLRGDADS--------SLAVLQKSAI-AYPKDRELLA---AQGKNQ 110
Query: 83 A----IGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136
G A++ KA L T +A+ AA LG+F A R Y + PN+
Sbjct: 111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 37.3 bits (87), Expect = 0.012
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 22/140 (15%)
Query: 190 KFTVCGDIHGQFYDLMNIFELNG-----LPSPDNP----YLFNGDFVDRGSFSVECIFTL 240
F + GD+HG + +L + E G + + +P +F GD VDRG S E + +
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLV 61
Query: 241 FGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQF----------FTEVYN 290
++ GNH++ ++ G ++ + +AQ E Y
Sbjct: 62 MS--MVAAGAALCVPGNHDNKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYE 119
Query: 291 WLPLCHCINN-KVLVMHGGL 309
LP ++ K++V H G+
Sbjct: 120 SLPSHLVLDEGKLVVAHAGI 139
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 33.4 bits (77), Expect = 0.021
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 33/96 (34%)
Query: 40 AEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99
A A + Y++A+ AA+ P A
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYP----------------------LAAE------- 32
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
A A + G+ A A A P+D
Sbjct: 33 ----ALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
Score = 28.4 bits (64), Expect = 1.7
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A A + G + AL EA P +A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA 33
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 36.3 bits (85), Expect = 0.023
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 26/129 (20%)
Query: 195 GDIHGQFYDLMNIFELNGLPSPDNPYL-FNGDFVDRGSFSVECIFTLFGFKLLYPNHFFM 253
GDI G + +L + E P L GD V+RG S+E + + +
Sbjct: 5 GDIQGCYDELQRLLEKIN-FDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKT 59
Query: 254 ARGNHE----SAYMNQIYGFEGEVKSKYTDLMAQFFT-----EVYNWL---PLCHCINNK 301
GNH+ + G K K D + E+ +WL PL H
Sbjct: 60 VLGNHDLHLLAVA-------AGIKKPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPEL 112
Query: 302 VLVM-HGGL 309
++M H G+
Sbjct: 113 GILMVHAGI 121
>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat.
Length = 34
Score = 32.6 bits (75), Expect = 0.027
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 93 KAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123
KA+ELD +AYY A ++LG++ AL+
Sbjct: 4 KALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
function prediction only].
Length = 297
Score = 35.9 bits (83), Expect = 0.037
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
+ELD TY A+ R A G++KLA D A ++ PND
Sbjct: 126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 35.9 bits (83), Expect = 0.046
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 190 KFTVC-GDIHGQFYDLMNIFELNGLPSPDNP-------YLFNGDFVDRGSFSVECIFTLF 241
+ +C GDIHG L N++ LN L S P +F GD+ DRG + + I L
Sbjct: 2 RVVICVGDIHGYISKLNNLW-LN-LQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLI 59
Query: 242 GFKLLYPN--HFFMARGNHESAY 262
+P H F+ GNH+ A+
Sbjct: 60 SLPEKHPKQRHVFLC-GNHDFAF 81
>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat.
Length = 44
Score = 32.1 bits (73), Expect = 0.051
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A A A ++LG AL P+D +A
Sbjct: 2 AALLALARALLALGDLDEALALLRRALALDPDDPEA 37
>gnl|CDD|115680 pfam07042, TrfA, TrfA protein. This family consists of several
bacterial TrfA proteins. The trfA operon of
broad-host-range IncP plasmids is essential to activate
the origin of vegetative replication in diverse species.
The trfA operon encodes two ORFs. The first ORF is
highly conserved and encodes a putative single-stranded
DNA binding protein (Ssb). The second, trfA, contains
two translational starts as in the IncP alpha plasmids,
generating related polypeptides of 406 (TrfA1) and 282
(TrfA2) amino acids. TrfA2 is very similar to the IncP
alpha product, whereas the N-terminal region of TrfA1
shows very little similarity to the equivalent region of
IncP alpha TrfA1. This region has been implicated in the
ability of IncP alpha plasmids to replicate efficiently
in Pseudomonas aeruginosa.
