RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11688
(546 letters)
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 629 bits (1625), Expect = 0.0
Identities = 270/465 (58%), Positives = 323/465 (69%), Gaps = 57/465 (12%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
+RAE+LK +AN++FK + Y AI+ YS AIE+NP+ AIYY NRS AYL+TE GYAL
Sbjct: 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 61
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149
DA++AIELD+ Y K YYRRAA+ M+LGKF+ ALRDYE V K +P+DKDAK K+ ECNKIV
Sbjct: 62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121
Query: 150 KRMQI---------------------------------------------------KGK- 157
K+ K
Sbjct: 122 KQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKK 181
Query: 158 LHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPD 217
LHRK AY+IL+ +K + +LV T+++ K TVCGD HGQFYDL+NIFELNGLPS
Sbjct: 182 LHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSET 241
Query: 218 NPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKY 277
NPY+FNGDFVDRGSFSVE I TLFGFKLLYP+HF + RGNHE+ MNQIYGFEGEVK+KY
Sbjct: 242 NPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKY 301
Query: 278 TDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCE 337
T M + F+EV+ WLPL CIN KVL+MHGGLFS D VTL+DIR I+RNRQPPD G MC+
Sbjct: 302 TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCD 361
Query: 338 LLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCI 397
LLWSDPQ NGR+ SKRGV FGPDVTKAFLE N L+YIIRSHEVK +GYEVAH GRC+
Sbjct: 362 LLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCV 421
Query: 398 TVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEPAL 442
TVFSAPNYCD +GNK ++I ++G D+ P F + AV P P +
Sbjct: 422 TVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAV----PHPNV 462
Score = 92.1 bits (229), Expect = 6e-20
Identities = 55/138 (39%), Positives = 72/138 (52%), Gaps = 42/138 (30%)
Query: 440 PALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDIKK-----KKILNLDFTQ----- 489
P LE+ KVT+ FM +LMQ YK Q KLHRK AY+IL+ +K+ ++ +
Sbjct: 157 PKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKIT 216
Query: 490 ----------------------------LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFF 521
+FNGDFVDRGSFSVE I TLFGFKLLYP+HF
Sbjct: 217 VCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 276
Query: 522 MARV--EC--IFTLFGFK 535
+ R E + ++GF+
Sbjct: 277 LLRGNHETDNMNQIYGFE 294
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 481 bits (1240), Expect = e-169
Identities = 196/310 (63%), Positives = 237/310 (76%), Gaps = 4/310 (1%)
Query: 133 PNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFT 192
P +D K + ++++ + + KLHRK AY+IL+ +K + +LV T+++ K T
Sbjct: 4 PKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKIT 63
Query: 193 VCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFF 252
VCGD HGQFYDL+NIFELNGLPS NPY+FNGDFVDRGSFSVE I TLFGFKLLYP+HF
Sbjct: 64 VCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 123
Query: 253 MARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSS 312
+ RGNHE+ MNQIYGFEGEVK+KYT M + F+EV+ WLPL CIN KVL+MHGGLFS
Sbjct: 124 LLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSE 183
Query: 313 DNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERN 372
D VTL+DIR I+RNRQPPD G MC+LLWSDPQ NGR+ SKRGV FGPDVTKAFLE N
Sbjct: 184 DGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEEN 243
Query: 373 KLEYIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEA 432
L+YIIRSHEVK +GYEVAH GRC+TVFSAPNYCD +GNK ++I ++G D+ P F + A
Sbjct: 244 NLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTA 303
Query: 433 VGVSPPEPAL 442
V P P +
Sbjct: 304 V----PHPNV 309
Score = 93.0 bits (232), Expect = 4e-21
Identities = 55/138 (39%), Positives = 72/138 (52%), Gaps = 42/138 (30%)
Query: 440 PALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDIKK-----KKILNLDFTQ----- 489
P LE+ KVT+ FM +LMQ YK Q KLHRK AY+IL+ +K+ ++ +
Sbjct: 4 PKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKIT 63
Query: 490 ----------------------------LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFF 521
+FNGDFVDRGSFSVE I TLFGFKLLYP+HF
Sbjct: 64 VCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 123
Query: 522 MARV--EC--IFTLFGFK 535
+ R E + ++GF+
Sbjct: 124 LLRGNHETDNMNQIYGFE 141
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 460 bits (1187), Expect = e-161
Identities = 141/301 (46%), Positives = 182/301 (60%), Gaps = 13/301 (4%)
Query: 146 NKIVKRMQIKGK-LHRKYAYRILMDIKALFMTQDSLVHI--TVEDEAKFTVCGDIHGQFY 202
+K+V + +KGK L +KY I+ LF + S+V + + K +VCGD HGQFY
Sbjct: 18 SKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFY 77
Query: 203 DLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAY 262
D++N+F G P + YLFNGDFVDRGS+S E + K+L+PN+FF+ RGNHES
Sbjct: 78 DVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDN 137
Query: 263 MNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRT 322
MN+IYGFE E K KY+ + F + + LPL INN LVMHGGL S + TL D +
Sbjct: 138 MNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKN 197
Query: 323 IDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHE 382
IDR QPP +G ELLW+DPQ NG PS+RG+G FGPD+T FL NKL I RSHE
Sbjct: 198 IDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDITDRFLRNNKLRKIFRSHE 257
Query: 383 VKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITM----------KGKDMVPHFTTYEA 432
++ G + G+ +TVFSAPNYCDS GN G I + + D T+EA
Sbjct: 258 LRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLIIETFEA 317
Query: 433 V 433
V
Sbjct: 318 V 318
Score = 76.9 bits (190), Expect = 2e-15
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 45/136 (33%)
Query: 445 DKVTLKFMTDLM-QTYKAQGKLHRKYAYRILMDIKK-----KKILNLDFTQ--------- 489
++ +F++ ++ + L +KY I+ ++ L+
Sbjct: 10 KNMSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVC 69
Query: 490 --------------------------LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMA 523
LFNGDFVDRGS+S E + K+L+PN+FF+
Sbjct: 70 GDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLN 129
Query: 524 RV--EC--IFTLFGFK 535
R E + ++GF+
Sbjct: 130 RGNHESDNMNKIYGFE 145
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 338 bits (869), Expect = e-113
Identities = 110/269 (40%), Positives = 165/269 (61%), Gaps = 8/269 (2%)
Query: 165 RILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNG 224
+ + + +F++Q L+ + EA +CGDIHGQ+YDL+ +FE G P P++ YLF G
Sbjct: 36 GLCLKSREIFLSQPILLEL----EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 90
Query: 225 DFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQF 284
D+VDRG S+E I L +K+ YP +FF+ RGNHE A +N+IYGF E K +Y + +
Sbjct: 91 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 150
Query: 285 FTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDP- 343
FT+ +N LP+ ++ K+ HGGL S D ++E IR I R PD+GL+C+LLWSDP
Sbjct: 151 FTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPD 209
Query: 344 QIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAP 403
+ G + RGV FG +V FL ++ L+ I R+H+V +DGYE + +T+FSAP
Sbjct: 210 KDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAP 269
Query: 404 NYCDSVGNKGAFITMKGKDMVPHFTTYEA 432
NYC N GA +++ + ++ F +
Sbjct: 270 NYCGEFDNAGAMMSV-DETLMCSFQILKP 297
Score = 61.4 bits (150), Expect = 2e-10
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARV--EC--IFTLFGF 534
LF GD+VDRG S+E I L +K+ YP +FF+ R EC I ++GF
Sbjct: 87 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGF 135
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 338 bits (870), Expect = e-113
Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 8/298 (2%)
Query: 137 DAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVCGD 196
D K E ++ ++++ +L + K + + ++ + TVCGD
Sbjct: 2 DEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEV----RCPVTVCGD 57
Query: 197 IHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARG 256
+HGQF+DLM +F + G PD YLF GD+VDRG +SVE + L K+ Y + RG
Sbjct: 58 VHGQFHDLMELFRIGGKS-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRG 116
Query: 257 NHESAYMNQIYGFEGEVKSKYTDLMA-QFFTEVYNWLPLCHCINNKVLVMHGGLFSSDNV 315
NHES + Q+YGF E KY + ++FT+++++LPL ++ ++ +HGGL S
Sbjct: 117 NHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL-SPSID 175
Query: 316 TLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTKAFLERNKLE 375
TL+ IR +DR ++ P EG MC+LLWSDP G S RG G FG D+++ F N L
Sbjct: 176 TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLT 235
Query: 376 YIIRSHEVKQDGYEVAHDGRCITVFSAPNYCDSVGNKGAFITMKGKDMVPHFTTYEAV 433
+ R+H++ +GY HD +T+FSAPNYC GN+ A + + + F ++
Sbjct: 236 LVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPA 292
Score = 60.7 bits (148), Expect = 2e-10
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARV--EC--IFTLFGF 534
LF GD+VDRG +SVE + L K+ Y + R E I ++GF
Sbjct: 81 LFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGF 129
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 339 bits (871), Expect = e-113
Identities = 110/270 (40%), Positives = 165/270 (61%), Gaps = 8/270 (2%)
Query: 165 RILMDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNG 224
+ + + +F++Q L+ + EA +CGDIHGQ+YDL+ +FE G P P++ YLF G
Sbjct: 37 GLCLKSREIFLSQPILLEL----EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 91
Query: 225 DFVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQF 284
D+VDRG S+E I L +K+ YP +FF+ RGNHE A +N+IYGF E K +Y + +
Sbjct: 92 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKT 151
Query: 285 FTEVYNWLPLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDP- 343
FT+ +N LP+ ++ K+ HGGL S D ++E IR I R PD+GL+C+LLWSDP
Sbjct: 152 FTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPD 210
Query: 344 QIPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFSAP 403
+ G + RGV FG +V FL ++ L+ I R+H+V +DGYE + +T+FSAP
Sbjct: 211 KDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAP 270
Query: 404 NYCDSVGNKGAFITMKGKDMVPHFTTYEAV 433
NYC N GA +++ + ++ F +
Sbjct: 271 NYCGEFDNAGAMMSV-DETLMCSFQILKPA 299
Score = 61.1 bits (149), Expect = 2e-10
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARV--EC--IFTLFGF 534
LF GD+VDRG S+E I L +K+ YP +FF+ R EC I ++GF
Sbjct: 88 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGF 136
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 333 bits (857), Expect = e-111
Identities = 112/325 (34%), Positives = 169/325 (52%), Gaps = 36/325 (11%)
Query: 130 KARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEA 189
+P KA + G+L A RI+ + ++ + +L+ I +A
Sbjct: 25 DGKPRVDILKAHLMKE----------GRLEESVALRIITEGASILRQEKNLLDI----DA 70
Query: 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN 249
TVCGDIHGQF+DLM +FE+ G P + YLF GD+VDRG FS+EC+ L+ K+LYP
Sbjct: 71 PVTVCGDIHGQFFDLMKLFEVGGSP-ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPK 129
Query: 250 HFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGL 309
F+ RGNHE ++ + + F+ E K KY++ + + ++ LPL +N + L +HGGL
Sbjct: 130 TLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL 189
Query: 310 FSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDP--------QIPNGRAPSKRGVGVHFG 361
S + TL+DIR +DR ++PP G MC++LWSDP + + RG +
Sbjct: 190 -SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYS 248
Query: 362 PDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGR------CITVFSAPNYCDSVGNKGAF 415
FL+ N L I+R+HE + GY + + IT+FSAPNY D NK A
Sbjct: 249 YPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAV 308
Query: 416 ITMKGKDMVPHFTTYEAVGVSPPEP 440
+K ++ V + + P P
Sbjct: 309 --LKYENNVMNIRQFNCS----PHP 327
Score = 65.0 bits (159), Expect = 2e-11
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARV--EC--IFTLFGFK 535
LF GD+VDRG FS+EC+ L+ K+LYP F+ R EC + F FK
Sbjct: 101 LFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFK 150
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 327 bits (841), Expect = e-106
Identities = 112/325 (34%), Positives = 169/325 (52%), Gaps = 36/325 (11%)
Query: 130 KARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEA 189
+P KA + G+L A RI+ + ++ + +L+ I +A
Sbjct: 38 DGKPRVDILKAHLMKE----------GRLEESVALRIITEGASILRQEKNLLDI----DA 83
Query: 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN 249
TVCGDIHGQF+DLM +FE+ G P + YLF GD+VDRG FS+EC+ L+ K+LYP
Sbjct: 84 PVTVCGDIHGQFFDLMKLFEVGGSP-ANTRYLFLGDYVDRGYFSIECVLYLWALKILYPK 142
Query: 250 HFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKVLVMHGGL 309
F+ RGNHE ++ + + F+ E K KY++ + + ++ LPL +N + L +HGGL
Sbjct: 143 TLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGL 202
Query: 310 FSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDP--------QIPNGRAPSKRGVGVHFG 361
S + TL+DIR +DR ++PP G MC++LWSDP + + RG +
Sbjct: 203 -SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYS 261
Query: 362 PDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGR------CITVFSAPNYCDSVGNKGAF 415
FL+ N L I+R+HE + GY + + IT+FSAPNY D NK A
Sbjct: 262 YPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAV 321
Query: 416 ITMKGKDMVPHFTTYEAVGVSPPEP 440
+K ++ V + + P P
Sbjct: 322 --LKYENNVMNIRQFNCS----PHP 340
Score = 61.8 bits (150), Expect = 3e-10
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 490 LFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFMARV--EC--IFTLFGFK 535
LF GD+VDRG FS+EC+ L+ K+LYP F+ R EC + F FK
Sbjct: 114 LFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFK 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 174 bits (442), Expect = 4e-52
Identities = 79/146 (54%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 25 KEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEA 83
+ + +RAE+LK +AN++FK + Y AI+ YS AIE+NP+ AIYY NRS AYL+TE
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 62
Query: 84 IGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFT 143
GYAL DA++AIELD+ Y K YYRRAA+ M+LGKF+ ALRDYE V K +P+DKDAK K+
Sbjct: 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122
Query: 144 ECNKIVKRMQIKGKLHRKYAYRILMD 169
ECNKIVK+ + + R ++D
Sbjct: 123 ECNKIVKQKAFERAIAGDEHKRSVVD 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 165 bits (421), Expect = 3e-49
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 14 SSTTNASNPAPKEV--SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT---- 67
SS S P E + E+L+ E NE FK Y A+ Y+ A+ ++ T
Sbjct: 5 SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ 64
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
A+ + NR+ +LK E A +ASKAIE D KA YRR+ A LG+ A+ D +
Sbjct: 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124
Query: 128 VHKARPNDKDAKAKFTECNK 147
P +K + +
Sbjct: 125 CVSLEPKNKVFQEALRNISG 144
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 159 bits (405), Expect = 3e-47
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
+ E A++ K + NE+FK Y A+ Y+ A++ +P AI Y+NR+ K AL+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147
D I LD + K Y R+AA +++ ++ A R YE + P++++A+ C +
Sbjct: 69 DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 156 bits (396), Expect = 8e-46
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYAL 88
+ + A +K + NE F+ Y +A++ Y+ AI+ NP A Y+NR+ Y K AL
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 89 NDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147
D + I+L+ T+ K Y R+AAA ++ + A+ Y+ + K+A + C
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 155 bits (395), Expect = 1e-45
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 22 PAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLK 80
P E ED AE+LK E NE K + + A+ Y AIE+NP A+Y+ NR+ AY K
Sbjct: 2 PLGSE---EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK 58
Query: 81 TEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
A+ D +AI +D Y+KAY R A SL K A+ Y+ + P+++ K+
Sbjct: 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118
Query: 141 KFTECNKIVK 150
++
Sbjct: 119 NLKIAELKLR 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 155 bits (393), Expect = 1e-45
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
E+ +LK + N+ + A++ YS AI+++P + Y+NRS AY K A D
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNK 147
K ++L + K Y R+AAA L +F+ A R YE K N+ K
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 154 bits (392), Expect = 7e-45
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 23 APKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKT 81
P+ S+ ++KLK+E N + Y+KAI+LY+ A+ + P IY +NR+ AY +
Sbjct: 1 GPR--SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58
Query: 82 EAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
A DA A +D Y+KA+ R A + +K A YE +A N K
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 142 --FTECNKIVKRMQIKGK 157
+ ++ +
Sbjct: 119 RGLETTKRKIEEANRGAE 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 148 bits (376), Expect = 8e-43
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYAL 88
A++LK + N F + Y +A Y AI NP A+YY NR+ YLK + AL