Length = 282
Score = 35.0 bits (80), Expect = 0.071
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 91 ASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150
A K E Q + ++ M L F +A + H A PND A FT NK +
Sbjct: 10 AEKVSEAKQAALLKHTKQQIKDMQLSLFDIA--PWPDSHAALPNDFARSAIFTTRNKKIP 67
Query: 151 RMQIKGKLHRKYAYRILMDIKALFM------TQDSLVHITVEDEAKFTVCGD-IHGQFYD 203
R ++GK + + D++ + D LV V + AK T G+ I FY+
Sbjct: 68 REALQGKS----IFHVNKDVEITYTGIELRADDDELVFAQVLEYAKGTAIGEPISFTFYE 123
Query: 204 L 204
L
Sbjct: 124 L 124
>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF. Members of
this protein family are the product of one of seven
genes regularly clustered in operons to encode the
proteins of the tol-pal system, which is critical for
maintaining the integrity of the bacterial outer
membrane. The gene for this periplasmic protein has been
designated orf2 and ybgF. All members of the seed
alignment were from unique tol-pal gene regions from
completed bacterial genomes. The architecture of this
protein is a signal sequence, a low-complexity region
usually rich in Asn and Gln, a well-conserved region
with tandem repeats that resemble the tetratricopeptide
(TPR) repeat, involved in protein-protein interaction.
Length = 117
Score = 33.4 bits (77), Expect = 0.083
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 32/99 (32%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTY 101
A K Y AI+ + A ++ P + Y N
Sbjct: 7 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPN---------------------------- 38
Query: 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
A+Y AY + G + A + + AV K P K KA
Sbjct: 39 --AHYWLGEAYYAQGDYADAAKAFLAVVKKYP--KSPKA 73
>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat.
Length = 73
Score = 31.8 bits (73), Expect = 0.12
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 77 AYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136
YL+ E AL + + L R Y LG F+ AL D E + P+
Sbjct: 4 IYLREEDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAP 63
Query: 137 DA 138
DA
Sbjct: 64 DA 65
>gnl|CDD|147786 pfam05823, Gp-FAR-1, Nematode fatty acid retinoid binding protein
(Gp-FAR-1). Parasitic nematodes produce at least two
structurally novel classes of small helix-rich retinol-
and fatty-acid-binding proteins that have no
counterparts in their plant or animal hosts and thus
represent potential targets for new nematicides.
Gp-FAR-1 is a member of the nematode-specific
fatty-acid- and retinol-binding (FAR) family of proteins
but localises to the surface of the organism, placing it
in a strategic position for interaction with the host.
Gp-FAR-1 functions as a broad-spectrum retinol- and
fatty-acid-binding protein, and it is thought that it is
involved in the evasion of primary host plant defence
systems.
Length = 154
Score = 32.7 bits (75), Expect = 0.19
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 24 PKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAI-EVNPTAIYYANRSFAYLKTE 82
P EV K + KA E KN K + AA+ E +P+ A + A LK +
Sbjct: 11 PAEVVEAYKSLTPEEKAALKEVAKNHKKFKNEDEALAALKEKSPSLYAKAEKLRALLKKK 70
Query: 83 AIGYALNDASKAI--ELDQTYTKAYYRRAAAY-MSLGKFKLALRDYEAVHKARPND--KD 137
AL+ +KA ++ K + + A SL + K + Y A +KA + ++
Sbjct: 71 I--DALSPEAKAFVKKVIAKGRKLHAQSLAGEKPSLEELKELAKGYIAKYKALSEEAKEE 128
Query: 138 AKAKFTECNKIVKRMQIK 155
K F K + + +
Sbjct: 129 LKKTFPILTKFFQNEKFQ 146
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 33.2 bits (77), Expect = 0.24
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 195 GDIHGQFYDLMNIFELNGLPSPDNPYL-FNGDFVDRGSFSVECIFTLFGFKLLYPNHFFM 253
GDI G + +L + E P L GD V+RG S+E + + +
Sbjct: 7 GDIQGCYDELQRLLEKIDF-DPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG----DSAVT 61
Query: 254 ARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFT-----EVYNWL---PLCHCINNKVLVM 305
GNH+ + G + ++K D + E+ +WL PL H LVM
Sbjct: 62 VLGNHDLHLLAVAAGIK---RNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVM 118
Query: 306 -HGGL 309
H G+
Sbjct: 119 VHAGI 123
>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
regulatory metabolite of stress conditions. It is
hydrolyzed to two ADP by this enzyme. Alternate names
include diadenosine-tetraphosphatase and Ap4A hydrolase
[Cellular processes, Adaptations to atypical
conditions].