Sbjct: 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63
Query: 89 NDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA-KAKFTECNK 147
D +A+ELD KA++ + + + A+ + + + + +
Sbjct: 64 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123
Query: 148 IVKRMQ 153
I K+ +
Sbjct: 124 IAKKKR 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 147 bits (373), Expect = 2e-42
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
+AE+ + E E+F + A++ Y+ I+ P A Y+NR+ A K + A+ D
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKR 151
+KAIE D + +AY R+A A +++ ++ AL +A + + E +++ +
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYK 120
Query: 152 MQ 153
Sbjct: 121 AS 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 144 bits (365), Expect = 1e-39
Identities = 41/244 (16%), Positives = 74/244 (30%), Gaps = 59/244 (24%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
A++LK + N F + Y +A Y AI NP A+YY NR+ YLK + AL D +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA-KAKFTECNKIVKRM 152
A+ELD KA++ + + + A+ + + + + +I K+
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 153 -------------------------------------------------QIKGKLHRKYA 163
+ + K+
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 164 YRILMDIKALFMTQDSLVHITVEDEAKFTVCGDI--------HGQFYDLMNIFELNGLPS 215
+ + + + D + ++ G YD +I E
Sbjct: 184 KYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG 243
Query: 216 PDNP 219
NP
Sbjct: 244 HFNP 247
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 130 bits (328), Expect = 4e-36
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
++A K K N+ +K + ++ A++ Y A E++PT Y N++ Y +
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 92 SKAIELD-------QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTE 144
KAIE+ + KAY R +Y K+K A+ Y A D K +
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS-LAEHRTPDVLKKCQQ 120
Query: 145 CNKIVKRMQ 153
KI+K +
Sbjct: 121 AEKILKEQE 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 122 bits (307), Expect = 3e-33
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY 86
S + A K N +K + + KA Y AIE++P+ +Y N++ Y + +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 87 ALNDASKAIELD-------QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
+ KA+E+ + KA R A+ LA++ + + +
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119
Query: 140 AKFTECNK 147
K E K
Sbjct: 120 KKVKELEK 127
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 123 bits (311), Expect = 7e-33
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 18/150 (12%)
Query: 26 EVSVEDK-ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----------------- 67
+ + E+K + A +K E NE FK N+AI Y A++
Sbjct: 28 DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
N + Y K + A++ ASK +++D+ KA Y+ A M G + A +
Sbjct: 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147
Query: 128 VHKARPNDKDAKAKFTECNKIVKRMQIKGK 157
PN+ D + + C +K + K K
Sbjct: 148 AASLNPNNLDIRNSYELCVNKLKEARKKDK 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 120 bits (303), Expect = 3e-32
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 21/151 (13%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-------------------AIY 70
+ + E L+ + NE F + Y +AI+ Y A+ T
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 71 YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHK 130
YAN S YL + A +S+ ++ ++T KA +RRA A ++ K A D + + +
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 131 ARPNDKDAKAKFTECNKIVKRMQIKGKLHRK 161
P A+ E + +R K R
Sbjct: 126 NHPAAASVVAR--EMKIVTERRAEKKADSRV 154
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 116 bits (293), Expect = 2e-31
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 3/109 (2%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
+ EK K + N FK Y +A+ Y I P + Y+N++ A +K A+
Sbjct: 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDY-EAVHKARPNDKDAK 139
+ + T R Y L + A+ V + +
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYD 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 121 bits (305), Expect = 9e-31
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT----------------AIYYAN 73
E E++ +K +FK Y +A+ Y + + N
Sbjct: 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201
Query: 74 RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133
+ +LK +A A+ +KA+ELD K RR A++++ F+LA D++ V + P
Sbjct: 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261
Query: 134 NDKDAKAKFTECNKIVKRMQIKGK 157
N+K AK + C + ++R + K
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLAREK 285
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 109 bits (274), Expect = 1e-26
Identities = 51/294 (17%), Positives = 94/294 (31%), Gaps = 27/294 (9%)
Query: 132 RPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKF 191
P + A + N++ K +++R L L ++ T K
Sbjct: 15 TPISGQSTAYWICDNRLKTTSIEKLQVNRPEHCGDL-PETKLSSEIKQIMPDTYLGIKKV 73
Query: 192 TVCGDIHGQFYDLMNIFELNGLPSPDNPYLFN-------GDFVDRGSFSVECIFTLFGFK 244
D+HGQ+ L+ + + + D + F GD DRG E ++ ++
Sbjct: 74 VALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLD 133
Query: 245 LLYP---NHFFMARGNHESA-------YMNQIYGFEGEVKSKYTDLMAQFFTEVYNWL-- 292
+ GNHE Y++Q Y + ++ + + TE+ WL
Sbjct: 134 QQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRS 193
Query: 293 -PLCHCINNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAP 351
IN+ + + HGG+ S + + + + L D
Sbjct: 194 KNTIIKINDVLYM-HGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGN 252
Query: 352 SK---RGVGV-HFGPDVTKAFLERNKLEYIIRSHEVKQDGYEVAHDGRCITVFS 401
RG F L+ + +I+ H Q+ + I V S
Sbjct: 253 GPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHTS-QERVLGLFHNKVIAVDS 305
Score = 33.2 bits (75), Expect = 0.19
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 491 FNGDFVDRGSFSVECIFTLFGFKLLYPN-----HFFMARVECIFTLFGFKLLYPNHFFMA 545
GD DRG E ++ ++ + H M E + + ++ +
Sbjct: 111 MTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIAT 170
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 109 bits (274), Expect = 1e-25
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALN 89
E + A LK + N+ F+N+ Y+ AI+ Y+ A+E+ ++Y+N S Y+ + +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVE 60
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVH-KARPNDKDAKAKFTECNKI 148
++KA+EL Y+K RRA+A LGKF A+ D + ND +
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Query: 149 VKRMQIKGKL 158
++K K
Sbjct: 121 QAMSKLKEKF 130
Score = 85.2 bits (211), Expect = 1e-17
Identities = 23/114 (20%), Positives = 37/114 (32%)
Query: 25 KEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAI 84
E ++ A L+ F A E AIE+ P Y +
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDS 286
Query: 85 GYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
N KA++LD + YY R L + A +D++ + P +
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Score = 75.6 bits (186), Expect = 1e-14
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 10/126 (7%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY--- 86
E E A ++KA++ Y AIE+ Y + K +
Sbjct: 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427
Query: 87 ------ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
A N KA +LD +A A + A+ +E ++
Sbjct: 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487
Query: 141 KFTECN 146
T
Sbjct: 488 AITFAE 493
Score = 74.8 bits (184), Expect = 2e-14
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 29 VEDKERAEKLKAE--------ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYL 79
++A KL + +F Q Y++A + + A E++P Y +
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Query: 80 KTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ S+A + A F AL+ Y+ +
Sbjct: 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Score = 50.1 bits (120), Expect = 1e-06
Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 13/119 (10%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIY-----YANRSFAYLK---- 80
+DK+ F Y + E + + Y +Y K
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 81 -TEAIGY---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
T+A L+ ++ +L + + A D + + P
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 107 bits (268), Expect = 5e-25
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
EK + A+ + AA++ +P I Y R+ +L AL D +K
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148
I+L +T A +R + GK A D++ V K+ P++ + K ++ K
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
Score = 98.6 bits (246), Expect = 3e-22
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Query: 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYAL 88
+ KL A E ++ Y A Y + ++ P+ + K E A+
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315
Query: 89 NDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148
S+ ++++ A RA AY+ + A++DYE + ND+ + +
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR------EGL 369
Query: 149 VKRMQIKGKLHRKYAYRIL 167
K ++ + ++ Y+IL
Sbjct: 370 EKAQRLLKQSQKRDYYKIL 388
Score = 84.4 bits (209), Expect = 1e-17
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 10/163 (6%)
Query: 1 MARVYLSL-------EYLSMSSTTNASNPAPKEVS--VEDKERAEKLKAEANEHFKNQAY 51
+ L + +N S KE + + ++L+++A F + Y
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 52 NKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110
AI +EV A R+ ++K A++D A +L T+A+Y+ +
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219
Query: 111 AYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153
Y LG +L+L + K + K A + + K+ K ++
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262
Score = 63.2 bits (154), Expect = 8e-11
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 45 HFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
K++ +AI + S +++ P +R+ AYL E A+ D A E ++ +
Sbjct: 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364
Query: 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKF 142
A L + + K ++ +
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAY 403
Score = 61.6 bits (150), Expect = 3e-10
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 38 LKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIE 96
L+AE K KAI AA ++ + S Y + +L++ + ++
Sbjct: 182 LRAEC--FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 97 LDQTYTKAYY------------RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
LDQ + + + A + G++ A YE+V K P+ + +
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Score = 40.1 bits (94), Expect = 0.002
Identities = 4/44 (9%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTE 144
+ ++ + + ++ D E H A + +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEK-HLELGKKLLAAGQLAD 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 103 bits (259), Expect = 2e-24
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
EK + A+ + AA++ +P I Y R+ +L AL D +K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
I L +T A +R + GK A D++ V K+ P++++ K
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108
Score = 95.8 bits (239), Expect = 1e-21
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYAL 88
+ KL A E ++ Y A Y + ++ P+ + K E A+
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292
Query: 89 NDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
S+ ++++ A RA AY+ + A++DYEA + ND+ +
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343
Score = 82.3 bits (204), Expect = 3e-17
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
+ ++L+++A + F Y AI +EV A R+ ++K A++D
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVK 150
A +L T+A+Y+ + Y LG +L+L + K + K A + + K+ K
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236
Score = 61.9 bits (151), Expect = 1e-10
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 16/113 (14%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY-------------- 86
+ K ++A + + ++ NP+ S E
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Query: 87 -ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A+ K +E+ + RA ++ G+ + A+ D +A K + ++ +A
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190
Score = 61.9 bits (151), Expect = 2e-10
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 38 LKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIE 96
L+AE K KAI AA ++ + S Y + +L++ + ++
Sbjct: 159 LRAEC--FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 97 LDQTYTKAYY------------RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
LDQ + + + A + G++ A YE+V K P+ + +
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273
Score = 60.4 bits (147), Expect = 4e-10
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ K++ +AI + S +++ P +R+ AYL E A+ D A E ++
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338
Query: 101 YTKAYYRRAAAYMSLGKFK 119
+ A L + +
Sbjct: 339 DQQIREGLEKAQRLLKQSQ 357
Score = 55.4 bits (134), Expect = 2e-08
Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 16/105 (15%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY--- 106
A+ + I + R LK + A +D K ++ + + +
Sbjct: 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112
Query: 107 ------------RRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
+A + A+ + + + D + +
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 99.6 bits (249), Expect = 9e-24
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
+ E+AE+ + E E+F + A++ Y+ I+ P A Y+NR+ A K + A+
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149
D +KAIE D + +AY R+A A +++ ++ AL +A + + +
Sbjct: 195 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS-----SAREI 249
Query: 150 KRMQIK 155
++ K
Sbjct: 250 DQLYYK 255
Score = 84.1 bits (209), Expect = 2e-18
Identities = 24/104 (23%), Positives = 47/104 (45%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKA 94
A+K KAE N+ +K + +++AIE Y+ A E++ Y NR+ A + A++ + A
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+E + Y + ++ +G L D + +
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Score = 67.2 bits (165), Expect = 1e-12
Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 8/121 (6%)
Query: 26 EVSVEDKERAEKLKAEANEHFKNQA--------YNKAIELYSAAIEVNPTAIYYANRSFA 77
E ++ A + E +K + + IE ++ +
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI 114
Query: 78 YLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137
K L A ++ + Y + + A++ Y + K P D
Sbjct: 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174
Query: 138 A 138
Sbjct: 175 G 175
Score = 56.4 bits (137), Expect = 5e-09
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A K ++ +AI + AIE +P Y ++ A + + AL A D
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Query: 101 YTKAYYRRAAAYMSLGKFK 119
R + +
Sbjct: 240 VNNGSSAREIDQLYYKASQ 258
Score = 27.9 bits (63), Expect = 8.5
Identities = 3/35 (8%), Positives = 9/35 (25%)
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134
+ + +F A+ Y + +
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD 37
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 93.9 bits (233), Expect = 4e-21
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAI-----------------EVNPTAIY-Y 71
E A++ K + N FK + +A++ Y AI +
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH 233
Query: 72 ANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA 131
N + +K + A+ + + ++ KA +RR A LG+ A D+ K
Sbjct: 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293
Query: 132 RPNDKDAKAKFTECNKIVKRMQIKGK 157
P+DK + + + K + K K
Sbjct: 294 APDDKAIRRELRALAEQEKALYQKQK 319
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 95.2 bits (237), Expect = 5e-21
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYAL 88
+ + A +LK N F + +N+AI+ Y AIE++P ++Y+N S Y+ T + +
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 89 NDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKI 148
+KA+E+ ++KA RRA+A SLG F A+ D + D + E N
Sbjct: 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLN 139
Query: 149 VKRMQIKGKLHRKYAYRIL 167
+ M++ + K R
Sbjct: 140 KQAMKVLNENLSKDEGRGS 158
Score = 77.1 bits (190), Expect = 4e-15
Identities = 24/108 (22%), Positives = 36/108 (33%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALND 90
+ A L HF A L +I ++PT Y + E
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKF 298
Query: 91 ASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
KA++L+ Y YY R Y L +K A D++ P +
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346
Score = 69.8 bits (171), Expect = 7e-13
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 1/98 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A + + + + A+++NP Y +R Y + A D KA L+
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
Y + A GKF + + P +
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380
Score = 69.4 bits (170), Expect = 1e-12
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+F Q Y A E + A +NP Y + K + ++ T
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ A G F A++ Y+ + +
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Score = 64.7 bits (158), Expect = 3e-11
Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 19/140 (13%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY-------------- 86
A ++ AI+ Y A + + K +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 87 --ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK--AKF 142
A+ +KA ELD +A A + + K A+ +E + F
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Query: 143 TECNKIVKRMQIKGKLHRKY 162
E KI KR++ + K
Sbjct: 505 AEAAKIQKRLRADPIISAKM 524
Score = 62.4 bits (152), Expect = 1e-10
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 51 YNKAIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
+ + ++P+ A+ NR + + A+ AIELD Y
Sbjct: 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A Y+S G + + + +P+ A
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Score = 59.0 bits (143), Expect = 2e-09
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 17/114 (14%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A +K + ++ ++ PT + A+ A L++
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410
Query: 101 YTKAYYRRAAA----------------YMSLGKFKLALRDYEAVHKARPNDKDA 138
K + + KF A++ + P + A
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464
Score = 59.0 bits (143), Expect = 2e-09
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 3/121 (2%)
Query: 18 NASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFA 77
S P S+ E + + Y+ A L S A++ +A
Sbjct: 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
Query: 78 YLKTEAIGY---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134
L T++ L+ + L + A + A + P
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
Query: 135 D 135
Sbjct: 276 P 276
Score = 56.3 bits (136), Expect = 1e-08
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 3/107 (2%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
+ ++ + +N AI+L + A E++P + L+ E I A+
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ L +T + A + K + LR +
Sbjct: 486 EDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLAR 530
Score = 33.5 bits (77), Expect = 0.16
Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 14/136 (10%)
Query: 6 LSLEYLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQA-YNKAIELYSAAIEV 64
L+ ++ S K+ E K + ++ + ++ + +EV
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180
Query: 65 NPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYM--SLGKFKLAL 122
+ + A S A++ + T Y A + S + L
Sbjct: 181 SS-----------VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229
Query: 123 RDYEAVHKARPNDKDA 138
R N A
Sbjct: 230 SANTVDDPLRENAALA 245
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 91.3 bits (227), Expect = 4e-20
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAI-----------EVNPTAIY------YANRS 75
+E LK N FK+Q + AI+ Y+ + + + + N
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280
Query: 76 FAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
LK A++ +A+E+D + TKA YRRA + L ++ AL D + + P D
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340
Query: 136 KDAKAKFTECNKIVK 150
K +A+ + + +K
Sbjct: 341 KAIQAELLKVKQKIK 355
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 86.3 bits (213), Expect = 4e-18
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAI---------------EVNPTAIY-YAN 73
E E+A +K + +FK Y +A+ Y + + + N
Sbjct: 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322
Query: 74 RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133
+ YLK A+ KA+ LD K YRR A + + +F+ A D+E V + P
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
Query: 134 NDKDAKAKFTECNKIVKR 151
+K A+ + + C K K
Sbjct: 383 QNKAARLQISMCQKKAKE 400
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 74.4 bits (183), Expect = 4e-16
Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 1/126 (0%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
++ E+L A ++ ++ A +++ A ++ A Y+ AL
Sbjct: 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ 73
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149
S +D + + A ++ LG A + + +A ++
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
Query: 150 KRMQIK 155
+ + +
Sbjct: 134 EAVTAR 139
Score = 37.8 bits (88), Expect = 0.002
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 93 KAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
L + + Y GK+ A + ++A+ D
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 74.8 bits (184), Expect = 1e-15
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 41 EANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
E + + A++ +SA + + N Y + + A +++I D+
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKH 69
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYE-AVHKARPNDKDA 138
AY++R Y K+ LA++D + A+ + R N
Sbjct: 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108
Score = 60.5 bits (147), Expect = 1e-10
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ + +A + ++ +I + A+ Y R Y +TE A+ D +A+ +
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 101 ----------------YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
+ Y A Y ++K A + + +K
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 158
Score = 42.8 bits (101), Expect = 9e-05
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
AI N + AL+ S + +++ + Y L A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 128 VHKARPNDKDA 138
+ A
Sbjct: 63 SINRDKHLAVA 73
Score = 37.4 bits (87), Expect = 0.006
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 17/89 (19%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-----------------AIYYANRSFAYLKTEAI 84
+++ + Y+ AI+ A+ N +F Y K E
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 85 GYALNDASKAIELDQTYTKAYYRRAAAYM 113
A + A + + +A +
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDKAMECV 166
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 71.0 bits (174), Expect = 8e-15
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Query: 19 ASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFA 77
S K+++ + + + + A + + +A + + Y +
Sbjct: 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79
Query: 78 YLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137
Y E A + + A L + + + L A +E V + ++K
Sbjct: 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Query: 138 AK 139
Sbjct: 140 KI 141
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 74.4 bits (183), Expect = 3e-14
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 1/107 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
++ + + + + + + A + P + A+ E + L
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A L A +L + L H P A
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Score = 71.7 bits (176), Expect = 2e-13
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 1/107 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
E+ + + + + + + A + P + A+ E + L
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A L A +L + L H P A
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176
Score = 70.5 bits (173), Expect = 4e-13
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 1/107 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
++ + + + + + + A + P + A+ E + L
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A L A +L + L H P A
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414
Score = 70.2 bits (172), Expect = 5e-13
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Query: 50 AYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
+ + + A + P + A+ E + L +A L A
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452
Query: 109 AAAYMSLGKFKLALRDYEAVHKARPNDK 136
+L L + A ND
Sbjct: 453 GGGRPALESIVAQLSRPDPALAALTNDH 480
Score = 70.2 bits (172), Expect = 6e-13
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L +A L A
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P A
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Score = 69.4 bits (170), Expect = 9e-13
Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 1/109 (0%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
++ + + + + + + A + P + A+ E + L
Sbjct: 102 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLP 161
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A L A +L + L H P A
Sbjct: 162 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210
Score = 69.4 bits (170), Expect = 1e-12
Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 1/107 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
E+ + + + + + A + P + A+ E + L
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A L A +L + L H P A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Score = 69.0 bits (169), Expect = 1e-12
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + A + P + A+ S E + L +A L A
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P A
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Score = 68.2 bits (167), Expect = 2e-12
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 1/107 (0%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA 91
E+ + + + + + + A + P + A+ E + L
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+A L A +L + L H P A
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278
Score = 68.2 bits (167), Expect = 3e-12
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + A + P + A+ E + L +A L A +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P A
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Score = 58.2 bits (141), Expect = 3e-09
Identities = 15/108 (13%), Positives = 26/108 (24%), Gaps = 3/108 (2%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIG-YALND 90
E + A EL ++++ + A R EA+ +
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAV-EAVHAWRNAL 60
Query: 91 ASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ L A +L + L H P A
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 72.2 bits (178), Expect = 8e-14
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
++ HF+ + +++ + AI+ NP A Y+N Y + + A+ A+ L
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ Y AAA ++ G + A++ Y + + P+
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Score = 68.0 bits (167), Expect = 2e-12
Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A+ ++ + A P S + + + + + ++ AI+ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+AY Y G+ + A+ Y + +P+ D
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Score = 67.2 bits (165), Expect = 3e-12
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A + Y+ A+ + PT A N + + I A+ KA+E+ + A+ A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ GK + AL Y+ + P DA
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADA 375
Score = 64.9 bits (159), Expect = 2e-11
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ AI+ Y AIE+ P Y N + A + ++ A + + A+ L T+ + A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
G + A+R Y + P A
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Score = 64.1 bits (157), Expect = 3e-11
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+AIE Y A+ + P Y N + A + + A+ A++ +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+LG+ + A Y + +PN A
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVA 171
Score = 63.7 bits (156), Expect = 4e-11
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A Y AIE P A+ ++N + I A++ KA+ LD + AY
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
F A+ Y PN
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Score = 63.7 bits (156), Expect = 4e-11
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
A++ Y +A++ NP ++ + A KAIE + A+
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + G+ LA+ +E PN DA
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Score = 62.2 bits (152), Expect = 1e-10
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
AI + A+ ++P Y N + A+ +A+ L + + A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
Y G LA+ Y + +P+ DA
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Score = 58.3 bits (142), Expect = 2e-09
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
AY +A+ L +P A+ + N + Y + I A++ +AIEL + AY
Sbjct: 224 AAYLRALSL-------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A A G A Y + P D+
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Score = 54.1 bits (131), Expect = 6e-08
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
AN + +A+ LY A+EV P A ++N + + + AL +AI + T
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
Query: 101 YTKAYYRRAAAYMSLG 116
+ AY +
Sbjct: 372 FADAYSNMGNTLKEMQ 387
Score = 31.4 bits (72), Expect = 0.68
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A G F+ A R + + P++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 69.2 bits (170), Expect = 3e-13
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 46 FKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104
K + AI+ Y AA++ + T Y + A+ K I T K
Sbjct: 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144
Query: 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+Y AY ++ A + V + +PN
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178
Score = 66.5 bits (163), Expect = 2e-12
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKT----EAIGYALNDASKAIE 96
A+ FKN Y +AIE+++ + Y R+ Y + A + +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKD-IETYFSKVN 68
Query: 97 LDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + + M G+ LA++ Y+A D
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110
Score = 65.4 bits (160), Expect = 5e-12
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 53 KAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAA 111
K IE Y + + + + +K A+ A++ D T Y + +
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 112 YMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + G F LA++ E + D
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKV 144
Score = 62.3 bits (152), Expect = 6e-11
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLK---TEAIGYALNDASKAIEL 97
++ N+ Y KA + +E+ P I Y R+ A G A K IE+
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 98 DQT--------YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
+A A Y A ++ + P +K A
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258
Score = 61.9 bits (151), Expect = 7e-11
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 5/109 (4%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ + + AI+ I + AY + A + K +EL
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 101 YTKAYYRRAAAYMSLG---KFKLALRDYE-AVHKARPNDKDAKAKFTEC 145
Y RA A + K LA YE + P K + E
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA 223
Score = 50.3 bits (121), Expect = 5e-07
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 64 VNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALR 123
+N + + K A+ +K Y RRA Y L K+ LA +
Sbjct: 1 MNDDVEF--RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQK 58
Query: 124 DYEAVHKA-RPNDKDAKA 140
D E +
Sbjct: 59 DIETYFSKVNATKAKSAD 76
Score = 45.7 bits (109), Expect = 1e-05
Identities = 12/80 (15%), Positives = 16/80 (20%), Gaps = 9/80 (11%)
Query: 47 KNQAYNKAIELYSAAIEVNPT---------AIYYANRSFAYLKTEAIGYALNDASKAIEL 97
+ A Y IEV ++ Y A + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 98 DQTYTKAYYRRAAAYMSLGK 117
D T KA
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 64.9 bits (158), Expect = 1e-12
Identities = 13/111 (11%), Positives = 35/111 (31%), Gaps = 1/111 (0%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
+ E+L + A +++ Y A ++ A ++ + ++ A++
Sbjct: 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
S +D + + A + G+ A + N +
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127
Score = 48.8 bits (116), Expect = 4e-07
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 51 YNKAIELYSAAIEVNP---TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ E++ +Y + +F ++ A LD ++ +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLY--SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145
A ++G++ LA+ Y + EC
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98
Score = 39.9 bits (93), Expect = 4e-04
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
Y+ AI YS ++ + + + L+ + A + A EL
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 101 YTKAYYRRAAAYMSLGKFKLA 121
+ L KL
Sbjct: 122 XPEFXELSTRVSSMLEAIKLK 142
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 66.4 bits (163), Expect = 2e-12
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 40 AEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELD 98
+ + Y KA E ++ AIE N AI Y N + + AL KA+ELD
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87
Query: 99 QTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ AYY Y+ +K A +E +A + D
Sbjct: 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Score = 63.7 bits (156), Expect = 2e-11
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y +A +++ A+ + +K E AL +A+EL++ T+A ++
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ G AL + AV + P DA