Length = 279
Score = 33.3 bits (76), Expect = 0.24
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 195 GDIHGQFYDLMNIFE-LNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFM 253
GD+HG + +L + E + P D +L GD V RG S+E L K L + +
Sbjct: 7 GDLHGCYDELQALLERVEFDPGQDTLWL-TGDLVARGPGSLEV---LRYVKSL-GDAVRL 61
Query: 254 ARGNHESAYMNQIYGFEGEVKSKYTD-----LMAQFFTEVYNWL---PLCHCINNKVLVM 305
GNH+ ++ + F G ++K D L A E+ NWL PL K LVM
Sbjct: 62 VLGNHD---LHLLAVFAGISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVM 118
Query: 306 -HGGL 309
H G+
Sbjct: 119 AHAGI 123
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PMID:8973346) and PilW in ref (PMID:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 33.1 bits (76), Expect = 0.26
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 77 AYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136
YL+ + A + KA+E D AY A Y LG+ + A + PN+
Sbjct: 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99
Query: 137 DA 138
D
Sbjct: 100 DV 101
>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 250
Score = 32.4 bits (74), Expect = 0.52
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 93 KAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137
KA+E D +Y A+ RA Y LG+ LA Y PN+ D
Sbjct: 60 KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD 104
>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional.
Length = 296
Score = 32.2 bits (74), Expect = 0.58
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
+ELD TY AY R A G+++LA D A ++ PND
Sbjct: 124 VLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 30.0 bits (68), Expect = 0.60
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 67 TAIYYANRSFAYLK----TEAIGY---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFK 119
A N + + EA+ AL A + E +A A Y++LG +
Sbjct: 4 LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
Query: 120 LALRDYEAVHKARPN 134
AL E R
Sbjct: 64 EALEYLEKALALREA 78
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 27.8 bits (63), Expect = 1.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAV 128
+AYY Y+ LG ++ A YE
Sbjct: 2 RAYYLLGQIYLQLGDYEEAKEYYEKA 27
>gnl|CDD|205403 pfam13222, DUF4030, Protein of unknown function (DUF4030). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 164 and 197 amino
acids in length.
Length = 142
Score = 30.1 bits (68), Expect = 1.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 11 LSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV 64
L++ + N+S+P KE +K++ E N K + K IE S IE+
Sbjct: 89 LTIDTKINSSDPGAKEF-------GKKIEKEVNNLLKTEEVKKWIENDSYTIEI 135
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 30.5 bits (70), Expect = 1.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 22 PAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP 66
P+ K E +ER E+ +A E + ++A E + A+++ P
Sbjct: 83 PSKKGTEEERRERREENLEKALELLREGNRSEARECFQRAVDITP 127
>gnl|CDD|222122 pfam13429, TPR_15, Tetratricopeptide repeat.
Length = 279
Score = 30.7 bits (70), Expect = 2.0
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 29/125 (23%)
Query: 28 SVEDKERAEK----LKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEA 83
S+ +E AE+ L A A + + + A+ Y A+ + P A+ A
Sbjct: 134 SLTPEEAAEQSAGFLSARAEYYRQTGQPDAALRDYRRALALPP-----ASSDLR----AA 184
Query: 84 IGYALNDASKAIEL-------------DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHK 130
+ + L D + EL D + AAAY+ LG+ K AL K
Sbjct: 185 LLWLLIDLGRRAELKRLLAAWRGRAESDSALWGPF---AAAYLLLGRPKKALPYLRRQAK 241
Query: 131 ARPND 135
+ PND
Sbjct: 242 SNPND 246
Score = 30.4 bits (69), Expect = 2.4
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY--RRAAAYMSLGKFKLALRDY 125
A+Y R+ Y + + L + +Q+ A + RA Y G+ ALRDY
Sbjct: 115 ALYLYTRAGDYKRIVDL---LASLTPEEAAEQS---AGFLSARAEYYRQTGQPDAALRDY 168
Query: 126 EAVHKARPNDKDAKA 140
P D +A
Sbjct: 169 RRALALPPASSDLRA 183
>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat.