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 62.1 bits (152), Expect = 4e-11
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
A+ A+E+N + AL+ + E D + A+Y
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
Y + AL + +P+ A
Sbjct: 201 VTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 61.4 bits (150), Expect = 9e-11
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 49 QAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
++ + L + + + + A +KAIE ++ Y
Sbjct: 6 HHHHHSSGLVPRGSHMAS--MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A S+ + + AL Y+ + + A
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATA 93
Score = 50.6 bits (122), Expect = 3e-07
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
++A+ ++A E +P A + N Y E AL KAI++ + A + +
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Query: 110 AAYMSLGK 117
Sbjct: 235 LLGHHHHH 242
Score = 30.6 bits (70), Expect = 1.1
Identities = 5/59 (8%), Positives = 14/59 (23%), Gaps = 4/59 (6%)
Query: 84 IGYALNDASKAIELDQTYTKAYYRRAAAY----MSLGKFKLALRDYEAVHKARPNDKDA 138
+G + + + L + G ++ A + + D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 65.5 bits (160), Expect = 2e-12
Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 17/123 (13%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-----------------TAIYYANRS 75
+ +++ + + + +A+ + I +N ++ +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 76 FAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
AY K A + ++ A + G+ K ALR YE + + ++
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121
Query: 136 KDA 138
A
Sbjct: 122 LAA 124
Score = 63.2 bits (154), Expect = 1e-11
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP--TAIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99
A A+ +Y +++ A ++ YL E L K +
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
A YR + + +++ A + V P+ + K
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
Score = 59.0 bits (143), Expect = 3e-10
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A + KN+ Y+KA Y ++ P + + AL K ++L+
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 101 YTKAYYRRAAAYMSLG-KFKLALRDYEAVHKARPNDKDA 138
A Y + K L + + A
Sbjct: 121 NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 68.9 bits (168), Expect = 2e-12
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L +A L A
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364
Score = 67.4 bits (164), Expect = 7e-12
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + A + P + A+ E + L +A L A
Sbjct: 208 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTPDQVVA 296
Score = 66.6 bits (162), Expect = 1e-11
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L +A L A
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
Score = 66.2 bits (161), Expect = 1e-11
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L +A L A
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H A
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703
Score = 65.8 bits (160), Expect = 2e-11
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 16/125 (12%)
Query: 30 EDKERAEKLKAEANEHFKNQA---------------YNKAIELYSAAIEVNPT-AIYYAN 73
E +R + +A+ Q + + + A + P + A+
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 74 RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133
E + L +A L Q A +L + L H P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 134 NDKDA 138
+ A
Sbjct: 733 DQVVA 737
Score = 64.7 bits (157), Expect = 4e-11
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L +A L A
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Score = 64.3 bits (156), Expect = 7e-11
Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + + P + A+ E + L +A L A
Sbjct: 445 VQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNI 504
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQVVA 533
Score = 63.5 bits (154), Expect = 1e-10
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 1/98 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ + + + A + + A+ E + L +A L
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A +L + L H P+ A
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669
Score = 62.4 bits (151), Expect = 2e-10
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + A + P + A+ E + L +A L Q A
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P A
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVA 635
Score = 61.2 bits (148), Expect = 5e-10
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + A + P + A+ E + L +A L A
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H A
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQVQVVA 601
Score = 60.4 bits (146), Expect = 1e-09
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 9/125 (7%)
Query: 23 APKEVSVEDKERAEKLKAEANEHFKNQAYNKAIE--------LYSAAIEVNPT-AIYYAN 73
A + E + +L + A+E L A + + P + A+
Sbjct: 138 ALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIAS 197
Query: 74 RSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133
+ E + L +A L A +L + L H P
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 134 NDKDA 138
+ A
Sbjct: 258 DQVVA 262
Score = 60.0 bits (145), Expect = 1e-09
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + + A+ + E + L +A L A
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P A
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Score = 56.6 bits (136), Expect = 2e-08
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ + L +A L A
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Score = 56.2 bits (135), Expect = 2e-08
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L + L A
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H P+ A
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVA 499
Score = 56.2 bits (135), Expect = 2e-08
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 2/105 (1%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
+ + + + + + A + P + A+ E + L +
Sbjct: 328 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 387
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A L A +L + L H P+ A
Sbjct: 388 AHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVA 431
Score = 56.2 bits (135), Expect = 2e-08
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 10/122 (8%)
Query: 26 EVSVEDKERAEKLK---AEA-----NEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSF 76
+ + +A L A + + + + A + P + A+
Sbjct: 345 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 404
Query: 77 AYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136
E + L +A L A +L + L H P
Sbjct: 405 KQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV 463
Query: 137 DA 138
A
Sbjct: 464 VA 465
Score = 55.0 bits (132), Expect = 5e-08
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + + A + P + A+ E + L +A L A
Sbjct: 717 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNI 776
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+L + L H A
Sbjct: 777 GGKQALETVQRLLPVLCQDHGLTLAQVVA 805
Score = 46.6 bits (110), Expect = 2e-05
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 9/109 (8%)
Query: 36 EKLKAEANEHFKNQA---YNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALN 89
+++ A A+ QA + + + + AI A E + L
Sbjct: 869 DQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL---ETVQRLLP 925
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ L A + +L + L H PN A
Sbjct: 926 VLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVA 974
Score = 45.8 bits (108), Expect = 3e-05
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 1/93 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + A + P + A+ E + L + L A
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
+L + L H + A A
Sbjct: 809 NIGGKQALETVQRLLPVLCQAHGLTQDQVVAIA 841
Score = 44.6 bits (105), Expect = 8e-05
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 5/95 (5%)
Query: 49 QAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
+ + + + + AI L E + L +A L Q A
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQAL--ETVQRLLPVLCQAHGLTQDQVVAI 840
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
+L + L H P+ A A
Sbjct: 841 ASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIA 875
Score = 39.2 bits (91), Expect = 0.004
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 8/124 (6%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ + + + + P + A+ S E + L + L A
Sbjct: 918 ETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIAS 977
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKF-----TECNKIVKRMQIKGKLHRKY 162
R A+ + A A + K K + +L R+
Sbjct: 978 NGGKQALESIVAQLSRPDPALAALTNDHLVALACLGGRPAMDAVK--KGLPHAPELIRRV 1035
Query: 163 AYRI 166
RI
Sbjct: 1036 NRRI 1039
Score = 31.2 bits (70), Expect = 1.2
Identities = 12/90 (13%), Positives = 18/90 (20%), Gaps = 1/90 (1%)
Query: 49 QAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
Y I A + + S A + A ++LD +R
Sbjct: 106 VTYQHIITALPEATHEDIVGVG-KQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKR 164
Query: 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A P A
Sbjct: 165 GGVTAMEAVHASRNALTGAPLNLTPAQVVA 194
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 65.2 bits (159), Expect = 3e-12
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 193 VCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFF 252
V GD+HG + +LMN + G + + + GD VDRG+ +VEC+ +L+ F
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECL------ELITFPWFR 70
Query: 253 MARGNHESAYMNQIYGFE---------GEVKSKYTDLMAQFFTEVYNW---LPLCHCI-- 298
RGNHE ++ + G + + LPL +
Sbjct: 71 AVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVS 130
Query: 299 -NNKVLVMHGGLF 310
+ K ++ H
Sbjct: 131 KDKKYVICHADYP 143
Score = 27.5 bits (61), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 491 FNGDFVDRGSFSVECI 506
GD VDRG+ +VEC+
Sbjct: 46 SVGDLVDRGAENVECL 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 65.8 bits (161), Expect = 4e-12
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
A +S A+ + P + + A +ELD TY A+ R
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A G+ KLA D A ++ PND
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFR 147
Score = 53.9 bits (130), Expect = 4e-08
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 50 AYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
+ ++ ++ + A R Y A ND S+A+ + + +
Sbjct: 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 83
Query: 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
G F A +++V + P A
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113
Score = 53.5 bits (129), Expect = 5e-08
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 47 KNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY---ALNDASKAIELDQTYT 102
+ +A E+ E + + F DA+ L + +
Sbjct: 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215
Query: 103 KAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + Y+SLG A ++ ++
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Score = 53.1 bits (128), Expect = 6e-08
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
++ A E + + +E++PT + NR A A +D + D
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A L + + A + + ++
Sbjct: 153 LAEQKLDEKQ-AKEVLKQHFEKSDKEQWG 180
Score = 52.3 bits (126), Expect = 1e-07
Identities = 7/82 (8%), Positives = 20/82 (24%), Gaps = 1/82 (1%)
Query: 46 FKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104
+ + + + + YL + A A+ +
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Query: 105 YYRRAAAYMSLGKFKLALRDYE 126
+ LG+ + L + +
Sbjct: 252 HRYALLELSLLGQDQDDLAESD 273
Score = 31.1 bits (71), Expect = 0.78
Identities = 8/77 (10%), Positives = 16/77 (20%), Gaps = 16/77 (20%)
Query: 29 VEDKERAEKLK---AEA-----NEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYL 79
D L +E + + A L+ A+ N + +
Sbjct: 201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELS 260
Query: 80 KTEAIGYALNDASKAIE 96
L +
Sbjct: 261 L-------LGQDQDDLA 270
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 62.6 bits (153), Expect = 2e-11
Identities = 19/84 (22%), Positives = 31/84 (36%)
Query: 51 YNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110
+KA A+ + T + + YL + AL +KA+E R A+
Sbjct: 134 RDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193
Query: 111 AYMSLGKFKLALRDYEAVHKARPN 134
A + GK + A R H +
Sbjct: 194 ALLLKGKAEEAARAAALEHHHHHH 217
Score = 53.3 bits (129), Expect = 3e-08
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A+ + A VNP A + R Y A +A+ L+ + A
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALA 158
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
Y+S+G+ AL Y + P D D
Sbjct: 159 ELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Score = 50.2 bits (121), Expect = 4e-07
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYA-------LNDA----SKAIELD 98
N A+E + P Y S AY+ L A A ++
Sbjct: 55 VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114
Query: 99 QTYTKAYYRRAAAYMSLGKFKLALRDYE 126
Y + +R Y LG+ A +
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASLK 142
Score = 48.7 bits (117), Expect = 1e-06
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y+ A+ L+ A++ NP + LK + AL + + Y Y +
Sbjct: 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80
Query: 110 AAYMSL-----------GKFKLALRDYEAVHKARPNDKDA 138
AY++L G + AL + + P
Sbjct: 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120
Score = 41.4 bits (98), Expect = 3e-04
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 62 IEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLA 121
++ AL +A++ + +A Y A + LG A
Sbjct: 1 MQTAEQN--PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA 58
Query: 122 LRDYEAVHKARPNDKDA 138
L + + + P
Sbjct: 59 LENGKTLVARTPRYLGG 75
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 65.6 bits (159), Expect = 2e-11
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A+ + +A+ Y AI ++PT A Y+N + + + AL ++AI+++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHR 160
+ A+ A+ + G A+ Y K +P+ DA CN +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY-----CNLAHCLQIVCDWTDY 164
Query: 161 KYAYRILMDIKA 172
+ L+ I A
Sbjct: 165 DERMKKLVSIVA 176
Score = 51.3 bits (122), Expect = 7e-07
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A+ LY A+EV P A ++N + + + AL +AI + T+ AY
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + AL+ Y + P DA
Sbjct: 85 NTLKEMQDVQGALQCYTRAIQINPAFADA 113
Score = 44.8 bits (105), Expect = 6e-05
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
A++ Y+ AI++NP A ++N + + + I A+ A++L + AY A
Sbjct: 93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + + + + +
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Score = 35.9 bits (82), Expect = 0.039
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
A N + + I A+ KA+E+ + A+ A+ GK + AL Y+
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 128 VHKARPNDKDA 138
+ P DA
Sbjct: 69 AIRISPTFADA 79
Score = 29.8 bits (66), Expect = 2.5
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 13/116 (11%)
Query: 26 EVSVEDKERAEKLKAEANEHFKNQA--------YNKAIELYSAAIEVNPTAIY-YANRSF 76
+ +++ RA ++ + N A +AI Y A+++ P Y N +
Sbjct: 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153
Query: 77 AYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132
K + + + + + KA
Sbjct: 154 CLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHS----MLYPLSHGFRKAI 205
Score = 28.2 bits (62), Expect = 8.5
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + A G + A+R Y + P A
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 59.7 bits (145), Expect = 3e-11
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 52 NKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAA 110
E A + + Y + E AL A++ D TY+ A+
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 111 AYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
G A + +E+ A + D +
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVV 92
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 58.2 bits (142), Expect = 8e-11
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIEL--DQTYTKAYYR 107
Y ++I+L+ AI+++P + Y+ + A E A++ + I + D+ +
Sbjct: 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPND 135
+A A + ++ EA K +
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 49.8 bits (120), Expect = 8e-08
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 62 IEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLA 121
++ NP Y +++ KAI+LD +K + + A +L +++ A
Sbjct: 2 VDQNPEE--YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
Query: 122 LRDYEAVHKARPNDKDAKA 140
+ Y V ++ +
Sbjct: 60 VDCYNYVINVIEDEYNKDV 78
Score = 34.4 bits (80), Expect = 0.021
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106
YN I + + +A ++ A E A +L+ + ++
Sbjct: 61 DCYNYVIN-----VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH--HHH 112
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 62.3 bits (152), Expect = 9e-11
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
E E K +A + A + P + + + E G A+ +
Sbjct: 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A LD + A ++ + AL A ++P +
Sbjct: 81 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 59.6 bits (145), Expect = 6e-10
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y+ A A+E+ P A + AL+ ++A++++ Y + Y A
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
+Y ++ ++ LA + +
Sbjct: 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278
Score = 50.8 bits (122), Expect = 5e-07
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 16/104 (15%)
Query: 51 YNKAIELYSAAIEVNP----------------TAIYYANRSFAYLKTEAIGYALNDASKA 94
N A+ A + P + + F + A
Sbjct: 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+E++ + + Y + A + + RP+D
Sbjct: 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Score = 47.3 bits (113), Expect = 6e-06
Identities = 13/93 (13%), Positives = 19/93 (20%), Gaps = 10/93 (10%)
Query: 48 NQAYNKAIELYSAAIEVNP--TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
N Y NP + LK + A + +A+
Sbjct: 7 NTDYPFEAN--------NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAW 58
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
K LA+ P D
Sbjct: 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 91
Score = 46.1 bits (110), Expect = 1e-05
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ A+E+ NP A +A+ Y + A + +A+EL + + +
Sbjct: 159 TLLHAALEM-------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 108 RAAAYMSLGKFKLALRDYEAVHKA---RPNDKDA 138
A + + + AL Y ++A P
Sbjct: 212 LGATLANGNRPQEALDAY---NRALDINPGYVRV 242
Score = 40.4 bits (95), Expect = 0.001
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A++ Y+ A+++NP N + +Y A +AI + T +
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281
Query: 110 ------------AAYMSLGKFKLALRDYE 126
+ + L Y
Sbjct: 282 REATRSMWDFFRMLLNVMNRPDLVELTYA 310
Score = 39.6 bits (93), Expect = 0.002
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 87 ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
D Y + + + L A +EAV +A P ++A
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 60.5 bits (147), Expect = 2e-10
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 32/177 (18%)
Query: 195 GDIHGQFYDLMNIFELNGLPSPDNPYL-FNGDFVDRGSFSVECIFTLFGFKLLYPNHFFM 253
GDIHG L ++ + L GD V++G S + +LL +
Sbjct: 25 GDIHGCRAQLEDLLRAVSF-KQGSDTLVAVGDLVNKGPDSFGVV------RLLKRLGAYS 77
Query: 254 ARGNHESAYMNQIYGFE-------GEVKSKYTDLMAQFFTEVYNWL---PLCHCINNKVL 303
GNH++ + + + KS L T+V +L P I +
Sbjct: 78 VLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNV 137
Query: 304 VM-HGGLFSSDNVTLED--------IRTIDRNRQPPDEGLMCELLWSDPQIPNGRAP 351
++ H GL ++ +R + Q G+ L + + +G P
Sbjct: 138 MVAHAGL--HPQRPVDRQYEDEVTTMRNLIEKEQEATGGVT---LTATEETNDGGKP 189
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 61.2 bits (149), Expect = 3e-10
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 41 EANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99
E + K I AAI +P A + + E A+ + +EL
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
KA A +Y + + A + K P K
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169
Score = 58.9 bits (143), Expect = 2e-09
Identities = 14/89 (15%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+N+AI+ ++AA+ V P + + A+ ++A+E+ + ++ Y
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ ++LG ++ A+ ++ + ++
Sbjct: 289 ISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Score = 54.3 bits (131), Expect = 4e-08
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 13/101 (12%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA----- 104
A E I+ NP N+ + T + + D+S + + Y +A
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208
Query: 105 -------YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ G+F A+ + A RP D
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
Score = 53.9 bits (130), Expect = 6e-08
Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
+E E + + + Y E LK + +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEA 90
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
AI D +A+ + A+ + + +PN+ A
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Score = 52.8 bits (127), Expect = 1e-07
Identities = 9/97 (9%), Positives = 22/97 (22%), Gaps = 9/97 (9%)
Query: 51 YNKAIELYSAAIEVNP---------TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTY 101
+ +A + E + + + + + E
Sbjct: 5 FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64
Query: 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + G + + EA P D +A
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101
Score = 50.8 bits (122), Expect = 6e-07
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 1/95 (1%)
Query: 45 HFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
+N+ AI +E+ P + +Y T A I+ + Y
Sbjct: 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168
Query: 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + + + D + + +A
Sbjct: 169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203
Score = 40.0 bits (94), Expect = 0.002
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A+E Y+ A+E+ P N + + A A+++ A+ L +
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 110 AA-----YMSLGKFKLALRDYEAVHKARPNDKDA 138
A + +L + E A D D
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 61.8 bits (150), Expect = 3e-10
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A+ +++AI Y+ A + T + Y +++ I A + L Q
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTEC 145
+ + A+ ++ + + +
Sbjct: 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Score = 60.6 bits (147), Expect = 7e-10
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
++A +S + ++P + + ++ A++ + A L Q Y
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+M LG LA ++ + D
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPLL 477
Score = 60.2 bits (146), Expect = 1e-09
Identities = 10/97 (10%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALN 89
++ ++ L +A+ F + + + + +E++P Y + ++
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
++ ++ + Y+ + K A R +
Sbjct: 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397
Score = 59.5 bits (144), Expect = 1e-09
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ A+ L A +AN AY K + A++ ++ + L +
Sbjct: 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A Y+ LA+ PN+ A
Sbjct: 556 IALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Score = 59.5 bits (144), Expect = 2e-09
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIEL--- 97
+H + A E ++ + + + A+N A+ L
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 98 ----DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
++ + + AY L + A+ ND +
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
Score = 58.3 bits (141), Expect = 3e-09
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 46 FKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104
++ NK + + ++ +P A+ + YL I A SK+ +D + A
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Query: 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ A ++ G+ A+ Y +
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
Score = 47.1 bits (112), Expect = 1e-05
Identities = 20/175 (11%), Positives = 43/175 (24%), Gaps = 46/175 (26%)
Query: 9 EYLSMSSTTNASNPAPKEV-SVEDKERAEKLKAEA-----NEHFKNQAYNKAIELYSAAI 62
L++ TN K + ++ KL+A + +++A E Y A+
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227
Query: 63 EVNPT---------------------------------------AIYYANRSFAYLKTEA 83
V+ Y + +
Sbjct: 228 MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287
Query: 84 IGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ D +I + + +A +F L + + P + D
Sbjct: 288 L-RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341
Score = 45.2 bits (107), Expect = 5e-05
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ + K + Y+ AI+ + + ++ A + + YL + G A+ +++ +
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
Query: 101 YTKAYYRRAAAY 112
A A
Sbjct: 583 EIMASDLLKRAL 594
Score = 41.7 bits (98), Expect = 5e-04
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYAL------NDASKAI 95
A + Y +A L + N ++ +F +K AL N K
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE 183
Query: 96 ELDQTYTK----------AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ Y R Y +L F A Y+ +A
Sbjct: 184 KNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236
Score = 39.4 bits (92), Expect = 0.003
Identities = 12/106 (11%), Positives = 27/106 (25%)
Query: 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDA 91
+ L + + A +L + A R Y A
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223
Query: 92 SKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137
+A+ +D +A+ + + ++ + L D
Sbjct: 224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 57.4 bits (140), Expect = 3e-10
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y++AIE Y A+E++P A + N AY K A+ KA+ELD +A+Y
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
AY G + A+ Y+ + P +A
Sbjct: 77 NAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 53.9 bits (131), Expect = 4e-09
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 51 YNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y++AIE Y A+E++P +A + N AY K A+ KA+ELD +A+Y
Sbjct: 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110
Query: 110 AAYMSLGKFKLALRDYE 126
AY G + A+ Y+
Sbjct: 111 NAYYKQGDYDEAIEYYQ 127
Score = 28.9 bits (66), Expect = 1.8
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 104 AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A+Y AY G + A+ Y+ + P +A
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 61.2 bits (149), Expect = 3e-10
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 41 EANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99
E + A+ L+ AA++ +P + + E A++ + +EL
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A A ++ + + A + P
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168
Score = 55.4 bits (134), Expect = 2e-08
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y+KA++ ++AA+ V P + + A+ +A+EL Y ++ Y
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ ++LG + A+ + + +
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQRKSRGP 321
Score = 54.7 bits (132), Expect = 4e-08
Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 41 EANEHFKNQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKTEAIGYALNDASKAIEL 97
+ + + EL+ AA+ ++PT + + A++ + A+ +
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 98 DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA---RPNDKDA 138
+ + A + + + A+ Y +A +P +
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAY---RRALELQPGYIRS 287
Score = 50.0 bits (120), Expect = 1e-06
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 35 AEKLKAEANEHFKNQAYNK-AIELYSAAIEVNPT-----AIYYANRSFAYLKTEAIGYAL 88
E K +A H Y+ Y + L+ + A+
Sbjct: 25 EEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84
Query: 89 NDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A++ D + +A+ + LA+ + +P+++ A
Sbjct: 85 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134
Score = 43.5 bits (103), Expect = 1e-04
Identities = 13/112 (11%), Positives = 25/112 (22%), Gaps = 16/112 (14%)
Query: 45 HFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
+N+ AI +E+ P + ++ A + Y
Sbjct: 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167
Query: 104 AY---------------YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
R + +S F + A + P D
Sbjct: 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219
Score = 42.7 bits (101), Expect = 2e-04
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 11/101 (10%)
Query: 49 QAYNKAIEL---YSAAIEVNPTAIYYANRSFAYLKTEAIGY------ALNDASKAIELDQ 99
+ + Y+ + A + ++ A+ LD
Sbjct: 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212
Query: 100 TYTKA--YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
T + G++ A+ + A RPND
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Score = 41.9 bits (99), Expect = 4e-04
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 12/88 (13%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A+ Y A+E+ P N + + A A+ +A+ + +
Sbjct: 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326
Query: 110 AAYMS-----------LGKFKLALRDYE 126
A + LG+
Sbjct: 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 60.6 bits (147), Expect = 6e-10
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 1/133 (0%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A+ + ++P A + A +A +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHR 160
+ A G+ + A Y H+ P + A+ + + + L
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149
Query: 161 KYAYRILMDIKAL 173
+ + + A+
Sbjct: 150 QVRAAVAQGVGAV 162
Score = 52.2 bits (125), Expect = 3e-07
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+ + AA+ P + + + A L + + L + +A R
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + A + A P
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
Score = 44.5 bits (105), Expect = 8e-05
Identities = 11/75 (14%), Positives = 21/75 (28%)
Query: 87 ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECN 146
L A+ A+ A A + +G + P +A A+
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 147 KIVKRMQIKGKLHRK 161
+R L ++
Sbjct: 68 WTQQRHAEAAVLLQQ 82
Score = 39.1 bits (91), Expect = 0.004
Identities = 19/141 (13%), Positives = 35/141 (24%), Gaps = 2/141 (1%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASK 93
E + + Q + +A L A + P A A ++
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQ 153
A +L + L ++ V A A F ++ +
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAE 176
Query: 154 IKGKLHRKYAYRILMDIKALF 174
R A I ++ L
Sbjct: 177 QL-ACARTRAQAIAASVRPLA 196
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 57.5 bits (140), Expect = 7e-10
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y++A+ L + + + AY+KT A+ +++ K
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
Y+ + K+ LA+ V +A P + +
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNV 112
Score = 55.2 bits (134), Expect = 5e-09
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y+ A+ L E NP A A++ A+ L K + A
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+Y +G+ + AL ++ ++
Sbjct: 152 FSYEQMGRHEEALPHFKKANELDEGASVE 180
Score = 49.8 bits (120), Expect = 3e-07
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+ +++ P Y++ + A+ K E + +R
Sbjct: 63 ELLERSLAD-------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A +LG+F A+ ++ RPN+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
Score = 45.5 bits (109), Expect = 1e-05
Identities = 10/71 (14%), Positives = 21/71 (29%)
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
+YY ++ ++ K A+ + + D AY+ G E
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 128 VHKARPNDKDA 138
P++
Sbjct: 68 SLADAPDNVKV 78
Score = 30.9 bits (71), Expect = 0.75
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ D Y + ++ G++ A+ E V+ A D D
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44
Score = 30.5 bits (70), Expect = 0.80
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 49 QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
++ A+ L P + +F+Y + AL KA ELD+ +
Sbjct: 131 DSFKIALGL-------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 55.1 bits (134), Expect = 1e-09
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y++AIE Y A+E++P A + N AY K A+ KA+ELD +A+Y
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 110 AAYMSLGKFKLALRDYEAVHKA---RPNDKDA 138
AY G + A+ Y+ KA PN+ +A
Sbjct: 85 NAYYKQGDYDEAIEYYQ---KALELDPNNAEA 113
Score = 43.9 bits (105), Expect = 1e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 51 YNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y++AIE Y A+E++P A + N AY K A+ KA+ELD +A
Sbjct: 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Query: 110 AAYMSLG 116
A G
Sbjct: 119 NAKQKQG 125
Score = 40.1 bits (95), Expect = 2e-04
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 60 AAIEVNPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK 117
A+ +P A + N AY K A+ KA+ELD +A+Y AY G
Sbjct: 1 GAM--DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 58
Query: 118 FKLALRDYEAVHKARPNDKDA 138
+ A+ Y+ + PN+ +A
Sbjct: 59 YDEAIEYYQKALELDPNNAEA 79
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 55.3 bits (132), Expect = 3e-09
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 24/142 (16%)
Query: 34 RAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-------------AIYYANRSFAYLK 80
A ++A Y++A A+E++ T A +A + A
Sbjct: 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69
Query: 81 TEAIGYALNDASKAIEL-----------DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVH 129
+ AL+ A KA+ + + A Y RA A LG+ A+ +++ V
Sbjct: 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129