Length = 33
Score = 27.1 bits (61), Expect = 2.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
A Y+ A AY+ LG A E + K P+
Sbjct: 1 DALYKLALAYLKLGDTDEAKEALERLLKRYPDS 33
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 29.9 bits (68), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 195 GDIHGQFYDLMNIFELNGL-------PSPDNPYLFNGDFVDRG 230
GDIHG L+ + G P+ +F GD +DRG
Sbjct: 5 GDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRG 47
>gnl|CDD|234973 PRK01712, PRK01712, carbon storage regulator; Provisional.
Length = 64
Score = 27.6 bits (62), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 23 APKEVSVEDKERAEKLKAEANEHFKNQ 49
APKEVSV +E ++++AE + K
Sbjct: 36 APKEVSVHREEIYQRIQAENSTALKQS 62
>gnl|CDD|237480 PRK13721, PRK13721, conjugal transfer ATP-binding protein TraC;
Provisional.
Length = 844
Score = 30.1 bits (68), Expect = 3.5
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 82 EAIGYALNDASKAIELDQTY---TKAYYRRAAAYMSLGKFKLA--------LRDYEA-VH 129
+ I Y L + S + E + + T+AYY RAA L +F L LR Y +
Sbjct: 78 DRIEYGLREFSWSGEQAERFNAITRAYYMRAA----LTQFPLPEGMNLPLTLRHYRVFIS 133
Query: 130 KARPNDKDAKAKFTECNKIVKRM 152
P+ K ++A E +VK +
Sbjct: 134 YCSPSKKKSRADILEMENLVKII 156
>gnl|CDD|173250 PRK14789, PRK14789, lipoprotein signal peptidase; Provisional.
Length = 191
Score = 29.2 bits (65), Expect = 3.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 328 QPPDEGLMCELLWSDPQIPNGRAPSKR 354
+P D+ L+ ELL DP P
Sbjct: 159 EPIDDELLSELLSRDPSPPAATDARTS 185
>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
Found in the DNRI/REDD/AFSR family of regulators. This
region of AFSR along with the C terminal region is
capable of independently directing actinorhodin
production. This family contains TPR repeats.
Length = 145
Score = 28.8 bits (65), Expect = 4.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 96 ELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133
L + +A A A ++LG+ + AL E + P
Sbjct: 55 RLRELRLEALEALAEALLALGRHEEALALLERLLALDP 92
>gnl|CDD|153354 cd07670, BAR_SNX18, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 18. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX18 is localized to peripheral
endosomal structures, and acts in a trafficking pathway
that is clathrin-independent but relies on AP-1 and
PACS1. BAR domains form dimers that bind to membranes,
induce membrane bending and curvature, and may also be
involved in protein-protein interactions.
Length = 207
Score = 29.1 bits (65), Expect = 5.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 60 AAIEVNPTAIYYANRSFAYLKTE--AIGYALNDASKAIELDQTYTKAYYRRAAAY 112
+ +++N TA +A + K E +G + S+A ELDQ A +A A+
Sbjct: 27 SVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAF 81
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 29.3 bits (66), Expect = 6.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
Query: 366 KAFLERNKLEYIIRSHE------------VKQDGYEVAHDGRCITVFSAP 403
K+ ++++L Y+ SH+ V + G EV G C VF+AP
Sbjct: 469 KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG-EVVEQGDCERVFAAP 517
>gnl|CDD|225464 COG2912, COG2912, Uncharacterized conserved protein [Function
unknown].