Query: 130 KARPNDKDAKAKFTECNKIVKR 151
+ K ++
Sbjct: 130 EMIEERKGETPGKERMMEVAID 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 53.2 bits (128), Expect = 7e-09
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 1/98 (1%)
Query: 41 EANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99
E K +A + A + P + + + E G A+ + A LD
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137
+ A ++ + AL A ++P +
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
Score = 38.6 bits (90), Expect = 8e-04
Identities = 9/66 (13%), Positives = 16/66 (24%)
Query: 73 NRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132
+ LK + A + + +A+ K LA+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 133 PNDKDA 138
P D
Sbjct: 82 PKDIAV 87
Score = 29.3 bits (66), Expect = 1.1
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + + L A +EAV + P ++A
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA 53
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 56.5 bits (137), Expect = 7e-09
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ +++A+ Y A ++ + Y T A S+A+ +
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
+ G++K A + + + +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Score = 55.4 bits (134), Expect = 1e-08
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 1/93 (1%)
Query: 47 KNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
A S A + T + ++ A+ A +L +
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
Y KLA R + P D
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195
Score = 53.5 bits (129), Expect = 6e-08
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ K + Y +A++ + A+ + P A Y+ + + A++ A+ L +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYE 126
T + A +
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAYIGAD 328
Score = 53.1 bits (128), Expect = 9e-08
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 46 FKNQAYNKAIELYSAAIEVNPT----------AIYYANRSFAYLKTEAIGYALNDASKAI 95
F+N + A + + A+E N K + AL+ +A+
Sbjct: 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263
Query: 96 ELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA---RPNDKDA 138
L Y + +G F+ A+ + H A R +D +
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYF---HTALGLRRDDTFS 306
Score = 53.1 bits (128), Expect = 1e-07
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALND 90
+E + + + A H+ N + +L S +E +P A ++
Sbjct: 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYL 78
Query: 91 ASKAIELDQTYTKAYYRRAAAYMSLGK-FKLALRDYEAVHKARPNDKDA 138
+ K ++L + +++ Y+ +G + A R A
Sbjct: 79 SHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Score = 40.4 bits (95), Expect = 0.001
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 2/90 (2%)
Query: 51 YNKAIE-LYSAAIEVNPTAIY-YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
YNK E + +++ + + + + S +E D +
Sbjct: 3 YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 109 AAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ L K + P++ +
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLYPSNPVS 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 56.6 bits (136), Expect = 1e-08
Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 18/147 (12%)
Query: 43 NEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKT------------EAIGYALN 89
+ ++ ++ A++++ + AYL +A+ A
Sbjct: 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AYA 245
Query: 90 DASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIV 149
A K + + RA + + AL + P + + + + + +
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305
Query: 150 KR----MQIKGKLHRKYAYRILMDIKA 172
R ++ KGK K +L ++
Sbjct: 306 SRLTSLLESKGKTKPKKLQSMLGSLRP 332
Score = 55.4 bits (133), Expect = 2e-08
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY-A 87
E A + + + E K ++ + A + A T A
Sbjct: 68 HSVEDAGRKQQDVQEE-----MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 88 LNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDK 136
SKA++L+ +A+ + Y G A + N
Sbjct: 123 EVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Score = 53.9 bits (129), Expect = 8e-08
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 17/113 (15%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGY---------ALNDAS 92
++K A +S A+ + N S + + ++ A
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 93 KAIELDQTYTKAYYRRAAAYMS--------LGKFKLALRDYEAVHKARPNDKD 137
A+++D +++Y AY+S + AL Y K
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256
Score = 28.8 bits (64), Expect = 5.0
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIE-LDQT 100
A H ++Y +A+E +S A ++P + + + + L+ + +E +T
Sbjct: 265 ATLHKYEESYGEALEGFSQAAALDP---AWPE---PQQREQQLLEFLSRLTSLLESKGKT 318
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
K + Y++ + +
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLS 359
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 55.6 bits (133), Expect = 1e-08
Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 16/182 (8%)
Query: 195 GDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLY--PNHFF 252
GD+HG + +L+ + + GD V RG S++ + + +
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDV------LRYVKSLGDSVR 60
Query: 253 MARGNHESAYMNQIYGFEGEVKSKYTD--LMAQFFTEVYNWL---PLCH-CINNKVLVMH 306
+ GNH+ + G L A E+ NWL PL K+++ H
Sbjct: 61 LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAH 120
Query: 307 GGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGRAPSKRGVGVHFGPDVTK 366
G+ + L+ + R+ + S G+ +T
Sbjct: 121 AGI--TPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITN 178
Query: 367 AF 368
AF
Sbjct: 179 AF 180
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 4e-08
Identities = 46/365 (12%), Positives = 102/365 (27%), Gaps = 104/365 (28%)
Query: 14 SSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIY--- 70
T S +S++ E + +L + NP +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 71 -----YANRSFAYLKTEAIGYALNDASKAIE-----LDQTYTKAYYRRAAAYMSLGKFKL 120
+ K + + IE L+ + + L F
Sbjct: 335 ESIRDGLAT-WDNWKH----VNCDKLTTIIESSLNVLEPAEYRKMFD------RLSVF-- 381
Query: 121 ALRDYEAVHKARPNDKD----------AKAKFTECNKIVKRMQIKGKLHR---KYAYRIL 167
P ++ +V ++ + + + I
Sbjct: 382 ------------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 168 MDIKALFMTQDSLVHITVEDEAKFTVCGDIHGQF---YDLMNIFELNGLPSP--DNPYLF 222
I L + +E+E +H Y++ F+ + L P D Y +
Sbjct: 429 PSI------YLEL-KVKLENEY------ALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFY 474
Query: 223 --------NGDFVDRGS-FSVECIFTLFGF---KLLYPNHFFMARGNHESA------YMN 264
N + +R + F + +F F F K+ + + + A G+ + Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRM--VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 265 QIYGFEGEVKSKYTDLMAQFFTEVYNWLPLC--HCINNKVL-VMHGGLFSSDNVTLED-I 320
I + + + ++ ++LP + I +K ++ L + D E+
Sbjct: 533 YICDNDPKYERLVNAIL--------DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 321 RTIDR 325
+ + R
Sbjct: 585 KQVQR 589
Score = 46.0 bits (108), Expect = 3e-05
Identities = 83/609 (13%), Positives = 163/609 (26%), Gaps = 189/609 (31%)
Query: 29 VEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYA--------NRSFAY-- 78
V+D ++ K E + ++ + + N F
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 79 LKTEAIGYALNDASKAIELD------QTYTKAYYRRAAAYMSL----------------- 115
+KTE ++ + D Q + K R Y+ L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 116 ----GKFKLA---LRDYEAVHKARPNDKDAKA---KFTECNKIVKRMQIKGKLHRKYAYR 165
GK +A Y+ V K CN +++ KL Y+
Sbjct: 158 VLGSGKTWVALDVCLSYK-VQCKMDF----KIFWLNLKNCNSPETVLEMLQKLL----YQ 208
Query: 166 ILMDIKALFMTQDSLVHITVE-DEAKFTVCGDIHGQFYDLMNIFELNGLPSP----DNPY 220
I + + D +I + + +L + + + N
Sbjct: 209 IDPNWTSR---SDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCLLVLLN-- 252
Query: 221 LFNGDFVDRGSFSVECIFTLFGFKLL----YPNHFFMARGNHESAY--MNQIYGF-EGEV 273
+ N + +F++ C K+L + + + EV
Sbjct: 253 VQNAKAWN--AFNLSC-------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 274 KSKYTDLMAQFFTEVYNWLPLCHC-INNKVLVMHGGLFSSDNVTLEDIRTIDRNR----- 327
KS L+ ++ LP N + L + T ++ + ++ ++
Sbjct: 304 KS----LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 328 ------QPPDE-------------------GLMCELLWSDPQIPNGRAPSKRGVGVHFGP 362
P E L+ L+W D K V V
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDV--------IKSDVMVVVNK 410
Query: 363 DVTKAFLERNKLEYIIRSHEV------KQDGYEVAHDGRCITVFSAP-NYCDSVGNKGAF 415
+ +E+ E I + K + H + ++ P +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFD--------- 460
Query: 416 ITMKGKDMVP--------HFTTYEAVGVSPPEPALENDKVTL--KFMTDLMQTYKAQGKL 465
D++P + + PE V L +F+ + K+
Sbjct: 461 ----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL---------EQKI 507
Query: 466 -HRKYAYR-------ILMDIK--KKKILNLD--FTQLFN--GDFVDR-GSFSVECIFT-L 509
H A+ L +K K I + D + +L N DF+ + + +T L
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 510 FGFKLLYPN 518
L+ +
Sbjct: 568 LRIALMAED 576
Score = 37.5 bits (86), Expect = 0.012
Identities = 39/307 (12%), Positives = 93/307 (30%), Gaps = 99/307 (32%)
Query: 257 NHESAYMNQIYGFE-GEVKSKYTDLMAQF---FTEVYNWLPLCHCINNKVLVMHGGLFSS 312
+H +M+ FE GE + +Y D+++ F F + ++ C V M + S
Sbjct: 1 HHHHHHMD----FETGEHQYQYKDILSVFEDAFVDNFD----C----KDVQDMPKSILSK 48
Query: 313 DNVTLEDI-----------RTIDRNRQPPDEGL---MCELL-----W---------SDPQ 344
+ + + I R +E + + E+L + P
Sbjct: 49 EEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 345 IPNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSH--EVKQDGY-------------- 388
+ +R + K + R + +R E++
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 389 --EVAHDGRCITVFSAPNYCDSVGNK---GAFITMKGK---DMVPHFTTYEAVGVSPPEP 440
+V + + ++ N + M K + P++T+ +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 441 ALENDKVTLKFMTDLMQTYKAQGKLHRKY--AYRILMDIKKKKILNLDFTQLFNGDFVDR 498
+ + + L+ L++ + Y +L++++ K N
Sbjct: 227 -IHSIQAELR---RLLK--------SKPYENCLLVLLNVQNAKAWN-------------- 260
Query: 499 GSFSVEC 505
+F++ C
Sbjct: 261 -AFNLSC 266
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 53.0 bits (128), Expect = 6e-08
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 51 YNKAIELYSAAIEV--NPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
Y +A + A + P + + N L+ + A K++ L++
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A ++ A + Y+ + + +
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARS 211
Score = 50.7 bits (122), Expect = 3e-07
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 40 AEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQ 99
H +Q K + A + Y YL+ A KA+E+D
Sbjct: 15 VPRGSHMGDQNPLKTDKGRDEARDA------YIQLGLGYLQRGNTEQAKVPLRKALEIDP 68
Query: 100 TYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ A+ A + + + KLA +Y + +
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107
Score = 45.7 bits (109), Expect = 1e-05
Identities = 7/91 (7%), Positives = 20/91 (21%), Gaps = 1/91 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A E + ++ +N + K A + ++
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
A + + P + +
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
Score = 44.2 bits (105), Expect = 5e-05
Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
+A A+E++P+ A +A + + A + KA+ D +
Sbjct: 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
+++ A + + + ++
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143
Score = 43.0 bits (102), Expect = 1e-04
Identities = 10/60 (16%), Positives = 17/60 (28%)
Query: 79 LKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
L + K + AY + Y+ G + A + P+ DA
Sbjct: 14 LVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 54.2 bits (130), Expect = 7e-08
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 20/119 (16%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLK-------------------T 81
A + + +KAIEL A+E P A + Y
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
Query: 82 EAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
E IG+A+ KA E + + A+ + +++ A ++ +
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Score = 53.4 bits (128), Expect = 1e-07
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDA----SKAIELDQTYTKAY 105
AI+ AI +NP + K G + +A+E T
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A Y + A+ + + PN+
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283
Score = 48.0 bits (114), Expect = 6e-06
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 39 KAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIG---YALNDASKA 94
+ +A + A+E P + + + A + + A++ +A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKL----ALRDYEAVHKARPNDKDA 138
I L+ A + + + E + P D
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249
Score = 46.5 bits (110), Expect = 2e-05
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 46 FKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
++ + +KAI + +++N + + L+ A + + ++A
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKS-REKEKMKDKLQ--------KIAKMRLSKNGADSEAL 433
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ A K + A D E ++ A
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
Score = 45.3 bits (107), Expect = 3e-05
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
+ + + +L A+E P + + Y + + A+ KA+E
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
+ + Y + + LR+ K + + A
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Score = 43.4 bits (102), Expect = 1e-04
Identities = 15/146 (10%), Positives = 37/146 (25%), Gaps = 11/146 (7%)
Query: 32 KERAEKLKAEANEHFKN-----QAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIG 85
+ + ++ + A+ A E N + + + +
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351
Query: 86 YALNDASKAIELDQTYTKA---YYRRA-AAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
A K + T + R + A+ + K ++ +
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411
Query: 142 FTECNKIVKRMQIKGKLHRKYAYRIL 167
+ KI K ++ A +L
Sbjct: 412 KDKLQKIAKM-RLSKNGADSEALHVL 436
Score = 43.0 bits (101), Expect = 2e-04
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 14/113 (12%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP---------TAIYYANRSFAYLKTEAIGY--ALND 90
A ++ + V + + LK A
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 91 ASKAIELDQTYTKAYYRRAAAYMSLGKFK---LALRDYEAVHKARPNDKDAKA 140
KA+E + A A L + A+ + P+++ K
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213
Score = 30.7 bits (69), Expect = 1.3
Identities = 13/125 (10%), Positives = 27/125 (21%), Gaps = 22/125 (17%)
Query: 32 KERAEKLKAEANEHF------KNQAYNKAIELYSAAIEVNPT---AIYYANRSFAYLKT- 81
+ +LK HF + + + E A ++
Sbjct: 10 ESSLRQLKC----HFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKG 65
Query: 82 ---EAIGY-----ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARP 133
A+ L A + + + A Y +G+ + V
Sbjct: 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125
Query: 134 NDKDA 138
Sbjct: 126 KFSSP 130
Score = 29.1 bits (65), Expect = 3.8
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 38 LKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIE 96
+K K + +K ++ + N + +F E + A D+ + +E
Sbjct: 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 97 LDQTYTKAYY 106
A
Sbjct: 459 SGSLIPSASS 468
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 53.2 bits (127), Expect = 1e-07
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 49 QAYNKAIELYSAAIEVNP---TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
+ + + +I Y ++ + L + + I+L+ ++ Y
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NY 313
Query: 106 YRRAAAYMSLGKFKLALRDYEAVHKARPND 135
Y G + A Y RP
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRPGA 343
Score = 45.9 bits (108), Expect = 2e-05
Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 34 RAEKLKAEANEHFKN---QAYNKAIELYSAAIEVNPTAIY-YANRSFAY--------LKT 81
+A+++ + ++ N+A EL ++ +P Y A ++ L
Sbjct: 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE 254
Query: 82 EAIGYALNDASKAIELDQT--YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPN 134
+ + + + L + + Y +A + + GK + + +
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
Score = 43.6 bits (102), Expect = 1e-04
Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 12/137 (8%)
Query: 2 ARVYLSLEYLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANE----------HFKNQAY 51
AR +L + + + + + + + L N
Sbjct: 235 ARAEKALVDI-VRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293
Query: 52 NKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY-RRAA 110
+++ + + I++ + + Y Y A + A L Y+
Sbjct: 294 DESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353
Query: 111 AYMSLGKFKLALRDYEA 127
S+ L + A
Sbjct: 354 FQTSVPYVVPYLDKFLA 370
Score = 32.0 bits (72), Expect = 0.50
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 18/118 (15%)
Query: 53 KAIELYSAAIEVNPTAIYYANRSFAYLKT---EAIGYALNDASKAIELDQTYTKAYYRRA 109
+ E + + ++ YL +++ A + ++ +T A +A
Sbjct: 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKA 240
Query: 110 AAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRIL 167
+ H P D+ A I + + + Y+I
Sbjct: 241 LVDI-------------VRHSQHPLDEKQLAALNTE--IDNIVTLPELNNLSIIYQIK 283
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 49.3 bits (118), Expect = 1e-07
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 4/91 (4%)
Query: 51 YNKAIELYSAAIEVNPT----AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106
+A+ Y AI A Y + A + ++ +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKD 137
A +LG+++ + + +D+
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 34.7 bits (80), Expect = 0.016
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 93 KAIELDQT---YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
KAI + Y + + +LG+++ A K PN +
Sbjct: 15 KAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Score = 32.0 bits (73), Expect = 0.14
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 20/106 (18%)
Query: 26 EVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAI 84
++ K+ AE + Y KA + + ++ P +
Sbjct: 18 ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL------ 71
Query: 85 GYALNDASKAIELDQTYTKAYYRRAAAYMS----LGKFKLALRDYE 126
Y L + +E + A S + +K A+ Y
Sbjct: 72 -YNLGRYEQGVE--------LLLKIIAETSDDETIQSYKQAILFYA 108
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 51.1 bits (123), Expect = 2e-07
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 51 YNKAIELYSAAIEV--NPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYR 107
+++ + A+ PT I N+ K G A +++ + A+
Sbjct: 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
A M G+ A ++ +
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
Score = 45.3 bits (108), Expect = 1e-05
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
+ + Y++ + A A++ D A+ RA Y L A +
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 128 VHKARPNDKDA 138
+P+ +
Sbjct: 68 ALSIKPDSAEI 78
Score = 42.6 bits (101), Expect = 1e-04
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Query: 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY 86
+ + + + A E+ + Q Y +A A++ +P + + R+ Y +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 87 ALNDASKAIELDQTYTKAYYRRAAAYMS-LGKFKLALRDYEAVHKARPNDKDAKA 140
A +A+ + + L + ++ ++ A
Sbjct: 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 58/378 (15%), Positives = 103/378 (27%), Gaps = 126/378 (33%)
Query: 57 LYSAAIEVN---PTAIY-YANR---SF-AYLKTEAIGYALNDA-SKAIELDQTYTKAYYR 107
L ++E PTA + A++ F L G+A +D + EL
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL---------- 60
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRIL 167
+GKF L + + + +F + + + Y L
Sbjct: 61 -------VGKF-LG-------YVSSLVEPSKVGQFDQVLNLCLT-----EFENCY----L 96
Query: 168 M--DIKALFMTQDSLVHITVEDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGD 225
DI AL + E++ ++ + + + N LF
Sbjct: 97 EGNDIHAL------AAKLLQENDTTLVKTKELIKNYITARIMAKRP-FDKKSNSALFRA- 148
Query: 226 FVDRGSFSVECIFTLFGFKLLYPNHFFMARGNHESAY---MNQIYGFEGEVKSKYTDLMA 282
V G+ + +FG +GN + Y + +Y Y L+
Sbjct: 149 -VGEGNAQ---LVAIFG-----------GQGNTDD-YFEELRDLY-------QTYHVLVG 185
Query: 283 QFFTEVYNWL-PLCHCINNKVLVMHGGLFSSDNVTLEDIRT-IDRNRQPPDEGLMCELLW 340
L L + V GL +I ++ PD+ + +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGL---------NILEWLENPSNTPDKDYLLSIPI 236
Query: 341 SDPQI------------------PNGRAPSKRGVGVHFGPDVTKA-----------FLE- 370
S P I P +G H + A F
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFFVS 295
Query: 371 -RNKLE---YI-IRSHEV 383
R + +I +R +E
Sbjct: 296 VRKAITVLFFIGVRCYEA 313
Score = 35.8 bits (82), Expect = 0.043
Identities = 51/265 (19%), Positives = 83/265 (31%), Gaps = 102/265 (38%)
Query: 10 YLSMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSA------AIE 63
Y +M E V+ K + EK+ E NEH + + L SA A+
Sbjct: 1688 YSAMI----------FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL- 1736
Query: 64 VNPTAIYYANRSFAYLKTEAI--------G-----Y-ALNDASKA--IELDQTYTKAYYR 107
T + A +F LK++ + G Y AL AS A + ++ +YR
Sbjct: 1737 ---TLMEKA--AFEDLKSKGLIPADATFAGHSLGEYAAL--ASLADVMSIESLVEVVFYR 1789
Query: 108 RAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYAYRIL 167
G + A P D+ ++ + R+
Sbjct: 1790 --------GM---------TMQVAVPRDELGRSNYGMIAINPGRV--------------- 1817
Query: 168 MDIKALFMTQDSLVHITVEDEAKFT----------------VC-GDIHGQFYDLMNIFEL 210
A +Q++L ++ VE K T V GD+ + N+
Sbjct: 1818 ----AASFSQEALQYV-VERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-LDTVTNVLNF 1871
Query: 211 NGLPSPDNPYLFNGDFVDRGSFSVE 235
L D L + S S+E
Sbjct: 1872 IKLQKIDIIEL-------QKSLSLE 1889
Score = 34.6 bits (79), Expect = 0.089
Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 72/210 (34%)
Query: 3 RVYLSLEYLSMSSTTNASNPAPKEVSVED--KERAEKLKAEANEHFKNQAYNKAIELYSA 60
L L S N P+P +S+ + +E+ + + N H K +E+
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPA---GKQVEI--- 368
Query: 61 AIEVNPTAIYYANRSFAYLKTEAI--GYALNDASKAIELDQTYTKAYYRRAAAYMSLGKF 118
++ VN ++ + G SL
Sbjct: 369 SL-VN------GAKNL-------VVSGPPQ-------------------------SLYGL 389
Query: 119 KLALRDYEAVHKARPNDKD-AKAKFTECNKIVKRMQ---IKGKLHRKY----AYRILMDI 170
L LR +A P+ D ++ F+E K+ + + H + I D+
Sbjct: 390 NLTLRKAKA-----PSGLDQSRIPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 171 KA--LFMTQDSLVHITVEDEAKFTVCG-DI 197
+ + I V D T G D+
Sbjct: 444 VKNNVSFNAKDI-QIPVYD----TFDGSDL 468
Score = 31.9 bits (72), Expect = 0.61
Identities = 67/401 (16%), Positives = 104/401 (25%), Gaps = 176/401 (43%)
Query: 136 KDAKAKFTECNKIVKRMQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEAKFTVC- 194
D + R H K Y S++ I + + T+
Sbjct: 1633 MDLYKTSKAAQDVWNRA----DNHFKDTYGF------------SILDIVINNPVNLTIHF 1676
Query: 195 GDIHGQF----YDLMNIFE------------LNGLPSPDNPYLFNGDFVDRGS------- 231
G G+ Y M IFE + Y F + +G
Sbjct: 1677 GGEKGKRIRENYSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSE---KGLLSATQFT 1732
Query: 232 ----FSVEC-IFTLFGFKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFT 286
+E F K L P A G H S GE Y A
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFA-G-H-SL---------GE----YA---A---- 1769
Query: 287 EVYNWLPLCHCINNKVLVMHGGLFSSDNVTLED-IRTIDRNRQPPDEGLMCELLWSDPQI 345
L + S +E + + R G+ ++ P+
Sbjct: 1770 -------LASL---------ADVMS-----IESLVEVV-FYR-----GMTMQVA--VPRD 1800
Query: 346 PNGRAPSKRGVGVHFGPDVTKAFLERNKLEYIIRSHEVKQDGY--EVAHDGRCITVFSAP 403
GR+ + + + P A + L+Y++ K+ G+ E+
Sbjct: 1801 ELGRS-NYGMIAI--NPGRVAASFSQEALQYVVERVG-KRTGWLVEIV------------ 1844
Query: 404 NYCDSVGNKGAFITMKGKDMVPHFTTYEAVGVSPPEPALENDKVTLKFMTDLMQTYKAQG 463
NY N V + Y V + AL D VT
Sbjct: 1845 NY-----N------------VEN-QQY--V-AAGDLRAL--DTVT--------------- 1866
Query: 464 KLHRKYAYRILMDIKKKKILNLDFTQLFNGDFVDRGSFSVE 504
+L IK +KI D +L + S S+E
Sbjct: 1867 --------NVLNFIKLQKI---DIIEL-------QKSLSLE 1889
Score = 29.2 bits (65), Expect = 4.2
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 28/94 (29%)
Query: 418 MKGKDMVPHFTTYEAVGVSPPEPALENDKVTLKFMTDLMQTYKAQGKLHRKYAYRILMDI 477
++G D+ H A+ + + TL +L++ Y RI+
Sbjct: 96 LEGNDI--H-----ALAAKLLQ----ENDTTLVKTKELIKNY---------ITARIMAKR 135
Query: 478 KKKKILNLDFTQLFNGDFVDRGSFSVECIFTLFG 511
K N + LF V G+ + +FG
Sbjct: 136 PFDKKSN---SALFRA--VGEGNAQ---LVAIFG 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 49.9 bits (119), Expect = 3e-07
Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 6/104 (5%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDAS-----KAIE 96
+ Y+ ++ Y A+++ + A + + + KA+
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYA-ALATVLYYQASQHMTAQTRAMIDKALA 109
Query: 97 LDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
LD A A+ + A+ ++ V +
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
Score = 46.4 bits (110), Expect = 4e-06
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALND 90
+ ++ + ++ Q ++ I NP + +A YL +L
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 91 ASKAIELDQTYTKAYYRRAAAYMSLGKFKL---ALRDYEAVHKARPNDKDA 138
+A++L + Y A + + N+ A
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117
Score = 38.3 bits (89), Expect = 0.002
Identities = 7/69 (10%), Positives = 20/69 (28%)
Query: 72 ANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKA 131
+ + + L I + ++ + Y+ + +L Y +
Sbjct: 14 RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL 73
Query: 132 RPNDKDAKA 140
R + + A
Sbjct: 74 RGENAELYA 82
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 46.1 bits (110), Expect = 1e-06
Identities = 14/73 (19%), Positives = 23/73 (31%)
Query: 68 AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEA 127
+ +LK + AL + +E D Y YY Y L + A+ Y
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 128 VHKARPNDKDAKA 140
+ + K
Sbjct: 67 GIEVAREEGTQKD 79
Score = 42.6 bits (101), Expect = 2e-05
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQT 100
A EH K+ ++A+ L+ +E +P Y + Y + + A++ ++ IE+ +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 101 YTKAYYRRAAAYMSLGKFKLALRDYEAVH 129
L KL E H
Sbjct: 74 EGTQK-----DLSELQDAKLKAEGLEHHH 97
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 49.3 bits (117), Expect = 2e-06
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 48 NQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYY 106
+ ++ + +A IE P + +R L + + D A+
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204
Query: 107 RRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
R + L+ + + K +
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV 236
Score = 41.6 bits (97), Expect = 5e-04
Identities = 13/160 (8%), Positives = 53/160 (33%), Gaps = 17/160 (10%)
Query: 47 KNQAYNKAIELYSAAIEVNPTAIY-YANRSFAYLKTEAIGYALNDASKAIELDQTYTKAY 105
+ ++ +E + + + + + +R + + + L + ++ D +
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
Query: 106 YRRAAAYMSLGKF---KLALRDYEAVHKA---RPNDKDA---------KAKFTECNKIVK 150
+R + + + R+ + + P+++ A ++ ++
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLN 297
Query: 151 R-MQIKGKLHRKYAYRILMDIKALFMTQDSLVHITVEDEA 189
+ + ++ Y L+DI + + ++A
Sbjct: 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 337
Score = 33.5 bits (76), Expect = 0.17
Identities = 7/75 (9%), Positives = 24/75 (32%)
Query: 37 KLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIE 96
+ + + + ++ I++ P N L+ + N ++ ++
Sbjct: 242 FVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301
Query: 97 LDQTYTKAYYRRAAA 111
L +++ Y
Sbjct: 302 LQPSHSSPYLIAFLV 316
Score = 28.5 bits (63), Expect = 5.5
Identities = 4/42 (9%), Positives = 10/42 (23%)
Query: 94 AIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
I + Y A + + A + + +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 130
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 45.0 bits (107), Expect = 3e-06
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 87 ALNDASKAIELDQT-YTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
AL + ++ + +AYY AY LG ++ AL +Y++ + P+ +A+
Sbjct: 19 ALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 47.0 bits (111), Expect = 6e-06
Identities = 9/97 (9%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Query: 45 HFKNQAYNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGY--ALNDASKAIELDQTY 101
K + A + + + + ++ L A + +
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199
Query: 102 TKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+AA +M+ G+++ A + +
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 41.2 bits (98), Expect = 5e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 51 YNKAIELYSAAIEVNPT-AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRA 109
Y++AIE Y A+E++P A + N AY K A+ KA+ELD +A
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
Query: 110 AAYMSLG 116
A G
Sbjct: 85 NAKQKQG 91
Score = 38.5 bits (91), Expect = 5e-04
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 60 AAIEVNPT--AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGK 117
A+ +P A + N AY K A+ KA+ELD +A+Y AY G
Sbjct: 1 GAM--DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 58
Query: 118 FKLALRDYEAVHKA---RPNDKDA 138
+ A+ Y+ KA PN+ +A
Sbjct: 59 YDEAIEYYQ---KALELDPNNAEA 79
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 43.2 bits (101), Expect = 1e-04
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 14/152 (9%)
Query: 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN 249
+ + D+H L + L+ D+ GD V G EC+ +
Sbjct: 5 RILIISDVHANLVALEAV--LSDAGRVDD-IWSLGDIVGYGPRPRECVELVRVL-----A 56
Query: 250 HFFMARGNHESAYMNQIYGFEGEVKSKYTD--LMAQFFTEVYNWL---PLCHCINNKVLV 304
GNH+ A + ++ E +++ Q E +L P I+ V
Sbjct: 57 PNISVIGNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNRM-IDGDWTV 115
Query: 305 MHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMC 336
+HG + + R N D L
Sbjct: 116 VHGSPRHPIWEYIYNARIAALNFPAFDTPLCF 147
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 41.7 bits (97), Expect = 1e-04
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 22/119 (18%)
Query: 51 YNKAIELYSAAIEVNP-TAIYYANRSFAYL----------KTEAIGYALNDASKAIELDQ 99
+ + + + NP A L + I A+ +A+ +D
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 100 TYTKAYYRRAAAYMSLGK-----------FKLALRDYEAVHKARPNDKDAKAKFTECNK 147
+A + AY S F LA + ++ +P++ K
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 40.1 bits (93), Expect = 0.001
Identities = 23/173 (13%), Positives = 44/173 (25%), Gaps = 19/173 (10%)
Query: 190 KFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPN 249
K + DIHG L + D Y GD + G+ + L
Sbjct: 13 KIALLSDIHGNTTALEAVLADARQLGVDE-YWLLGDILMPGTGRRRILDLLDQL-----P 66
Query: 250 HFFMARGNHESAY-------MNQIYGFEGEVKSKYTDLMAQFFTEVYNWL---PLCHCI- 298
GN E + ++ + + + ++ + E L PL
Sbjct: 67 ITARVLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQ 126
Query: 299 --NNKVLVMHGGLFSSDNVTLEDIRTIDRNRQPPDEGLMCELLWSDPQIPNGR 349
+ V + H + L + + ++ R
Sbjct: 127 FGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQLLR 179
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 39.2 bits (91), Expect = 0.001
Identities = 17/157 (10%), Positives = 39/157 (24%), Gaps = 45/157 (28%)
Query: 20 SNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP------------- 66
SN +P E+L + +E + + +A+ + +
Sbjct: 1 SNASP----------DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCL 50
Query: 67 ----------------------TAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104
+ + A L + + + +
Sbjct: 51 LETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFEL 110
Query: 105 YYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKAK 141
A Y +G+ + AL + K +D + K
Sbjct: 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-TAIYYANRSFAYLKTEAIGYALN 89
AE LKAE + + ++ + +Y + + + Y Y + L
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 90 DASKAIELDQTYTKAYY--RRAAAYMSLGKFKLALRDYE 126
+ K Y R ++ A+ Y
Sbjct: 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125
Score = 36.3 bits (84), Expect = 0.020
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPT-------AIYYANRSFAYLKTEAIGYALNDASKA 94
F + Y +AI Y A + P A ++ + AY + ++ +A
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167
Query: 95 IELDQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
+++ Q + R + + + Y+
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD 199
Score = 34.0 bits (78), Expect = 0.10
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNPTA--IYYANRSFAYLKTEAIGYALNDASKAIEL-- 97
+ K KA + ++ +Y +
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327
Query: 98 ---DQTYTKAYYRRAA-AYMSLGKFKLALRDYEAVHKAR 132
Y +A R AA + S F+ A Y V KA+
Sbjct: 328 KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
Score = 32.1 bits (73), Expect = 0.47
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 51 YNKAIELYSAAIEVNP-------TAIYYANRSFAYLKTEAIGYALNDASKAIEL-----D 98
Y+KA+ AA+E+ AI N + +Y ++ A+ KA ++
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257
Query: 99 QTYTKAYYRRAAAYMSLGKFKLALRDYE 126
K + + G+ + A + E
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIE 285
Score = 29.4 bits (66), Expect = 3.6
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGY-AL 88
+D E+AE A ++ + + ++ A+++ Y+ R+ L A Y
Sbjct: 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195
Query: 89 NDASKAIEL-------------DQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
KA+ D+ + A +Y G ++A+ ++
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 39.1 bits (91), Expect = 0.002
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 13/109 (11%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLK---------- 80
+ A A + + +KA+ LY A V + K
Sbjct: 111 TPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170
Query: 81 -TEAIGYALNDASKAIELDQTYT--KAYYRRAAAYMSLGKFKLALRDYE 126
EA + S E++ T K + + + A +
Sbjct: 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
Score = 34.9 bits (80), Expect = 0.055
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 14/124 (11%)
Query: 31 DKERAEKLKAEANEHFKNQ--------AYNKAIELYSAAIEVNPTAIYYANRSFAYLKTE 82
D + A A+A FKN AY + E ++ + A + +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 83 AIGYALNDASKAIELDQTYTK-----AYYRRAAAYMSLGKFKLALRDYE-AVHKARPNDK 136