Length = 269
Score = 28.8 bits (65), Expect = 6.3
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIY---YANRSFAYLKTEAIGYALN 89
+L+ A + + + + I N A L+ AL
Sbjct: 147 LSQHELQEWLKGTIGPSA--ELLPEDLK--QASNREILSRLLRNLKAALLRELQWELALR 202
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A + ++L+ R Y LG + +AL D + P+D A
Sbjct: 203 VAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 28.8 bits (65), Expect = 6.7
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 34/137 (24%)
Query: 61 AIEVNPTAIYYANRSFAYLKTEAIGYALNDAS---KAIELDQTYTKAYYRRA-------- 109
AI++NP A+ Y + LN + I D A
Sbjct: 216 AIDINPDAVEYLKENI----------RLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265
Query: 110 -AAYMSLGKFKLALRD------YEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHR-- 160
+A+ L L+D YE V + ++ K + K ++ K+ R
Sbjct: 266 KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV-EVLKVRRVK 324
Query: 161 KYA---YRILMDIKALF 174
Y+ Y +++D++ L
Sbjct: 325 SYSPGVYHVVVDLRVLK 341
>gnl|CDD|129630 TIGR00539, hemN_rel, putative oxygen-independent coproporphyrinogen
III oxidase. Experimentally determined examples of
oxygen-independent coproporphyrinogen III oxidase, an
enzyme that replaces HemF function under anaerobic
conditions, belong to a family of proteins described by
the model hemN. This model, hemN_rel, models a closely
related protein, shorter at the amino end and lacking
the region containing the motif PYRT[SC]YP found in
members of the hemN family. Several species, including
E. coli, Helicobacter pylori, Aquifex aeolicus, and
Chlamydia trachomatis, have members of both this family
and the E. coli hemN family. The member of this family
from Bacillus subtilis was shown to complement an
hemF/hemN double mutant of Salmonella typimurium and to
prevent accumulation of coproporphyrinogen III under
anaerobic conditions, but the exact role of this protein
is still uncertain. It is found in a number of species
that do not synthesize heme de novo [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 360
Score = 29.1 bits (65), Expect = 7.0
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 21/170 (12%)
Query: 5 YLSLEYLSMSSTTNASNPAPKEVSVE-----DKERAEKLKAEANEHFKNQAYNKAIELYS 59
+LS LS+ TN A K + D+ E L+ + ++ Y KA
Sbjct: 183 HLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAKA----- 237
Query: 60 AAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMS----- 114
+V Y+ + + A G N+ A +L + Y K +R ++
Sbjct: 238 -GYQVKHNLAYWGAKDYLGCGAGAHGCVANERFFAKKLIKNYIKDPLQRGVETLNEKNVP 296
Query: 115 -----LGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLH 159
L K L LR V K+ ++ ++ + K +L
Sbjct: 297 KQDKRLEKLFLGLRCVLGVEKSFFDENKGLSQVKFLIEENKAFIKNNRLI 346
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 28.1 bits (63), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 30 EDK-ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP 66
ED +R+ L + N ++KA+E Y A+E+NP
Sbjct: 66 EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103
>gnl|CDD|219523 pfam07697, 7TMR-HDED, 7TM-HD extracellular. This entry
represents the extracellular domain of the 7TM-HD (7TM
Receptors with HD hydrolase).
Length = 218
Score = 28.4 bits (64), Expect = 7.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 23 APKEVSVEDKERAEKLKAEA 42
AP+++ V D+E E+ + EA
Sbjct: 13 APRDIEVVDEEATEEKRKEA 32
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 28.8 bits (65), Expect = 8.4
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 191 FTVCGDIHGQFYDLMNI-----FELNGLPSPDNPY---------LFNGDFVDRGSFSVEC 236
F + GD+HG +L + +++ +F GD VDRG S
Sbjct: 182 FDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPGV 241
Query: 237 IFTLFGFKLLYPNHFFMARGNHE 259
+ + G ++ GNH+
Sbjct: 242 LRLVMG--MVAAGTALCVPGNHD 262
>gnl|CDD|239141 cd02678, MIT_VPS4, MIT: domain contained within Microtubule
Interacting and Trafficking molecules. This sub-family
of MIT domains is found in intracellular protein
transport proteins of the AAA-ATPase family. The
molecular function of the MIT domain is unclear.
Length = 75
Score = 26.5 bits (59), Expect = 10.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYY 71
++A +L +A E Y +A+ LY A+E A+ Y
Sbjct: 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKY 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,102,519
Number of extensions: 2775596
Number of successful extensions: 2466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2385
Number of HSP's successfully gapped: 118
Length of query: 546
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 444
Effective length of database: 6,413,494
Effective search space: 2847591336
Effective search space used: 2847591336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.3 bits)