+ A+ KA + RA M A+ Y+ A ++
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEER 150
Query: 137 DAKA 140
+A
Sbjct: 151 LRQA 154
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 37.1 bits (85), Expect = 0.008
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 190 KFTVCGDIHGQFYDLM----NIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKL 245
V +I G L I E+ Y G+ V + E I + L
Sbjct: 3 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVI--KDL 60
Query: 246 LYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQF 284
+ + RG ++ +L
Sbjct: 61 TKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHV 99
Score = 28.2 bits (62), Expect = 6.2
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 472 RILMDIKKKKILNLDFTQLFN-GDFVDRGSFSVECIFTL 509
L I++ + + + + G+ V + E I +
Sbjct: 19 AALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVI 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 37.1 bits (86), Expect = 0.013
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 17/142 (11%)
Query: 2 ARVYLSLEYLSMSSTTNASNPAPKEVSVEDKERAEK----------LKAEANEHFKNQAY 51
R L LEYL + + ++ + + Y
Sbjct: 60 FRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREY 119
Query: 52 NKAIELYSAAIEVNPT-------AIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKA 104
AI+ + A A ++ S +Y + ++++ A +A E+ + +
Sbjct: 120 LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179
Query: 105 YYRRAAAYMSLGKFKLALRDYE 126
R + L L+ YE
Sbjct: 180 NIRLLQCHSLFATNFLDLKQYE 201
Score = 33.6 bits (77), Expect = 0.14
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALND 90
AE L+ E + ++ + LY + +E + L+D
Sbjct: 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFR-HNLMLEYLEPLEKMRIEEQPRLSD 85
Query: 91 ASKAIELDQTYTK------AYYRRAAAYMSLGKFKLALRDYE 126
I+ Q + R + ++ A++ ++
Sbjct: 86 LLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFK 127
Score = 31.3 bits (71), Expect = 0.82
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 42 ANEHFKNQAYNKAIELYSAAIEVNP---------TAIYYANRSFAYLKTEAIGYALNDAS 92
H+K +KA E +S + + + + + EAI D
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF-DFL 329
Query: 93 KAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132
++ L A Y F+ A + V + R
Sbjct: 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
Score = 30.6 bits (69), Expect = 1.2
Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 19/149 (12%)
Query: 51 YNKAIELYSAAIEVNP-------TAIYYANRSFAYLK----TEAIGY---ALNDASKAIE 96
Y AI + A + N +AI Y A+ +
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI-AVFEESN 258
Query: 97 LDQTYTKAYYRRAAAYMSLGKFKLALRDYE-AVHKAR-PNDKDAKAKFTECNKIVKRMQI 154
+ + +AY+ + LGK A + + ++ D ++F +
Sbjct: 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318
Query: 155 KGKLHRKYAYRILMDIKALFMTQDSLVHI 183
+ + + + L +D + +
Sbjct: 319 EEAI--QGFFDFLESKMLYADLEDFAIDV 345
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 36.9 bits (86), Expect = 0.015
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLK----TEAIG 85
+L E K+ + + AA++V + Y+ AY +A+
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 86 Y---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
Y L ++ I KA LG F A+ +
Sbjct: 69 YHHHDL-TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 111
Score = 29.6 bits (67), Expect = 3.2
Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 33/99 (33%)
Query: 51 YNKAIELYSAAIEVN-------PTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
+ A E Y + + A + Y L D KAI+ + K
Sbjct: 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-------TLLQDYEKAIDY---HLK 292
Query: 104 A----------------YYRRAAAYMSLGKFKLALRDYE 126
+ AY +LG A+ E
Sbjct: 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331
Score = 28.4 bits (64), Expect = 6.7
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 27/117 (23%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNP-------TAIYYANRSFAYLKTE 82
+ A A++ Y + + + N +
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH---- 197
Query: 83 AIGYALNDASKAIEL------------DQTYT-KAYYRRAAAYMSLGKFKLALRDYE 126
Y L + A+ D+ +AY AY+ LG+F+ A Y+
Sbjct: 198 ---YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 36.2 bits (83), Expect = 0.021
Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 3/114 (2%)
Query: 33 ERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDAS 92
A Y A+E AA + ++ Y E ++
Sbjct: 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVK 159
Query: 93 KAIELDQTYTK--AYYRRAAAYMSLGKFKLALRDYE-AVHKARPNDKDAKAKFT 143
A + + A A +L F A R A +
Sbjct: 160 SAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWY 213
Score = 34.7 bits (79), Expect = 0.054
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 45 HFKNQAYNKAIELYSAAIEVNPTAIYYANRSF-----AYLK--TEAIGYALNDASKAIEL 97
+ + + I+ +A + + A A L TEA L +A+ +
Sbjct: 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR-LTEANDSPAG 203
Query: 98 DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAKA 140
+ + A A S G A+ E + P K A A
Sbjct: 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAA 246
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 33.9 bits (78), Expect = 0.036
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 13/109 (11%)
Query: 41 EANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAI----E 96
A + KN Y+ A +L+ + +E+ P +Y N A YA + A +
Sbjct: 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPN---ALYWLGESYYATRNFQLAEAQFRD 64
Query: 97 LDQTYTK------AYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDAK 139
L Y + + GK A + + V P A+
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 33.6 bits (76), Expect = 0.084
Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 13/128 (10%)
Query: 2 ARVYLSLEYL-SMSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSA 60
A ++ ++ L S+ T + +NP + + L A+ F ++ Y A+ Y+
Sbjct: 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQK----YQLLVYHADSLFHDKEYRNAVSKYTM 88
Query: 61 AIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKL 120
A++ + + + + E++ Y+ A Y L + K
Sbjct: 89 ALQQKKALSKTSKVRPSTGNSASTP---QSQCLPSEIEV-----KYKLAECYTVLKQDKD 140
Query: 121 ALRDYEAV 128
A+ + +
Sbjct: 141 AIAILDGI 148
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 34.1 bits (79), Expect = 0.086
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLKT----EAIG 85
+L E K+ + + AA++V + Y+ AY +A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 86 Y---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
Y L ++ I KA LG F A+ +
Sbjct: 65 YHHHDL-TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 107
Score = 29.9 bits (68), Expect = 2.2
Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 33/99 (33%)
Query: 51 YNKAIELYSAAIEVN-------PTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
+ A E Y + + A + Y L D KAI+ + K
Sbjct: 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-------TLLQDYEKAIDY---HLK 288
Query: 104 A----------------YYRRAAAYMSLGKFKLALRDYE 126
+ AY +LG A+ E
Sbjct: 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 34.2 bits (79), Expect = 0.091
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPT-----AIYYANRSFAYLK----TEAIG 85
+L E + + AAI+ + Y+ AY +A+
Sbjct: 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQ 107
Query: 86 Y---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
Y L +K++ K+ +G+F A E
Sbjct: 108 YHKHDL-TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150
Score = 30.0 bits (68), Expect = 2.0
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 33/99 (33%)
Query: 51 YNKAIELYSAAIEV-------NPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTK 103
+ A E Y + + A + Y L++ + AIE + +
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-------TLLHEFNTAIEY---HNR 328
Query: 104 A----------------YYRRAAAYMSLGKFKLALRDYE 126
+ A+ ++G + AL+ E
Sbjct: 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367
Score = 28.8 bits (65), Expect = 5.3
Identities = 4/63 (6%), Positives = 13/63 (20%), Gaps = 4/63 (6%)
Query: 82 EAIGY---ALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPNDKDA 138
+ + + G + + ++A +A D
Sbjct: 26 GGTNSHDGNSQ-QGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT 84
Query: 139 KAK 141
+
Sbjct: 85 LSA 87
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A
1wr0_A 2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 33.8 bits (77), Expect = 0.15
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 13 MSSTTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYA 72
M+ST ++A L ++A + K Y +A++LY A++ + Y
Sbjct: 1 MASTNTN------------LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYE 48
Query: 73 NRS 75
+
Sbjct: 49 AQG 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 32.4 bits (74), Expect = 0.32
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 34/138 (24%)
Query: 35 AEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRS-----FAYLKTEAIGYALN 89
++ A E + Y++AIE + A T +A + AY Y
Sbjct: 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAY-------YQNK 66
Query: 90 DASKAIELDQTYTK----------AYYRRAAAYMS--------LGKFKLALRDYEAVHKA 131
+ A + + + A Y RA Y + A+ ++
Sbjct: 67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126
Query: 132 RPNDK---DAKAKFTECN 146
PN + DA K E
Sbjct: 127 YPNHELVDDATQKIRELR 144
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 31.9 bits (72), Expect = 0.51
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 14/124 (11%)
Query: 30 EDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYA-L 88
+ E A++ AI++ + + + I L
Sbjct: 72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131
Query: 89 NDASKAIEL-------------DQTYTKAYYRRAAAYMSLGKFKLALRDYEAVHKARPND 135
+D +KAI+ K + + A G++ A Y + K+ +
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191
Query: 136 KDAK 139
+ ++
Sbjct: 192 RLSQ 195
Score = 31.9 bits (72), Expect = 0.53
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 5/116 (4%)
Query: 49 QAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRR 108
++ KA + A + Y + A++ AI++ + + R
Sbjct: 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRG 116
Query: 109 AAAYMSLGK-FKLALRDYEAVHKARPNDKDAKAKFTECNKIVKRMQIKGKLHRKYA 163
A LG+ + L DY KA + A + + + + K A
Sbjct: 117 ANFKFELGEILENDLHDYA---KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 30.9 bits (69), Expect = 0.96
Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 32 KERAEKLKAEANEHFKNQAYNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAIGYALNDA 91
A + + + + K + I+V + Y + + ++
Sbjct: 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF 178
Query: 92 SKAIEL-------DQTYTKAYYRRAAAYMSLGKFKLAL 122
+ ++ ++ K Y A A +++ +L
Sbjct: 179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 29.2 bits (65), Expect = 1.1
Identities = 10/49 (20%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 15 STTNASNPAPKEVSVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIE 63
++ +S + + + ++A L ++A + K Y +A++LY A++
Sbjct: 1 GSSGSSGMSS---TSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 30.1 bits (67), Expect = 1.3
Identities = 7/75 (9%), Positives = 17/75 (22%), Gaps = 2/75 (2%)
Query: 186 EDEAKFTVCGDIHGQFYDLMNIFELNGLPSPDNPYLFNGDFVDRGSFSVECIFTLFGFKL 245
+ G L +L D G+ + + + S +
Sbjct: 3 RTVRYILATSNPMGDLEALEKFVKLAPDTGAD-AIALIGNLMPKAAKSRDYAAFFRILSE 61
Query: 246 LYPNHFFMARGNHES 260
+ G ++
Sbjct: 62 AHLP-TAYVPGPQDA 75
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone
modification; 1.56A {Homo sapiens}
Length = 123
Score = 28.8 bits (64), Expect = 1.7
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 311 SSDNVTLEDIRTIDRNRQ-PPDEGLMCELLWSDPQIPNGR 349
S + EDI + D + PP EG + ++ W D ++ +
Sbjct: 45 FSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLYGAK 84
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 29.2 bits (65), Expect = 2.3
Identities = 6/34 (17%), Positives = 8/34 (23%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV 64
D A+ +A A IE
Sbjct: 126 DLGAAKANLEKAQSELLGAADEATRAEIQIRIEA 159
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 27.9 bits (62), Expect = 2.4
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV 64
D A + A E Y +A+ Y I++
Sbjct: 8 QDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone
lysine demethylase, tandem hybrid tudor domains, metal
binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Length = 118
Score = 28.5 bits (63), Expect = 2.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 311 SSDNVTLEDIRTIDRNRQ-PPDEGLMCELLWSDPQIPNGR 349
SDN+ EDI + D + PP EG + ++ W+D Q+ +
Sbjct: 44 FSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAK 83
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 28.4 bits (64), Expect = 2.7
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIE 63
D RA+ K A ++Q + + A++
Sbjct: 89 DVLRAKAAKERAERRLQSQQDDIDFKRAELALK 121
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 29.4 bits (67), Expect = 2.7
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 16/98 (16%)
Query: 51 YNKAIELYSAAI---------EVNP-TAIYYANRSFAYLK----TEAIG-YALNDASKAI 95
+ +A LY + V+ + + + KA
Sbjct: 211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270
Query: 96 ELDQTYT-KAYYRRAAAYMSLGKFKLALRDYEAVHKAR 132
++D A Y GKF+ A EA ++R
Sbjct: 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 28.7 bits (64), Expect = 3.0
Identities = 6/34 (17%), Positives = 8/34 (23%)
Query: 31 DKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV 64
D A+ +A A IE
Sbjct: 104 DLGAAKANLEKAQSELLGAADEATRAEIQIRIEA 137
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 29.1 bits (65), Expect = 3.1
Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 16/124 (12%)
Query: 61 AIEVNPTAIYYANRSFAYLKTEAIGYALNDASKAIELDQTYTKAYYRRAAAYMSLGKFKL 120
E + +A RS A + + +E D T R A + F
Sbjct: 65 LYERSQEMAEFARRSLEL----PDNAAFSARIEVLEAD--VTLRAKARVEAGLPDEHFHH 118
Query: 121 ALRD---YEAVHKARPNDKDAKAKFTE-------CNKIVKRMQIKGKLHRKYAYRILMDI 170
+ + +A + P+ A+A M G+L + + +I
Sbjct: 119 VIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEI 178
Query: 171 KALF 174
A
Sbjct: 179 IAAC 182
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for
structural genomics, protein structure initiative,
PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium
hafniense}
Length = 189
Score = 28.8 bits (65), Expect = 3.7
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 29 VEDKERAEKLKAEANEHFKNQA----YNKAIELYSAAIEVNPTAIYYANRSFAYLKTEAI 84
V++KE ++++AE + YN+ +E P I +
Sbjct: 53 VKNKELMQEMEAEGLAYLAGMEDQSSYNRIMERGGRLFYGAPCMI------VVPIDPTQY 106
Query: 85 GYALNDASKAIE 96
G AL D +
Sbjct: 107 GPALVDCGILCQ 118
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 4.5
Identities = 4/34 (11%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 25 KEVSVEDKERAEKLKAEANEHFKNQA--YNKAIE 56
+E+ K ++ + +A + + ++ +E
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 26.4 bits (58), Expect = 6.6
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 28 SVEDKERAEKLKAEANEHFKNQAYNKAIELYSAAIEV 64
+ + + +L +A + Y +A Y ++
Sbjct: 6 TGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 28.0 bits (63), Expect = 7.2
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 14/90 (15%)
Query: 51 YNKAIELYSAAIEV-------NPTAIYYANRSFAYLK----TEAIGY---ALNDASKAIE 96
+++A + A + A + E
Sbjct: 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101
Query: 97 LDQTYTKAYYRRAAAYMSLGKFKLALRDYE 126
+ Y A + G A ++YE
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYE 131
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Length = 615
Score = 28.3 bits (64), Expect = 7.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 20 SNPAPKEVSVEDKERAEKLKAEANEHFKNQAY 51
S+P + + E + + L E EH Y
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREH--QFRY 31
>2j7a_A Cytochrome C nitrite reductase NRFA; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_A*
Length = 500
Score = 28.4 bits (62), Expect = 7.6
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 243 FKLLYPNHFFMARGNHESAYMNQIYGFEGEVKSKYTDLMAQFFTEVYNWLPLCHCINNKV 302
FK +P + N E+ M + G K+ + + + + +L
Sbjct: 29 FKPEFPKQYASYERNDETTVMTEYKGSVPFNKNDNVNPLPEGYRHAQPYL---------K 79
Query: 303 LVMHGGLFSSDNVT-------LEDIRTIDRNRQPPDEGLM 335
+ G F + ++D IDR + ++G +
Sbjct: 80 NLWLGYPFMYEYREARGHTYAIQDFLHIDRINRYAEKGGL 119
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 286 TEVYNWLP----LCHCINNKVLVMHGGLFS 311
T +Y W+P L H + + HGG
Sbjct: 70 TRLYKWIPQNDLLGH-PKTRAFITHGGANG 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,506,633
Number of extensions: 524903
Number of successful extensions: 2043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1478
Number of HSP's successfully gapped: 369
Length of query: 546
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 448
Effective length of database: 3,965,535
Effective search space: 1776559680
Effective search space used: 1776559680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.8 bits)